Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55868233
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 983842 characters in sequence are not A, C, G, or T
File 170 of 187
Found at i:50552535 original size:75 final size:77
Alignment explanation
Indices: 50552435--50552578 Score: 211
Period size: 75 Copynumber: 1.9 Consensus size: 77
50552425 AAACATATGT
* * * *
50552435 CCAACGGCACCGTTTTCAGATCTTTCGA-GGCCTTAGCGGCGTTTT-TAGTGAAGCGCCGCTAAT
1 CCAACGGCACCGTTTTCAGAACTTTCAATGGCCTTAGCAGCGTTTTCTAGTAAAGCGCCGCTAAT
50552498 GCTTGGGGGTGC
66 GCTTGGGGGTGC
** *
50552510 CCAACGGCACCGTTTTCTTAACTTTCAATGGCGTTAGCAGCGTTTTCTAGTAAAGCGCCGCTAAT
1 CCAACGGCACCGTTTTCAGAACTTTCAATGGCCTTAGCAGCGTTTTCTAGTAAAGCGCCGCTAAT
50552575 GCTT
66 GCTT
50552579 ACTTTAGCGG
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
75 24 0.40
76 15 0.25
77 21 0.35
ACGTcount: A:0.19, C:0.26, G:0.26, T:0.30
Consensus pattern (77 bp):
CCAACGGCACCGTTTTCAGAACTTTCAATGGCCTTAGCAGCGTTTTCTAGTAAAGCGCCGCTAAT
GCTTGGGGGTGC
Found at i:50552945 original size:7 final size:7
Alignment explanation
Indices: 50552935--50552988 Score: 54
Period size: 7 Copynumber: 7.4 Consensus size: 7
50552925 GATTTAAAGT
50552935 TTAGGGG
1 TTAGGGG
*
50552942 TTAGGTG
1 TTAGGGG
* **
50552949 TTATGCT
1 TTAGGGG
50552956 TTAGGGG
1 TTAGGGG
50552963 TTAGGGG
1 TTAGGGG
50552970 TTAGGGG
1 TTAGGGG
50552977 ATTTAGGGG
1 --TTAGGGG
50552986 TTA
1 TTA
50552989 CAGTTAGGGT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
7 31 0.82
9 7 0.18
ACGTcount: A:0.17, C:0.02, G:0.44, T:0.37
Consensus pattern (7 bp):
TTAGGGG
Found at i:50553353 original size:14 final size:14
Alignment explanation
Indices: 50553325--50553367 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
50553315 TTCTCAAAAA
50553325 TATGGTTTA-GGTT
1 TATGGTTTAGGGTT
50553338 TATGGTTTAGGGTT
1 TATGGTTTAGGGTT
* *
50553352 TACGGTTTAGAGTT
1 TATGGTTTAGGGTT
50553366 TA
1 TA
50553368 GAGTTTTAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 9 0.33
14 18 0.67
ACGTcount: A:0.19, C:0.02, G:0.30, T:0.49
Consensus pattern (14 bp):
TATGGTTTAGGGTT
Found at i:50553360 original size:21 final size:20
Alignment explanation
Indices: 50553328--50553395 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 20
50553318 TCAAAAATAT
50553328 GGTTTAGGTTTATG-GTTTAG
1 GGTTTAGGTTTA-GAGTTTAG
50553348 GGTTTACGGTTTAGAGTTTAG
1 GGTTTA-GGTTTAGAGTTTAG
* * *
50553369 AGTTTTAGGTTTGGCGTTTAG
1 -GGTTTAGGTTTAGAGTTTAG
*
50553390 GATTTA
1 GGTTTA
50553396 AGATTTAAGG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 12 0.29
21 24 0.59
22 5 0.12
ACGTcount: A:0.18, C:0.03, G:0.32, T:0.47
Consensus pattern (20 bp):
GGTTTAGGTTTAGAGTTTAG
Found at i:50553366 original size:7 final size:6
Alignment explanation
Indices: 50553328--50553395 Score: 55
Period size: 7 Copynumber: 10.0 Consensus size: 6
50553318 TCAAAAATAT
50553328 GGTTTA GGTTTA TGGTTTA GGGTTTA CGGTTTA GAGTTTA GAGTTTTA
1 GGTTTA GGTTTA -GGTTTA -GGTTTA -GGTTTA G-GTTTA G-G-TTTA
*
50553376 GGTTTG GCGTTTA GGATTTA
1 GGTTTA G-GTTTA GG-TTTA
50553396 AGATTTAAGG
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
6 12 0.23
7 36 0.68
8 5 0.09
ACGTcount: A:0.18, C:0.03, G:0.32, T:0.47
Consensus pattern (6 bp):
GGTTTA
Found at i:50554067 original size:115 final size:115
Alignment explanation
Indices: 50553865--50554105 Score: 367
Period size: 115 Copynumber: 2.1 Consensus size: 115
50553855 GGCGTTTCAG
* ** * *
50553865 AAAAACGCCACTAAAGGTCATATATTACCGGCGTTTTTTGAAGAAACGCCGCAAATTTCCTTTAA
1 AAAAACGCCACTAAAAGTCATATATTACCGGCGTTTTACGAAGAAACGCCACAAATTGCCTTTAA
50553930 CTGTAACAAAGACGGTGCCGTTTTGTTGTTTACTTTTAGTGGCGCATT-T
66 CTGTAACAAAGACGGTGCCGTTTTGTTGTTTACTTTTAGTGGCGCATTAT
* *
50553979 AAAAAACGCCGCTAAAAGTGATATATTACCGGCGTTTTACGAAGAAACGCCACAAATTGCCTTTA
1 -AAAAACGCCACTAAAAGTCATATATTACCGGCGTTTTACGAAGAAACGCCACAAATTGCCTTTA
* * **
50554044 ACTGTGACAAAGATGGTGCCGTTTTGTTGTTTTTTTTTAGTGGCGCATTAT
65 ACTGTAACAAAGACGGTGCCGTTTTGTTGTTTACTTTTAGTGGCGCATTAT
50554095 AAAAACGCCAC
1 AAAAACGCCAC
50554106 AAATATTTAT
Statistics
Matches: 113, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
115 112 0.99
116 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32
Consensus pattern (115 bp):
AAAAACGCCACTAAAAGTCATATATTACCGGCGTTTTACGAAGAAACGCCACAAATTGCCTTTAA
CTGTAACAAAGACGGTGCCGTTTTGTTGTTTACTTTTAGTGGCGCATTAT
Found at i:50554429 original size:261 final size:261
Alignment explanation
Indices: 50553965--50554495 Score: 850
Period size: 261 Copynumber: 2.0 Consensus size: 261
50553955 TTGTTTACTT
50553965 TTAGTGGCGCATTTAAAAAACGCCGCTAAAAGTGATATATTACCGGCGTTTTACGAAGAAACGCC
1 TTAGTGGCGCATTTAAAAAACGCCGCTAAAAGTGATATATTACCGGCGTTTTACGAAGAAACGCC
* * * * * *
50554030 ACAAATTGCCTTTAACTGTGACAAAGATGGTGCCGTTTTGTTGTTTTTTTTTAGTGGCGCATTAT
66 ACAAATTGCCTTTAACCGTAACAAAGACGGTGCCGTTTCGTTCTTTTCTTTTAGTGGCGCATTAT
* *
50554095 AAAAACGCCACAAATATTTATTACGAGCTGAGGAAACGACGTCGTTTCCTATTTTTATTAATGGC
131 AAAAACGCCACAAATATTTATTACGAGCTGAGGAAACGACGCCATTTCCTATTTTTATTAATGGC
*
50554160 GCTTTAGCTAAAGCGCCGCAAAAATGTTTAATGTTATCTTATAACGGTGCCGTTTTGTCCT-TGT
196 GCTTTAGCTAAAGCGCCGCAAAAATGTTTAATGTTATCTTATAACGATGCCGTTTTGT-CTGTGT
50554224 TA
260 TA
* * *
50554226 TTAGTGGTGCATTTGAAAATCGCCGC-AAAAGGTGATATATTACCGGCGTTTTACGAAGAAACGC
1 TTAGTGGCGCATTTAAAAAACGCCGCTAAAA-GTGATATATTACCGGCGTTTTACGAAGAAACGC
* * *
50554290 CACAAATTTCCTTTAACCGTAACGAAGACGGTGCCGTTTCGTTCTTTTCTTTTAGTGGCGCATTT
65 CACAAATTGCCTTTAACCGTAACAAAGACGGTGCCGTTTCGTTCTTTTCTTTTAGTGGCGCATTA
* *
50554355 TAAAAACGCCACAAATATTTATTACGAGCTGAGGAAACGGCGCCATTTCCTATTTTTATTAGTGG
130 TAAAAACGCCACAAATATTTATTACGAGCTGAGGAAACGACGCCATTTCCTATTTTTATTAATGG
* * *
50554420 CGCTTTAGCTGAAGCGCCGCAAAAATGTTTAATGTTATCTTATGACGATGCTGTTTTGTCTGTGT
195 CGCTTTAGCTAAAGCGCCGCAAAAATGTTTAATGTTATCTTATAACGATGCCGTTTTGTCTGTGT
50554485 TA
260 TA
50554487 TTAGTGGCG
1 TTAGTGGCG
50554496 TTTTTACTCT
Statistics
Matches: 247, Mismatches: 21, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
260 6 0.02
261 241 0.98
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (261 bp):
TTAGTGGCGCATTTAAAAAACGCCGCTAAAAGTGATATATTACCGGCGTTTTACGAAGAAACGCC
ACAAATTGCCTTTAACCGTAACAAAGACGGTGCCGTTTCGTTCTTTTCTTTTAGTGGCGCATTAT
AAAAACGCCACAAATATTTATTACGAGCTGAGGAAACGACGCCATTTCCTATTTTTATTAATGGC
GCTTTAGCTAAAGCGCCGCAAAAATGTTTAATGTTATCTTATAACGATGCCGTTTTGTCTGTGTT
A
Found at i:50555151 original size:21 final size:21
Alignment explanation
Indices: 50555127--50555170 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
50555117 TAAGCTATGT
50555127 ATCCGTAAAAAATGATTTTGC
1 ATCCGTAAAAAATGATTTTGC
50555148 ATCCGTAAAAAATGATTTTGC
1 ATCCGTAAAAAATGATTTTGC
50555169 AT
1 AT
50555171 TTAGATTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (21 bp):
ATCCGTAAAAAATGATTTTGC
Found at i:50558945 original size:85 final size:83
Alignment explanation
Indices: 50558843--50559196 Score: 410
Period size: 85 Copynumber: 4.2 Consensus size: 83
50558833 TTTGTGAAAC
* * *
50558843 AAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGCATTTTTGAACAAGCTCCGCTATAGAACATTA
1 AAGCGCCGCTAAAGAACA-TGATC-TTTAGCGGCATTTTT-AACAAGCGCCGCTAAAGAACATGA
* *
50558906 -CTTTTAGAGGCGTTTTCTTCCA
63 TC-TTTAGCGGCGTTTT-TTCCT
* * ** *
50558928 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCAAAACGCCGCTAAAGAACATGATC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTAAC-AAGCGCCGCTAAAGAACATGATC
50558993 TTTAGCGGCGTTTTTTCCT
65 TTTAGCGGCGTTTTTTCCT
**
50559012 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTCCTAAGCGCCGCTAAAGAACATGATC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTAAC-AAGCGCCGCTAAAGAACATGATC
*
50559077 TTTAGCGGCATTTTTTTCCT
65 TTTAGCGGC-GTTTTTTCCT
* * *
50559097 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT-TCTTAAGCGCCGTTAAAGAACATGAT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTAAC--AAGCGCCGCTAAAGAACATGAT
*
50559161 CTTTAGCGGCGTTTTTTTCTGT
64 CTTTAGCGGCG-TTTTTTC-CT
*
50559183 AAGCGCCGCAAAAG
1 AAGCGCCGCTAAAG
50559197 TTAGCGACGT
Statistics
Matches: 240, Mismatches: 21, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
84 77 0.32
85 147 0.61
86 16 0.07
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (83 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTAACAAGCGCCGCTAAAGAACATGATCT
TTAGCGGCGTTTTTTCCT
Found at i:50559021 original size:127 final size:127
Alignment explanation
Indices: 50558846--50559177 Score: 449
Period size: 127 Copynumber: 2.6 Consensus size: 127
50558836 GTGAAACAAG
* ** * * *
50558846 CGCCGCTAAAGAACACT-A-CTTTTAGCGGCATTTTTGAAC-AAGCTCCGCTATAGAACATTA-C
1 CGCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTTT-TCCTAAGCGCCGCTAAAGAACATGATC
*
50558907 TTTTAGAGGCGTTTTCTTCCAAAACGCCGCTAAAGAACATGATCTTTAGCGGC-GTTTTTTCCAA
63 -TTTAGCGGCGTTTT-TTCCAAAACGCCGCTAAAGAACATGATCTTTAGCGGCAGTTTTTTCCAA
50558971 AA
126 AA
50558973 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGATCTTT
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGATCTTT
* * * * * *
50559038 AGCGGCATTTTTTCCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTTCCTAAG
66 AGCGGCGTTTTTTCCAAAACGCCGCTAAAGAACATGATCTTTAGCGGCAGTTTTTTCCAAAA
* *
50559100 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCTTAAGCGCCGTTAAAGAACATGATCTTT
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGATCTTT
50559165 AGCGGCGTTTTTT
66 AGCGGCGTTTTTT
50559178 TCTGTAAGCG
Statistics
Matches: 184, Mismatches: 16, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
126 37 0.20
127 145 0.79
128 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (127 bp):
CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGATCTTT
AGCGGCGTTTTTTCCAAAACGCCGCTAAAGAACATGATCTTTAGCGGCAGTTTTTTCCAAAA
Found at i:50559177 original size:42 final size:42
Alignment explanation
Indices: 50558843--50559196 Score: 455
Period size: 42 Copynumber: 8.3 Consensus size: 42
50558833 TTTGTGAAAC
* **
50558843 AAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGCATTTTTGAAC-
1 AAGCGCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTTT-TCCT
* * * * *
50558885 AAGCTCCGCTATAGAACATTA-CTTTTAGAGGCGTTTTCTTCCA
1 AAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTT-TTCCT
* *
50558928 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCA
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCT
*
50558970 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCT
*
50559012 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTCCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCT
*
50559054 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTTCCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGC-GTTTTTTCCT
*
50559097 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCTT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCT
* *
50559139 AAGCGCCGTTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTGT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTTC-CT
*
50559183 AAGCGCCGCAAAAG
1 AAGCGCCGCTAAAG
50559197 TTAGCGACGT
Statistics
Matches: 284, Mismatches: 21, Indels: 12
0.90 0.07 0.04
Matches are distributed among these distances:
41 1 0.00
42 190 0.67
43 79 0.28
44 14 0.05
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCT
Found at i:50575286 original size:12 final size:11
Alignment explanation
Indices: 50575269--50575327 Score: 72
Period size: 10 Copynumber: 5.6 Consensus size: 11
50575259 AATGGAAACT
50575269 AATTTTTTTTCG
1 AATTTTTTTT-G
50575281 AATTTTTTTTG
1 AATTTTTTTTG
50575292 AA-TTTTTTTG
1 AATTTTTTTTG
*
50575302 AGTTTTTTTTG
1 AATTTTTTTTG
50575313 --TTTTTTTT-
1 AATTTTTTTTG
50575321 AATTTTT
1 AATTTTT
50575328 GAAAAAAACT
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
9 8 0.19
10 14 0.33
11 11 0.26
12 10 0.23
ACGTcount: A:0.15, C:0.02, G:0.08, T:0.75
Consensus pattern (11 bp):
AATTTTTTTTG
Found at i:50575299 original size:21 final size:21
Alignment explanation
Indices: 50575273--50575312 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
50575263 GAAACTAATT
50575273 TTTTTTCGAATTTTTTTTGAA
1 TTTTTTCGAATTTTTTTTGAA
* *
50575294 TTTTTTTGAGTTTTTTTTG
1 TTTTTTCGAATTTTTTTTG
50575313 TTTTTTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.03, G:0.12, T:0.72
Consensus pattern (21 bp):
TTTTTTCGAATTTTTTTTGAA
Found at i:50593909 original size:15 final size:16
Alignment explanation
Indices: 50593883--50593912 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
50593873 TAAAAATAAT
50593883 TATGTGTTAAAATTTA
1 TATGTGTTAAAATTTA
50593899 TATGT-TTAAAATTT
1 TATGTGTTAAAATTT
50593913 TTAATGAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (16 bp):
TATGTGTTAAAATTTA
Found at i:50625603 original size:26 final size:27
Alignment explanation
Indices: 50625570--50625620 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
50625560 AAGAAATCAA
50625570 AAATGGGA-AATG-GAAAATAAGAGAGC
1 AAATGGGAGAA-GAGAAAATAAGAGAGC
*
50625596 AAATGGGAGAAGAGAAAATGAGAGA
1 AAATGGGAGAAGAGAAAATAAGAGA
50625621 AATGGATGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.55, C:0.02, G:0.33, T:0.10
Consensus pattern (27 bp):
AAATGGGAGAAGAGAAAATAAGAGAGC
Found at i:50626458 original size:73 final size:73
Alignment explanation
Indices: 50626349--50626501 Score: 306
Period size: 73 Copynumber: 2.1 Consensus size: 73
50626339 AAAGTCTATA
50626349 AATTTTTTAGTTTCCACACCCCTAAACTTAATTCATTTCTCATCTCAAGTAATGCTAACTTACAA
1 AATTTTTTAGTTTCCACACCCCTAAACTTAATTCATTTCTCATCTCAAGTAATGCTAACTTACAA
50626414 AAGAATTT
66 AAGAATTT
50626422 AATTTTTTAGTTTCCACACCCCTAAACTTAATTCATTTCTCATCTCAAGTAATGCTAACTTACAA
1 AATTTTTTAGTTTCCACACCCCTAAACTTAATTCATTTCTCATCTCAAGTAATGCTAACTTACAA
50626487 AAGAATTT
66 AAGAATTT
50626495 AATTTTT
1 AATTTTT
50626502 AAGAGATTCC
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 80 1.00
ACGTcount: A:0.34, C:0.21, G:0.05, T:0.40
Consensus pattern (73 bp):
AATTTTTTAGTTTCCACACCCCTAAACTTAATTCATTTCTCATCTCAAGTAATGCTAACTTACAA
AAGAATTT
Found at i:50629175 original size:27 final size:27
Alignment explanation
Indices: 50629134--50629220 Score: 108
Period size: 27 Copynumber: 3.2 Consensus size: 27
50629124 AAATGGCCAC
50629134 TAAAATTACTCAAATACCCTCGAAGGG
1 TAAAATTACTCAAATACCCTCGAAGGG
50629161 TAAAATTA-TCGAAATACCCTCGAAGGG
1 TAAAATTACTC-AAATACCCTCGAAGGG
* *
50629188 TAAAACTACTAAAATAGCCCT--ATAGGG
1 TAAAATTACTCAAATA-CCCTCGA-AGGG
50629215 TAAAAT
1 TAAAAT
50629221 GACCGTTATA
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
26 3 0.06
27 45 0.85
28 5 0.09
ACGTcount: A:0.44, C:0.18, G:0.15, T:0.23
Consensus pattern (27 bp):
TAAAATTACTCAAATACCCTCGAAGGG
Found at i:50629673 original size:30 final size:30
Alignment explanation
Indices: 50629615--50629728 Score: 137
Period size: 30 Copynumber: 3.9 Consensus size: 30
50629605 TACTATTTTC
50629615 GGCTAAGGCCCACA--CTGATACTGTATTG
1 GGCTAAGGCCCACACTCTGATACTGTATTG
* *
50629643 GGCTAAGGCCCACACTCTGTTACAGTATTG
1 GGCTAAGGCCCACACTCTGATACTGTATTG
* * *
50629673 GGCTATGGCCCACACTCTGCTACTGTATAG
1 GGCTAAGGCCCACACTCTGATACTGTATTG
* *
50629703 GGCTCAGGCCCAGA--CTGATACTGTAT
1 GGCTAAGGCCCACACTCTGATACTGTAT
50629729 GTTGTATGCC
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
28 25 0.34
30 49 0.66
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (30 bp):
GGCTAAGGCCCACACTCTGATACTGTATTG
Found at i:50638183 original size:18 final size:18
Alignment explanation
Indices: 50638156--50638350 Score: 156
Period size: 18 Copynumber: 10.8 Consensus size: 18
50638146 ATTTCATGTG
*
50638156 AACCTATGTTCTTATGCA
1 AACCTATGTTATTATGCA
* * *
50638174 AACTTATGTTATTATACG
1 AACCTATGTTATTATGCA
* **
50638192 AACCTATGATATTATGTG
1 AACCTATGTTATTATGCA
*
50638210 AACCTATGTTGTTATGCA
1 AACCTATGTTATTATGCA
* **
50638228 AACCTATGTTATCATGTG
1 AACCTATGTTATTATGCA
* * * * *
50638246 AGCTTATGTTATCATACG
1 AACCTATGTTATTATGCA
**
50638264 AACCTATGTTATTATGGG
1 AACCTATGTTATTATGCA
* **
50638282 AACCTATGTTGTTATGTG
1 AACCTATGTTATTATGCA
* *
50638300 AACCTATGTTATCATACA
1 AACCTATGTTATTATGCA
**
50638318 AACCTATGTTATTATGTG
1 AACCTATGTTATTATGCA
*
50638336 AACATATGTTATTAT
1 AACCTATGTTATTAT
50638351 ACGTGTCTTA
Statistics
Matches: 140, Mismatches: 37, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 140 1.00
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.41
Consensus pattern (18 bp):
AACCTATGTTATTATGCA
Found at i:50638195 original size:36 final size:36
Alignment explanation
Indices: 50638155--50638350 Score: 194
Period size: 36 Copynumber: 5.4 Consensus size: 36
50638145 TATTTCATGT
* * * *
50638155 GAACCTATGTTCTTATGCAAACTTATGTTATTATAC
1 GAACCTATGTTATTATGCGAACCTATGTTATTATGC
* * *
50638191 GAACCTATGATATTATGTGAACCTATGTTGTTATGC
1 GAACCTATGTTATTATGCGAACCTATGTTATTATGC
* * * * * * *
50638227 AAACCTATGTTATCATGTGAGCTTATGTTATCATAC
1 GAACCTATGTTATTATGCGAACCTATGTTATTATGC
* * *
50638263 GAACCTATGTTATTATGGGAACCTATGTTGTTATGT
1 GAACCTATGTTATTATGCGAACCTATGTTATTATGC
* * * *
50638299 GAACCTATGTTATCATACAAACCTATGTTATTATGT
1 GAACCTATGTTATTATGCGAACCTATGTTATTATGC
*
50638335 GAACATATGTTATTAT
1 GAACCTATGTTATTAT
50638351 ACGTGTCTTA
Statistics
Matches: 129, Mismatches: 31, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
36 129 1.00
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.40
Consensus pattern (36 bp):
GAACCTATGTTATTATGCGAACCTATGTTATTATGC
Found at i:50638228 original size:54 final size:54
Alignment explanation
Indices: 50638155--50638353 Score: 209
Period size: 54 Copynumber: 3.7 Consensus size: 54
50638145 TATTTCATGT
* * * * **
50638155 GAACCTATGTTCTTATGCAAACTTATGTTATTATACGAACCTATGATATTATGT
1 GAACCTATGTTATTATGCAAACCTATGTTATTATACGAACCTATGTTATCATAC
* * ** * *
50638209 GAACCTATGTTGTTATGCAAACCTATGTTATCATGTGAGCTTATGTTATCATAC
1 GAACCTATGTTATTATGCAAACCTATGTTATTATACGAACCTATGTTATCATAC
** * **
50638263 GAACCTATGTTATTATGGGAACCTATGTTGTTATGTGAACCTATGTTATCATAC
1 GAACCTATGTTATTATGCAAACCTATGTTATTATACGAACCTATGTTATCATAC
* ** *
50638317 AAACCTATGTTATTATGTGAACATATGTTATTATACG
1 GAACCTATGTTATTATGCAAACCTATGTTATTATACG
50638354 TGTCTTAATA
Statistics
Matches: 121, Mismatches: 24, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 121 1.00
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.40
Consensus pattern (54 bp):
GAACCTATGTTATTATGCAAACCTATGTTATTATACGAACCTATGTTATCATAC
Found at i:50647123 original size:44 final size:43
Alignment explanation
Indices: 50647075--50647548 Score: 283
Period size: 44 Copynumber: 10.9 Consensus size: 43
50647065 GATCCAAGGT
* *
50647075 TTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCGGC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTAT-GGC
* * * *
50647119 TTTAATCTGCTCCACTGTAACTTCAAGGAGATAAGATT-TGCC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTATGGC
* * * *
50647161 ATCTTCAGTCTGC-CTCACTGCAACTTCA-GGAGGATAAGA--ATAGA
1 -T-TT-AATCCGCTC-CACTGCAACTTCAGGGA-GATAAGATTATGGC
* * * * * * *
50647205 TGTGATCTGCTCTC-C-GCAACTTCAGAGAAATAAGATCTAAGGT
1 TTTAATCCGCTC-CACTGCAACTTCAGGGAGATAAGAT-TATGGC
* *
50647248 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTAAGGT
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGAT-TATGGC
*
50647292 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTAT-GGC
*** * *
50647336 TTTAATTTTCTCTACTGCAACTTCAGGGAGATAAGATT-TGCC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTATGGC
* * * *
50647378 ATCTTCAGTCTGC-CTCACTGCAACTTCA-GGAGGATAAGAATACAT-AC
1 -T-TT-AATCCGCTC-CACTGCAACTTCAGGGA-GATAAG-AT-TATGGC
* * * *
50647425 TTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA--GA
1 -T--TTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTATGGC
*** * * * *
50647469 TGCGATCTGCT-CTCTGCAACTTCAGGGAGATAGGATTATCAGC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTAT-GGC
* *
50647512 TTTAATCTGCTCCACTACAACTTCAGGGAGATAAGAT
1 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGAT
50647549 CTGCCATCTT
Statistics
Matches: 343, Mismatches: 58, Indels: 58
0.75 0.13 0.13
Matches are distributed among these distances:
40 39 0.11
41 14 0.04
42 9 0.03
43 29 0.08
44 165 0.48
45 48 0.14
46 3 0.01
47 28 0.08
48 8 0.02
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (43 bp):
TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTATGGC
Found at i:50647269 original size:84 final size:84
Alignment explanation
Indices: 50646999--50647283 Score: 290
Period size: 84 Copynumber: 3.3 Consensus size: 84
50646989 CTATTAGTCT
* *
50646999 GCTCCACTGCAACTTCAGGGAAATAAGAATAGATGCGATCTGCTCTCCGTAACTTCAGAGAAATA
1 GCTCCACTGCAACTTCAGGGAGATAAGAATAGATGTGATCTGCTCTCCGTAACTTCAGAGAAATA
*
50647064 AGATCCAAGGTTTTAATCC
66 AGATCTAAGGTTTTAATCC
* * * * * *
50647083 ACTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTC-CACTGTAACTTCA-AG
1 GCTCCACTGCAACTTCAGGGAGATAAGA--AT-AGATGTGATCTGCTCTC-C-GTAACTTCAGA-
* * **** * * *
50647146 GAGATAAGATTTGCCATCTTCAGTCT
60 GAAATAAGATCTAAGGT-TTTAATCC
*
50647172 GC-CTCACTGCAACTTCA-GGAGGATAAGAATAGATGTGATCTGCTCTCCGCAACTTCAGAGAAA
1 GCTC-CACTGCAACTTCAGGGA-GATAAGAATAGATGTGATCTGCTCTCCGTAACTTCAGAGAAA
50647235 TAAGATCTAAGGTTTTAATCC
64 TAAGATCTAAGGTTTTAATCC
50647256 GCTCCACTGCAACTTCAGGGAGATAAGA
1 GCTCCACTGCAACTTCAGGGAGATAAGA
50647284 TCTAAGGTTT
Statistics
Matches: 154, Mismatches: 34, Indels: 26
0.72 0.16 0.12
Matches are distributed among these distances:
84 52 0.34
85 23 0.15
86 16 0.10
87 15 0.10
88 23 0.15
89 25 0.16
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (84 bp):
GCTCCACTGCAACTTCAGGGAGATAAGAATAGATGTGATCTGCTCTCCGTAACTTCAGAGAAATA
AGATCTAAGGTTTTAATCC
Found at i:50647298 original size:173 final size:173
Alignment explanation
Indices: 50646994--50647329 Score: 516
Period size: 173 Copynumber: 1.9 Consensus size: 173
50646984 TTAATCTATT
*
50646994 AGTCTGCTCCACTGCAACTTCAGGGAAATAAGAATAGATGCGATCTGCTCTCCGTAACTTCAGAG
1 AGTCTGCTCCACTGCAACTTCAGGGAAATAAGAATAGATGCGATCTGCTCTCCGCAACTTCAGAG
* *
50647059 AAATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAA
66 AAATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAAGATTATAGGCTTTAA
* *
50647124 TCTGCTCCACTGTAACTTCAAGGAGATAAGATTTGCCATCTTC
131 TCCGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATCTTC
* *
50647167 AGTCTGC-CTCACTGCAACTTCA-GGAGGATAAGAATAGATGTGATCTGCTCTCCGCAACTTCAG
1 AGTCTGCTC-CACTGCAACTTCAGGGA-AATAAGAATAGATGCGATCTGCTCTCCGCAACTTCAG
* * *
50647230 AGAAATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATCTA-AGGTTT
64 AGAAATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAAGAT-TATAGGCTT
* *
50647294 TAATCCGCTCCACTGCAACTTCAGGGAGATAGGATT
128 TAATCCGCTCCACTGCAACTTCAAGGAGATAAGATT
50647330 ATCGGCTTTA
Statistics
Matches: 148, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
172 4 0.03
173 142 0.96
174 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (173 bp):
AGTCTGCTCCACTGCAACTTCAGGGAAATAAGAATAGATGCGATCTGCTCTCCGCAACTTCAGAG
AAATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAAGATTATAGGCTTTAA
TCCGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATCTTC
Found at i:50647516 original size:176 final size:180
Alignment explanation
Indices: 50647256--50647592 Score: 529
Period size: 176 Copynumber: 1.9 Consensus size: 180
50647246 GTTTTAATCC
* **
50647256 GCTCCACTGCAACTTCAGGGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGA
1 GCTCCACTGCAACTTCAGGGAGATAAGATCTAAGGATGCAATCCGCTCCACTGCAACTTCAGGGA
* * * * * *
50647321 GATAGGATTATCGGCTTTAATTTTCTCTACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAG
66 GATAGGATTATCAGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATCTGCCATCTTCAG
*
50647386 TCTGCCTCACTGCAACTTCAGGAGGATAAGAATACATACTTACTTAGTCT
131 TCTACCTCACTGCAACTTCAGGAGGATAAGAATACATACTTACTTAGTCT
* * *
50647436 GCTCCACTGCAACTTCAGGGAGATAAGA-CT-A-GATGCGATCTGCT-CTCTGCAACTTCAGGGA
1 GCTCCACTGCAACTTCAGGGAGATAAGATCTAAGGATGCAATCCGCTCCACTGCAACTTCAGGGA
50647497 GATAGGATTATCAGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATCTGCCATCTTCAG
66 GATAGGATTATCAGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATCTGCCATCTTCAG
50647562 TCTACCTCACTGCAACTTCAGGAGGATAAGA
131 TCTACCTCACTGCAACTTCAGGAGGATAAGA
50647593 CCCGATCTGT
Statistics
Matches: 144, Mismatches: 13, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
176 105 0.73
177 8 0.06
178 1 0.01
179 2 0.01
180 28 0.19
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (180 bp):
GCTCCACTGCAACTTCAGGGAGATAAGATCTAAGGATGCAATCCGCTCCACTGCAACTTCAGGGA
GATAGGATTATCAGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATCTGCCATCTTCAG
TCTACCTCACTGCAACTTCAGGAGGATAAGAATACATACTTACTTAGTCT
Found at i:50658220 original size:23 final size:24
Alignment explanation
Indices: 50658190--50658254 Score: 73
Period size: 22 Copynumber: 2.8 Consensus size: 24
50658180 ACTATATTGA
*
50658190 AATTTAAAATAAATTAAAGAA-CG
1 AATTTAAAATAAATTAAAAAACCG
*
50658213 AATTTAAAAATAAA--AAAAAACCT
1 AATTT-AAAATAAATTAAAAAACCG
*
50658236 AATTGAAAATAAATTAAAA
1 AATTTAAAATAAATTAAAA
50658255 GGCGGAGGGG
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
22 13 0.37
23 10 0.29
24 12 0.34
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.25
Consensus pattern (24 bp):
AATTTAAAATAAATTAAAAAACCG
Found at i:50660181 original size:22 final size:21
Alignment explanation
Indices: 50660150--50660191 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
50660140 TTCACTTCCT
*
50660150 TCATTCTCTTCCTCCCTTTTTC
1 TCATTCTCTTCAT-CCTTTTTC
*
50660172 TCATTTTCTTCATCCTTTTT
1 TCATTCTCTTCATCCTTTTT
50660192 GCATCAGCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.07, C:0.33, G:0.00, T:0.60
Consensus pattern (21 bp):
TCATTCTCTTCATCCTTTTTC
Found at i:50661766 original size:63 final size:63
Alignment explanation
Indices: 50661667--50661793 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
50661657 TTAAAACTTA
50661667 ACTAAAATGCTTATGTTCAAGCTCCTAAAGTGCAAAAACTAGTTTAATCTACTACACCGAATT
1 ACTAAAATGCTTATGTTCAAGCTCCTAAAGTGCAAAAACTAGTTTAATCTACTACACCGAATT
50661730 ACTAAAATGCTTATGTTCAAGCTCCTAAAGTGCAAAAACTAGTTTAATCTACTACACCGAATT
1 ACTAAAATGCTTATGTTCAAGCTCCTAAAGTGCAAAAACTAGTTTAATCTACTACACCGAATT
50661793 A
1 A
50661794 GGATAGATCA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (63 bp):
ACTAAAATGCTTATGTTCAAGCTCCTAAAGTGCAAAAACTAGTTTAATCTACTACACCGAATT
Found at i:50663482 original size:17 final size:17
Alignment explanation
Indices: 50663460--50663495 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
50663450 ATCTATTGCG
50663460 TTTGTTCCACTCTTTAA
1 TTTGTTCCACTCTTTAA
50663477 TTTGTTCCACTCTTTAA
1 TTTGTTCCACTCTTTAA
50663494 TT
1 TT
50663496 CGTTTAGCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.17, C:0.22, G:0.06, T:0.56
Consensus pattern (17 bp):
TTTGTTCCACTCTTTAA
Found at i:50665638 original size:13 final size:13
Alignment explanation
Indices: 50665620--50665649 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
50665610 CACACGGCTG
50665620 TGTGAGTAGGCCA
1 TGTGAGTAGGCCA
*
50665633 TGTGAGTAGGCTA
1 TGTGAGTAGGCCA
50665646 TGTG
1 TGTG
50665650 TGGCACACGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.10, G:0.40, T:0.30
Consensus pattern (13 bp):
TGTGAGTAGGCCA
Found at i:50668978 original size:230 final size:230
Alignment explanation
Indices: 50668558--50669018 Score: 805
Period size: 230 Copynumber: 2.0 Consensus size: 230
50668548 ATAAGAACAC
50668558 TACAAGAAGAGCTCATGTTAACTTGTTCTCCTACCTTAATTTTCCTACGCCTAGACATGATTTCC
1 TACAAGAAGAGCTCATGTTAACTTGTTCTCCTACCTTAATTTTCCTACGCCTAGACATGATTTCC
50668623 TTTAAAATTTTGGCATACTTAGGAACTTTTTCAATCAAATACAGGTTGACATCTAATGTTTTGAA
66 TTTAAAATTTTGGCATACTTAGGAACTTTTTCAATCAAATACAGGTTGACATCTAATGTTTTGAA
* *
50668688 CAAGTTTAAAAAACTTACAACCTCGTTTCCATCCCACTTTTATTTCTCTTTTAGCCTTGAAGGGT
131 CAAGTTTAAAAAACTTACAACCTCGTTTCCATCCCACTTTTATTTCTCTTCTAACCTTGAAGGGT
* * *
50668753 ATGGTATCTTTACAACGGTAGAATCTTTAATTGTT
196 ACGGTATCTTTACAACAGCAGAATCTTTAATTGTT
* * * *
50668788 TACAATAAGTGCTCATGTTAACTTGTTCTCTTACCTTAATTTTCCTATGCCTAGACATGATTTCC
1 TACAAGAAGAGCTCATGTTAACTTGTTCTCCTACCTTAATTTTCCTACGCCTAGACATGATTTCC
** *
50668853 TTTAAAATTTTGGCATACTTAGGAACTTTTTCAATCAAATGTAGGTTGACATCTAATTTTTTGAA
66 TTTAAAATTTTGGCATACTTAGGAACTTTTTCAATCAAATACAGGTTGACATCTAATGTTTTGAA
50668918 CAAGTTTAAAAAACTTACAACCTCGTTTCCATCCCACTTTTATTTCTCTTCTAACCTTGAAGGGT
131 CAAGTTTAAAAAACTTACAACCTCGTTTCCATCCCACTTTTATTTCTCTTCTAACCTTGAAGGGT
*
50668983 ACGGTATCTTTGCAACAGCAGAATCTTTAATTGTT
196 ACGGTATCTTTACAACAGCAGAATCTTTAATTGTT
50669018 T
1 T
50669019 CTATCTCTAG
Statistics
Matches: 218, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
230 218 1.00
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (230 bp):
TACAAGAAGAGCTCATGTTAACTTGTTCTCCTACCTTAATTTTCCTACGCCTAGACATGATTTCC
TTTAAAATTTTGGCATACTTAGGAACTTTTTCAATCAAATACAGGTTGACATCTAATGTTTTGAA
CAAGTTTAAAAAACTTACAACCTCGTTTCCATCCCACTTTTATTTCTCTTCTAACCTTGAAGGGT
ACGGTATCTTTACAACAGCAGAATCTTTAATTGTT
Found at i:50669204 original size:24 final size:24
Alignment explanation
Indices: 50669168--50669213 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
50669158 TTCCGGTCAA
50669168 TCGCTATTACTTCCACATGCTCCT
1 TCGCTATTACTTCCACATGCTCCT
*
50669192 TCGCTATTGCTTCCACATGCTC
1 TCGCTATTACTTCCACATGCTC
50669214 ATTCCCTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.15, C:0.37, G:0.11, T:0.37
Consensus pattern (24 bp):
TCGCTATTACTTCCACATGCTCCT
Found at i:50681939 original size:27 final size:27
Alignment explanation
Indices: 50681909--50681961 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
50681899 TAGTGAAGAC
*
50681909 GGGGTAGTCCACT-GGGACATTAAACAT
1 GGGGTAGCCCACTAGGG-CATTAAACAT
50681936 GGGGTAGCCCACTAGGGCATTAAACA
1 GGGGTAGCCCACTAGGGCATTAAACA
50681962 CGAGTGGTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 21 0.88
28 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.30, T:0.19
Consensus pattern (27 bp):
GGGGTAGCCCACTAGGGCATTAAACAT
Found at i:50685848 original size:16 final size:15
Alignment explanation
Indices: 50685833--50685892 Score: 50
Period size: 15 Copynumber: 4.1 Consensus size: 15
50685823 TTTTAATATT
50685833 TTATAT-TATTTTTA
1 TTATATATATTTTTA
**
50685847 TTATATATATTTGAA
1 TTATATATATTTTTA
* *
50685862 TTATTTATATGTTTA
1 TTATATATATTTTTA
* * *
50685877 TAATTTTTATTTTTA
1 TTATATATATTTTTA
50685892 T
1 T
50685893 ATAAATTTGA
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
14 6 0.17
15 30 0.83
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (15 bp):
TTATATATATTTTTA
Found at i:50685920 original size:42 final size:43
Alignment explanation
Indices: 50685847--50685929 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 43
50685837 ATTATTTTTA
* ***
50685847 TTATATATATTTGAATTATTTATATGTTTATAAT-TTTTATTT
1 TTATATAAATTTGAATTATTTATAAAATTATAATATTTTATTT
*
50685889 TTATATAAATTTGAATTATTTATAAAATTATACTATTTTAT
1 TTATATAAATTTGAATTATTTATAAAATTATAATATTTTAT
50685930 AATATATTAC
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
42 29 0.83
43 6 0.17
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.59
Consensus pattern (43 bp):
TTATATAAATTTGAATTATTTATAAAATTATAATATTTTATTT
Found at i:50685936 original size:42 final size:42
Alignment explanation
Indices: 50685833--50685936 Score: 113
Period size: 42 Copynumber: 2.5 Consensus size: 42
50685823 TTTTAATATT
* * ***
50685833 TTATATTATTTT-TATTATATATATTTGAATTATTTATATGT
1 TTATAATATTTTATATTATATAAATTTGAATTATTTATAAAA
*
50685874 TTATAAT-TTTTATTTTTATATAAATTTGAATTATTTATAAAA
1 TTATAATATTTTA-TATTATATAAATTTGAATTATTTATAAAA
* *
50685916 TTATACTATTTTATAATATAT
1 TTATAATATTTTATATTATAT
50685937 TACTTATATA
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
40 4 0.08
41 6 0.12
42 36 0.71
43 5 0.10
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.60
Consensus pattern (42 bp):
TTATAATATTTTATATTATATAAATTTGAATTATTTATAAAA
Found at i:50688681 original size:25 final size:25
Alignment explanation
Indices: 50688628--50688681 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
50688618 TGCATTAATT
* * * *
50688628 TTTTTAATATTTTTGTACAAATTAT
1 TTTTTAATATATTTATACAAACTAC
50688653 TTTTTAATATATTTATACAAACTAC
1 TTTTTAATATATTTATACAAACTAC
50688678 TTTT
1 TTTT
50688682 CTCAGTACTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.57
Consensus pattern (25 bp):
TTTTTAATATATTTATACAAACTAC
Found at i:50688925 original size:34 final size:33
Alignment explanation
Indices: 50688879--50688976 Score: 144
Period size: 34 Copynumber: 2.9 Consensus size: 33
50688869 ATTATTTTTA
50688879 AAAACCC-AAAACCTTAATTTAATTAATTTTCTT
1 AAAACCCTAAAACC-TAATTTAATTAATTTTCTT
* *
50688912 AAAACCCTTAAACCCTAATTTAATTAATTTACTT
1 AAAACCC-TAAAACCTAATTTAATTAATTTTCTT
50688946 AAAACCCCTAAAACCTAATTTAATTAATTTT
1 AAAA-CCCTAAAACCTAATTTAATTAATTTT
50688977 TATAAAATTC
Statistics
Matches: 58, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
33 7 0.12
34 43 0.74
35 8 0.14
ACGTcount: A:0.43, C:0.19, G:0.00, T:0.38
Consensus pattern (33 bp):
AAAACCCTAAAACCTAATTTAATTAATTTTCTT
Found at i:50688983 original size:34 final size:33
Alignment explanation
Indices: 50688873--50688983 Score: 143
Period size: 34 Copynumber: 3.3 Consensus size: 33
50688863 AACACAATTA
*
50688873 TTTTTAAAAACCC-AAAACCTTAATTTAATTAAT
1 TTTTTAAAACCCCTAAAACC-TAATTTAATTAAT
* *
50688906 TTTCTTAAAACCCTTAAACCCTAATTTAATTAAT
1 TTT-TTAAAACCCCTAAAACCTAATTTAATTAAT
*
50688940 TTACTTAAAACCCCTAAAACCTAATTTAATTAAT
1 TT-TTTAAAACCCCTAAAACCTAATTTAATTAAT
50688974 TTTTATAAAA
1 TTTT-TAAAA
50688984 TTCTAAACAT
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
33 4 0.06
34 58 0.87
35 5 0.07
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (33 bp):
TTTTTAAAACCCCTAAAACCTAATTTAATTAAT
Found at i:50689195 original size:14 final size:14
Alignment explanation
Indices: 50689173--50689204 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
50689163 ATTTCAGCAA
*
50689173 AGCGTGTCCACGTC
1 AGCGCGTCCACGTC
50689187 AGCGCGTCCACGTC
1 AGCGCGTCCACGTC
50689201 AGCG
1 AGCG
50689205 TGTTTTTTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.16, C:0.38, G:0.31, T:0.16
Consensus pattern (14 bp):
AGCGCGTCCACGTC
Found at i:50689435 original size:18 final size:19
Alignment explanation
Indices: 50689422--50689466 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
50689412 AATTTTTATT
50689422 TTTATATAAATTTTGAATTA
1 TTTATA-AAATTTTGAATTA
50689442 TTTATAAAATTTT--ATTAA
1 TTTATAAAATTTTGAATT-A
50689460 TTTATAA
1 TTTATAA
50689467 TATATGACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.12
18 8 0.33
19 7 0.29
20 6 0.25
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (19 bp):
TTTATAAAATTTTGAATTA
Found at i:50689593 original size:17 final size:18
Alignment explanation
Indices: 50689571--50689609 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
50689561 TTTTATTTTA
50689571 TTATATATTT-GAATTAT
1 TTATATATTTAGAATTAT
* *
50689588 TTATATGTTTATAATTAT
1 TTATATATTTAGAATTAT
50689606 TTAT
1 TTAT
50689610 GTTTTATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
TTATATATTTAGAATTAT
Found at i:50690588 original size:19 final size:19
Alignment explanation
Indices: 50690564--50690601 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
50690554 CTGTTTGGTT
50690564 GTTGAGAAAATTGGAGGAG
1 GTTGAGAAAATTGGAGGAG
50690583 GTTGAGAAAATTGGAGGAG
1 GTTGAGAAAATTGGAGGAG
50690602 AAGTAACTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.42, T:0.21
Consensus pattern (19 bp):
GTTGAGAAAATTGGAGGAG
Found at i:50691169 original size:159 final size:162
Alignment explanation
Indices: 50690900--50691265 Score: 472
Period size: 159 Copynumber: 2.3 Consensus size: 162
50690890 CAATTTACGT
* * ** **
50690900 GAAAGAAAGGTTTTGATGCTTACTGTGGGTTGTTGGATTCATCCTTCTTTATAGAAAATAAAGAA
1 GAAAGAAAGATTTTGATGTTTACAATGATTTGTTGGATTCAT-CTTCTTTATAGAAAATAAAGAA
* * * ** * *
50690965 TATGAATAAAAGGGATCATTTTAGGGTTTAATATTTTCTTGGTTTGATTTTGAATTGAATGTAGA
65 TATGAATAAAAGGGAACATTGTAAGGTTTAATATTCGCTTGGTTTGATTTTGAATTGAACGCAGA
* *
50691030 TACCTCAAGGTAAAGAATGAACATTGTTGAGAA
130 TACCTCAAGGTAAAGAATAAACATCGTTGAGAA
* * *
50691063 GAAATAAAGATTTTGATGTTTACAATGATTTGTTGGATTTAT-TTCTTTATATAAAATAAAG-A-
1 GAAAGAAAGATTTTGATGTTTACAATGATTTGTTGGATTCATCTTCTTTATAGAAAATAAAGAAT
* *
50691125 GTGATTAAAAGGGAACATTGTAAGGTTTAATATTCGCTTGGTTTGATTTTGAATTGAACGCAGAT
66 ATGAATAAAAGGGAACATTGTAAGGTTTAATATTCGCTTGGTTTGATTTTGAATTGAACGCAGAT
*
50691190 GCCTCAAGGTAAAGAATAAACATCGTTGAGAA
131 ACCTCAAGGTAAAGAATAAACATCGTTGAGAA
* *
50691222 GAAAGAAAGATTTTGATG--TCCTAGTGATTTGTTGGATTCATCTT
1 GAAAGAAAGATTTTGATGTTTAC-AATGATTTGTTGGATTCATCTT
50691266 TTTTCTATAT
Statistics
Matches: 176, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
157 2 0.01
158 17 0.10
159 104 0.59
160 1 0.01
161 18 0.10
163 34 0.19
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.37
Consensus pattern (162 bp):
GAAAGAAAGATTTTGATGTTTACAATGATTTGTTGGATTCATCTTCTTTATAGAAAATAAAGAAT
ATGAATAAAAGGGAACATTGTAAGGTTTAATATTCGCTTGGTTTGATTTTGAATTGAACGCAGAT
ACCTCAAGGTAAAGAATAAACATCGTTGAGAA
Found at i:50693223 original size:3 final size:3
Alignment explanation
Indices: 50693215--50693271 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
50693205 GACATGCTAG
50693215 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
50693263 ATT ATT ATT
1 ATT ATT ATT
50693272 TGGGGCAAAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:50693482 original size:22 final size:22
Alignment explanation
Indices: 50693457--50693512 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
50693447 AAATTATTTT
50693457 TTTTAATTTGAA-TTCTTATGTA
1 TTTTAATTTGAATTTCTTAT-TA
* *
50693479 TTTT-ATTGGCAATTTTTTATTA
1 TTTTAATTTG-AATTTCTTATTA
50693501 TTTTAATTTGAA
1 TTTTAATTTGAA
50693513 AATGCGCATA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 4 0.14
22 14 0.50
23 10 0.36
ACGTcount: A:0.27, C:0.04, G:0.09, T:0.61
Consensus pattern (22 bp):
TTTTAATTTGAATTTCTTATTA
Found at i:50697211 original size:2 final size:2
Alignment explanation
Indices: 50697204--50697234 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
50697194 CTTCTTCTTT
50697204 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
50697235 TTAAAATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:50702873 original size:41 final size:42
Alignment explanation
Indices: 50702679--50703093 Score: 129
Period size: 41 Copynumber: 9.7 Consensus size: 42
50702669 GGCTTCAATG
** * * *
50702679 TACTCCACTGTAACCACAGGGAGGTAAAACCTGA-TGCGATC
1 TACTCCACTGTAACTTCAGGGAGATAAGACCTGACTACGATC
* * **
50702720 TACTCTACTGTAACTTCAGTGAGATAAGATCCTTTGTTTTA--ATC
1 TACTCCACTGTAACTTCAGGGAGATAAGA-CC--TG-ACTACGATC
** * * * * *
50702764 CGCTCCACTATAA-TCTCAGGGAGATAGGATTACT-AGCTTCAATC
1 TACTCCACTGTAACT-TCAGGGAGATAAGA--CCTGA-CTACGATC
* *
50702808 TGCTCCGCTGTAA-TCTCAGGGAGATAAGACCTGA-TACGATC
1 TACTCCACTGTAACT-TCAGGGAGATAAGACCTGACTACGATC
* * * * * ***
50702849 TTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATC
1 TACTCCACTGTAACTTCAGGGAGATAAGA-CC-TGACTACGATC
** * * *
50702893 CGCTCCACTGTAATCTT-AGGGAGATAGGA--TTACTATCTTTAATC
1 TACTCCACTGTAA-CTTCAGGGAGATAAGACCTGACTA-C---GATC
* * *
50702937 TGCTCCGCTGTAA-TCTCAGGGAGATAAGATCTGAC-ACGATC
1 TACTCCACTGTAACT-TCAGGGAGATAAGACCTGACTACGATC
* * * ** *
50702978 TACTCTACTGTAACTTCAGAGAGATAAGATCTGAAGTTCTTTGGTC
1 TACTCCACTGTAACTTCAGGGAGATAAGACCTG-A---CTACGATC
** *
50703024 TGTTCCACTGTAA-TCTCAGGGAAATAAGACCTGA-TACGATC
1 TACTCCACTGTAACT-TCAGGGAGATAAGACCTGACTACGATC
* *
50703065 TACTCTACTGTAACTTCAGAGAGATAAGA
1 TACTCCACTGTAACTTCAGGGAGATAAGA
50703094 TCCTTTATTT
Statistics
Matches: 275, Mismatches: 67, Indels: 64
0.68 0.17 0.16
Matches are distributed among these distances:
40 4 0.01
41 107 0.39
42 12 0.04
43 6 0.02
44 105 0.38
45 9 0.03
46 32 0.12
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (42 bp):
TACTCCACTGTAACTTCAGGGAGATAAGACCTGACTACGATC
Found at i:50702880 original size:129 final size:129
Alignment explanation
Indices: 50702650--50703866 Score: 676
Period size: 129 Copynumber: 9.4 Consensus size: 129
50702640 CTCCGCAACG
* * * * * * * * *
50702650 TCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAACCTGATG
1 TCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATA
* * *
50702715 CGATCTACTCTACTGTAACTTCAGTGAGATAAGATCCTTTGTTTTAATCCGCTCCACTATAATC
66 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGTTTTAATCCGCTCCACTGTAATC
*
50702779 TCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATA
1 TCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATA
*
50702844 CGATCTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-TTTTAATCCGCTCCACTGTAATC
66 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCC-TTAGTTTTAATCCGCTCCACTGTAATC
* * * * * *
50702908 TTAGGGAGATAGGATTACTATCTTTAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACA
1 TCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATA
* ** * *
50702973 CGATCTACTCTACTGTAACTTCAGAGAGATAAGAT-CTGAAGTTCTTTGGTCTGTTCCACTGTAA
66 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT-TAG-T-TTTAATCCGCTCCACTGTAA
50703037 TC
128 TC
* * * * * * * * * *
50703039 TCAGGGAAATAAGA--CCT-GATACGATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCTTT
1 TCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAATC-TCAGGGAGATAAGA-CC-TG
*** ** * * * * * * * *
50703100 ATTTTAATCCGCTCAATTGTAA-TCTCA-AGGCGATAGGATTAC-TAGTTTCAATCTGCTCCGCT
63 A-TACGATCTACTCTACTGTAACT-TCAGA-GAGATAAGA-TCCTTAGTTTTAATCCGCTCCACT
50703162 GTAATC
124 GTAATC
* * ** * *
50703168 TCAGGGAGATAAG-TT-CTGAAATCCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCT
1 TCAGGGAGATAGGATTACT---A-GCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGACCT
* * * *
50703231 GGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTGGTTTTAATTCGCTCCACTGTA
62 GATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGTTTTAATCCGCTCCACTGTA
*
50703296 ATA
127 ATC
* * *
50703299 TCAGGGAGATAGGATTACTAGCTTCAATCTGCTTCGCTGTAATCTCAGGGAGATAAGATCTGAAA
1 TCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTG--A
* * ** * * * * *** * *
50703364 TTCTTCAGTCTGTTCCACTGTAA-TCTCAGGGAAATAAGA-CC-T-GGTGCGATCTGCTCTACTG
64 TAC--GA-TCTACTCTACTGTAACT-TCAGAGAGATAAGATCCTTAGTTTTAATCCGCTCCACTG
50703425 TAA-C
125 TAATC
** * * * * *
50703429 TTCAAAGAGATAAGA-T-CT---TTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACT-
1 -TCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGA--CCTG
* * ** * * ** * *
50703488 ATATTCAATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGAT-CTGTAATTCTTCGGTCTGTTCCA
63 ATA--CGATCTACTCTACTGTAACT-TCAGAGAGATAAGATCCT-TAGTT-TT-AATCCGCTCCA
*
50703551 CCGTAATC
122 CTGTAATC
* * * * * * * * *
50703559 TTAGGGAAATAAGA--CCTAG-TGCGATCTGCTCTACTGTAA-CTTCAGAGAGATAAGATCCT-T
1 TCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAATC-TCAGGGAGATAAGA-CCTGA
** * * * * * * *
50703619 TA--ATCCGCTCCACTGTAA-TCTCAGGGAGATAGGATTAC-TA-TATTCAATCTGCTCCGCTGT
64 TACGATCTACTCTACTGTAACT-TCAGAGAGATAAGA-TCCTTAGT-TTTAATCCGCTCCACTGT
50703679 AATC
126 AATC
* * * * ** * * *
50703683 TCAGGGAGATAAGATCTGCAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGG
1 TCAGGGAGATAGGAT-TACTA-GCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGA
* * * * *
50703748 TGCGATCTGCTCTATTGTAACTTCAGATAGATAAGATCC-----TTTAATCTGCTCCACTGTAAT
64 TACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGTTTTAATCCGCTCCACTGTAAT
50703808 C
129 C
** *
50703809 TCAGGGAGATAGGATTACTATATTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
1 TCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGA
50703867 TCTGCAATTC
Statistics
Matches: 843, Mismatches: 184, Indels: 127
0.73 0.16 0.11
Matches are distributed among these distances:
124 87 0.10
125 8 0.01
126 98 0.12
127 7 0.01
128 35 0.04
129 330 0.39
130 22 0.03
131 187 0.22
132 8 0.01
133 9 0.01
134 51 0.06
135 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (129 bp):
TCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATA
CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGTTTTAATCCGCTCCACTGTAATC
Found at i:50703252 original size:216 final size:213
Alignment explanation
Indices: 50702805--50703252 Score: 562
Period size: 216 Copynumber: 2.1 Consensus size: 213
50702795 ACTAGCTTCA
* * * *
50702805 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATACGATCTTCTCTACTGTAACTTCAGAG
1 ATCTACTCCACTGTAATCTCAGGGAAATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAG
* * * *
50702870 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTTAGGGAGATAGGATTACTATCTTTAA
66 AGATAAGATCCTTTATTTTAATCCGCTCAACTGTAATCTCAAGGAGATAGGATTACTATCTTCAA
*
50702935 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGA
131 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCCACTGTAACTTCAGAGA
* * *
50703000 GATAAGATCTGAAGTTCTTTG
196 AATAAGACCTG-AGTGC--TG
* **
50703021 GTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAG
1 ATCTACTCCACTGTAATCTCAGGGAAATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAG
* *
50703086 AGATAAGATCCTTTATTTTAATCCGCTCAATTGTAATCTCAAGGCGATAGGATTACTAGT-TTCA
66 AGATAAGATCCTTTATTTTAATCCGCTCAACTGTAATCTCAAGGAGATAGGATTACTA-TCTTCA
* * * **
50703150 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGTTCTGAAATCCTTCGGTCTGTTCCACTGTAA-TC
130 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTG--A--C-ACGATCTACTCCACTGTAACT-
*
50703214 TCAGGGAAATAAGACCTG-GTGC-G
189 TCAGAGAAATAAGACCTGAGTGCTG
*
50703237 ATCTACTCTACTGTAA
1 ATCTACTCCACTGTAA
50703253 CTTCAGAGAG
Statistics
Matches: 200, Mismatches: 25, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
216 164 0.82
217 1 0.00
218 1 0.00
219 3 0.01
220 2 0.01
221 29 0.14
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (213 bp):
ATCTACTCCACTGTAATCTCAGGGAAATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAG
AGATAAGATCCTTTATTTTAATCCGCTCAACTGTAATCTCAAGGAGATAGGATTACTATCTTCAA
TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCCACTGTAACTTCAGAGA
AATAAGACCTGAGTGCTG
Found at i:50703538 original size:170 final size:172
Alignment explanation
Indices: 50702682--50704086 Score: 1839
Period size: 170 Copynumber: 8.2 Consensus size: 172
50702672 TTCAATGTAC
* * ** * * * *
50702682 TCCACTGTAACCACAGGGAGGTAAAACCTGATGCGATCTACTCTACTGTAACTTCAGTGAGATAA
1 TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGAGAGATAA
* **
50702747 GATCCTTTGTTTTAATCCGCTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCT
66 GATCC--T-TTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATATTCAATCTGCT
* * *
50702812 CCGCTGTAATCTCAGGGAGATAAGACCTG--A---TACGATCT-T
128 CCGCTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTGT
* * * ** *** * * *
50702851 CTCTACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTT-AGGG
1 -TCCACTGTAATC-TCAGGGAAATAAGA-CC--TGGTGCGATCTGCTCTACTGTAA-CTTCAGAG
* * * * * * *
50702914 AGATAGGATTACTATCTTTAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA-T-CTGACA--CG
60 AGATAAGA-TCCT-T-TTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACT-ATATTCA
* ** * *
50702975 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCTG-AAGTTCTTTGGTCTGT
121 ATCTGCTCCGCTGTAATC-TCAGGGAGATAAGATCTGCAA-TTCTTCGGTCTGT
* * *
50703027 TCCACTGTAATCTCAGGGAAATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAA
1 TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGAGAGATAA
* * * *
50703092 GATCCTTTATTTTAATCCGCTCAATTGTAATCTCAAGGCGATAGGATTACTAGT-TTCAATCTGC
66 GATCC--T-TTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTA-TATTCAATCTGC
* * *
50703156 TCCGCTGTAATCTCAGGGAGATAAGTTCTGAAATCCTTCGGTCTGT
127 TCCGCTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTGT
*
50703202 TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAA
1 TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGAGAGATAA
* * **
50703267 GATCCTTGGTTTTAATTCGCTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCT
66 GATCC-T--TTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATATTCAATCTGCT
* * *
50703332 TCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCAGTCTGT
128 CCGCTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTGT
*
50703377 TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAAAGAGATAA
1 TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGAGAGATAA
50703442 GAT-C-TTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATATTCAATCTGCTCCG
66 GATCCTTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATATTCAATCTGCTCCG
*
50703505 CTGTAATCTCAGGGAGATAAGATCTGTAATTCTTCGGTCTGT
131 CTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTGT
* * *
50703547 TCCACCGTAATCTTAGGGAAATAAGACCTAGTGCGATCTGCTCTACTGTAACTTCAGAGAGATAA
1 TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGAGAGATAA
50703612 GATCC--TTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATATTCAATCTGCTCCG
66 GATCCTTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATATTCAATCTGCTCCG
50703675 CTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTGT
131 CTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTGT
* *
50703717 TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTATTGTAACTTCAGATAGATAA
1 TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGAGAGATAA
*
50703782 GATCC--TTTAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTATATTCAATCTGCTCCG
66 GATCCTTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATATTCAATCTGCTCCG
50703845 CTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTGT
131 CTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTGT
*
50703887 TCCACCGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGAGAGATAA
1 TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGAGAGATAA
50703952 GATCC--TTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATATTCAATCTGCTCCG
66 GATCCTTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATATTCAATCTGCTCCG
* *
50704015 CTGTAATCTCAGGGAGATAAGATCTACAATTCTTCGATCTGT
131 CTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTGT
**
50704057 TCCACCATAATCTCAGGGAAATAAGACCTG
1 TCCACTGTAATCTCAGGGAAATAAGACCTG
50704087 TATAATAAAC
Statistics
Matches: 1103, Mismatches: 103, Indels: 58
0.87 0.08 0.05
Matches are distributed among these distances:
169 2 0.00
170 663 0.60
171 11 0.01
172 58 0.05
173 62 0.06
174 12 0.01
175 290 0.26
176 5 0.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (172 bp):
TCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGAGAGATAA
GATCCTTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATATTCAATCTGCTCCG
CTGTAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTGT
Found at i:50705229 original size:21 final size:21
Alignment explanation
Indices: 50705203--50705249 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
50705193 GGTATAGCAG
50705203 GATCACCACATGCCCCAATAT
1 GATCACCACATGCCCCAATAT
** * *
50705224 GATCACTTCATGCCCCATTCT
1 GATCACCACATGCCCCAATAT
50705245 GATCA
1 GATCA
50705250 ATATTTGAGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.36, G:0.11, T:0.26
Consensus pattern (21 bp):
GATCACCACATGCCCCAATAT
Found at i:50706217 original size:6 final size:6
Alignment explanation
Indices: 50706206--50706242 Score: 56
Period size: 6 Copynumber: 5.8 Consensus size: 6
50706196 TGACCTCTCC
50706206 TTTTCT TTTTCT TTTTCTT TTTTCT TCTTTCT TTTTC
1 TTTTCT TTTTCT TTTTC-T TTTTCT T-TTTCT TTTTC
50706243 CCCTATTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 17 0.59
7 12 0.41
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTCT
Found at i:50706229 original size:13 final size:13
Alignment explanation
Indices: 50706206--50706241 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
50706196 TGACCTCTCC
50706206 TTTTC-TTTTTCT
1 TTTTCTTTTTTCT
50706218 TTTTCTTTTTTCT
1 TTTTCTTTTTTCT
50706231 TCTTTCTTTTT
1 T-TTTCTTTTT
50706242 CCCCTATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 5 0.23
13 8 0.36
14 9 0.41
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTCTTTTTTCT
Found at i:50706291 original size:9 final size:9
Alignment explanation
Indices: 50706265--50706310 Score: 69
Period size: 9 Copynumber: 5.2 Consensus size: 9
50706255 CTTTGATTGA
50706265 TTGATTTTT
1 TTGATTTTT
50706274 TT--TTATTT
1 TTGATT-TTT
50706282 TTGATTTTT
1 TTGATTTTT
50706291 TTGATTTTT
1 TTGATTTTT
50706300 TTGATTTTT
1 TTGATTTTT
50706309 TT
1 TT
50706311 TTGAGTCTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
7 2 0.06
8 5 0.15
9 25 0.74
10 2 0.06
ACGTcount: A:0.11, C:0.00, G:0.09, T:0.80
Consensus pattern (9 bp):
TTGATTTTT
Found at i:50708392 original size:19 final size:20
Alignment explanation
Indices: 50708363--50708411 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
50708353 CACTTCGTGA
* *
50708363 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
50708382 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
50708402 AAATG-AATGC
1 AAATGTAATGC
50708412 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:50714451 original size:16 final size:16
Alignment explanation
Indices: 50714427--50714478 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
50714417 TAATTCACTA
*
50714427 TAATGGAATAGGGTTG
1 TAATGGAATAGAGTTG
*
50714443 TAATTGAATAGAGTTG
1 TAATGGAATAGAGTTG
*
50714459 TAATGGAATAGAGCTG
1 TAATGGAATAGAGTTG
50714475 TAAT
1 TAAT
50714479 CAGTAATTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.37, C:0.02, G:0.29, T:0.33
Consensus pattern (16 bp):
TAATGGAATAGAGTTG
Found at i:50714682 original size:26 final size:25
Alignment explanation
Indices: 50714633--50714683 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
50714623 ATGATTATTG
*
50714633 TTATTGTTATTAAATTTTAATAAAA
1 TTATTGTTAATAAATTTTAATAAAA
* *
50714658 TTATTGTTAAATATATTTTATTAAAA
1 TTATTGTT-AATAAATTTTAATAAAA
50714684 ATAATAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (25 bp):
TTATTGTTAATAAATTTTAATAAAA
Found at i:50726825 original size:36 final size:36
Alignment explanation
Indices: 50726774--50726853 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
50726764 ATGATGACTG
* * * *
50726774 ATGTGAAAGTGAATATGAGGGTGTGTTGTTCATAAC
1 ATGTGACAGTAAATATGAGGGTATGTTATTCATAAC
* **
50726810 ATGTGACAGTAAATATGTGGGTATGTTATTCATGCC
1 ATGTGACAGTAAATATGAGGGTATGTTATTCATAAC
50726846 ATGTGACA
1 ATGTGACA
50726854 ATAATTATAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.30, C:0.09, G:0.28, T:0.34
Consensus pattern (36 bp):
ATGTGACAGTAAATATGAGGGTATGTTATTCATAAC
Found at i:50732852 original size:99 final size:99
Alignment explanation
Indices: 50732681--50732882 Score: 377
Period size: 99 Copynumber: 2.0 Consensus size: 99
50732671 TCATCACTTC
* *
50732681 ATTTTTGAGTGTCAGATCTGCCAACAAATGAAGGATTCTTTCCTCCATCCAGCTGACCTATTACA
1 ATTTTTGAGTGCCAGATCTGCCAACAAATGAAGGATTCTTTCCTCCATCCAGCCGACCTATTACA
50732746 ACCATTACCAATTTCGGAGTTGGTCTTTGAGGGT
66 ACCATTACCAATTTCGGAGTTGGTCTTTGAGGGT
*
50732780 ATTTTTGAGTGCCAGATCTGCCAACAAATGAAGGATTCTTTCCTCCATCTAGCCGACCTATTACA
1 ATTTTTGAGTGCCAGATCTGCCAACAAATGAAGGATTCTTTCCTCCATCCAGCCGACCTATTACA
50732845 ACCATTACCAATTTCGGAGTTGGTCTTTGAGGGT
66 ACCATTACCAATTTCGGAGTTGGTCTTTGAGGGT
50732879 ATTT
1 ATTT
50732883 CAATAGATTT
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
99 100 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (99 bp):
ATTTTTGAGTGCCAGATCTGCCAACAAATGAAGGATTCTTTCCTCCATCCAGCCGACCTATTACA
ACCATTACCAATTTCGGAGTTGGTCTTTGAGGGT
Found at i:50735323 original size:34 final size:35
Alignment explanation
Indices: 50735285--50735351 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
50735275 CAGTAAAATA
*
50735285 TTTTCCCTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCCTAAAATGATTTACTGGAAAATATTTTAC
**
50735319 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCCTAAAATGATTTACTGGAAAATATTTT
50735352 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCCTAAAATGATTTACTGGAAAATATTTTAC
Found at i:50735325 original size:20 final size:20
Alignment explanation
Indices: 50735300--50735339 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
50735290 CCTAAAATGA
*
50735300 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
50735320 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
50735340 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:50738610 original size:4 final size:4
Alignment explanation
Indices: 50738601--50738641 Score: 64
Period size: 4 Copynumber: 10.2 Consensus size: 4
50738591 AGTTAATCTA
* *
50738601 ACAT ACAT ACAT GCAT GCAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
50738642 TATAAATAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.46, C:0.24, G:0.05, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:50746704 original size:40 final size:39
Alignment explanation
Indices: 50746616--50746775 Score: 153
Period size: 39 Copynumber: 4.1 Consensus size: 39
50746606 TATTATAGAT
* * * *
50746616 TATAACGAGATCTAGCATTTATTACAGATTCTCGGGAAA
1 TATAATGAGATCTAGCCTTTATTGCAGATTCTCGGGTAA
* *
50746655 TATAATGAGATTTAGCCTTTGTTGCAGATTCTCGGGGTAA
1 TATAATGAGATCTAGCCTTTATTGCAGATTCTC-GGGTAA
* * * *
50746695 TATAATGAGATCTATCCTCTATTGCAGATTCTCAGATAA
1 TATAATGAGATCTAGCCTTTATTGCAGATTCTCGGGTAA
* * * * *
50746734 TATAATAAGATCCAACC-TTGTTG-AGAATTCTCGAGTAA
1 TATAATGAGATCTAGCCTTTATTGCAG-ATTCTCGGGTAA
50746772 TATA
1 TATA
50746776 TGACATAGGT
Statistics
Matches: 99, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
37 2 0.02
38 17 0.17
39 46 0.46
40 34 0.34
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.34
Consensus pattern (39 bp):
TATAATGAGATCTAGCCTTTATTGCAGATTCTCGGGTAA
Found at i:50746773 original size:38 final size:38
Alignment explanation
Indices: 50746640--50746775 Score: 114
Period size: 40 Copynumber: 3.5 Consensus size: 38
50746630 GCATTTATTA
* * * ** *
50746640 CAGATTCTCGGGAAATATAATGAGATTTAGCCTTTGTTG
1 CAGATTCTCGAGTAATATAATAAGATCCAACC-TTGTTG
* * * * *
50746679 CAGATTCTCGGGGTAATATAATGAGATCTATCCTCTATTG
1 CAGATTCTC-GAGTAATATAATAAGATCCAACCT-TGTTG
50746719 CAGATTCTC-AGATAATATAATAAGATCCAACCTTGTTG
1 CAGATTCTCGAG-TAATATAATAAGATCCAACCTTGTTG
50746757 -AGAATTCTCGAGTAATATA
1 CAG-ATTCTCGAGTAATATA
50746776 TGACATAGGT
Statistics
Matches: 83, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
37 2 0.02
38 18 0.22
39 30 0.36
40 33 0.40
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.34
Consensus pattern (38 bp):
CAGATTCTCGAGTAATATAATAAGATCCAACCTTGTTG
Found at i:50749152 original size:13 final size:13
Alignment explanation
Indices: 50749132--50749189 Score: 71
Period size: 13 Copynumber: 4.5 Consensus size: 13
50749122 TTTAAATGTT
*
50749132 CATTTCATATATC
1 CATTTCATATAAC
*
50749145 CATGTCATATAAC
1 CATTTCATATAAC
* *
50749158 CATTTCGTAGAAC
1 CATTTCATATAAC
*
50749171 CATTTCATATATC
1 CATTTCATATAAC
50749184 CATTTC
1 CATTTC
50749190 CACCCGATGA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 37 1.00
ACGTcount: A:0.31, C:0.24, G:0.05, T:0.40
Consensus pattern (13 bp):
CATTTCATATAAC
Found at i:50753728 original size:29 final size:29
Alignment explanation
Indices: 50753695--50753756 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
50753685 ACTGATATTT
*
50753695 ACATCTCACAATTTTCTCTCTCAAGACTA
1 ACATCTCACAACTTTCTCTCTCAAGACTA
50753724 ACATCTCACAACTTTCTCTCTCAAGACTA
1 ACATCTCACAACTTTCTCTCTCAAGACTA
50753753 ACAT
1 ACAT
50753757 AACACGTGGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.32, C:0.32, G:0.03, T:0.32
Consensus pattern (29 bp):
ACATCTCACAACTTTCTCTCTCAAGACTA
Found at i:50764418 original size:51 final size:51
Alignment explanation
Indices: 50764355--50764455 Score: 159
Period size: 51 Copynumber: 2.0 Consensus size: 51
50764345 CACATGACAC
* * *
50764355 CTGTACTGTCTGACTTTGACTAGCAGTTGAGACACCTTGATTACAAGCCAA
1 CTGTACTGTCTGACTTTGACTAGAAGTCGAGACACCTTGATTAAAAGCCAA
50764406 CTGTAC-GTTCTGACTTTGACTAGAAGTCGAGACACCTTGATTAAAAGCCA
1 CTGTACTG-TCTGACTTTGACTAGAAGTCGAGACACCTTGATTAAAAGCCA
50764456 CCTGGACATC
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 1 0.02
51 45 0.98
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (51 bp):
CTGTACTGTCTGACTTTGACTAGAAGTCGAGACACCTTGATTAAAAGCCAA
Found at i:50764472 original size:51 final size:51
Alignment explanation
Indices: 50764366--50764474 Score: 146
Period size: 51 Copynumber: 2.1 Consensus size: 51
50764356 TGTACTGTCT
* * * * * * *
50764366 GACTTTGACTAGCAGTTGAGACACCTTGATTACAAGCCAACTGTACGTTCT
1 GACTTTGACTAGAAGTCGAGACACCTTGATTAAAAGCCAACTGGACATCCG
*
50764417 GACTTTGACTAGAAGTCGAGACACCTTGATTAAAAGCCACCTGGACATCCG
1 GACTTTGACTAGAAGTCGAGACACCTTGATTAAAAGCCAACTGGACATCCG
50764468 GACTTTG
1 GACTTTG
50764475 TCTAAGAGTA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (51 bp):
GACTTTGACTAGAAGTCGAGACACCTTGATTAAAAGCCAACTGGACATCCG
Found at i:50767722 original size:19 final size:17
Alignment explanation
Indices: 50767690--50767727 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 17
50767680 TACAAAGGAC
50767690 AAAGAAAACAAAAGAAA
1 AAAGAAAACAAAAGAAA
50767707 AAAGAAGAATCAAAAGAAA
1 AAAGAA-AA-CAAAAGAAA
50767726 AA
1 AA
50767728 CCTCTAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.32
18 2 0.11
19 11 0.58
ACGTcount: A:0.79, C:0.05, G:0.13, T:0.03
Consensus pattern (17 bp):
AAAGAAAACAAAAGAAA
Found at i:50769106 original size:12 final size:13
Alignment explanation
Indices: 50769089--50769149 Score: 67
Period size: 12 Copynumber: 5.0 Consensus size: 13
50769079 ATCATTAATA
50769089 AATAAACGAG-TT
1 AATAAACGAGCTT
50769101 AATAAACGAGCTT
1 AATAAACGAGCTT
*
50769114 -ATAAACGAGC-C
1 AATAAACGAGCTT
*
50769125 AATAAATGAGCTT
1 AATAAACGAGCTT
*
50769138 -TTAAACGAGCTT
1 AATAAACGAGCTT
50769150 GTTAGTGAAC
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
12 39 0.95
13 2 0.05
ACGTcount: A:0.44, C:0.15, G:0.16, T:0.25
Consensus pattern (13 bp):
AATAAACGAGCTT
Found at i:50769117 original size:24 final size:24
Alignment explanation
Indices: 50769090--50769147 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
50769080 TCATTAATAA
**
50769090 ATAAACGAGTTAATAAACGAGCTT
1 ATAAACGAGCCAATAAACGAGCTT
*
50769114 ATAAACGAGCCAATAAATGAGCTT
1 ATAAACGAGCCAATAAACGAGCTT
*
50769138 TTAAACGAGC
1 ATAAACGAGC
50769148 TTGTTAGTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.45, C:0.16, G:0.17, T:0.22
Consensus pattern (24 bp):
ATAAACGAGCCAATAAACGAGCTT
Found at i:50772378 original size:21 final size:23
Alignment explanation
Indices: 50772336--50772378 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
50772326 TTTATTAATT
*
50772336 CATAATATTTTTATGTTATATTG
1 CATAATATTTCTATGTTATATTG
*
50772359 CATAAT-TTTCTA-GTTGTATT
1 CATAATATTTCTATGTTATATT
50772379 ATCATGATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 5 0.28
23 6 0.33
ACGTcount: A:0.28, C:0.07, G:0.09, T:0.56
Consensus pattern (23 bp):
CATAATATTTCTATGTTATATTG
Found at i:50774870 original size:36 final size:36
Alignment explanation
Indices: 50774823--50774972 Score: 156
Period size: 36 Copynumber: 3.9 Consensus size: 36
50774813 GCTAAGCTAC
50774823 CACTTATCACTTTGTCACTTGATCAGATAAGTATAA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAA
*
50774859 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTA
1 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--T--A---A
* * *
50774904 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAG
1 -CACTTATCACTTTGTCACTTGATCAGATAAGTATAA
* *
50774941 TACTTATCACTTTCTCACTTGATCAGATAAGT
1 CACTTATCACTTTGTCACTTGATCAGATAAGT
50774973 GTAGCTAAAG
Statistics
Matches: 96, Mismatches: 8, Indels: 20
0.77 0.06 0.16
Matches are distributed among these distances:
36 58 0.60
38 3 0.03
40 2 0.02
42 2 0.02
44 2 0.02
45 1 0.01
46 28 0.29
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (36 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAA
Found at i:50774910 original size:46 final size:46
Alignment explanation
Indices: 50774859--50775013 Score: 195
Period size: 46 Copynumber: 3.6 Consensus size: 46
50774849 ATAAGTATAA
*
50774859 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
50774905 CACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T--AG-T--
1 CACTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
50774942 -ACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
50774987 CACTTATCACTTTATCTCTTGATCAGA
1 CACTTATCACTTTATCACTTGATCAGA
50775014 AGTACTCAAA
Statistics
Matches: 93, Mismatches: 6, Indels: 20
0.78 0.05 0.17
Matches are distributed among these distances:
36 27 0.29
38 2 0.02
39 2 0.02
40 3 0.03
42 3 0.03
43 2 0.02
44 2 0.02
46 52 0.56
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (46 bp):
CACTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:50774918 original size:82 final size:82
Alignment explanation
Indices: 50774780--50775013 Score: 375
Period size: 82 Copynumber: 2.9 Consensus size: 82
50774770 TACGTATGGT
* * *
50774780 CACTTATCA-TTTGTC-CCTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTTTGTCACT
1 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
50774842 TGATCAGATAAGTATAA
66 TGATCAGATAAGTATAA
*
50774859 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
1 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
* *
50774924 TGATCAGATAAGTGTAG
66 TGATCAGATAAGTATAA
* *
50774941 TACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCTCT
1 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
50775006 TGATCAGA
66 TGATCAGA
50775014 AGTACTCAAA
Statistics
Matches: 144, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
79 9 0.06
80 5 0.03
81 20 0.14
82 110 0.76
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (82 bp):
CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
TGATCAGATAAGTATAA
Found at i:50778692 original size:20 final size:20
Alignment explanation
Indices: 50778665--50778742 Score: 97
Period size: 20 Copynumber: 3.9 Consensus size: 20
50778655 AAGTGTAGAA
50778665 AAAGGCA-CAAATGTGCAATC
1 AAAGGCACCAAA-GTGCAATC
* **
50778685 AGAGGCACCAAAGTGCAAGA
1 AAAGGCACCAAAGTGCAATC
50778705 AAAGGCA-CAAATGTGCAATC
1 AAAGGCACCAAA-GTGCAATC
50778725 AAAGGCACCAAAGTGCAA
1 AAAGGCACCAAAGTGCAA
50778743 ACCTGTACAA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
19 4 0.08
20 37 0.76
21 8 0.16
ACGTcount: A:0.46, C:0.21, G:0.23, T:0.10
Consensus pattern (20 bp):
AAAGGCACCAAAGTGCAATC
Found at i:50778708 original size:40 final size:40
Alignment explanation
Indices: 50778664--50778742 Score: 149
Period size: 40 Copynumber: 2.0 Consensus size: 40
50778654 GAAGTGTAGA
*
50778664 AAAAGGCACAAATGTGCAATCAGAGGCACCAAAGTGCAAG
1 AAAAGGCACAAATGTGCAATCAAAGGCACCAAAGTGCAAG
50778704 AAAAGGCACAAATGTGCAATCAAAGGCACCAAAGTGCAA
1 AAAAGGCACAAATGTGCAATCAAAGGCACCAAAGTGCAA
50778743 ACCTGTACAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.47, C:0.20, G:0.23, T:0.10
Consensus pattern (40 bp):
AAAAGGCACAAATGTGCAATCAAAGGCACCAAAGTGCAAG
Found at i:50780211 original size:26 final size:26
Alignment explanation
Indices: 50780182--50780250 Score: 111
Period size: 26 Copynumber: 2.7 Consensus size: 26
50780172 CATTCTGACC
* *
50780182 CACAGCTCGTATGAGCAGGCCCATTT
1 CACAGCTCGTGTGAGCAGACCCATTT
*
50780208 CACAGCTCGTGTGAGCATACCCATTT
1 CACAGCTCGTGTGAGCAGACCCATTT
50780234 CACAGCTCGTGTGAGCA
1 CACAGCTCGTGTGAGCA
50780251 ACAATGTAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.23
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCAGACCCATTT
Found at i:50781999 original size:15 final size:15
Alignment explanation
Indices: 50781981--50782016 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
50781971 CTCAGCCACG
50781981 TGTGACACACGGCCC
1 TGTGACACACGGCCC
*
50781996 TGTGACACACGGCCG
1 TGTGACACACGGCCC
50782011 TGTGAC
1 TGTGAC
50782017 CCCTGTAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (15 bp):
TGTGACACACGGCCC
Found at i:50787468 original size:44 final size:45
Alignment explanation
Indices: 50787379--50787635 Score: 138
Period size: 44 Copynumber: 5.8 Consensus size: 45
50787369 ACTGCTGACC
* * * * * *
50787379 AGGGAGATAGAATT-ACTAGCTTCAATGTACTCCACT-GTAACCTT
1 AGGGAGATAAAATTCACCATCTTCAATCTATTCCACTACTAA-CTT
* *
50787423 AGGGAGGTAAAATTCACCATCTTCGATCTATTCCACTACT-ACTT
1 AGGGAGATAAAATTCACCATCTTCAATCTATTCCACTACTAACTT
* * * * *
50787467 AGGGAGATAAGATCTGTA--ATCTTCAATCTATTCCACTGCTGAC-C
1 AGGGAGATAAAAT-T-CACCATCTTCAATCTATTCCACTACTAACTT
* *** * * *
50787511 AGGGAGATAGAATT-ACTGGCTTCAATATACTCCACTA-TAACCTC
1 AGGGAGATAAAATTCACCATCTTCAATCTATTCCACTACTAA-CTT
** * * * *
50787555 AGGGAGGCACAATTCACCATCTTCGATCTACTCCACTACT-GCTT
1 AGGGAGATAAAATTCACCATCTTCAATCTATTCCACTACTAACTT
* * *
50787599 AGGGAGATAAGATCTGA-AATCTTCAATCTATTCCACT
1 AGGGAGATAAAAT-TCACCATCTTCAATCTATTCCACT
50787636 GTTGCCCAAG
Statistics
Matches: 161, Mismatches: 40, Indels: 24
0.72 0.18 0.11
Matches are distributed among these distances:
41 1 0.01
42 2 0.01
43 17 0.11
44 97 0.60
45 41 0.25
46 3 0.02
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (45 bp):
AGGGAGATAAAATTCACCATCTTCAATCTATTCCACTACTAACTT
Found at i:50787552 original size:132 final size:132
Alignment explanation
Indices: 50787309--50787668 Score: 551
Period size: 132 Copynumber: 2.7 Consensus size: 132
50787299 AGATTCGCCG
* * * *
50787309 TCTTCGATCTGCTTCGCTACTGCTTAGGGAGATAAGATCTGTAAT-TTCTAACCTATTCCAACTG
1 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC-AATCTATTCC-ACTG
* * * * *
50787373 CTGACCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCTTAGGGAGGTAAAATTC
64 CTGACCAGGGAGATAGAATTACTGGCTTCAATATACTCCACTATAACCTCAGGGAGGCAAAATTC
50787438 ACCA
129 ACCA
* *
50787442 TCTTCGATCTATTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
1 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
*
50787507 GACCAGGGAGATAGAATTACTGGCTTCAATATACTCCACTATAACCTCAGGGAGGCACAATTCAC
66 GACCAGGGAGATAGAATTACTGGCTTCAATATACTCCACTATAACCTCAGGGAGGCAAAATTCAC
50787572 CA
131 CA
* *
50787574 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTT
1 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
* *
50787639 GCCCAAGGAGATAGAATTACTGGCTTCAAT
66 GACCAGGGAGATAGAATTACTGGCTTCAAT
50787669 CTGCTCTATT
Statistics
Matches: 208, Mismatches: 18, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
132 156 0.75
133 49 0.24
134 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (132 bp):
TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
GACCAGGGAGATAGAATTACTGGCTTCAATATACTCCACTATAACCTCAGGGAGGCAAAATTCAC
CA
Found at i:50787690 original size:44 final size:44
Alignment explanation
Indices: 50787642--50787908 Score: 142
Period size: 44 Copynumber: 6.2 Consensus size: 44
50787632 CACTGTTGCC
* *
50787642 CAAGGAGATAGAATTACTGGCTTCAATCTGCTCTATTGTAATCT
1 CAAGGAGATAGAATTACTGGCTTCAATCTGCTCCACTGTAATCT
* **
50787686 CAAGGAGATA-AGATT--T--CTTCAGTCTATTCCACTGTAATCT
1 CAAGGAGATAGA-ATTACTGGCTTCAATCTGCTCCACTGTAATCT
* ** * * * * *
50787726 CAGGGAGATAAGACCTAAT-G---CGATCTACTCTACTGTAATTT
1 CAAGGAGAT-AGAATTACTGGCTTCAATCTGCTCCACTGTAATCT
* * *** * *
50787767 C-AGAGAGATA-AGATCATTTATTTTAATCTGCTCCATTGTAATCT
1 CAAG-GAGATAGA-ATTACTGGCTTCAATCTGCTCCACTGTAATCT
* * * *
50787811 CAAGGAAATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCT
1 CAAGGAGATAGAATTACTGGCTTCAATCTGCTCCACTGTAATCT
* * * * * *
50787855 CAGGGAGATAAAATTTCTGGCTTCAATCTACTCCGCTGTAACCT
1 CAAGGAGATAGAATTACTGGCTTCAATCTGCTCCACTGTAATCT
*
50787899 CAGGGAGATA
1 CAAGGAGATA
50787909 AGATTCTTCG
Statistics
Matches: 167, Mismatches: 42, Indels: 28
0.70 0.18 0.12
Matches are distributed among these distances:
39 1 0.01
40 31 0.19
41 24 0.14
42 2 0.01
43 2 0.01
44 105 0.63
45 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.32
Consensus pattern (44 bp):
CAAGGAGATAGAATTACTGGCTTCAATCTGCTCCACTGTAATCT
Found at i:50788197 original size:128 final size:128
Alignment explanation
Indices: 50788034--50788963 Score: 1400
Period size: 128 Copynumber: 7.2 Consensus size: 128
50788024 AGGGAGATTG
50788034 GATCTGTAATTTCCTAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGC
1 GATCTGTAATTTCC-AACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGC
* * * * *
50788099 TTCCTTACACTTGAAGATAAAATTTGCCGTCTTTGATCAGCTCCGCTATTGCTTAGGGAGACAA
65 TTCCTTACTCTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCCGCTACTGCTTAGGGAGACAA
* * * *
50788163 GATCTATAATTTCCAACCTATTCCACTACTGACCAGGAACATAGGACTTGTGGCTTAAATCTGCT
1 GATCTGTAATTTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCT
*
50788228 TCCTTACACTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCCGCTACTGCTTAGGGAGACAA
66 TCCTTACTCTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCCGCTACTGCTTAGGGAGACAA
*
50788291 GATCTGTAATTTCCCAACCTATTCCACTGCTGACTAGGGATATAGGACTTGTGGCTTAAATCTGC
1 GATCTGTAATTT-CCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGC
* * * *
50788356 TTCCTTACTCTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCTGCTATTGCTTAGGAAGATAA
65 TTCCTTACTCTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCCGCTACTGCTTAGGGAGACAA
* * *
50788420 GATCTGTAATTTCTAACCTATTCCACTGCTGACCAGGAACATAGGACTTGTGGCTTAAATCTGCT
1 GATCTGTAATTTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCT
* * * *
50788485 TCCTTACTCTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCTGCTATTGCTTAGGAAGATAA
66 TCCTTACTCTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCCGCTACTGCTTAGGGAGACAA
* *
50788548 GATCTGTAATTTCTAACCTATTCCACTGCTGACCAGGGACATAGGACTTGTGGCTTAAATCTGCT
1 GATCTGTAATTTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCT
* * * *
50788613 TCCTTACACTTTGAAGATAAGATTCACCGTCTTTGATC-ACTCTGCTACTGCTTAGGGAGACAA
66 TCCTTACTC-TTGAAGATAAGATTCGCCGTCTTTGATCTGCTCCGCTACTGCTTAGGGAGACAA
* * * *
50788676 GATCTGTAATTTCCAATCTATTCCACTGTTGACTAGGGATATAAGACTTGTGGCTTAAATCTGCT
1 GATCTGTAATTTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCT
* *
50788741 TCCTTACTCTTGAAGATAAGATTTGCCG-CTTTCGATCTACTCCGCTACTGCTTAGGGAGACAA
66 TCCTTACTCTTGAAGATAAGATTCGCCGTCTTT-GATCTGCTCCGCTACTGCTTAGGGAGACAA
* * * *
50788804 GATCTATAATTTCAAACCTATTCCACTGCTGACCAGGGATATAAGACTTGTGGCTTAAATCTTCT
1 GATCTGTAATTTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCT
** *
50788869 TCCTTACTCTTGAAGATAAGATTTTTCAC-T-TTTGATCTGCTCCGCTACTGCTTAAGGAGACAA
66 TCCTTACTCTTGAAGATAAGA-TTCGC-CGTCTTTGATCTGCTCCGCTACTGCTTAGGGAGACAA
50788932 GATCTGTAATTTCCCAACCTATTCCACTGCTG
1 GATCTGTAATTT-CCAACCTATTCCACTGCTG
50788964 GTCAAGGAGC
Statistics
Matches: 743, Mismatches: 50, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
126 4 0.01
127 21 0.03
128 533 0.72
129 184 0.25
130 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.33
Consensus pattern (128 bp):
GATCTGTAATTTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCT
TCCTTACTCTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCCGCTACTGCTTAGGGAGACAA
Found at i:50788324 original size:257 final size:256
Alignment explanation
Indices: 50788034--50788963 Score: 1400
Period size: 257 Copynumber: 3.6 Consensus size: 256
50788024 AGGGAGATTG
50788034 GATCTGTAATTTCCTAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGC
1 GATCTGTAATTT-CTAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGC
* *
50788099 TTCCTTACACTTGAAGATAAAATTTGCCGTCTTTGATCAGCTCCGCTATTGCTTAGGGAGACAAG
65 TTCCTTACACTTGAAGATAAAATTCGCCGTCTTTGATCAGCTCCGCTACTGCTTAGGGAGACAAG
* *
50788164 ATCTATAATTTCCAACCTATTCCACTACTGACCAGGAACATAGGACTTGTGGCTTAAATCTGCTT
130 ATCTGTAATTTCCAACCTATTCCACTGCTGACCAGGAACATAGGACTTGTGGCTTAAATCTGCTT
*
50788229 CCTTACACTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCCGCTACTGCTTAGGGAGACAA
195 CCTTACTCTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCCGCTACTGCTTAGGGAGACAA
* *
50788291 GATCTGTAATTTCCCAACCTATTCCACTGCTGACTAGGGATATAGGACTTGTGGCTTAAATCTGC
1 GATCTGTAATTT-CTAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGC
* * * * * * *
50788356 TTCCTTACTCTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCTGCTATTGCTTAGGAAGATAAG
65 TTCCTTACACTTGAAGATAAAATTCGCCGTCTTTGATCAGCTCCGCTACTGCTTAGGGAGACAAG
*
50788421 ATCTGTAATTTCTAACCTATTCCACTGCTGACCAGGAACATAGGACTTGTGGCTTAAATCTGCTT
130 ATCTGTAATTTCCAACCTATTCCACTGCTGACCAGGAACATAGGACTTGTGGCTTAAATCTGCTT
* * * *
50788486 CCTTACTCTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCTGCTATTGCTTAGGAAGATAA
195 CCTTACTCTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCCGCTACTGCTTAGGGAGACAA
*
50788548 GATCTGTAATTTCTAACCTATTCCACTGCTGACCAGGGACATAGGACTTGTGGCTTAAATCTGCT
1 GATCTGTAATTTCTAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCT
* * *
50788613 TCCTTACACTTTGAAGATAAGATTCACCGTCTTTGATCA-CTCTGCTACTGCTTAGGGAGACAAG
66 TCCTTACAC-TTGAAGATAAAATTCGCCGTCTTTGATCAGCTCCGCTACTGCTTAGGGAGACAAG
* * * * * *
50788677 ATCTGTAATTTCCAATCTATTCCACTGTTGACTAGGGATATAAGACTTGTGGCTTAAATCTGCTT
130 ATCTGTAATTTCCAACCTATTCCACTGCTGACCAGGAACATAGGACTTGTGGCTTAAATCTGCTT
* *
50788742 CCTTACTCTTGAAGATAAGATTTGCCG-CTTTCGATCTACTCCGCTACTGCTTAGGGAGACAA
195 CCTTACTCTTGAAGATAAGATTCGCCGTCTTT-GATCTGCTCCGCTACTGCTTAGGGAGACAA
* * * *
50788804 GATCTATAATTTCAAACCTATTCCACTGCTGACCAGGGATATAAGACTTGTGGCTTAAATCTTCT
1 GATCTGTAATTTCTAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCT
* * ** * *
50788869 TCCTTACTCTTGAAGATAAGATTTTTCAC-T-TTTGATCTGCTCCGCTACTGCTTAAGGAGACAA
66 TCCTTACACTTGAAGATAA-AATTCGC-CGTCTTTGATCAGCTCCGCTACTGCTTAGGGAGACAA
50788932 GATCTGTAATTTCCCAACCTATTCCACTGCTG
129 GATCTGTAATTT-CCAACCTATTCCACTGCTG
50788964 GTCAAGGAGC
Statistics
Matches: 613, Mismatches: 54, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
255 21 0.03
256 295 0.48
257 297 0.48
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.33
Consensus pattern (256 bp):
GATCTGTAATTTCTAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCT
TCCTTACACTTGAAGATAAAATTCGCCGTCTTTGATCAGCTCCGCTACTGCTTAGGGAGACAAGA
TCTGTAATTTCCAACCTATTCCACTGCTGACCAGGAACATAGGACTTGTGGCTTAAATCTGCTTC
CTTACTCTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCCGCTACTGCTTAGGGAGACAA
Found at i:50790274 original size:8 final size:7
Alignment explanation
Indices: 50790254--50790303 Score: 59
Period size: 7 Copynumber: 7.0 Consensus size: 7
50790244 TTAGCCTCTC
50790254 CATTTTT
1 CATTTTT
50790261 -ACTTTTT
1 CA-TTTTT
50790268 CATTTTTT
1 CA-TTTTT
50790276 CATTTTT
1 CATTTTT
50790283 CA-TTTT
1 CATTTTT
50790289 CATTTTT
1 CATTTTT
50790296 CATCTTTT
1 CAT-TTTT
50790304 TTTTGAATTG
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
6 7 0.18
7 19 0.50
8 12 0.32
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (7 bp):
CATTTTT
Found at i:50790281 original size:15 final size:15
Alignment explanation
Indices: 50790254--50790304 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 15
50790244 TTAGCCTCTC
*
50790254 CATTTTTAC-TTTTT
1 CATTTTTTCATTTTT
50790268 CATTTTTTCATTTTT
1 CATTTTTTCATTTTT
50790283 CA--TTTTCATTTTT
1 CATTTTTTCATTTTT
50790296 CATCTTTTT
1 CAT-TTTTT
50790305 TTTGAATTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 13 0.41
14 8 0.25
15 7 0.22
16 4 0.12
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.71
Consensus pattern (15 bp):
CATTTTTTCATTTTT
Found at i:50791128 original size:14 final size:14
Alignment explanation
Indices: 50791109--50791153 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
50791099 TGGCCTCTCC
50791109 TTTTCTTTTTCCTT
1 TTTTCTTTTTCCTT
*
50791123 TTTTCTTTCTCTCTT
1 TTTTCTTTTTC-CTT
* *
50791138 TTTTCATTTTCATT
1 TTTTCTTTTTCCTT
50791152 TT
1 TT
50791154 CATTTTCATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
14 14 0.54
15 12 0.46
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTCTTTTTCCTT
Found at i:50791176 original size:18 final size:18
Alignment explanation
Indices: 50791138--50791177 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
50791128 TTTCTCTCTT
*
50791138 TTTTCATTTTCATTTTCA
1 TTTTCATTTTCACTTTCA
* *
50791156 TTTTCATTTTGACTTTGA
1 TTTTCATTTTCACTTTCA
50791174 TTTT
1 TTTT
50791178 GATTGTTCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.15, C:0.12, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTCATTTTCACTTTCA
Found at i:50791181 original size:6 final size:6
Alignment explanation
Indices: 50791138--50791165 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
50791128 TTTCTCTCTT
50791138 TTTTCA TTTTCA TTTTCA TTTTCA TTTT
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTT
50791166 GACTTTGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTCA
Found at i:50795890 original size:20 final size:23
Alignment explanation
Indices: 50795844--50795893 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
50795834 ATAAGAGTAA
*
50795844 TAATATATAATAATAATAAAAGGC
1 TAATATATAATAAAAATAAAA-GC
50795868 TAATA-ATAATAAAAAT-AAA-C
1 TAATATATAATAAAAATAAAAGC
50795888 TAATAT
1 TAATAT
50795894 TAAACAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 6 0.25
22 3 0.12
23 10 0.42
24 5 0.21
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (23 bp):
TAATATATAATAAAAATAAAAGC
Found at i:50796700 original size:11 final size:11
Alignment explanation
Indices: 50796671--50796700 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
50796661 AAATCCCCTC
*
50796671 TTTTTCTGTTT
1 TTTTTCTTTTT
50796682 TTTTTCTTTTT
1 TTTTTCTTTTT
50796693 TTTTTCTT
1 TTTTTCTT
50796701 GTTACCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.87
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:50798547 original size:25 final size:24
Alignment explanation
Indices: 50798511--50798557 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
50798501 TATTTCATCA
*
50798511 AAATGATTATA-TTTATTATTTTTC
1 AAATGATGATATTTTA-TATTTTTC
50798535 AAATAGATGATATTTTATATTTT
1 AAAT-GATGATATTTTATATTTT
50798558 ATGAATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 4 0.20
25 12 0.60
26 4 0.20
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.55
Consensus pattern (24 bp):
AAATGATGATATTTTATATTTTTC
Found at i:50806087 original size:26 final size:26
Alignment explanation
Indices: 50806057--50806207 Score: 158
Period size: 26 Copynumber: 5.7 Consensus size: 26
50806047 AAATGTATGA
** *
50806057 AAATGGAAGCCTTTGTGTTGTATTTG
1 AAATGGAAGCCTTTGTGGCGTATCTG
* *
50806083 AAATGGAAGTCTTTGTGGCGTATCTA
1 AAATGGAAGCCTTTGTGGCGTATCTG
* **
50806109 AAATAGAAGCCTTTGTGGCAAATCTG
1 AAATGGAAGCCTTTGTGGCGTATCTG
*
50806135 AAATTGAAGCCTTTGTGGCGTATCTG
1 AAATGGAAGCCTTTGTGGCGTATCTG
* * * *
50806161 AAATTGAACCCTTTGTGGCGGTCTATGG
1 AAATGGAAGCCTTTGTGGC-GTATCT-G
*
50806189 AAATGGATGCCTTTGTGGC
1 AAATGGAAGCCTTTGTGGC
50806208 TAATAATGAC
Statistics
Matches: 104, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 83 0.80
27 4 0.04
28 17 0.16
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (26 bp):
AAATGGAAGCCTTTGTGGCGTATCTG
Found at i:50806694 original size:49 final size:49
Alignment explanation
Indices: 50806631--50806725 Score: 138
Period size: 49 Copynumber: 1.9 Consensus size: 49
50806621 CAGTTTAATA
* *
50806631 ATCTGCAATTTCTGGTAGCTTGACCATAATATTTTGTATCTGGCAGTAT
1 ATCTGCAATTTCTGGTAGCTCGACCATAATATTTTGTATCTAGCAGTAT
* *
50806680 ATCTGC-ATTATCTGGTCGCTCGACCATAATATTTTGTTTCTAGCAG
1 ATCTGCAATT-TCTGGTAGCTCGACCATAATATTTTGTATCTAGCAG
50806726 CTCGACTGCA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
48 3 0.07
49 38 0.93
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (49 bp):
ATCTGCAATTTCTGGTAGCTCGACCATAATATTTTGTATCTAGCAGTAT
Found at i:50821641 original size:24 final size:25
Alignment explanation
Indices: 50821609--50821657 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
50821599 AAATTTTTAA
* *
50821609 ATTTTTTTC-AAGTATGTTTTAATC
1 ATTTCTTTCAAAGTATATTTTAATC
50821633 ATTTCTTTCATAAGTATATTTTAAT
1 ATTTCTTTCA-AAGTATATTTTAAT
50821658 AAATAATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 8 0.38
26 13 0.62
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.57
Consensus pattern (25 bp):
ATTTCTTTCAAAGTATATTTTAATC
Found at i:50823712 original size:24 final size:24
Alignment explanation
Indices: 50823683--50823729 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
50823673 GACAGCCACT
50823683 CTGAATTGGGTTTAATCTTTCTTC
1 CTGAATTGGGTTTAATCTTTCTTC
50823707 CTGAATTGGGTTTAATCTTTCTT
1 CTGAATTGGGTTTAATCTTTCTT
50823730 TTCTTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.17, C:0.15, G:0.17, T:0.51
Consensus pattern (24 bp):
CTGAATTGGGTTTAATCTTTCTTC
Found at i:50835004 original size:19 final size:19
Alignment explanation
Indices: 50834982--50835019 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
50834972 TCAATCATCC
50834982 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
50835001 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
50835020 AATCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:50835831 original size:21 final size:22
Alignment explanation
Indices: 50835789--50835832 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
50835779 CCTAGTTTAT
*
50835789 TTATGTTATAATTGTTGCAAAA
1 TTATGTTATAATTGTTCCAAAA
50835811 TTATGTT-TAATT-TTCCTAAAA
1 TTATGTTATAATTGTTCC-AAAA
50835832 T
1 T
50835833 ATATTTCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 3 0.15
21 10 0.50
22 7 0.35
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.50
Consensus pattern (22 bp):
TTATGTTATAATTGTTCCAAAA
Found at i:50865946 original size:70 final size:70
Alignment explanation
Indices: 50865856--50866004 Score: 253
Period size: 70 Copynumber: 2.1 Consensus size: 70
50865846 TGCCTTCAAT
*
50865856 GTCACGACACAGTCTGAGGGTGTTGTGTCTACCCCTGAAGATGGCTATAGAGAAACATGCTGGTT
1 GTCACGACACAGTCTGAGGGTGTTGCGTCTACCCCTGAAGATGGCTATAGAGAAACATGCTGGTT
50865921 GCTAC
66 GCTAC
* * *
50865926 GTCATGACACAGTCTGAGGGTTTTGCGTCTACCCCTGAAGATGGCTATAGAGAAACATGTTGGTT
1 GTCACGACACAGTCTGAGGGTGTTGCGTCTACCCCTGAAGATGGCTATAGAGAAACATGCTGGTT
*
50865991 GCTAT
66 GCTAC
50865996 GTCACGACA
1 GTCACGACA
50866005 TAGGTCCTGT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
70 73 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (70 bp):
GTCACGACACAGTCTGAGGGTGTTGCGTCTACCCCTGAAGATGGCTATAGAGAAACATGCTGGTT
GCTAC
Found at i:50877487 original size:25 final size:25
Alignment explanation
Indices: 50877459--50877509 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
50877449 ACTTGTTGAC
50877459 TCTTAGCTCATATGAGCTTACCGAT
1 TCTTAGCTCATATGAGCTTACCGAT
*
50877484 TCTTAGCTCGTATGAGCTTACCGAT
1 TCTTAGCTCATATGAGCTTACCGAT
50877509 T
1 T
50877510 TACAACTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.37
Consensus pattern (25 bp):
TCTTAGCTCATATGAGCTTACCGAT
Found at i:50877550 original size:25 final size:25
Alignment explanation
Indices: 50877462--50877554 Score: 91
Period size: 25 Copynumber: 3.7 Consensus size: 25
50877452 TGTTGACTCT
* * *
50877462 TAGCTCATATGAGCTTACCGATTCT
1 TAGCTCGTATGAGCATACCGATTCA
* *
50877487 TAGCTCGTATGAGCTTACCGATTTA
1 TAGCTCGTATGAGCATACCGATTCA
* *
50877512 CAACTTC-TGA-GAGCATACCGATTCA
1 TAGC-TCGT-ATGAGCATACCGATTCA
50877537 TAGCTCGTATGAGCATAC
1 TAGCTCGTATGAGCATAC
50877555 ATGTACAGAA
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
24 3 0.05
25 49 0.89
26 3 0.05
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (25 bp):
TAGCTCGTATGAGCATACCGATTCA
Found at i:50881089 original size:36 final size:36
Alignment explanation
Indices: 50881042--50881112 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
50881032 CACTACTCAA
50881042 ACCCTAAATTCCCAATCCTTCATTCCATATTCTAAT
1 ACCCTAAATTCCCAATCCTTCATTCCATATTCTAAT
50881078 ACCCTAAATTCCCAATCCTTCATTCCATATTCTAA
1 ACCCTAAATTCCCAATCCTTCATTCCATATTCTAA
50881113 GGAGTTACTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.35
Consensus pattern (36 bp):
ACCCTAAATTCCCAATCCTTCATTCCATATTCTAAT
Found at i:50897870 original size:30 final size:30
Alignment explanation
Indices: 50897836--50897961 Score: 105
Period size: 30 Copynumber: 4.2 Consensus size: 30
50897826 AAACTATTCA
*
50897836 TTTTCATAATTTGACT-GTTGTCACCATCCC
1 TTTTCATAATTCGA-TGGTTGTCACCATCCC
* * * ** * *
50897866 TTTTCATAATTTGATTGCT-AAAGCCGTCCT
1 TTTTCATAATTCGATGGTTGTCA-CCATCCC
*
50897896 TTTTCATAATTCGGTGGTTGTCACCATCCC
1 TTTTCATAATTCGATGGTTGTCACCATCCC
* * *
50897926 TTTCCATAA-TCGATGGTCGTCACTATCCC
1 TTTTCATAATTCGATGGTTGTCACCATCCC
50897955 TTTTCAT
1 TTTTCAT
50897962 GATCGATAGC
Statistics
Matches: 75, Mismatches: 18, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
29 25 0.33
30 49 0.65
31 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.13, T:0.42
Consensus pattern (30 bp):
TTTTCATAATTCGATGGTTGTCACCATCCC
Found at i:50897942 original size:29 final size:29
Alignment explanation
Indices: 50897900--50897968 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
50897890 CGTCCTTTTT
* *
50897900 CATAATTCGGTGGTTGTCACCATCCCTTTC
1 CATAA-TCGATGGTCGTCACCATCCCTTTC
* *
50897930 CATAATCGATGGTCGTCACTATCCCTTTT
1 CATAATCGATGGTCGTCACCATCCCTTTC
*
50897959 CATGATCGAT
1 CATAATCGAT
50897969 AGCCGGAGCT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 29 0.85
30 5 0.15
ACGTcount: A:0.20, C:0.28, G:0.16, T:0.36
Consensus pattern (29 bp):
CATAATCGATGGTCGTCACCATCCCTTTC
Found at i:50900102 original size:30 final size:29
Alignment explanation
Indices: 50900056--50900112 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
50900046 ATTATTTTAC
*
50900056 GAAACCTAGGGCCAAAATTGTAATTTTGT
1 GAAACCTAGGGCCAAAAATGTAATTTTGT
*
50900085 GAAACTCTAGGGGCAAAAATGTAATTTT
1 GAAAC-CTAGGGCCAAAAATGTAATTTT
50900113 TCTAAAGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (29 bp):
GAAACCTAGGGCCAAAAATGTAATTTTGT
Found at i:50900466 original size:45 final size:45
Alignment explanation
Indices: 50900393--50900568 Score: 221
Period size: 45 Copynumber: 4.0 Consensus size: 45
50900383 GTGTACTGAG
*
50900393 TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGG
1 TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGA
* * * *
50900438 TACCACTGATTATAAAGGTGGTTTCTATGTGCTGACTCCACCGGA
1 TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGA
* ** * * *
50900483 AATCATTGAAAATAAAGGTGGTTGTTATGTGCTGATTCCATCGAA
1 TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGA
* *
50900528 TATAATTGATTATAAGGGTGG-TGCTATGTGCTGA-TCCACCG
1 TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCG
50900569 TCTAATGGTT
Statistics
Matches: 109, Mismatches: 22, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
43 6 0.06
44 12 0.11
45 91 0.83
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (45 bp):
TATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGA
Found at i:50903924 original size:14 final size:12
Alignment explanation
Indices: 50903898--50903922 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50903888 CACTTATTTC
50903898 TCTTCACTAATA
1 TCTTCACTAATA
50903910 TCTTCACTAATA
1 TCTTCACTAATA
50903922 T
1 T
50903923 ATCAAGAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (12 bp):
TCTTCACTAATA
Found at i:50906532 original size:33 final size:32
Alignment explanation
Indices: 50906502--50906562 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
50906492 TGGAATAACT
*
50906502 ATGGATAGGA-AAGCCTTTGTGGCAAAAATAAA
1 ATGGACAGGACAA-CCTTTGTGGCAAAAATAAA
*
50906534 ATGTACAGGACAACCTTTGTGGCAAAAAT
1 ATGGACAGGACAACCTTTGTGGCAAAAAT
50906563 CTGGACAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
32 24 0.92
33 2 0.08
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.23
Consensus pattern (32 bp):
ATGGACAGGACAACCTTTGTGGCAAAAATAAA
Found at i:50906629 original size:61 final size:61
Alignment explanation
Indices: 50906498--50906646 Score: 154
Period size: 61 Copynumber: 2.4 Consensus size: 61
50906488 TTCTTGGAAT
* * * * *
50906498 AACTATGGATAGGAAAGCCTTTGTGGCAAAAATAAAATGTACAGGACAACCTTTGTGGCAA
1 AACTATGGACAAGAAAGCCTTTGTGGCAAAAATAAAATGTAAAGGACAACATTTGAGGCAA
* * * ** * ** *
50906559 AAATCTGGACAAGAAATCCTTTGTGGCAAGTATCAGTTGTAAAGGATAACATTTGAGGCAA
1 AACTATGGACAAGAAAGCCTTTGTGGCAAAAATAAAATGTAAAGGACAACATTTGAGGCAA
* *
50906620 AACTATGGACAAGAAAGTCGTTGTGGC
1 AACTATGGACAAGAAAGCCTTTGTGGC
50906647 TAGTACTGAA
Statistics
Matches: 69, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
61 69 1.00
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (61 bp):
AACTATGGACAAGAAAGCCTTTGTGGCAAAAATAAAATGTAAAGGACAACATTTGAGGCAA
Found at i:50906661 original size:61 final size:60
Alignment explanation
Indices: 50906533--50906663 Score: 138
Period size: 61 Copynumber: 2.1 Consensus size: 60
50906523 GCAAAAATAA
* * * * *
50906533 AATGTACAGGACAACCTTTGTGGCAAAAATCTGGACAAGAAATCCTTTGTGGCAAGTATC
1 AATGTAAAGGACAACATTTGAGGCAAAAATATGGACAAGAAATCCGTTGTGGCAAGTATC
* * * * *
50906593 AGTTGTAAAGGATAACATTTGAGGCAAAACTATGGACAAGAAAGT-CGTTGTGGCTAGTACTG
1 A-ATGTAAAGGACAACATTTGAGGCAAAAATATGGACAAGAAA-TCCGTTGTGGCAAGTA-TC
50906655 AATGTAAAG
1 AATGTAAAG
50906664 CACCACCTTT
Statistics
Matches: 57, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
60 1 0.02
61 53 0.93
62 3 0.05
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (60 bp):
AATGTAAAGGACAACATTTGAGGCAAAAATATGGACAAGAAATCCGTTGTGGCAAGTATC
Found at i:50910851 original size:53 final size:53
Alignment explanation
Indices: 50910769--50910913 Score: 193
Period size: 53 Copynumber: 2.7 Consensus size: 53
50910759 GGCACTGAAA
* *
50910769 ACCATATCGTGTAAGACCGTAACTAGTGGGTTATGGCATAATATGGACAGAAG
1 ACCATATCGTGTAAGACCGTAACTAGTGGGTTATGGCATAATATGAAAAGAAG
* * * *
50910822 ACCATATCATGTAAGACAGTAACTGGTGGGTTATGG-ATTCATATGAAAAGAAG
1 ACCATATCGTGTAAGACCGTAACTAGTGGGTTATGGCA-TAATATGAAAAGAAG
* * *
50910875 ATCATATCGTGTAAGACCGTAACTACTGAGTTATGGCAT
1 ACCATATCGTGTAAGACCGTAACTAGTGGGTTATGGCAT
50910914 CGTATGGAGA
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
52 1 0.01
53 76 0.97
54 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.27
Consensus pattern (53 bp):
ACCATATCGTGTAAGACCGTAACTAGTGGGTTATGGCATAATATGAAAAGAAG
Found at i:50911191 original size:62 final size:61
Alignment explanation
Indices: 50911125--50911263 Score: 152
Period size: 61 Copynumber: 2.3 Consensus size: 61
50911115 TGAGTACTGG
** * * * *
50911125 ATGTAAAGGACAGTGTGTGTGGAAAAAACTTTGGATAGAAAACATTTTGTGGCAAGTAATAA
1 ATGTAAAGGACAGCCTGTATGG-AAAAACTCTGGAGAGAAAACAATTTGTGGCAAGTAATAA
* * * * * *
50911187 ATGTAAAGGGCAGCCTTTATGGAAAAACTCTGGAGAGGAAAGAATTTGTGGCGAGTACTAA
1 ATGTAAAGGACAGCCTGTATGGAAAAACTCTGGAGAGAAAACAATTTGTGGCAAGTAATAA
*
50911248 ATGTAAAGGAAAGCCT
1 ATGTAAAGGACAGCCT
50911264 TTGTGGCGAG
Statistics
Matches: 63, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
61 46 0.73
62 17 0.27
ACGTcount: A:0.39, C:0.09, G:0.27, T:0.24
Consensus pattern (61 bp):
ATGTAAAGGACAGCCTGTATGGAAAAACTCTGGAGAGAAAACAATTTGTGGCAAGTAATAA
Found at i:50911267 original size:32 final size:32
Alignment explanation
Indices: 50911222--50911286 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
50911212 AACTCTGGAG
*
50911222 AGGAAAGAATTTGTGGCGAGTACTAAATGTAA
1 AGGAAAGAATTTGTGGCGAGTACTAAATCTAA
** *
50911254 AGGAAAGCCTTTGTGGCGAGTACTGAATCTAA
1 AGGAAAGAATTTGTGGCGAGTACTAAATCTAA
50911286 A
1 A
50911287 AGACAACTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.37, C:0.11, G:0.28, T:0.25
Consensus pattern (32 bp):
AGGAAAGAATTTGTGGCGAGTACTAAATCTAA
Found at i:50911425 original size:61 final size:60
Alignment explanation
Indices: 50911256--50911451 Score: 198
Period size: 61 Copynumber: 3.2 Consensus size: 60
50911246 AAATGTAAAG
* * *
50911256 GAAAGCCTTTGTGGCGAGTACTGAATCTAAAAGACAACTTTTATGGAAAAACTCTTGAA-AG
1 GAAAGCCTTTGTGGCGAGTACTGAATCTAAAGGACAACTTTTATGGCAAAACT-TT-AACAA
* * * * * * *
50911317 GAAAGCCTTTGTTGCAATTACTGGATGTAAGGGACAACTTTTATGGCAAAACTTTACACAT
1 GAAAGCCTTTGTGGCGAGTACTGAATCTAAAGGACAACTTTTATGGCAAAACTTTA-ACAA
* * * *
50911378 GAAAGCCTTTGTGGTGAGTACTGAATTTAAAGGACAACCTTTT-TGGCAATACTCTAAACAA
1 GAAAGCCTTTGTGGCGAGTACTGAATCTAAAGGACAA-CTTTTATGGCAAAACT-TTAACAA
*
50911439 GAATGCCTTTGTG
1 GAAAGCCTTTGTG
50911452 ACAAGTCTCT
Statistics
Matches: 111, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
59 1 0.01
60 3 0.03
61 100 0.90
62 7 0.06
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.30
Consensus pattern (60 bp):
GAAAGCCTTTGTGGCGAGTACTGAATCTAAAGGACAACTTTTATGGCAAAACTTTAACAA
Found at i:50917450 original size:25 final size:25
Alignment explanation
Indices: 50917421--50917507 Score: 140
Period size: 25 Copynumber: 3.5 Consensus size: 25
50917411 TCCACCACTC
*
50917421 GTGAGAGCATAC-AGATTTGTAGCTT
1 GTGAGAGCATACTA-ATTTATAGCTT
50917446 GTGAGAGCATACTAATTTATAGCTT
1 GTGAGAGCATACTAATTTATAGCTT
*
50917471 GTGAGAGCATACTAATTTATAGCTC
1 GTGAGAGCATACTAATTTATAGCTT
50917496 GTGAGAGCATAC
1 GTGAGAGCATAC
50917508 CGATCTAATG
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
25 58 0.98
26 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (25 bp):
GTGAGAGCATACTAATTTATAGCTT
Found at i:50926655 original size:138 final size:138
Alignment explanation
Indices: 50926407--50926826 Score: 642
Period size: 138 Copynumber: 3.0 Consensus size: 138
50926397 TAGAAAAATG
* *
50926407 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCATTTATATTTTGATTGAAACTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGATTGAAATTAATTAA
* * * * *
50926472 TATAATTTTTTATATTAATAAATTCGATAAAATTTATGCAATTAATATTTTGTATGAATCAACTT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
50926537 CATATATT
131 CATATATT
* * *
50926545 AATTATATTCTTTCCAAAAGAATATTAATTTCTATTTCTTTTATACTTTGATTGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGATTGAAATTAATTAA
* * * *
50926610 TATAATTGTTTATATAAATAAATTCGGTAAAATATAAACAATTAATATTTTTTATGAATAAAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
*
50926675 TATATATT
131 CATATATT
* ***
50926683 AATTATATTCTTTCCAAAATAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGATTGAAATTAATTAA
* *
50926748 TATAATTGTTTATATTAATAAATTTGGAAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
*
50926813 CTTATATT
131 CATATATT
50926821 AATTAT
1 AATTAT
50926827 GTATATGTTC
Statistics
Matches: 252, Mismatches: 30, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
138 252 1.00
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.47
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGATTGAAATTAATTAA
TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:50928990 original size:51 final size:50
Alignment explanation
Indices: 50928883--50928993 Score: 134
Period size: 51 Copynumber: 2.2 Consensus size: 50
50928873 ACGAAGAAAG
* * * *
50928883 TATCTGGCAGTATGACTGCAAATTTCTGGTGGCTTGACCACAATATTCTG
1 TATCTGGCAGTATGACTACAAATTTCTAGTGGCTCGACCACAATATTCTA
* *
50928933 TATCTGGCAGTAT-ATCTACAAATTATCTAGTGGCTCGACCATAGTATTCTA
1 TATCTGGCAGTATGA-CTACAAATT-TCTAGTGGCTCGACCACAATATTCTA
*
50928984 TTTCTGGCAG
1 TATCTGGCAG
50928994 CTCGAATGCA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.02
50 21 0.40
51 30 0.58
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (50 bp):
TATCTGGCAGTATGACTACAAATTTCTAGTGGCTCGACCACAATATTCTA
Found at i:50941715 original size:26 final size:26
Alignment explanation
Indices: 50941678--50941805 Score: 123
Period size: 26 Copynumber: 4.8 Consensus size: 26
50941668 CGTCCTTTGA
* * *
50941678 CAGAGATTGCCACCATGGCTTCCATT
1 CAGAGATAGCCACAAAGGCTTCCATT
*
50941704 CAGAGATAGCCACAAAGGC-TCACTTTT
1 CAGAGATAGCCACAAAGGCTTC-C-ATT
* * *
50941731 AACAGAGATCGCCACAAAGGTTTCCTTT
1 --CAGAGATAGCCACAAAGGCTTCCATT
*
50941759 CAGAGATAGCCACAAAGGCTTTCATT
1 CAGAGATAGCCACAAAGGCTTCCATT
* *
50941785 TAGAGATAGCCACAAAAGCTT
1 CAGAGATAGCCACAAAGGCTT
50941806 ACTTTTAATA
Statistics
Matches: 85, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
25 2 0.02
26 58 0.68
27 2 0.02
28 3 0.04
29 18 0.21
30 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (26 bp):
CAGAGATAGCCACAAAGGCTTCCATT
Found at i:50941779 original size:81 final size:81
Alignment explanation
Indices: 50941678--50941831 Score: 209
Period size: 81 Copynumber: 1.9 Consensus size: 81
50941668 CGTCCTTTGA
* * * * *
50941678 CAGAGATTGCCACCATGGCTTCCATTCAGAGATAGCCACAAAGGCTCACTTTTAACAGAGATCGC
1 CAGAGATAGCCACAAAGGCTTCCATTCAGAGATAGCCACAAAAGCTCACTTTTAACAGAGATCAC
50941743 CACAAAGGTTTCCTTT
66 CACAAAGGTTTCCTTT
* * * * * *
50941759 CAGAGATAGCCACAAAGGCTTTCATTTAGAGATAGCCACAAAAGCTTACTTTTAATAGCGGTCAC
1 CAGAGATAGCCACAAAGGCTTCCATTCAGAGATAGCCACAAAAGCTCACTTTTAACAGAGATCAC
50941824 CACAAAGG
66 CACAAAGG
50941832 CTCACTTATA
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 62 1.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (81 bp):
CAGAGATAGCCACAAAGGCTTCCATTCAGAGATAGCCACAAAAGCTCACTTTTAACAGAGATCAC
CACAAAGGTTTCCTTT
Done.