Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55868233
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 983842 characters in sequence are not A, C, G, or T
File 186 of 187
Found at i:55630702 original size:85 final size:84
Alignment explanation
Indices: 55630542--55631457 Score: 901
Period size: 85 Copynumber: 10.7 Consensus size: 84
55630532 TCTTCTTTAG
* * ** *
55630542 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAA
1 CCCGCACAT-CCAAGCACCTAGGTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTA
* * *
55630606 GTTGCCAATGGTGTCCGAGGCT
63 GGTGCCGATGGTGCCCGAGGCT
* * * *
55630628 CCCGCACATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGG
1 CCCGCACATCCAAG-CACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
* *
55630693 TGCCGATGGTGGCCGAGGCC
65 TGCCGATGGTGCCCGAGGCT
** ** * * *
55630713 CCCGCACGA-CCAAGGGCCTATTTTACCGATGGTGCCCGAGGCTCCCGCAGGACCAAGGGCTTAG
1 CCCGCAC-ATCCAAGCACCTA-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* *
55630777 TTTGCCGATGGTGCCCGAGCCT
64 -GTGCCGATGGTGCCCGAGGCT
* ** * ** *
55630799 CTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCACCAA
1 CCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTA
* *
55630862 GGTGTCGATGGTGCTCGAGGCT
63 GGTGCCGATGGTGCCCGAGGCT
** ** *
55630884 CCCGCACGA-CCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* *
55630948 TTTGCCGATGGTGTCCGAGGCT
64 -GTGCCGATGGTGCCCGAGGCT
* * * * * **
55630970 CCCGCACATCCCAGCACCTAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGGCCTATTT
1 CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
55631035 TCTCGATGGTGCCCGAGGCT
66 GC-CGATGGTGCCCGAGGCT
** * * * *
55631055 CCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCTAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
*
55631119 GTTGCCGATGGTGCCCGAGGTT
64 G-TGCCGATGGTGCCCGAGGCT
* * *
55631141 CTCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-
** *
55631206 TGCCGACAGTGTCCGAGGCT
65 TGCCGATGGTGCCCGAGGCT
* **
55631226 CCCGCACAT-CATAGCACCGAGGTGCTTATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
1 CCCGCACATCCA-AGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
55631290 TTGCCGATGGTGCCCGAGGCT
65 -TGCCGATGGTGCCCGAGGCT
* * * ** * * * *
55631311 CCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTT
1 CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-G
* *
55631376 TGCCGATGGTGTCCGGGGCT
65 TGCCGATGGTGCCCGAGGCT
* * *
55631396 CCTGCACATCCTAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
1 CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
55631458 TGCTACCGGA
Statistics
Matches: 690, Mismatches: 122, Indels: 37
0.81 0.14 0.04
Matches are distributed among these distances:
84 8 0.01
85 486 0.70
86 194 0.28
87 2 0.00
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (84 bp):
CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
GCCGATGGTGCCCGAGGCT
Found at i:55630760 original size:43 final size:43
Alignment explanation
Indices: 55630565--55631457 Score: 859
Period size: 43 Copynumber: 20.9 Consensus size: 43
55630555 GGCACCAAGG
** *
55630565 TGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-AAGT
1 TGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * ** *
55630608 TGCCAATGGTGTCCGAGGCTCCCGCAC-ATCCTAGCCACCGAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GGCCTAGGT
* *
55630651 TGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * **
55630693 TGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATTT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
55630736 TACCGATGGTGCCCGAGGCTCCCGCAGGACCAAGGGCTTAGTT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
55630779 TGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** *
55630822 TGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* *
55630864 TGTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * *
55630907 TGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * **
55630950 TGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCACCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * * *
55630992 GGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGGCCTA-TT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
55631034 TTCTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTT
1 TGC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
55631078 TGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** *
55631121 TGCCGATGGTGCCCGAGGTTCTCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
*
55631163 TGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * * ** *
55631206 TGCCGACAGTGTCCGAGGCTCCCGCAC-ATCATAGCACCGAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGGCCTAGGT
**
55631248 TGCTTATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** *
55631291 TGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCACCGAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* ** * * * *
55631333 TGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * ** *
55631376 TGCCGATGGTGTCCGGGGCTCCTGCAC-ATCCTAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
55631418 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
55631458 TGCTACCGGA
Statistics
Matches: 692, Mismatches: 135, Indels: 47
0.79 0.15 0.05
Matches are distributed among these distances:
42 264 0.38
43 421 0.61
44 7 0.01
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (43 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:55630761 original size:128 final size:125
Alignment explanation
Indices: 55630562--55631457 Score: 812
Period size: 128 Copynumber: 7.0 Consensus size: 125
55630552 CCAGGCACCA
* * * *
55630562 AGGTGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACC-AAGTTGCCAATGGTGTCCGAGG
1 AGGTGCCGAT-GGTGCCCGAGGCTCCCGCACA-CCAAGCACCTAGGGTGCCGATGGTGCCCGAGG
* ** * * *
55630626 CTCCCGCACATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCG
64 CTCCCGCACA-CCAAG-GGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * ** *** *
55630690 AGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATTTTACCGATGGTGCCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCACCTAGGGTGCCGATGGTGCCCGAGGC
* * * * *
55630755 TCCCGCAGGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCT
65 TCCCGCA-CACCAAGGGCCTAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * * *
55630818 AGGTTGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACC-AAGGTGTCGATGGTGCTCGAGG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGCACCTAGGGTGCCGATGGTGCCCGAGG
** *
55630882 CTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCT
64 CTCCCGCAC-ACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * * * *
55630946 AGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGG-GCCGATGGCGGCCGAGG
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGCACCTAGGGTGCCGATGGTGCCCGAGG
* ** * *
55631010 CACCCGCACGACCAAGGGCCTATTTTCTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTT
64 CTCCCGCAC-ACCAAGGGCCTAGGTGC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * * ** *
55631074 AGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGG
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCACCTAGGGTGCCGATGGTGCCCGAGG
* * ** * *
55631139 TTCTCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCT
64 CTCCCGCACA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
** * * * **
55631202 AGGTTGCCGACAGTGTCCGAGGCTCCCGCACATCATAGCACCGA-GGTGCTTATGGTGCCCGAGG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACACCA-AGCACCTAGGGTGCCGATGGTGCCCGAGG
* ** *
55631266 CTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCACCG
64 CTCCCGCAC-ACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT
* ** ** ** * ** * *
55631330 AGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGCACCTAGGGTGCCGATGGTGCCCGAGGC
* * ** *
55631395 TCCTGCACATCCTAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
65 TCCCGCACA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
55631457 A
1 A
55631458 TGCTACCGGA
Statistics
Matches: 618, Mismatches: 127, Indels: 47
0.78 0.16 0.06
Matches are distributed among these distances:
127 127 0.21
128 424 0.69
129 67 0.11
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (125 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACACCAAGCACCTAGGGTGCCGATGGTGCCCGAGGCT
CCCGCACACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
Found at i:55631094 original size:299 final size:299
Alignment explanation
Indices: 55630542--55631444 Score: 1112
Period size: 299 Copynumber: 3.0 Consensus size: 299
55630532 TCTTCTTTAG
* * **
55630542 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-A
1 CCCGCACAT-CCAAGCACCAAGGTGCCGAT-GGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTA
* * ** *
55630605 AGTTGCCAATGGTGTCCGAGGCTCCCGCACATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGC
63 GGTTGCCGACAGTGTCCGAGGCTCCCGCACATCCAAGCCACCGAGGTGCCGATGCTGCCCGAGGC
** * * *
55630670 TCCCGCACGACCAAGGGCCGAGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATT
128 TCCCGCACGACCAAGCACCGAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGGCCTATT
*
55630735 TTACCGATGGTGCCCGAGGCTCCCGCAGGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTC
193 TTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTC
55630800 TCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTT
258 TCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTT
*
55630842 CCCGCACATCCAAGCACCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * * * *
55630907 TGCCGACAGTGTCCGAGGCTCCCGCACGA-CCAAG-GGCCTAGTTTGCCGATGGTGTCCGAGGCT
66 TGCCGACAGTGTCCGAGGCTCCCGCAC-ATCCAAGCCACCGAG-GTGCCGATGCTGCCCGAGGCT
* *
55630970 CCCGCAC-ATCCCAGCACCTAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGGCCTATT
129 CCCGCACGA-CCAAGCACCGAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGGCCTATT
55631034 TT-CTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCT
193 TTAC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCT
55631098 CTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTT
257 CTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTT
*
55631141 CTCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** *
55631206 TGCCGACAGTGTCCGAGGCTCCCGCACAT-CATAG-CACCGAGGTGCTTATGGTGCCCGAGGCTC
66 TGCCGACAGTGTCCGAGGCTCCCGCACATCCA-AGCCACCGAGGTGCCGATGCTGCCCGAGGCTC
** * * * * * * ** * *
55631269 CCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCACCGA-G
130 CCGCACGACCAAGCACCGAGG-GGCCGATGGCGGCCGAGGCACCCGCACGA-CCAAGGGCCTATT
* * * ** * * * * *
55631332 GTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGCTC
193 TTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTC
* ** * *
55631397 -CTGCAC-ATCCTAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
258 TC-GCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTT
55631438 CCCGCAC
1 CCCGCAC
55631445 GACCAAGGGC
Statistics
Matches: 529, Mismatches: 60, Indels: 31
0.85 0.10 0.05
Matches are distributed among these distances:
297 27 0.05
298 137 0.26
299 355 0.67
300 10 0.02
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (299 bp):
CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
TGCCGACAGTGTCCGAGGCTCCCGCACATCCAAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCC
CGCACGACCAAGCACCGAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGGCCTATTTTA
CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCG
CACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTT
Found at i:55631490 original size:11 final size:11
Alignment explanation
Indices: 55631474--55631538 Score: 58
Period size: 11 Copynumber: 5.5 Consensus size: 11
55631464 CGGAACGGTT
55631474 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55631485 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55631498 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55631509 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55631522 CGCCGGAGCAC
1 CGCCGGAGCAC
55631533 CGCCGG
1 CGCCGG
55631539 GAACCTAACC
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
11 18 0.43
12 12 0.29
13 12 0.29
ACGTcount: A:0.15, C:0.40, G:0.42, T:0.03
Consensus pattern (11 bp):
CGCCGGAGCAC
Found at i:55631495 original size:24 final size:24
Alignment explanation
Indices: 55631463--55631540 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
55631453 GCCTATGCTA
* *
55631463 CCGGAACGGTTCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55631487 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55631511 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55631535 CCGGGA
1 CCGGGA
55631541 ACCTAACCGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.17, C:0.37, G:0.41, T:0.05
Consensus pattern (24 bp):
CCGGGACGGATCGCCGGAGCACCG
Found at i:55631503 original size:13 final size:13
Alignment explanation
Indices: 55631485--55631527 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
55631475 GCCGGAGCAC
55631485 CGCCGGGACGGAT
1 CGCCGGGACGGAT
* *
55631498 CGCC-GGA-GCAC
1 CGCCGGGACGGAT
55631509 CGCCGGGACGGAT
1 CGCCGGGACGGAT
55631522 CGCCGG
1 CGCCGG
55631528 AGCACCGCCG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 6 0.25
12 6 0.25
13 12 0.50
ACGTcount: A:0.14, C:0.37, G:0.44, T:0.05
Consensus pattern (13 bp):
CGCCGGGACGGAT
Found at i:55631799 original size:42 final size:42
Alignment explanation
Indices: 55631750--55632085 Score: 328
Period size: 42 Copynumber: 7.9 Consensus size: 42
55631740 ACTTTAGCTT
* * *
55631750 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
*
55631792 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
** *
55631834 TGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
** *
55631877 CAGTG-TCCGAGGCTCCCGCACAT-CATAGCACCGAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* * ** *
55631919 TGGT-CTCCGAGGCTTCC-CACAACCAAG-GGCATAGTTTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCA-AG-GTGCCGA
* *
55631961 TGGTG-TCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* *
55632003 TGGTGCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
55632046 TGGTG-TCTGAGGCTCCCACACATCCGAGCCACCAAGGTGC
1 TGGTGCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGTGC
55632086 TGGAGGCTCT
Statistics
Matches: 242, Mismatches: 36, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
40 1 0.00
41 8 0.03
42 153 0.63
43 71 0.29
44 9 0.04
ACGTcount: A:0.21, C:0.34, G:0.28, T:0.18
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:55639801 original size:22 final size:22
Alignment explanation
Indices: 55639773--55639925 Score: 225
Period size: 22 Copynumber: 7.0 Consensus size: 22
55639763 TTTATTGTTC
*
55639773 AAACATGAGAGCTTAGTACGTG
1 AAACATGAGAGCTTAGTACGTT
55639795 AAACATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
**
55639817 AGCCATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
** * * *
55639839 AGCCATGAGGGTTTAGTTCGTT
1 AAACATGAGAGCTTAGTACGTT
55639861 AAACATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
*
55639883 AAACATGAGAGCTTAGTACGTG
1 AAACATGAGAGCTTAGTACGTT
55639905 AAACATGAGAGCTTAGTACGT
1 AAACATGAGAGCTTAGTACGT
55639926 ACTATCAACA
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 119 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (22 bp):
AAACATGAGAGCTTAGTACGTT
Found at i:55643694 original size:43 final size:42
Alignment explanation
Indices: 55643647--55644540 Score: 859
Period size: 43 Copynumber: 21.0 Consensus size: 42
55643637 CCAGGCACCA
* * ** *
55643647 AGGTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCTAGCCACCG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GGCCT
* * * ** *
55643690 AGGTGCCAATGCTGCCCGAGGCTCCCGCAC-ATCCGAGCCACCA
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GGCCT
* * *
55643733 AGGTACCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * *
55643775 AGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* *
55643817 AGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
** * * *
55643859 ATTTTACCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCT
1 A-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* ** *
55643902 AGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCACCA
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT
* *
55643945 AGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
** *
55643987 AGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCT
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * * **
55644030 AGTTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCACCT
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT
* * * *
55644073 AGGGGCCGATGGCGGCCGAGGCTCCCGCACGACCAAGGGCTT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * *
55644115 AGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCT
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* *
55644158 AGGTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCT
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* ** *
55644201 AGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCACCA
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT
** * * ** *
55644244 AGGTGCCGACAGTGTCCGAGGCTCCCGCAC-ATCATAGCACCG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGGCCT
55644286 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
**
55644328 AGGTGCTTATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* ** *
55644370 AGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCACCG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT
* ** * * *
55644413 AGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * * * * ** *
55644455 AGTTTGCCGATGGTGTCCGGGGCTCCTGCAC-ATCCTAGCACCA
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT
55644498 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
55644540 A
1 A
55644541 TGCTACCGGA
Statistics
Matches: 709, Mismatches: 122, Indels: 41
0.81 0.14 0.05
Matches are distributed among these distances:
41 2 0.00
42 319 0.45
43 387 0.55
44 1 0.00
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (42 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
Found at i:55643965 original size:128 final size:127
Alignment explanation
Indices: 55643650--55644540 Score: 847
Period size: 128 Copynumber: 7.0 Consensus size: 127
55643640 GGCACCAAGG
* * ** * * *
55643650 TGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCTAGCCACCGAGGTGCCAATGCTGCCCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GGCCTAGGTGCCGATGGTG-CCGAGGCTC
* ** * * * *
55643714 CCGCAC-ATCCGAGCCACCAAGG-TACCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCGAG
63 CCGCACGA-CCAAG-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
55643777 G-
126 GT
* * * *
55643778 TGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCGAGGTGCCGATGGTGGCCGAGGCCCCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGT-GCCGAGGCTCCC
** * * *
55643843 GCACGACCAAGGGCCTATTTTACCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGT
65 GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** * *
55643906 TGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCACCAAGGTGTCGATGGTGCTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGC-CGAGGCTCC
** * *
55643970 CGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
64 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** * *
55644034 TGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCACCTAGGGGCCGATGGCGGCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGG-TGCCGAGGCTCC
* * * *
55644098 CGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGT
64 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
55644162 TGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTG-CCGAGGCTCC
** * ** * * ** *
55644227 CGCAC-ATCCAAGCACCAAGG-TGCCGACAGTGTCCGAGGCTCCCGCAC-ATCATAGCACCGAGG
64 CGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGGCCTAGG
55644289 -
127 T
**
55644289 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCTTATGGTGCCCGAGGCTCCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTG-CCGAGGCTCCC
* ** *
55644354 GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCACCGAGG-
65 GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* ** * * * * *
55644416 TGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-GTGCCGATGGTG-CCGAGGCTCC
* * ** *
55644481 TGCAC-ATCCTAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
64 CGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
55644541 TGCTACCGGA
Statistics
Matches: 638, Mismatches: 106, Indels: 39
0.81 0.14 0.05
Matches are distributed among these distances:
126 37 0.06
127 222 0.35
128 345 0.54
129 34 0.05
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (127 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCGAGGCTCCCG
CACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:55644432 original size:85 final size:85
Alignment explanation
Indices: 55643627--55644540 Score: 898
Period size: 85 Copynumber: 10.7 Consensus size: 85
55643617 TCTTCTTTAG
* * * * ** *
55643627 CCCGCACATCCCAGGCACCAAGGTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCTAGCCACCGA
1 CCCGCACAT-CCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GGCCTA
* *
55643691 GG-TGCCAATGCTGCCCGAGGCT
63 GGTTGCCGATGGTGCCCGAGGCT
* * * * *
55643713 CCCGCACATCCGAGCCACCAAGGTACCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCGAGG
1 CCCGCACATCCAAG-CACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
* *
55643778 -TGCCGATGGTGGCCGAGGCC
65 TTGCCGATGGTGCCCGAGGCT
** * * * **
55643798 CCCGCACGA-CCAAGGGCCGAGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATT
1 CCCGCAC-ATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
* *
55643862 TTACCGATGGTGCCCGAGCCT
65 TTGCCGATGGTGCCCGAGGCT
* ** * ** *
55643883 CTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCACCAA
1 CCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTA
* *
55643946 GG-TGTCGATGGTGCTCGAGGCT
63 GGTTGCCGATGGTGCCCGAGGCT
** ** *
55643968 CCCGCACGA-CCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* *
55644032 TTTGCCGATGGTGTCCGAGGCT
64 GTTGCCGATGGTGCCCGAGGCT
* * * * * *
55644054 CCCGCACATCCCAGCACCTAGGGGCCGATGGCGGCCGAGGCTCCCGCACGACCAAGGGCTTAGTT
1 CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
55644119 TGCCGATGGTGCCCGAGCCT
66 TGCCGATGGTGCCCGAGGCT
* ** * *
55644139 CTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
*
55644203 GTTGCCGATGGTGCCCGAGGTT
64 GTTGCCGATGGTGCCCGAGGCT
* ** * * ** *
55644225 CCCGCACATCCAAGCACCAAGGTGCCGACAGTGTCCGAGGCTCCCGCAC-ATCATAGCACCGAGG
1 CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGGCCTAGG
55644289 -TGCCGATGGTGCCCGAGGCT
65 TTGCCGATGGTGCCCGAGGCT
** **
55644309 CCCGCACGA-CCAAGGGCCTAGGTGCTTATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
1 CCCGCAC-ATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
55644373 TTGCCGATGGTGCCCGAGGCT
65 TTGCCGATGGTGCCCGAGGCT
* * * ** * * * *
55644394 CCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTT
1 CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
55644459 TGCCGATGGTGTCCGGGGCT
66 TGCCGATGGTGCCCGAGGCT
* * *
55644479 CCTGCACATCCTAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
1 CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
55644541 TGCTACCGGA
Statistics
Matches: 686, Mismatches: 125, Indels: 35
0.81 0.15 0.04
Matches are distributed among these distances:
84 111 0.16
85 389 0.57
86 185 0.27
87 1 0.00
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (85 bp):
CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
TGCCGATGGTGCCCGAGGCT
Found at i:55644578 original size:24 final size:24
Alignment explanation
Indices: 55644546--55644606 Score: 113
Period size: 24 Copynumber: 2.5 Consensus size: 24
55644536 GCCTATGCTA
*
55644546 CCGGAACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55644570 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55644594 CCGGGACGGATCG
1 CCGGGACGGATCG
55644607 GCGGTGGGGG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.18, C:0.36, G:0.41, T:0.05
Consensus pattern (24 bp):
CCGGGACGGATCGCCGGAGCACCG
Found at i:55644856 original size:42 final size:42
Alignment explanation
Indices: 55644807--55645142 Score: 319
Period size: 42 Copynumber: 7.9 Consensus size: 42
55644797 ACTTTAGCTT
* * *
55644807 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
*
55644849 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
** *
55644891 TGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
** * *
55644934 CAGTG-TCCGAGGCTCCCGTACAT-CATAGCACCGAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* * * **
55644976 TGGT-CTCCGAGGCTTCC-CACAACCAAGGGCA-TAATTTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAA--GCACCAAGGTGCCGA
* *
55645018 TGGTG-TCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* *
55645060 TGGTGCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
55645103 TGGTG-TCTGAGGCTCCCACACATCCGAGCCACCAAGGTGC
1 TGGTGCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGTGC
55645143 TGGAGGCTCT
Statistics
Matches: 240, Mismatches: 38, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
41 7 0.03
42 156 0.65
43 70 0.29
44 7 0.03
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:55653122 original size:43 final size:42
Alignment explanation
Indices: 55653069--55653965 Score: 775
Period size: 43 Copynumber: 21.0 Consensus size: 42
55653059 ATCCCAGGCA
* **
55653069 CCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCAAGTTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * **
55653112 CCAAGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCTAGCCA
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GG
* * *
55653155 CCGAGGTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
55653197 CCGAGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** *
55653239 CCTATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * *
55653282 CTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGG
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
55653325 CCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * *
55653368 CCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** *
55653410 CCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGG
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * **
55653453 CCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCA
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* ** * * *
55653496 CCTAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
55653538 CCTATTTTCTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * *
55653581 CTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGG
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
55653624 CCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
55653667 CCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * * **
55653709 CCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCAC-ATCATAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGG
* * *
55653752 CCGAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
55653794 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * ** * *
55653837 CCGAGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * * * * **
55653879 CTTAGTTTGCCGATGGTGTCCGGGGCTCCTGCAC-ATCCTAGCA
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
*
55653922 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
55653964 CC
1 CC
55653966 TATGCTACCG
Statistics
Matches: 681, Mismatches: 148, Indels: 51
0.77 0.17 0.06
Matches are distributed among these distances:
42 262 0.38
43 413 0.61
44 6 0.01
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (42 bp):
CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:55653207 original size:85 final size:84
Alignment explanation
Indices: 55653052--55653967 Score: 937
Period size: 85 Copynumber: 10.7 Consensus size: 84
55653042 TCTTCTTTAG
* * ** *
55653052 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAA
1 CCCGCACAT-CCAAGCACCTAGGTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTA
* *
55653116 GTTGCCGATGGTGTCCGAGGCT
63 GGTGCCGATGGTGCCCGAGGCT
* * * *
55653138 CCCGCACATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGG
1 CCCGCACATCCAAG-CACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
* *
55653203 TGCCGATGGTGGCCGAGGCC
65 TGCCGATGGTGCCCGAGGCT
** ** * *
55653223 CCCGCACGA-CCAAGGGCCTATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAG
1 CCCGCAC-ATCCAAGCACCTA-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* *
55653287 TTTGCCGATGGTGCCCGAGCCT
64 -GTGCCGATGGTGCCCGAGGCT
* ** * ** *
55653309 CTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCACCAA
1 CCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTA
* *
55653372 GGTGTCGATGGTGCTCGAGGCT
63 GGTGCCGATGGTGCCCGAGGCT
** ** *
55653394 CCCGCACGA-CCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* *
55653458 TTTGCCGATGGTGTCCGAGGCT
64 -GTGCCGATGGTGCCCGAGGCT
* * * * * **
55653480 CCCGCACATCCCAGCACCTAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGGCCTATTT
1 CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
55653545 TCTCGATGGTGCCCGAGGCT
66 GC-CGATGGTGCCCGAGGCT
** * * * *
55653565 CCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCTAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
*
55653629 GTTGCCGATGGTGCCCGAGGTT
64 G-TGCCGATGGTGCCCGAGGCT
* *
55653651 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-
** *
55653716 TGCCGACAGTGTCCGAGGCT
65 TGCCGATGGTGCCCGAGGCT
* *
55653736 CCCGCACAT-CATAGCACCGAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
1 CCCGCACATCCA-AGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
55653800 TTGCCGATGGTGCCCGAGGCT
65 -TGCCGATGGTGCCCGAGGCT
* * * ** * * * *
55653821 CCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTT
1 CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-G
* *
55653886 TGCCGATGGTGTCCGGGGCT
65 TGCCGATGGTGCCCGAGGCT
* * *
55653906 CCTGCACATCCTAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
1 CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
55653968 TGCTACCGGA
Statistics
Matches: 697, Mismatches: 115, Indels: 37
0.82 0.14 0.04
Matches are distributed among these distances:
84 8 0.01
85 491 0.70
86 196 0.28
87 2 0.00
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (84 bp):
CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
GCCGATGGTGCCCGAGGCT
Found at i:55653271 original size:128 final size:126
Alignment explanation
Indices: 55653072--55653967 Score: 890
Period size: 128 Copynumber: 7.0 Consensus size: 126
55653062 CCAGGCACCA
* *
55653072 AGGTGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACC-AAGTTGCCGATGGTGTCCGAGG
1 AGGTGCCGAT-GGTGCCCGAGGCTCCCGCACA-CCAAGCACCTAGGTTGCCGATGGTGCCCGAGG
* ** * * *
55653136 CTCCCGCAC-ATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCCG
64 CTCCCGCACGA-CCAAG-GGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * ** ** *
55653200 AGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATTTTACCGATGGTGCCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCACCTAGGTTGCCGATGGTGCCCGAGGC
* * * *
55653265 TCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCT
65 TCCCGCACGACCAAGGGCCTAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * * *
55653328 AGGTTGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCAAGG-TGTCGATGGTGCTCGAGG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGCACCTAGGTTGCCGATGGTGCCCGAGG
** *
55653392 CTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCT
64 CTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * * * * *
55653456 AGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGG-GGCCGATGGCGGCCGAGG
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGCACCTAGGTTGCCGATGGTGCCCGAGG
* ** * *
55653520 CACCCGCACGACCAAGGGCCTATTTTCTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTT
64 CTCCCGCACGACCAAGGGCCTAGGTGC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * * **
55653584 AGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGG
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCACCTAGGTTGCCGATGGTGCCCGAGG
* ** * *
55653649 TTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCT
64 CTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
** * * * *
55653712 AGGTTGCCGACAGTGTCCGAGGCTCCCGCACATCATAGCACCGAGG-TGCTGATGGTGCCCGAGG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACACCA-AGCACCTAGGTTGCCGATGGTGCCCGAGG
* ** *
55653776 CTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCACCG
64 CTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT
* ** ** ** * * * *
55653840 AGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGCACCTAGGTTGCCGATGGTGCCCGAGGC
* * ** *
55653905 TCCTGCAC-ATCCTAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
65 TCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
55653967 A
1 A
55653968 TGCTACCGGA
Statistics
Matches: 628, Mismatches: 119, Indels: 43
0.79 0.15 0.05
Matches are distributed among these distances:
127 129 0.21
128 433 0.69
129 66 0.11
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (126 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACACCAAGCACCTAGGTTGCCGATGGTGCCCGAGGCT
CCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
Found at i:55654000 original size:11 final size:11
Alignment explanation
Indices: 55653984--55654048 Score: 58
Period size: 11 Copynumber: 5.5 Consensus size: 11
55653974 CGGAACGGTT
55653984 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55653995 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55654008 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55654019 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55654032 CGCCGGAGCAC
1 CGCCGGAGCAC
55654043 CGCCGG
1 CGCCGG
55654049 GAACCTAACC
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
11 18 0.43
12 12 0.29
13 12 0.29
ACGTcount: A:0.15, C:0.40, G:0.42, T:0.03
Consensus pattern (11 bp):
CGCCGGAGCAC
Found at i:55654005 original size:24 final size:24
Alignment explanation
Indices: 55653973--55654050 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
55653963 GCCTATGCTA
* *
55653973 CCGGAACGGTTCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55653997 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55654021 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55654045 CCGGGA
1 CCGGGA
55654051 ACCTAACCGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.17, C:0.37, G:0.41, T:0.05
Consensus pattern (24 bp):
CCGGGACGGATCGCCGGAGCACCG
Found at i:55654013 original size:13 final size:13
Alignment explanation
Indices: 55653995--55654037 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
55653985 GCCGGAGCAC
55653995 CGCCGGGACGGAT
1 CGCCGGGACGGAT
* *
55654008 CGCC-GGA-GCAC
1 CGCCGGGACGGAT
55654019 CGCCGGGACGGAT
1 CGCCGGGACGGAT
55654032 CGCCGG
1 CGCCGG
55654038 AGCACCGCCG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 6 0.25
12 6 0.25
13 12 0.50
ACGTcount: A:0.14, C:0.37, G:0.44, T:0.05
Consensus pattern (13 bp):
CGCCGGGACGGAT
Found at i:55654309 original size:42 final size:42
Alignment explanation
Indices: 55654260--55654595 Score: 319
Period size: 42 Copynumber: 7.9 Consensus size: 42
55654250 ACTTTAGCTT
* * *
55654260 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
*
55654302 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
** *
55654344 TGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
** * *
55654387 CAGTG-TCCGAGGCTCCCGTACAT-CATAGCACCGAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* * * **
55654429 TGGT-CTCCGAGGCTTCC-CACAACCAAGGGCA-TAATTTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAA--GCACCAAGGTGCCGA
* *
55654471 TGGTG-TCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* *
55654513 TGGTGCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
55654556 TGGTG-TCTGAGGCTCCCACACATCCGAGCCACCAAGGTGC
1 TGGTGCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGTGC
55654596 TGGAGGCTCT
Statistics
Matches: 240, Mismatches: 38, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
41 7 0.03
42 156 0.65
43 70 0.29
44 7 0.03
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:55660847 original size:43 final size:41
Alignment explanation
Indices: 55660739--55661634 Score: 777
Period size: 43 Copynumber: 21.0 Consensus size: 41
55660729 CCAGGCACCA
** *
55660739 AGGTGCCGATGGGGTGCCCGAGGCTCCCGCACATCCAAGCACCA
1 AGGTGCCGAT--GGTGCCCGAGGCTCCCGCACA-CCAAGGGCCT
* * * ** *
55660783 AGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCTAGCCACCG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAG-GGCCT
* * ** *
55660826 AGGTGCCGATGCTGCCCGAGGCTCCCGCACATCCGAGCCACCA
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAG-GGCCT
* *
55660869 AGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCT
*
55660911 AGGTGCCGATGGTGGCCGAGGC-CCCGCACGACCAAGGGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCT
** * *
55660952 ATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTT
1 A-GGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCT
* * ** *
55660995 AGTTTGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCA
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGGCCT
* *
55661038 AGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCT
** *
55661080 AGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCT
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCT
* * * **
55661123 AGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCT
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGGCCT
* * * *
55661166 AGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCT
* * *
55661208 AGTTTCTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTT
1 AGGTGC-CGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCT
* * *
55661251 AGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCT
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCT
* ** *
55661294 AGGTTGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCA
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGGCCT
*
55661337 AGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCT
** * * ** *
55661379 AGGTTGCCGACAGTGTCCGAGGCTCCCGCACATCATAGCACCG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACACCA-AGGGCCT
*
55661422 AGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCT
* ** *
55661464 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCGAAGCACCG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGGCCT
* ** ** *
55661507 AGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGGGCCT
* * * * * ** *
55661549 AGTTTGCCGATGGTGTCCGGGGCTCCTGCACATCCTAGCACCA
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGGGCCT
55661592 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGGGCCT
55661634 A
1 A
55661635 TGCTACCGGA
Statistics
Matches: 699, Mismatches: 128, Indels: 52
0.80 0.15 0.06
Matches are distributed among these distances:
41 19 0.03
42 266 0.38
43 401 0.57
44 13 0.02
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (41 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACACCAAGGGCCT
Found at i:55660916 original size:85 final size:83
Alignment explanation
Indices: 55660721--55661634 Score: 873
Period size: 85 Copynumber: 10.7 Consensus size: 83
55660711 CTTCTTTAGT
* * ** *
55660721 CCGCACATCCAGGCACCAAGGTGCCGATGGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAG
1 CCGCACA-CCAAGCACCGAGGTGCCGAT--GGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAG
* *
55660785 TTGCCGATGGTGTCCGAGGCTC
62 GTGCCGATGGTGCCCGAGGCTC
* * * ** *
55660807 CCGCACATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCGAGCCACCAAG
1 CCGCACA-CCAAG-CACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GGCCTAG
*
55660871 GTGCCGATGGTGGCCGAGGCTC
62 GTGCCGATGGTGCCCGAGGCTC
** * **
55660893 CCGCACGACCAAGGGCCGAGGTGCCGATGGTGGCCGAGGC-CCCGCACGACCAAGGGCCTATTTT
1 CCGCAC-ACCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA-GGT
*
55660957 ACCGATGGTGCCCGAGGCTC
64 GCCGATGGTGCCCGAGGCTC
** ** * * ** *
55660977 CCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCACCAAGG
1 CCGCAC-ACCAAGCACCGAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGG
* *
55661041 TGTCGATGGTGCTCGAGGCTC
63 TGCCGATGGTGCCCGAGGCTC
** * ** * *
55661062 CCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
1 CCGCAC-ACCAAGCACCGAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-G
*
55661127 TGCCGATGGTGTCCGAGGCTC
63 TGCCGATGGTGCCCGAGGCTC
* * * * * * * *
55661148 CCGCACATCCCAGCACCTAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGGCCTAGTTT
1 CCGCACA-CCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTG
55661213 CTCGATGGTGCCCGAGGCTC
65 C-CGATGGTGCCCGAGGCTC
** ** * * *
55661233 CCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGT
1 CCGCAC-ACCAAGCACCGAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-
*
55661298 TGCCGATGGTGCCCGAGGTTC
63 TGCCGATGGTGCCCGAGGCTC
* *
55661319 CCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
1 CCGCACA-CCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-T
** *
55661384 GCCGACAGTGTCCGAGGCTC
64 GCCGATGGTGCCCGAGGCTC
* *
55661404 CCGCACATCATAGCACCGAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
1 CCGCACACCA-AGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-T
55661469 GCCGATGGTGCCCGAGGCTC
64 GCCGATGGTGCCCGAGGCTC
* * ** * * * *
55661489 CCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTTT
1 CCGCACA-CCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-GT
* *
55661554 GCCGATGGTGTCCGGGGCTC
64 GCCGATGGTGCCCGAGGCTC
* * *
55661574 CTGCACATCCTAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
1 CCGCACA-CCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
55661635 TGCTACCGGA
Statistics
Matches: 696, Mismatches: 112, Indels: 41
0.82 0.13 0.05
Matches are distributed among these distances:
83 3 0.00
84 53 0.08
85 457 0.66
86 166 0.24
87 17 0.02
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (83 bp):
CCGCACACCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGC
CGATGGTGCCCGAGGCTC
Found at i:55661126 original size:128 final size:127
Alignment explanation
Indices: 55660742--55661634 Score: 853
Period size: 128 Copynumber: 7.0 Consensus size: 127
55660732 GGCACCAAGG
*
55660742 TGCCGATGGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGCTC
1 TGCCGAT--GGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTG-CCGAGGCTC
* ** * * * ** *
55660807 CCGCAC-ATCCTAGCCACCGAGG-TGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCGAGCCACCA
63 CCGCACGA-CCAAG-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GGCCT
*
55660869 AG-G
124 AGTT
* ** *
55660872 TGCCGATGGTGGCCGAGGCTCCCGCACGA-CCAAGGGCCGAGGTGCCGATGGTGGCCGAGGC-CC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGT-GCCGAGGCTCC
** * *
55660935 CGCACGACCAAGGGCCTATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTT
64 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
* *
55660999 TGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCTCGAGGCTCCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGC-CGAGGCTCCC
** *
55661064 GCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
65 GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
* * * * * *
55661127 TGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGGGCCGATGGCGGCCGAGGCACCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGG-TGCCGAGGCTCCC
* *
55661192 GCACGACCAAGGGCCTA-GTTTCTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTT
65 GCACGACCAAGGGCCTAGGTTGC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
* * ** * *
55661255 TGCCGATGGTGCCCGAGCCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTTC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTG-CCGAGGCTC
** * * *
55661319 CCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGG
63 CCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGT
55661382 T
127 T
** * * *
55661383 TGCCGACAGTGTCCGAGGCTCCCGCACAT-CATAGCACCGAGGTGCTGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGATGGTG-CCGAGGCTCC
* ** * *
55661447 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCACCGAG-G
64 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGTT
* ** *** ** ** * *
55661510 TGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAG-GTGCCGATGGTG-CCGAGGCTCC
* * ** *
55661575 TGCAC-ATCCTAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
64 CGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
55661635 TGCTACCGGA
Statistics
Matches: 631, Mismatches: 107, Indels: 53
0.80 0.14 0.07
Matches are distributed among these distances:
126 9 0.01
127 193 0.31
128 385 0.61
129 36 0.06
130 8 0.01
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (127 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCGAGGCTCCCG
CACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
Found at i:55661667 original size:11 final size:11
Alignment explanation
Indices: 55661651--55661715 Score: 58
Period size: 11 Copynumber: 5.5 Consensus size: 11
55661641 CGGAACGGTT
55661651 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55661662 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55661675 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55661686 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55661699 CGCCGGAGCAC
1 CGCCGGAGCAC
55661710 CGCCGG
1 CGCCGG
55661716 GAACCTAACC
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
11 18 0.43
12 12 0.29
13 12 0.29
ACGTcount: A:0.15, C:0.40, G:0.42, T:0.03
Consensus pattern (11 bp):
CGCCGGAGCAC
Found at i:55661672 original size:24 final size:24
Alignment explanation
Indices: 55661640--55661717 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
55661630 GCCTATGCTA
* *
55661640 CCGGAACGGTTCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55661664 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55661688 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55661712 CCGGGA
1 CCGGGA
55661718 ACCTAACCGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.17, C:0.37, G:0.41, T:0.05
Consensus pattern (24 bp):
CCGGGACGGATCGCCGGAGCACCG
Found at i:55661680 original size:13 final size:13
Alignment explanation
Indices: 55661662--55661704 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
55661652 GCCGGAGCAC
55661662 CGCCGGGACGGAT
1 CGCCGGGACGGAT
* *
55661675 CGCC-GGA-GCAC
1 CGCCGGGACGGAT
55661686 CGCCGGGACGGAT
1 CGCCGGGACGGAT
55661699 CGCCGG
1 CGCCGG
55661705 AGCACCGCCG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 6 0.25
12 6 0.25
13 12 0.50
ACGTcount: A:0.14, C:0.37, G:0.44, T:0.05
Consensus pattern (13 bp):
CGCCGGGACGGAT
Found at i:55661975 original size:42 final size:42
Alignment explanation
Indices: 55661926--55662261 Score: 319
Period size: 42 Copynumber: 7.9 Consensus size: 42
55661916 ACTTTAGCTT
* * *
55661926 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
*
55661968 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
** *
55662010 TGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
** * *
55662053 CAGTG-TCCGAGGCTCCCGTACAT-CATAGCACCGAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* * * **
55662095 TGGT-CTCCGAGGCTTCC-CACAACCAAGGGCA-TAATTTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAA--GCACCAAGGTGCCGA
* *
55662137 TGGTG-TCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* *
55662179 TGGTGCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
55662222 TGGTG-TCTGAGGCTCCCACACATCCGAGCCACCAAGGTGC
1 TGGTGCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGTGC
55662262 TGGAGGCTCT
Statistics
Matches: 240, Mismatches: 38, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
41 7 0.03
42 156 0.65
43 70 0.29
44 7 0.03
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:55665505 original size:43 final size:42
Alignment explanation
Indices: 55665452--55666389 Score: 850
Period size: 43 Copynumber: 22.0 Consensus size: 42
55665442 ATCCCAGGCA
**
55665452 CCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCAAGGTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * **
55665495 CCAAGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCTAGCCA
1 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GG
* *
55665538 CCGAGGTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
55665580 CCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
55665622 CCGAGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGG
1 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*** * * *
55665664 CCTATTTTACCGATGGTGCCCGAGCCTCTCGCACGACCAAGGG
1 CC-AAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
55665707 CCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCA
1 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * **
55665750 CCAAGGTGTCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCA
1 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
55665792 CCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
1 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** *
55665834 CCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * **
55665877 CCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCA
1 CCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * *
55665920 CCTAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGG
1 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** *
55665962 CCTATTTTCTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGGTGC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * * *
55666005 CTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGG
1 CCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
55666048 CCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCA
1 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
*
55666091 CCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
1 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * * **
55666133 CCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCAC-ATCATAGCA
1 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGG
* *
55666176 CCGAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
55666218 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCA
1 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * ** * *
55666261 CCGAGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGG
1 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * * * * * **
55666303 CTTAGTTTGCCGATGGTGTCCGGGGCTCCTGCAC-ATCCTAGCA
1 CCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
55666346 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
55666388 CC
1 CC
55666390 TATGCTACCG
Statistics
Matches: 738, Mismatches: 133, Indels: 49
0.80 0.14 0.05
Matches are distributed among these distances:
42 348 0.47
43 386 0.52
44 4 0.01
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (42 bp):
CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:55665590 original size:85 final size:84
Alignment explanation
Indices: 55665455--55666391 Score: 997
Period size: 85 Copynumber: 11.0 Consensus size: 84
55665445 CCAGGCACCA
* * *
55665455 AGGTGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGC
1 AGGTGCCGAT-GGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGC
* ** *
55665520 TCCCGCAC-ATCCTAGCCACCG
65 TCCCGCACGA-CCAAG-GGCCT
* ** *
55665541 AGGTGCCGATGCTGCCCGAGGCTCCCGCACGA-CCAAGGGCCGAGGTGCCGATGGTGCCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGC
*
55665605 TCCCGCACGACCAAGGGCCG
65 TCCCGCACGACCAAGGGCCT
* * ** ** * *
55665625 AGGTGCCGATGGTGGCCGAGGCCCCCGCACGA-CCAAGGGCCTATTTTACCGATGGTGCCCGAGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTA-GGTGCCGATGGTGCCCGAGG
*
55665689 CTCTCGCACGACCAAGGGCCT
64 CTCCCGCACGACCAAGGGCCT
* * * *
55665710 AGGTTGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCCCGAGGT
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGC
** *
55665775 TCCCGCAC-ATCCAAGCACCA
65 TCCCGCACGA-CCAAGGGCCT
* * ** ** *
55665795 AGGTGTCGATGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGACAGTGTCCGAGG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCGAGG
55665859 CTCCCGCACGACCAAGGGCCT
64 CTCCCGCACGACCAAGGGCCT
* * * * * *
55665880 AGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGGGCCGATGGCGGCCGAGGC
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGC
*
55665945 ACCCGCACGACCAAGGGCCT
65 TCCCGCACGACCAAGGGCCT
** * ** * *
55665965 ATTTTCTCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAG
1 AGGTGC-CGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAG-GTGCCGATGGTGCCCGAG
* *
55666029 CCTCTCGCACGACCAAGGGCCT
63 GCTCCCGCACGACCAAGGGCCT
* * *
55666051 AGGTTGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGC
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGC
55666116 TCCCGCACGACCAAGGGCCT
65 TCCCGCACGACCAAGGGCCT
** * * *
55666136 AGGTTGCCGACAGTGTCCGAGGCTCCCGCACAT-CATAGCACCGAGGTGCTGATGGTGCCCGAGG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCA-AGCACCTAGGTGCCGATGGTGCCCGAGG
55666200 CTCCCGCACGACCAAGGGCCT
64 CTCCCGCACGACCAAGGGCCT
* * *
55666221 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGC
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGC
** * * *
55666286 TCCTTCATGGCCAAGGGCTT
65 TCCCGCACGACCAAGGGCCT
* * * * * *
55666306 AGTTTGCCGATGGTGTCCGGGGCTCCTGCACATCCTAGCACCAAGGTGCCGATGGTGCCCGAGGC
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGC
55666371 TCCCGCACGACCAAGGGCCT
65 TCCCGCACGACCAAGGGCCT
55666391 A
1 A
55666392 TGCTACCGGA
Statistics
Matches: 713, Mismatches: 119, Indels: 39
0.82 0.14 0.04
Matches are distributed among these distances:
84 82 0.12
85 483 0.68
86 146 0.20
87 2 0.00
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (84 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCT
CCCGCACGACCAAGGGCCT
Found at i:55666424 original size:11 final size:11
Alignment explanation
Indices: 55666408--55666472 Score: 58
Period size: 11 Copynumber: 5.5 Consensus size: 11
55666398 CGGAACGGTT
55666408 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55666419 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55666432 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55666443 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55666456 CGCCGGAGCAC
1 CGCCGGAGCAC
55666467 CGCCGG
1 CGCCGG
55666473 GAACCTAACC
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
11 18 0.43
12 12 0.29
13 12 0.29
ACGTcount: A:0.15, C:0.40, G:0.42, T:0.03
Consensus pattern (11 bp):
CGCCGGAGCAC
Found at i:55666429 original size:24 final size:24
Alignment explanation
Indices: 55666397--55666474 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
55666387 GCCTATGCTA
* *
55666397 CCGGAACGGTTCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55666421 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55666445 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55666469 CCGGGA
1 CCGGGA
55666475 ACCTAACCGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.17, C:0.37, G:0.41, T:0.05
Consensus pattern (24 bp):
CCGGGACGGATCGCCGGAGCACCG
Found at i:55666437 original size:13 final size:13
Alignment explanation
Indices: 55666419--55666461 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
55666409 GCCGGAGCAC
55666419 CGCCGGGACGGAT
1 CGCCGGGACGGAT
* *
55666432 CGCC-GGA-GCAC
1 CGCCGGGACGGAT
55666443 CGCCGGGACGGAT
1 CGCCGGGACGGAT
55666456 CGCCGG
1 CGCCGG
55666462 AGCACCGCCG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 6 0.25
12 6 0.25
13 12 0.50
ACGTcount: A:0.14, C:0.37, G:0.44, T:0.05
Consensus pattern (13 bp):
CGCCGGGACGGAT
Found at i:55666731 original size:42 final size:42
Alignment explanation
Indices: 55666677--55666982 Score: 286
Period size: 42 Copynumber: 7.2 Consensus size: 42
55666667 ACAGGGGGCC
55666677 CCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAGCA
1 CCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAGCA
* **
55666719 CCAAGGTACCGATGGTGCTCGAGGCTCCCGCACGA-CCAAGGG
1 CCAAGGTGCCGATGGTGCTCGAGGCTCCCGCAC-ATCCAAGCA
* ** *
55666761 CCTAGGTTGCCGACAGTG-TCCGAGGCTCCCGTACAT-CATAGCA
1 CCAAGG-TGCCGATGGTGCT-CGAGGCTCCCGCACATCCA-AGCA
* * *
55666804 CCGAGGTGCCGATGGT-CTCCGAGGCTTCC-CACAACCAAGGGCA
1 CCAAGGTGCCGATGGTGCT-CGAGGCTCCCGCACATCCAA--GCA
* ** * *
55666847 -TAATTTGCCGATGGTG-TCCGATGCTCCCGCACATCCATGCA
1 CCAAGGTGCCGATGGTGCT-CGAGGCTCCCGCACATCCAAGCA
55666888 CCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAGCA
1 CCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAGCA
* * * *
55666930 TCAAGGTTACCGATGGTG-TCTGAGGCTCCCACACATCCGAGCCA
1 CCAAGG-TGCCGATGGTGCTC-GAGGCTCCCGCACATCCAAG-CA
55666974 CCAAGGTGC
1 CCAAGGTGC
55666983 TGGAGGCTCT
Statistics
Matches: 213, Mismatches: 35, Indels: 31
0.76 0.13 0.11
Matches are distributed among these distances:
41 7 0.03
42 129 0.61
43 70 0.33
44 7 0.03
ACGTcount: A:0.21, C:0.34, G:0.28, T:0.17
Consensus pattern (42 bp):
CCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAGCA
Found at i:55666965 original size:85 final size:84
Alignment explanation
Indices: 55666678--55666982 Score: 320
Period size: 85 Copynumber: 3.6 Consensus size: 84
55666668 CAGGGGGCCC
* *
55666678 CAAGG-TGCCGATGGTG-CTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGATGGTGCTCGA
1 CAAGGTTGCCGATGGTGTC-CGAGGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGA
***
55666741 GGCTCCCGCACGACCAAGGGC
65 GGCTCCCGCAC-ACCAAGCAT
* ** * *
55666762 CTAGGTTGCCGACAGTGTCCGAGGCTCCCGTACAT-CATAGCACCGAGGTGCCGATGGT-CTCCG
1 CAAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAT-GCACCAAGGTGCCGATGGTGCT-CG
*
55666825 AGGCTTCC-CACAACCAAGGGCAT
64 AGGCTCCCGCAC-ACCAA--GCAT
* *
55666848 -AA-TTTGCCGATGGTGTCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAG
1 CAAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAG
55666911 GCTCCCGCACATCCAAGCAT
66 GCTCCCGCACA-CCAAGCAT
* * *
55666931 CAAGGTTACCGATGGTGTCTGAGGCTCCCACACATCCGA-GCCACCAAGGTGC
1 CAAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCC-ATG-CACCAAGGTGC
55666983 TGGAGGCTCT
Statistics
Matches: 182, Mismatches: 25, Indels: 26
0.78 0.11 0.11
Matches are distributed among these distances:
83 4 0.02
84 72 0.40
85 92 0.51
86 14 0.08
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.17
Consensus pattern (84 bp):
CAAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAG
GCTCCCGCACACCAAGCAT
Found at i:55673473 original size:23 final size:23
Alignment explanation
Indices: 55673447--55673492 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
55673437 CGAAAGTTGA
55673447 TAGGGCAGAAATTTGAATGATGC
1 TAGGGCAGAAATTTGAATGATGC
55673470 TAGGGCAGAAATTTGAATGATGC
1 TAGGGCAGAAATTTGAATGATGC
55673493 GTCGCCGGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.09, G:0.30, T:0.26
Consensus pattern (23 bp):
TAGGGCAGAAATTTGAATGATGC
Found at i:55674964 original size:43 final size:42
Alignment explanation
Indices: 55674911--55675676 Score: 652
Period size: 43 Copynumber: 18.0 Consensus size: 42
55674901 ATCCCAGGCA
* **
55674911 CCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCAAGTTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * **
55674954 CCAAGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCTAGCCA
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GG
* * *
55674997 CCGAGGTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
55675039 CCGAGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** *
55675081 CCTATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* **
55675124 CTTATTTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 C-CAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
55675167 -CTAGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCCA--G
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* ** * * *
55675206 CACTAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGG
1 C-CAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
55675249 CCTATTTTCTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * *
55675292 CTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGG
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
55675335 CCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
55675378 CCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * * **
55675420 CCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCAC-ATCATAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGG
* * *
55675463 CCGAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
55675505 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * ** * *
55675548 CCGAGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * * * * **
55675590 CTTAGTTTGCCGATGGTGTCCGGGGCTCCTGCAC-ATCCTAGCA
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
*
55675633 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
55675675 CC
1 CC
55675677 TATGCTACCG
Statistics
Matches: 581, Mismatches: 118, Indels: 49
0.78 0.16 0.07
Matches are distributed among these distances:
39 1 0.00
40 1 0.00
41 60 0.10
42 199 0.34
43 315 0.54
44 5 0.01
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (42 bp):
CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:55675049 original size:85 final size:84
Alignment explanation
Indices: 55674914--55675678 Score: 815
Period size: 85 Copynumber: 9.0 Consensus size: 84
55674904 CCAGGCACCA
* * *
55674914 AGGTGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGC
1 AGGTGCCGAT-GGTGCCCGAGGCTCCCGCACATCCAAGCACCGAGGTGCCGATGGTGCCCGAGGC
* ** *
55674979 TCCCGCAC-ATCCTAGCCACCG
65 TCCCGCACGA-CCAAG-GGCCT
* ** *
55675000 AGGTGCCGATGCTGCCCGAGGCTCCCGCACGA-CCAAGGGCCGAGGTGCCGATGGTGGCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCGAGGTGCCGATGGTGCCCGAGGC
*
55675064 CCCCGCACGACCAAGGGCCT
65 TCCCGCACGACCAAGGGCCT
** * ** ** **
55675084 ATTTTACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCTTATTTTGCCGATGGTGCCCGAG
1 A-GGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCGA-GGTGCCGATGGTGCCCGAG
55675148 GCTCCCGCACGACCAAGGG-CT
63 GCTCCCGCACGACCAAGGGCCT
* * * * * * * *
55675169 AGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCA-CTAGGGGCCGATGGCGGCCGAGGCA
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCGAGGTGCCGATGGTGCCCGAGGCT
55675233 CCCGCACGACCAAGGGCCT
66 CCCGCACGACCAAGGGCCT
** * ** ** *
55675252 ATTTTCTCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAG
1 AGGTGC-CGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCGAG-GTGCCGATGGTGCCCGAG
* *
55675316 CCTCTCGCACGACCAAGGGCCT
63 GCTCCCGCACGACCAAGGGCCT
* * *
55675338 AGGTTGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGC
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCGAGGTGCCGATGGTGCCCGAGGC
55675403 TCCCGCACGACCAAGGGCCT
65 TCCCGCACGACCAAGGGCCT
** * *
55675423 AGGTTGCCGACAGTGTCCGAGGCTCCCGCACAT-CATAGCACCGAGGTGCTGATGGTGCCCGAGG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCA-AGCACCGAGGTGCCGATGGTGCCCGAGG
55675487 CTCCCGCACGACCAAGGGCCT
64 CTCCCGCACGACCAAGGGCCT
* *
55675508 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGC
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCGAGGTGCCGATGGTGCCCGAGGC
** * * *
55675573 TCCTTCATGGCCAAGGGCTT
65 TCCCGCACGACCAAGGGCCT
* * * * * *
55675593 AGTTTGCCGATGGTGTCCGGGGCTCCTGCACATCCTAGCACCAAGGTGCCGATGGTGCCCGAGGC
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCGAGGTGCCGATGGTGCCCGAGGC
55675658 TCCCGCACGACCAAGGGCCT
65 TCCCGCACGACCAAGGGCCT
55675678 A
1 A
55675679 TGCTACCGGA
Statistics
Matches: 573, Mismatches: 91, Indels: 31
0.82 0.13 0.04
Matches are distributed among these distances:
82 32 0.06
83 9 0.02
84 62 0.11
85 356 0.62
86 112 0.20
87 2 0.00
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (84 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCGAGGTGCCGATGGTGCCCGAGGCT
CCCGCACGACCAAGGGCCT
Found at i:55675711 original size:11 final size:11
Alignment explanation
Indices: 55675695--55675759 Score: 58
Period size: 11 Copynumber: 5.5 Consensus size: 11
55675685 CGGAACGGTT
55675695 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55675706 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55675719 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55675730 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55675743 CGCCGGAGCAC
1 CGCCGGAGCAC
55675754 CGCCGG
1 CGCCGG
55675760 GAACCTAACC
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
11 18 0.43
12 12 0.29
13 12 0.29
ACGTcount: A:0.15, C:0.40, G:0.42, T:0.03
Consensus pattern (11 bp):
CGCCGGAGCAC
Found at i:55675716 original size:24 final size:24
Alignment explanation
Indices: 55675684--55675761 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
55675674 GCCTATGCTA
* *
55675684 CCGGAACGGTTCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55675708 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55675732 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55675756 CCGGGA
1 CCGGGA
55675762 ACCTAACCGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.17, C:0.37, G:0.41, T:0.05
Consensus pattern (24 bp):
CCGGGACGGATCGCCGGAGCACCG
Found at i:55675724 original size:13 final size:13
Alignment explanation
Indices: 55675706--55675748 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
55675696 GCCGGAGCAC
55675706 CGCCGGGACGGAT
1 CGCCGGGACGGAT
* *
55675719 CGCC-GGA-GCAC
1 CGCCGGGACGGAT
55675730 CGCCGGGACGGAT
1 CGCCGGGACGGAT
55675743 CGCCGG
1 CGCCGG
55675749 AGCACCGCCG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 6 0.25
12 6 0.25
13 12 0.50
ACGTcount: A:0.14, C:0.37, G:0.44, T:0.05
Consensus pattern (13 bp):
CGCCGGGACGGAT
Found at i:55676020 original size:42 final size:42
Alignment explanation
Indices: 55675971--55676306 Score: 319
Period size: 42 Copynumber: 7.9 Consensus size: 42
55675961 ACTTTAGCTT
* * *
55675971 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
*
55676013 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
** *
55676055 TGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
** * *
55676098 CAGTG-TCCGAGGCTCCCGTACAT-CATAGCACCGAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* * * **
55676140 TGGT-CTCCGAGGCTTCC-CACAACCAAGGGCA-TAATTTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAA--GCACCAAGGTGCCGA
* *
55676182 TGGTG-TCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* *
55676224 TGGTGCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
55676267 TGGTG-TCTGAGGCTCCCACACATCCGAGCCACCAAGGTGC
1 TGGTGCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGTGC
55676307 TGGAGGCTCT
Statistics
Matches: 240, Mismatches: 38, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
41 7 0.03
42 156 0.65
43 70 0.29
44 7 0.03
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:55684288 original size:43 final size:42
Alignment explanation
Indices: 55684235--55685174 Score: 816
Period size: 43 Copynumber: 22.0 Consensus size: 42
55684225 ATCCCAGGCA
* **
55684235 CCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCAAGTTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * **
55684278 CCAAGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCTAGCCA
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GG
* * *
55684321 CCGAGGTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
55684363 CCGAGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** *
55684405 CCTATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * *
55684448 CTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGG
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
55684491 CCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * *
55684534 CCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** *
55684576 CCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGG
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** *
55684619 CCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGG
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * **
55684662 CCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCA
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* ** * * *
55684705 CCTAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
55684747 CCTATTTTCTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * *
55684790 CTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGG
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
55684833 CCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
55684876 CCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * * **
55684918 CCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCAC-ATCATAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGG
* * *
55684961 CCGAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
55685003 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * ** * *
55685046 CCGAGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * * * * **
55685088 CTTAGTTTGCCGATGGTGTCCGGGGCTCCTGCAC-ATCCTAGCA
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
*
55685131 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
55685173 CC
1 CC
55685175 TATGCTACCG
Statistics
Matches: 724, Mismatches: 148, Indels: 51
0.78 0.16 0.06
Matches are distributed among these distances:
42 262 0.36
43 456 0.63
44 6 0.01
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (42 bp):
CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:55684373 original size:85 final size:85
Alignment explanation
Indices: 55684241--55685176 Score: 1069
Period size: 85 Copynumber: 11.0 Consensus size: 85
55684231 GGCACCAAGG
* * *
55684241 TGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGCTCC
1 TGCCGAT-GGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCC
* ** *
55684306 CGCAC-ATCCTAGCCACCGAGG-
65 CGCACGA-CCAAG-GGCCTAGGT
* ** * * *
55684327 TGCCGATGCTGCCCGAGGCTCCCGCACGA-CCAAGGGCCGAGGTGCCGATGGTGGCCGAGGCCCC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCC
**
55684391 CGCACGACCAAGGGCCTATTT
65 CGCACGACCAAGGGCCTAGGT
* ** * * *
55684412 TACCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAG-GTGCCGATGGTGCCCGAGGCTC
*
55684476 TCGCACGACCAAGGGCCTAGGT
64 CCGCACGACCAAGGGCCTAGGT
* * * *
55684498 TGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCTCGAGGCTCCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCC
55684563 GCACGACCAAGGGCCTAGGT
66 GCACGACCAAGGGCCTAGGT
** * ** ** *
55684583 TGCCGACAGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTC
*
55684647 CCGCACGACCAAGGGCCTAGTT
64 CCGCACGACCAAGGGCCTAGGT
* * * * * *
55684669 TGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGGGCCGATGGCGGCCGAGGCACCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCC
*
55684734 GCACGACCAAGGGCCTA-TT
66 GCACGACCAAGGGCCTAGGT
* ** * * *
55684753 TTCTCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCT
1 TGC-CGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAG-GTGCCGATGGTGCCCGAGGCT
*
55684817 CTCGCACGACCAAGGGCCTAGGT
63 CCCGCACGACCAAGGGCCTAGGT
* * *
55684840 TGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCC
55684905 GCACGACCAAGGGCCTAGGT
66 GCACGACCAAGGGCCTAGGT
** * * *
55684925 TGCCGACAGTGTCCGAGGCTCCCGCACAT-CATAGCACCGAGGTGCTGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACATCCA-AGCACCTAGGTGCCGATGGTGCCCGAGGCTCC
55684989 CGCACGACCAAGGGCCTAGGT
65 CGCACGACCAAGGGCCTAGGT
* * * *
55685010 TGCCGATGGTGCCCGAGGCTCCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGCTCCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCC
* * * * *
55685075 TCATGGCCAAGGGCTTAGTT
66 GCACGACCAAGGGCCTAGGT
* * * * *
55685095 TGCCGATGGTGTCCGGGGCTCCTGCACATCCTAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCC
55685160 GCACGACCAAGGGCCTA
66 GCACGACCAAGGGCCTA
55685177 TGCTACCGGA
Statistics
Matches: 721, Mismatches: 114, Indels: 31
0.83 0.13 0.04
Matches are distributed among these distances:
84 9 0.01
85 490 0.68
86 219 0.30
87 3 0.00
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (85 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCC
GCACGACCAAGGGCCTAGGT
Found at i:55684437 original size:128 final size:127
Alignment explanation
Indices: 55684238--55685176 Score: 919
Period size: 128 Copynumber: 7.3 Consensus size: 127
55684228 CCAGGCACCA
** * *
55684238 AGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAG-TTGCCGATGGTGTCCGAG
1 AGGTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAG
* * *
55684301 GCTCCCGCAC-ATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGGCC
64 GCTCCCGCACGA-CCAAG-CACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
*
55684365 G
127 T
* * * *
55684366 AGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATTTTACCGATGGTGCCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGC
** * * * *
55684431 TCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCT
66 TCCCGCACGACCAAGCACCTAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* ** * * * *
55684494 AGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCACCAAG-GTGTCGATGGTGCTCGAG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAG
** ** *
55684557 GCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCT
64 GCTCCCGCACGACCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
** * *
55684622 AGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGG
* * * * *
55684687 CTCCCGCAC-ATCCCAGCACCTAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGGCCT
65 CTCCCGCACGA-CCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
** * * *
55684750 ATTTTCTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGC
1 AGGTGC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGG
* ** * ** *
55684815 CTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCACCA
65 CTCCCGCACGACCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT
* * ** *
55684879 AGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGC
* * *
55684944 TCCCGCAC-ATCATAGCACCGAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
66 TCCCGCACGACCA-AGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* ** * * *
55685006 AGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCACCGAG-GTGCCGATGGCGCCCGAG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAG
** * * ** * * * * * * **
55685069 GCTCCTTCATGGCCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGCTCCTGCAC-ATCCTAGCACC
64 GCTCCCGCACGACCAAGCACCTAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCC
*
55685133 A
127 T
55685134 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
55685177 TGCTACCGGA
Statistics
Matches: 660, Mismatches: 129, Indels: 45
0.79 0.15 0.05
Matches are distributed among these distances:
127 130 0.20
128 429 0.65
129 101 0.15
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (127 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGC
TCCCGCACGACCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
Found at i:55684504 original size:171 final size:169
Alignment explanation
Indices: 55684241--55685176 Score: 1092
Period size: 171 Copynumber: 5.5 Consensus size: 169
55684231 GGCACCAAGG
* *
55684241 TGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGCTCC
1 TGCCGAT-GGTGCCCGAGGCTCCCGCACA-CCAAGCACCTAGTTGCCGATGGTGCCCGAGGCTCC
* ** * * ** *
55684306 CGCAC-ATCCTAGCCACCGAGG-TGCCGATGCTGCCCGAGGCTCCCGCACGA-CCAAGGGCCGAG
64 CGCACGA-CCAAG-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAG
* *
55684368 GTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATTT
126 GTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
* ** * * *
55684412 TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCACCTAG-TTGCCGATGGTGCCCGAGGCTCC
*
55684477 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCAAGGTG
64 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTG
* *
55684542 TCGATGGT-GCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
129 CCGATGGTGGC-CGAGGCTCCCGCACGACCAAGGGCCTAGTT
** * ** ** *
55684583 TGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCACCTA-GTTGCCGATGGTGCCCGAGGCTCC
* * * * *
55684648 CGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGGG
64 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTG
* *
55684713 CCGATGGCGGCCGAGGCACCCGCACGACCAAGGGCCTA-TT
129 CCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
* ** * *
55684753 TTCTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTC
1 TGC-CGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCACCTAG-TTGCCGATGGTGCCCGAGGCTC
* *
55684818 TCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCAAGGT
63 CCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGT
*
55684883 GCCGATGGT-GCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
128 GCCGATGGTGGC-CGAGGCTCCCGCACGACCAAGGGCCTAGTT
** * * * * *
55684925 TGCCGACAGTGTCCGAGGCTCCCGCACATCATAGCACCGAGGTGCTGATGGTGCCCGAGGCTCCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACACCA-AGCACCTAGTTGCCGATGGTGCCCGAGGCTCCC
* *
55684990 GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCGAAGCACCGAGGTGC
65 GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGC
* * ** * * *
55685055 CGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTT
130 CGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
* * * * * *
55685095 TGCCGATGGTGTCCGGGGCTCCTGCACATCCTAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGCACCTAGTTGCCGATGGTGCCCGAGGCTCCC
55685160 GCACGACCAAGGGCCTA
65 GCACGACCAAGGGCCTA
55685177 TGCTACCGGA
Statistics
Matches: 658, Mismatches: 92, Indels: 31
0.84 0.12 0.04
Matches are distributed among these distances:
170 229 0.35
171 422 0.64
172 7 0.01
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (169 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACACCAAGCACCTAGTTGCCGATGGTGCCCGAGGCTCCCG
CACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCC
GATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGTT
Found at i:55685209 original size:11 final size:11
Alignment explanation
Indices: 55685193--55685257 Score: 58
Period size: 11 Copynumber: 5.5 Consensus size: 11
55685183 CGGAACGGTT
55685193 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55685204 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55685217 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55685228 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55685241 CGCCGGAGCAC
1 CGCCGGAGCAC
55685252 CGCCGG
1 CGCCGG
55685258 GAACCTAACC
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
11 18 0.43
12 12 0.29
13 12 0.29
ACGTcount: A:0.15, C:0.40, G:0.42, T:0.03
Consensus pattern (11 bp):
CGCCGGAGCAC
Found at i:55685214 original size:24 final size:24
Alignment explanation
Indices: 55685182--55685259 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
55685172 GCCTATGCTA
* *
55685182 CCGGAACGGTTCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55685206 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55685230 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55685254 CCGGGA
1 CCGGGA
55685260 ACCTAACCGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.17, C:0.37, G:0.41, T:0.05
Consensus pattern (24 bp):
CCGGGACGGATCGCCGGAGCACCG
Found at i:55685222 original size:13 final size:13
Alignment explanation
Indices: 55685204--55685246 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
55685194 GCCGGAGCAC
55685204 CGCCGGGACGGAT
1 CGCCGGGACGGAT
* *
55685217 CGCC-GGA-GCAC
1 CGCCGGGACGGAT
55685228 CGCCGGGACGGAT
1 CGCCGGGACGGAT
55685241 CGCCGG
1 CGCCGG
55685247 AGCACCGCCG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 6 0.25
12 6 0.25
13 12 0.50
ACGTcount: A:0.14, C:0.37, G:0.44, T:0.05
Consensus pattern (13 bp):
CGCCGGGACGGAT
Found at i:55685518 original size:42 final size:42
Alignment explanation
Indices: 55685469--55685804 Score: 328
Period size: 42 Copynumber: 7.9 Consensus size: 42
55685459 ACTTTAGCTT
* * *
55685469 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
*
55685511 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
** *
55685553 TGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
** *
55685596 CAGTG-TCCGAGGCTCCCGCACAT-CATAGCACCGAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* * ** *
55685638 TGGT-CTCCGAGGCTTCC-CACAACCAAG-GGCATAGTTTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCA-AG-GTGCCGA
* *
55685680 TGGTG-TCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* *
55685722 TGGTGCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
55685765 TGGTG-TCTGAGGCTCCCACACATCCGAGCCACCAAGGTGC
1 TGGTGCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGTGC
55685805 TGGAGGCTCT
Statistics
Matches: 242, Mismatches: 36, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
40 1 0.00
41 8 0.03
42 153 0.63
43 71 0.29
44 9 0.04
ACGTcount: A:0.21, C:0.34, G:0.28, T:0.18
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:55693808 original size:42 final size:42
Alignment explanation
Indices: 55693714--55694636 Score: 537
Period size: 43 Copynumber: 21.5 Consensus size: 42
55693704 TCTTCTTTAG
* *
55693714 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCT
1 CCCGCACAT-CCAAGCACCAAGTTGCCGAT-GGTGCCCGAGGCT
*
55693758 CCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGCT
1 CCCGCACATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
* * * *
55693800 CCCGCACATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCT
1 CCCGCACATCCAAG-CACCAAGTTGCCGATGGTGCCCGAGGCT
* * *
55693843 CCCGCACATCCGAGCCACCAAGGTGCCGATGGTGGCCGAGGCT
1 CCCGCACATCCAAG-CACCAAGTTGCCGATGGTGCCCGAGGCT
** * * * *
55693886 CCCGCACGA-CCAAGGGCCGAGGTGCCGATGGTGGCCGAGGCC
1 CCCGCAC-ATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
** ** *
55693928 CCCGCACGA-CCAAGGGCCTATTTTACCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACC-AAGTTGCCGATGGTGCCCGAGGCT
** ** *
55693971 CCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCT
1 CCCGCAC-ATCCAAGCACCAAG-TTGCCGATGGTGCCCGAGGCT
* ** * *
55694014 CTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTT
1 CCCGCAC-ATCCAAGCACC-AAGTTGCCGATGGTGCCCGAGGCT
* * *
55694057 CCCGCACATCCAAGCACCAAGGTGTCGATGGTGCTCGAGGCT
1 CCCGCACATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
** * ** *
55694099 CCCGCACGA-CCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCT
1 CCCGCAC-ATCCAAGCACC-AAGTTGCCGATGGTGCCCGAGGCT
** * *
55694142 CCCGCACGA-CCAAGGGCCTAGTTTTGCCGATGGTGTCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAG--TTGCCGATGGTGCCCGAGGCT
* * ** * * *
55694186 CCCGCACATCCCAGCACCTAGGGGCCGATGGCGGCCGAGGCA
1 CCCGCACATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
** ** *
55694228 CCCGCACGA-CCAAAGGGCCTATTTTTCTCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCC-AAGCACC-AAGTTGC-CGATGGTGCCCGAGGCT
* ** ** *
55694273 CTCGCACGA-CCAAGGGCTTAGTTTGCCGATGGGTGCCCGAGCCT
1 CCCGCAC-ATCCAAGCACCAAG-TTGCCGAT-GGTGCCCGAGGCT
* ** * * * *
55694317 CTCGCACGA-CCAAGGGGCCTAGGGTGCCAAATGGTGCCCGAGGTT
1 CCCGCAC-ATCCAA-GCACC-AAGTTGCC-GATGGTGCCCGAGGCT
* * *
55694362 CCCGCACAT-CAAGCACCAAGGGTACCGATGGTGCTCGAGGCT
1 CCCGCACATCCAAGCACCAA-GTTGCCGATGGTGCCCGAGGCT
** * ** *
55694404 CCCGCACGA-CCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCT
1 CCCGCAC-ATCCAAGCACC-AAGTTGCCGATGGTGCCCGAGGCT
* * * *
55694447 -CCGTACAT-GATAGCACCGAGGTGCCGATGGT-CTCCGAGGCT
1 CCCGCACATCCA-AGCACCAAGTTGCCGATGGTGC-CCGAGGCT
* * * * * *
55694488 TCC-CACAACCAAGGGCA-TAATTTGCCGATGGTGTCCGATGCT
1 CCCGCACATCCAA--GCACCAAGTTGCCGATGGTGCCCGAGGCT
* * *
55694530 CCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCT
1 CCCGCACATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
* * * *
55694572 CCCGCACATCCAAGCATCAAGGTTACCGATGGTGTCTGAGGCT
1 CCCGCACATCCAAGCACCAA-GTTGCCGATGGTGCCCGAGGCT
* *
55694615 CCCACACATCCGAGCCACCAAG
1 CCCGCACATCCAAG-CACCAAG
55694637 GTGCTGGAGG
Statistics
Matches: 696, Mismatches: 146, Indels: 75
0.76 0.16 0.08
Matches are distributed among these distances:
41 26 0.04
42 217 0.31
43 310 0.45
44 91 0.13
45 49 0.07
46 3 0.00
ACGTcount: A:0.19, C:0.34, G:0.30, T:0.16
Consensus pattern (42 bp):
CCCGCACATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
Found at i:55693910 original size:85 final size:84
Alignment explanation
Indices: 55693734--55694640 Score: 670
Period size: 85 Copynumber: 10.6 Consensus size: 84
55693724 CCAGGCACCA
* *
55693734 AGGTGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGC
1 AGGTGCCGAT-GGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGGCCGAGGC
* ** *
55693799 TCCCGCAC-ATCCTAGCCACCG
65 TCCCGCACGA-CCAAG-GGCCT
* *
55693820 AGGTGCCGATGCTGCCCGAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGATGGTGGCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAG-CACCAAGGTGCCGATGGTGGCCGAGGC
*
55693885 TCCCGCACGACCAAGGGCCG
65 TCCCGCACGACCAAGGGCCT
* * ** *** * *
55693905 AGGTGCCGATGGTGGCCGAGGCCCCCGCACGA-CCAAGGGCCTATTTTACCGATGGTGCCCGAGG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-AAGGTGCCGATGGTGGCCGAGG
*
55693969 CTCCCGCACGACCAAGGGCTT
64 CTCCCGCACGACCAAGGGCCT
* * * ** * *
55693990 AGTTTGCCGATGGTGCCCGAGCCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGGCCGAG
* ** *
55694054 GTTCCCGCAC-ATCCAAGCACCA
63 GCTCCCGCACGA-CCAAGGGCCT
* * ** * ** *
55694076 AGGTGTCGATGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGACAGTGTCCGAGG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGGCCGAGG
55694140 CTCCCGCACGACCAAGGGCCT
64 CTCCCGCACGACCAAGGGCCT
* * * * * *
55694161 AGTTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGGGCCGATGGCGGCCGAGG
1 AG--GTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGGCCGAGG
*
55694226 CACCCGCACGACCAAAGGGCCT
64 CTCCCGCACGACC-AAGGGCCT
** * * ** ** * *
55694248 ATTTTTCTCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCTTAGTTTGCCGATGGGTGCCCG
1 A-GGTGC-CGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAG-GTGCCGAT-GGTGGCCG
* *
55694312 AGCCTCTCGCACGACCAAGGGGCCT
61 AGGCTCCCGCACGACCAA-GGGCCT
* * *
55694337 AGGGTGCCAAATGGTGCCCGAGGTTCCCGCACAT-CAAGCACCAAGGGTACCGATGGT-GCTCGA
1 A-GGTGCC-GATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAA-GGTGCCGATGGTGGC-CGA
55694400 GGCTCCCGCACGACCAAGGGCCT
62 GGCTCCCGCACGACCAAGGGCCT
** * * * * **
55694423 AGGTTGCCGACAGTGTCCGAGGCT-CCGTACAT-GATAGCACCGAGGTGCCGATGGTCTCCGAGG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGATGGTGGCCGAGG
* * *
55694486 CTTCC-CACAACCAAGGGCAT
64 CTCCCGCACGACCAAGGGCCT
** * * *
55694506 AATTTGCCGATGGTGTCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGATGGT-GCTCGAGG
1 -AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGGC-CGAGG
*** *
55694570 CTCCCGCAC-ATCCAAGCATCA
64 CTCCCGCACGA-CCAAGGGCCT
* * * * *
55694591 AGGTTACCGATGGTGTCTGAGGCTCCCACACATCCGAGCCACCAAGGTGC
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAG-CACCAAGGTGC
55694641 TGGAGGCTCT
Statistics
Matches: 660, Mismatches: 128, Indels: 66
0.77 0.15 0.08
Matches are distributed among these distances:
83 31 0.05
84 67 0.10
85 227 0.34
86 168 0.25
87 95 0.14
88 23 0.03
89 49 0.07
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.16
Consensus pattern (84 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGGCCGAGGCT
CCCGCACGACCAAGGGCCT
Found at i:55693957 original size:128 final size:125
Alignment explanation
Indices: 55693728--55694640 Score: 603
Period size: 128 Copynumber: 7.1 Consensus size: 125
55693718 CACATCCCAG
** * *
55693728 GCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGTTGCCGATGGTGT
1 GCACCAAGGTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGT
* * * * *
55693792 CCGAGGCTCCCGCACATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCGA
64 CCGAGGCTCCCGCACATCCAAG-CACCAATGT-CCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
* * *
55693856 GCCACCAAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCGAGGTGCCGATGGTGGC
1 G-CACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGTC
* ** * *
55693921 CGAGGCCCCCGCACGA-CCAAGGGCCTATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAA
65 CGAGGCTCCCGCAC-ATCCAAGCACC-AATGT-CCGATGGTGCCCGAGGCTCCCGCACGACCAA
** ** * * * *
55693984 GGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC
1 GCACCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGT
* *
55694049 CCGAGGTTCCCGCACATCCAAGCACCAAGGTGT-CGATGGTGCTCGAGGCTCCCGCACGACCAA
64 CCGAGGCTCCCGCACATCCAAGCACCAA--TGTCCGATGGTGCCCGAGGCTCCCGCACGACCAA
** * ** * *
55694112 GGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTTGCCGATGGTG
1 GCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG--GTGCCGATGGTG
* ** * * * *
55694177 TCCGAGGCTCCCGCACATCCCAGCACCTAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAA
63 TCCGAGGCTCCCGCACATCCAAGCACC-AATGTCCGATGGTGCCCGAGGCTCCCGCACGACC-AA
** *** * * * *
55694242 GGGCCTATTTTTCTCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCTTAGTTTGCCGATGGGT
1 GCACC-AAGGTGC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-GTGCCGAT-GGT
* * * ** ** * *
55694307 GCCCGAGCCTCTCGCACGA-CCAAGGGGCCTAGGGTGCCAAATGGTGCCCGAGGTTCCCGCAC-A
62 GTCCGAGGCTCCCGCAC-ATCCAA-GCACC-AATGT-CC-GATGGTGCCCGAGGCTCCCGCACGA
*
55694370 TCAA
122 CCAA
* * **
55694374 GCACCAAGGGTACCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGT
1 GCACCAA-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGT
* * * * * *
55694439 CCGAGGCT-CCGTACAT-GATAGCACCGAGGTGCCGATGGT-CTCCGAGGCTTCC-CACAACCAA
64 CCGAGGCTCCCGCACATCCA-AGCACCAATGT-CCGATGGTGC-CCGAGGCTCCCGCACGACCAA
* ** * * * ** *
55694500 GGGCA-TAATTTGCCGATGGTGTCCGATGCTCCCGCAC-ATCCATGCACCAAGGTGCCGATGGTG
1 --GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTG
* * * * *
55694563 -CTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGATGGTGTCTGAGGCTCCCACAC-ATCC
63 TC-CGAGGCTCCCGCACATCCAAGCACCAATG-T-CCGATGGTGCCCGAGGCTCCCGCACGA-CC
*
55694626 GA
124 AA
55694628 GCCACCAAGGTGC
1 G-CACCAAGGTGC
55694641 TGGAGGCTCT
Statistics
Matches: 619, Mismatches: 125, Indels: 82
0.75 0.15 0.10
Matches are distributed among these distances:
124 1 0.00
125 21 0.03
126 66 0.11
127 35 0.06
128 219 0.35
129 113 0.18
130 31 0.05
131 95 0.15
132 16 0.03
133 4 0.01
134 18 0.03
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.16
Consensus pattern (125 bp):
GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGTCC
GAGGCTCCCGCACATCCAAGCACCAATGTCCGATGGTGCCCGAGGCTCCCGCACGACCAA
Found at i:55694043 original size:171 final size:169
Alignment explanation
Indices: 55693734--55694578 Score: 744
Period size: 171 Copynumber: 4.9 Consensus size: 169
55693724 CCAGGCACCA
* ** * *
55693734 AGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAG-TTGCCGATGGTGTCCGAG
1 AGGTGCCGAT-GGTGGCCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAG
* ** * * * *
55693797 GCTCCCGCAC-ATCCTAGCCACCGAG-GTGCCGATGCTGCCCGAGGCTCCCGCACATCCGAGCCA
64 GCTCCCGCACGA-CCAAG-GGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAG-CA
* *
55693860 CCAAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCG
125 CCTAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCT
* * *
55693905 AGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATTTTACCGATGGTGCCCGAGGC
1 AGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGC
* * * **
55693970 TCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAG
66 TCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCACCTAG
* * ** *
55694035 GTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCACCA
130 G-TGCCGATGGTGGCCGAGGCTCCCGCACGA-CCAAGGGCCT
* * ** *
55694076 AGGTGTCGATGGT-GCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGG
1 AGGTGCCGATGGTGGC-CGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGG
* *
55694140 CTCCCGCACGACCAAGGGCCTAGTTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCT
65 CTCCCGCACGACCAAGGGCCTAG-TTTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGCACCT
* * *
55694205 AGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAAGGGCCT
128 AGGTGCCGATGGTGGCCGAGGCTCCCGCACGACC-AAGGGCCT
** * * * *
55694248 ATTTTTCTCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCTTAGTTTGCCGATGGGTGCCCGA
1 A-GGTGC-CGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGAT-GGTGCCCGA
* * ** * * *
55694313 GCCTCTCGCACGACCAAGGGGCCTAGGGTGCCAAATGGTGCCCGAGGTTCCCGCACATCAAGCAC
63 GGCTCCCGCACGACCAA-GGGCCTAGTTTGCC-GATGGTGCCCGAGGCTCCCGCACACCAAGCAC
* *
55694378 CAAGGGTACCGATGGT-GCTCGAGGCTCCCGCACGACCAAGGGCCT
126 CTA-GGTGCCGATGGTGGC-CGAGGCTCCCGCACGACCAAGGGCCT
** * * ** ** * *
55694423 AGGTTGCCGACAGTGTCCGAGGCT-CCGTAC-ATGATAGCACCGAG-GTGCCGATGGT-CTCCGA
1 AGG-TGCCGATGGTGGCCGAGGCTCCCGCACGACCA-AGGGCCTAGTTTGCCGATGGTGC-CCGA
* * * * * * *
55694484 GGCTTCC-CACAACCAAGGGCATAATTTGCCGATGGTGTCCGATGCTCCCGCACATCCATGCACC
63 GGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGCACC
*
55694548 AAGGTGCCGATGGT-GCTCGAGGCTCCCGCAC
127 TAGGTGCCGATGGTGGC-CGAGGCTCCCGCAC
55694579 ATCCAAGCAT
Statistics
Matches: 546, Mismatches: 104, Indels: 51
0.78 0.15 0.07
Matches are distributed among these distances:
168 48 0.09
169 19 0.03
170 46 0.08
171 212 0.39
172 54 0.10
173 10 0.02
174 54 0.10
175 48 0.09
176 55 0.10
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.16
Consensus pattern (169 bp):
AGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGC
TCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACACCAAGCACCTAGG
TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCT
Found at i:55702640 original size:42 final size:42
Alignment explanation
Indices: 55702591--55702926 Score: 310
Period size: 42 Copynumber: 7.9 Consensus size: 42
55702581 ACTTTAGCTT
* * *
55702591 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
*
55702633 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
** *
55702675 TGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
** * *
55702718 CAGTG-TCCGAGGCTCCCGTACAT-CATAGCACCGAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* * * ** *
55702760 TGGT-CTCCGAGGCTTCC-CACAACCAAGGGCA-TAATTTGCCCA
1 TGGTGCT-CGAGGCTCCCGCACATCCAA--GCACCAAGGTGCCGA
* *
55702802 TGGTG-TCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* *
55702844 TGGTGCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
55702887 TGGTG-TCTGAGGCTCCCACACATCCGAGCCACCAAGGTGC
1 TGGTGCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGTGC
55702927 TGGAGGCTCT
Statistics
Matches: 238, Mismatches: 40, Indels: 31
0.77 0.13 0.10
Matches are distributed among these distances:
41 7 0.03
42 154 0.65
43 70 0.29
44 7 0.03
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:55702825 original size:84 final size:86
Alignment explanation
Indices: 55702627--55702926 Score: 339
Period size: 85 Copynumber: 3.5 Consensus size: 86
55702617 TGCACCAAGG
*
55702627 TGCCGATGGTG-CTCGAGGCTCCCGCACATCCA-AGCACCAAGGTACCGATGGTGCTCGAGGCTC
1 TGCCGATGGTGTC-CGAGGCTCCCGCACATCCATAGCACCAAGGTGCCGATGGTGCTCGAGGCTC
* * *
55702690 CCGCACGACCAAGGGCCTAGGT
65 CCGCACAACCAAGGGCATAAGT
** * * *
55702712 TGCCGACAGTGTCCGAGGCTCCCGTACAT-CATAGCACCGAGGTGCCGATGGT-CTCCGAGGCTT
1 TGCCGATGGTGTCCGAGGCTCCCGCACATCCATAGCACCAAGGTGCCGATGGTGCT-CGAGGCTC
*
55702775 CC-CACAACCAAGGGCATAATT
65 CCGCACAACCAAGGGCATAAGT
* *
55702796 TGCCCATGGTGTCCGATGCTCCCGCACATCCAT-GCACCAAGGTGCCGATGGTGCTCGAGGCTCC
1 TGCCGATGGTGTCCGAGGCTCCCGCACATCCATAGCACCAAGGTGCCGATGGTGCTCGAGGCTCC
*
55702860 CGCACATCCAA--GCATCAAGGT
66 CGCACAACCAAGGGCAT-AA-GT
* * * *
55702881 TACCGATGGTGTCTGAGGCTCCCACACATCC-GAGCCACCAAGGTGC
1 TGCCGATGGTGTCCGAGGCTCCCGCACATCCATAG-CACCAAGGTGC
55702927 TGGAGGCTCT
Statistics
Matches: 180, Mismatches: 25, Indels: 19
0.80 0.11 0.08
Matches are distributed among these distances:
83 4 0.02
84 72 0.40
85 92 0.51
86 12 0.07
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (86 bp):
TGCCGATGGTGTCCGAGGCTCCCGCACATCCATAGCACCAAGGTGCCGATGGTGCTCGAGGCTCC
CGCACAACCAAGGGCATAAGT
Found at i:55710584 original size:11 final size:11
Alignment explanation
Indices: 55710568--55710632 Score: 58
Period size: 11 Copynumber: 5.5 Consensus size: 11
55710558 CGGAACGGTT
55710568 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55710579 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55710592 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55710603 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55710616 CGCCGGAGCAC
1 CGCCGGAGCAC
55710627 CGCCGG
1 CGCCGG
55710633 GAACCTAACC
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
11 18 0.43
12 12 0.29
13 12 0.29
ACGTcount: A:0.15, C:0.40, G:0.42, T:0.03
Consensus pattern (11 bp):
CGCCGGAGCAC
Found at i:55710589 original size:24 final size:24
Alignment explanation
Indices: 55710557--55710634 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
55710547 GCCTATGCTA
* *
55710557 CCGGAACGGTTCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55710581 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55710605 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55710629 CCGGGA
1 CCGGGA
55710635 ACCTAACCGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.17, C:0.37, G:0.41, T:0.05
Consensus pattern (24 bp):
CCGGGACGGATCGCCGGAGCACCG
Found at i:55710597 original size:13 final size:13
Alignment explanation
Indices: 55710579--55710621 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
55710569 GCCGGAGCAC
55710579 CGCCGGGACGGAT
1 CGCCGGGACGGAT
* *
55710592 CGCC-GGA-GCAC
1 CGCCGGGACGGAT
55710603 CGCCGGGACGGAT
1 CGCCGGGACGGAT
55710616 CGCCGG
1 CGCCGG
55710622 AGCACCGCCG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 6 0.25
12 6 0.25
13 12 0.50
ACGTcount: A:0.14, C:0.37, G:0.44, T:0.05
Consensus pattern (13 bp):
CGCCGGGACGGAT
Found at i:55710893 original size:42 final size:42
Alignment explanation
Indices: 55710844--55711179 Score: 319
Period size: 42 Copynumber: 7.9 Consensus size: 42
55710834 ACTTTAGCTT
* * *
55710844 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
*
55710886 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
** *
55710928 TGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
** * *
55710971 CAGTG-TCCGAGGCTCCCGTACAT-CATAGCACCGAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* * * **
55711013 TGGT-CTCCGAGGCTTCC-CACAACCAAGGGCA-TAATTTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAA--GCACCAAGGTGCCGA
* *
55711055 TGGTG-TCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* *
55711097 TGGTGCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
55711140 TGGTG-TCTGAGGCTCCCACACATCCGAGCCACCAAGGTGC
1 TGGTGCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGTGC
55711180 TGGAGGCTCT
Statistics
Matches: 240, Mismatches: 38, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
41 7 0.03
42 156 0.65
43 70 0.29
44 7 0.03
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:55714716 original size:13 final size:13
Alignment explanation
Indices: 55714698--55714740 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
55714688 TCAGAAGCAC
55714698 CGCCGGGACGGAT
1 CGCCGGGACGGAT
* *
55714711 CGCC-GGA-GCAC
1 CGCCGGGACGGAT
55714722 CGCCGGGACGGAT
1 CGCCGGGACGGAT
55714735 CGCCGG
1 CGCCGG
55714741 AGCACCGCCG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 6 0.25
12 6 0.25
13 12 0.50
ACGTcount: A:0.14, C:0.37, G:0.44, T:0.05
Consensus pattern (13 bp):
CGCCGGGACGGAT
Found at i:55714725 original size:24 final size:24
Alignment explanation
Indices: 55714693--55714753 Score: 122
Period size: 24 Copynumber: 2.5 Consensus size: 24
55714683 CCTTCTCAGA
55714693 AGCACCGCCGGGACGGATCGCCGG
1 AGCACCGCCGGGACGGATCGCCGG
55714717 AGCACCGCCGGGACGGATCGCCGG
1 AGCACCGCCGGGACGGATCGCCGG
55714741 AGCACCGCCGGGA
1 AGCACCGCCGGGA
55714754 ACCTAACCGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.18, C:0.38, G:0.41, T:0.03
Consensus pattern (24 bp):
AGCACCGCCGGGACGGATCGCCGG
Found at i:55719561 original size:43 final size:42
Alignment explanation
Indices: 55719508--55720447 Score: 791
Period size: 43 Copynumber: 22.0 Consensus size: 42
55719498 ATCCCAGGCA
* **
55719508 CCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCAAGTTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * **
55719551 CCAAGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCTAGCCA
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GG
* * * * **
55719594 CCGAGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCGAGCCA
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GG
* *
55719637 CCAAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
55719679 CCGAGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** *
55719721 CCTATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * *
55719764 CTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGG
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
55719807 CCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * *
55719850 CCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** *
55719892 CCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGG
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * **
55719935 CCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCA
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* ** * * *
55719978 CCTAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
55720020 CCTATTTTCTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * *
55720063 CTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGG
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
55720106 CCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
55720149 CCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * * **
55720191 CCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCAC-ATCATAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGG
* * *
55720234 CCGAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
55720276 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * ** * *
55720319 CCGAGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * * * * **
55720361 CTTAGTTTGCCGATGGTGTCCGGGGCTCCTGCAC-ATCCTAGCA
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
*
55720404 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
55720446 CC
1 CC
55720448 TATGCTACCG
Statistics
Matches: 721, Mismatches: 151, Indels: 51
0.78 0.16 0.06
Matches are distributed among these distances:
42 263 0.36
43 452 0.63
44 6 0.01
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (42 bp):
CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:55719687 original size:85 final size:84
Alignment explanation
Indices: 55719511--55720449 Score: 965
Period size: 85 Copynumber: 11.0 Consensus size: 84
55719501 CCAGGCACCA
* *
55719511 AGGTGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGC
1 AGGTGCCGAT-GGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
* ** *
55719576 TCCCGCAC-ATCCTAGCCACCG
65 TCCCGCACGA-CCAAG-GGCCT
* * *
55719597 AGGTGCCGATGCTGCCCGAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGATGGTGGCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAG-CACCAAGGTGCCGATGGTGCCCGAGGC
*
55719662 TCCCGCACGACCAAGGGCCG
65 TCCCGCACGACCAAGGGCCT
* * ** *** *
55719682 AGGTGCCGATGGTGGCCGAGGCCCCCGCACGA-CCAAGGGCCTATTTTACCGATGGTGCCCGAGG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-AAGGTGCCGATGGTGCCCGAGG
*
55719746 CTCCCGCACGACCAAGGGCTT
64 CTCCCGCACGACCAAGGGCCT
* * * ** *
55719767 AGTTTGCCGATGGTGCCCGAGCCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAG
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAG
* ** *
55719831 GTTCCCGCAC-ATCCAAGCACCA
63 GCTCCCGCACGA-CCAAGGGCCT
* * ** * ** *
55719853 AGGTGTCGATGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGACAGTGTCCGAGG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGG
55719917 CTCCCGCACGACCAAGGGCCT
64 CTCCCGCACGACCAAGGGCCT
* * * * * * *
55719938 AGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGGGCCGATGGCGGCCGAGGC
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
*
55720003 ACCCGCACGACCAAGGGCCT
65 TCCCGCACGACCAAGGGCCT
** * ** ** *
55720023 ATTTTCTCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAG
1 AGGTGC-CGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAG-GTGCCGATGGTGCCCGAG
* *
55720087 CCTCTCGCACGACCAAGGGCCT
63 GCTCCCGCACGACCAAGGGCCT
* *
55720109 AGGTTGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGC
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
55720174 TCCCGCACGACCAAGGGCCT
65 TCCCGCACGACCAAGGGCCT
** * * *
55720194 AGGTTGCCGACAGTGTCCGAGGCTCCCGCACAT-CATAGCACCGAGGTGCTGATGGTGCCCGAGG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGATGGTGCCCGAGG
55720258 CTCCCGCACGACCAAGGGCCT
64 CTCCCGCACGACCAAGGGCCT
* * *
55720279 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGC
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
** * * *
55720344 TCCTTCATGGCCAAGGGCTT
65 TCCCGCACGACCAAGGGCCT
* * * * *
55720364 AGTTTGCCGATGGTGTCCGGGGCTCCTGCACATCCTAGCACCAAGGTGCCGATGGTGCCCGAGGC
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
55720429 TCCCGCACGACCAAGGGCCT
65 TCCCGCACGACCAAGGGCCT
55720449 A
1 A
55720450 TGCTACCGGA
Statistics
Matches: 718, Mismatches: 117, Indels: 37
0.82 0.13 0.04
Matches are distributed among these distances:
84 7 0.01
85 491 0.68
86 217 0.30
87 3 0.00
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (84 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
CCCGCACGACCAAGGGCCT
Found at i:55719734 original size:128 final size:125
Alignment explanation
Indices: 55719505--55720449 Score: 883
Period size: 128 Copynumber: 7.4 Consensus size: 125
55719495 CACATCCCAG
** * * *
55719505 GCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGTTGCCGATGGTGT
1 GCACCAAGGTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGC
* * * *
55719569 CCGAGGCTCCCGCACATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCGA
64 CCGAGGCTCCCGCACA-CCAAG-CACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
* * *
55719633 GCCACCAAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCGAGGTGCCGATGGTGGC
1 G-CACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* ** ** *
55719698 CGAGGCCCCCGCACGACCAAGGGCCTATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAA
65 CGAGGCTCCCGCAC-ACCAAGCACCTA-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
** ** * * *
55719761 GGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC
1 GCACCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGC
* * * *
55719826 CCGAGGTTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAA
64 CCGAGGCTCCCGCACA-CCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
** * ** * * *
55719889 GGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGT
1 GCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-GTGCCGATGGTGC
* * * * *
55719954 CCGAGGCTCCCGCACATCCCAGCACCTAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAA
64 CCGAGGCTCCCGCACA-CCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
** * ** * * *
55720017 GGGCCTATTTTCTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGC
1 GCACCAAGGTGC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-GTGCCGATGGTGC
* * ** *
55720082 CCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAA
64 CCGAGGCTCCCGCAC-ACCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
* ** *
55720146 GCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTC
1 GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* * *
55720211 CGAGGCTCCCGCACATCATAGCACCGAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAA
65 CGAGGCTCCCGCACACCA-AGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
** * * ** * *
55720273 GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCACCGAGGTGCCGATGGCGC
1 GCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGC
** ** ** * * * * * *
55720337 CCGAGGCTCCTTCATGGCCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGCTCCTGCAC-ATCCTA
64 CCGAGGCTCCCGCA-CACCAAGCACCTAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
55720401 GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
1 GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
55720450 TGCTACCGGA
Statistics
Matches: 668, Mismatches: 126, Indels: 47
0.79 0.15 0.06
Matches are distributed among these distances:
127 107 0.16
128 478 0.72
129 83 0.12
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (125 bp):
GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCC
GAGGCTCCCGCACACCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
Found at i:55720482 original size:11 final size:11
Alignment explanation
Indices: 55720466--55720530 Score: 58
Period size: 11 Copynumber: 5.5 Consensus size: 11
55720456 CGGAACGGTT
55720466 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55720477 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55720490 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55720501 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55720514 CGCCGGAGCAC
1 CGCCGGAGCAC
55720525 CGCCGG
1 CGCCGG
55720531 GAACCTAACC
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
11 18 0.43
12 12 0.29
13 12 0.29
ACGTcount: A:0.15, C:0.40, G:0.42, T:0.03
Consensus pattern (11 bp):
CGCCGGAGCAC
Found at i:55720487 original size:24 final size:24
Alignment explanation
Indices: 55720455--55720532 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
55720445 GCCTATGCTA
* *
55720455 CCGGAACGGTTCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55720479 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55720503 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55720527 CCGGGA
1 CCGGGA
55720533 ACCTAACCGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.17, C:0.37, G:0.41, T:0.05
Consensus pattern (24 bp):
CCGGGACGGATCGCCGGAGCACCG
Found at i:55720495 original size:13 final size:13
Alignment explanation
Indices: 55720477--55720519 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
55720467 GCCGGAGCAC
55720477 CGCCGGGACGGAT
1 CGCCGGGACGGAT
* *
55720490 CGCC-GGA-GCAC
1 CGCCGGGACGGAT
55720501 CGCCGGGACGGAT
1 CGCCGGGACGGAT
55720514 CGCCGG
1 CGCCGG
55720520 AGCACCGCCG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 6 0.25
12 6 0.25
13 12 0.50
ACGTcount: A:0.14, C:0.37, G:0.44, T:0.05
Consensus pattern (13 bp):
CGCCGGGACGGAT
Found at i:55720855 original size:41 final size:41
Alignment explanation
Indices: 55720781--55720883 Score: 120
Period size: 41 Copynumber: 2.5 Consensus size: 41
55720771 CACCAAGGGG
* * *
55720781 CCGATGGTGCTCGAGGCTCCTGCACATCCAAGCACCTAGGTA
1 CCGAT-GTGCTCGAGGCTTCTGCACATCAAAGCACCGAGGTA
*
55720823 CCGATGTGCTCGAGGCTTC-GCACGATCAAAGCACCGAGGTG
1 CCGATGTGCTCGAGGCTTCTGCAC-ATCAAAGCACCGAGGTA
55720864 CCGATG-GTCTCCGAGGCTTC
1 CCGATGTG-CT-CGAGGCTTC
55720884 CCACAACCAA
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
40 5 0.09
41 35 0.65
42 14 0.26
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.19
Consensus pattern (41 bp):
CCGATGTGCTCGAGGCTTCTGCACATCAAAGCACCGAGGTA
Found at i:55721010 original size:43 final size:42
Alignment explanation
Indices: 55720743--55721033 Score: 172
Period size: 42 Copynumber: 6.9 Consensus size: 42
55720733 CTTTTAGCTT
* * * **
55720743 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGGGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGA
* *
55720785 TGGTGCTCGAGGCTCCTGCACATCCAAGCACCTAGGTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGA
* * * *
55720827 T-GTGCTCGAGGCT-TCGCACGATCAAAGCACCGAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTACCGA
* * ** * *
55720868 TGGT-CTCCGAGGCTTCC-CACAACCAAGGGCATAAAGCCGCAAC-A
1 TGGTGCT-CGAGGCTCCCGCACATCCAA--GCACCAAG--GTACCGA
* * * *
55720912 TCAGGAAG-T--A-G-TAACCGCACATCCATGCACCAAGGTGCCGA
1 T--GG-TGCTCGAGGCT-CCCGCACATCCAAGCACCAAGGTACCGA
*
55720953 TGGTGCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TACCGA
* *
55720996 TGGTG-TCTGAGGCTCCCACACATCCGAGCCACCAAGGT
1 TGGTGCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGT
55721034 GCTGGAGGCT
Statistics
Matches: 188, Mismatches: 38, Indels: 45
0.69 0.14 0.17
Matches are distributed among these distances:
38 1 0.01
39 3 0.02
40 6 0.03
41 40 0.21
42 77 0.41
43 39 0.21
44 17 0.09
45 2 0.01
46 2 0.01
47 1 0.01
ACGTcount: A:0.24, C:0.33, G:0.26, T:0.17
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGA
Found at i:55724717 original size:43 final size:42
Alignment explanation
Indices: 55724656--55725067 Score: 382
Period size: 43 Copynumber: 9.7 Consensus size: 42
55724646 NNNNNNNNNN
*
55724656 CCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAG-TTGCCGATGGTG
* *
55724699 CCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTA-GTTGCCGATGGTG
* ** * *
55724742 CCCGAGGTTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTG
1 CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTGCCGATGGTG
* **
55724784 CTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTA-GTTGCCGATGGTG
* * ** * * *
55724827 TCCGAGGCTCCCGCAC-ATCATAGCACCGAGGTGCTGATGGTG
1 CCCGAGGCTCCCGCACGACCA-AGGGCCTAGTTGCCGATGGTG
55724869 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTA-GTTGCCGATGGTG
* ** * * *
55724912 CCCGAGGCTCCCGCAC-ATCGAAGCACCGAGGTGCCGATGGCG
1 CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTGCCGATGGTG
** * * *
55724954 CCCGAGGCTCCTTCATGGCCAAGGGCTTAGTTTGCCGATGGTG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAG-TTGCCGATGGTG
* * * * ** * *
55724997 TCCGGGGCTCCTGCAC-ATCCTAGCACCAAGGTGCCGATGGTG
1 CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTGCCGATGGTG
55725039 CCCGAGGCTCCCGCACGACCAAGGGCCTA
1 CCCGAGGCTCCCGCACGACCAAGGGCCTA
55725068 TGCTACCGGA
Statistics
Matches: 287, Mismatches: 70, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
42 130 0.45
43 156 0.54
44 1 0.00
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (42 bp):
CCCGAGGCTCCCGCACGACCAAGGGCCTAGTTGCCGATGGTG
Found at i:55724802 original size:85 final size:85
Alignment explanation
Indices: 55724688--55725067 Score: 546
Period size: 85 Copynumber: 4.5 Consensus size: 85
55724678 GGGCTTAGTT
* * *
55724688 TGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
55724753 CGCACATCCAAGCACCAAGG
66 CGCACATCCAAGCACCAAGG
* ** *
55724773 TGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
*
55724838 CGCACAT-CATAGCACCGAGG
66 CGCACATCCA-AGCACCAAGG
*
55724858 TGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* *
55724923 CGCACATCGAAGCACCGAGG
66 CGCACATCCAAGCACCAAGG
* ** * * * * * *
55724943 TGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* *
55725008 TGCACATCCTAGCACCAAGG
66 CGCACATCCAAGCACCAAGG
55725028 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
55725068 TGCTACCGGA
Statistics
Matches: 259, Mismatches: 34, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
84 2 0.01
85 256 0.99
86 1 0.00
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (85 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
CGCACATCCAAGCACCAAGG
Found at i:55724905 original size:128 final size:128
Alignment explanation
Indices: 55724656--55725067 Score: 411
Period size: 128 Copynumber: 3.2 Consensus size: 128
55724646 NNNNNNNNNN
* * ** *
55724656 CCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAA
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGCCCGAGCCTCCCGCACGACCAA
** * *
55724721 GGGCCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCAAGGTGCCGATGGTG
66 GCACCGAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTG
* * * *
55724784 CTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCAC-ATCAT
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGCCCGAGCCTCCCGCACGACCA-
* ** *
55724848 AGCACCGAGG-TGCTGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGT
65 AGCACCGAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGT
55724911 G
128 G
* ** * ** * * ** * *
55724912 CCCGAGGCTCCCGCAC-ATCGAAGCACCGAGG-TGCCGATGGCGCCCGAGGCTCCTTCATGGCCA
1 CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGACAGTGCCCGAGCCTCCCGCACGACCA
** ** * * * * *
55724975 AGGGCTTAGTTTGCCGATGGTGTCCGGGGCTCCTGCACATCCTAGCACCAAGGTGCCGATGGTG
65 AGCACCGAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTG
55725039 CCCGAGGCTCCCGCACGACCAAGGGCCTA
1 CCCGAGGCTCCCGCACGACCAAGGGCCTA
55725068 TGCTACCGGA
Statistics
Matches: 228, Mismatches: 48, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
127 99 0.43
128 129 0.57
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (128 bp):
CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGCCCGAGCCTCCCGCACGACCAA
GCACCGAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTG
Found at i:55725100 original size:11 final size:11
Alignment explanation
Indices: 55725084--55725148 Score: 58
Period size: 11 Copynumber: 5.5 Consensus size: 11
55725074 CGGAACGGTT
55725084 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55725095 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55725108 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55725119 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55725132 CGCCGGAGCAC
1 CGCCGGAGCAC
55725143 CGCCGG
1 CGCCGG
55725149 GAACCTAACC
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
11 18 0.43
12 12 0.29
13 12 0.29
ACGTcount: A:0.15, C:0.40, G:0.42, T:0.03
Consensus pattern (11 bp):
CGCCGGAGCAC
Found at i:55725105 original size:24 final size:24
Alignment explanation
Indices: 55725073--55725150 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
55725063 GCCTATGCTA
* *
55725073 CCGGAACGGTTCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55725097 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55725121 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55725145 CCGGGA
1 CCGGGA
55725151 ACCTAACCGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.17, C:0.37, G:0.41, T:0.05
Consensus pattern (24 bp):
CCGGGACGGATCGCCGGAGCACCG
Found at i:55725113 original size:13 final size:13
Alignment explanation
Indices: 55725095--55725137 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
55725085 GCCGGAGCAC
55725095 CGCCGGGACGGAT
1 CGCCGGGACGGAT
* *
55725108 CGCC-GGA-GCAC
1 CGCCGGGACGGAT
55725119 CGCCGGGACGGAT
1 CGCCGGGACGGAT
55725132 CGCCGG
1 CGCCGG
55725138 AGCACCGCCG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 6 0.25
12 6 0.25
13 12 0.50
ACGTcount: A:0.14, C:0.37, G:0.44, T:0.05
Consensus pattern (13 bp):
CGCCGGGACGGAT
Found at i:55725409 original size:42 final size:42
Alignment explanation
Indices: 55725360--55725695 Score: 310
Period size: 42 Copynumber: 7.9 Consensus size: 42
55725350 ACTTTAGCTT
* * *
55725360 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
*
55725402 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
** *
55725444 TGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
** * *
55725487 CAGTG-TCCGAGGCTCCCGTACAT-CATAGCACCGAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* * * ** *
55725529 TGGT-CTCCGAGGCTTCC-CACAACCAAGGGCA-TAATTTGCCCA
1 TGGTGCT-CGAGGCTCCCGCACATCCAA--GCACCAAGGTGCCGA
* *
55725571 TGGTG-TCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* *
55725613 TGGTGCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
55725656 TGGTG-TCTGAGGCTCCCACACATCCGAGCCACCAAGGTGC
1 TGGTGCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGTGC
55725696 TGGAGGCTCT
Statistics
Matches: 238, Mismatches: 40, Indels: 31
0.77 0.13 0.10
Matches are distributed among these distances:
41 7 0.03
42 154 0.65
43 70 0.29
44 7 0.03
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:55725594 original size:84 final size:86
Alignment explanation
Indices: 55725396--55725695 Score: 339
Period size: 85 Copynumber: 3.5 Consensus size: 86
55725386 TGCACCAAGG
*
55725396 TGCCGATGGTG-CTCGAGGCTCCCGCACATCCA-AGCACCAAGGTACCGATGGTGCTCGAGGCTC
1 TGCCGATGGTGTC-CGAGGCTCCCGCACATCCATAGCACCAAGGTGCCGATGGTGCTCGAGGCTC
* * *
55725459 CCGCACGACCAAGGGCCTAGGT
65 CCGCACAACCAAGGGCATAAGT
** * * *
55725481 TGCCGACAGTGTCCGAGGCTCCCGTACAT-CATAGCACCGAGGTGCCGATGGT-CTCCGAGGCTT
1 TGCCGATGGTGTCCGAGGCTCCCGCACATCCATAGCACCAAGGTGCCGATGGTGCT-CGAGGCTC
*
55725544 CC-CACAACCAAGGGCATAATT
65 CCGCACAACCAAGGGCATAAGT
* *
55725565 TGCCCATGGTGTCCGATGCTCCCGCACATCCAT-GCACCAAGGTGCCGATGGTGCTCGAGGCTCC
1 TGCCGATGGTGTCCGAGGCTCCCGCACATCCATAGCACCAAGGTGCCGATGGTGCTCGAGGCTCC
*
55725629 CGCACATCCAA--GCATCAAGGT
66 CGCACAACCAAGGGCAT-AA-GT
* * * *
55725650 TACCGATGGTGTCTGAGGCTCCCACACATCC-GAGCCACCAAGGTGC
1 TGCCGATGGTGTCCGAGGCTCCCGCACATCCATAG-CACCAAGGTGC
55725696 TGGAGGCTCT
Statistics
Matches: 180, Mismatches: 25, Indels: 19
0.80 0.11 0.08
Matches are distributed among these distances:
83 4 0.02
84 72 0.40
85 92 0.51
86 12 0.07
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (86 bp):
TGCCGATGGTGTCCGAGGCTCCCGCACATCCATAGCACCAAGGTGCCGATGGTGCTCGAGGCTCC
CGCACAACCAAGGGCATAAGT
Found at i:55725908 original size:22 final size:22
Alignment explanation
Indices: 55725883--55725959 Score: 109
Period size: 22 Copynumber: 3.5 Consensus size: 22
55725873 ACCCATGAGC
**
55725883 CATGAGAGCTTAGTACGTTAGC
1 CATGAGAGCTTAGTACGTTAAA
* * *
55725905 CATGAGGGTTTAGTTCGTTAAA
1 CATGAGAGCTTAGTACGTTAAA
55725927 CATGAGAGCTTAGTACGTTAAA
1 CATGAGAGCTTAGTACGTTAAA
55725949 CATGAGAGCTT
1 CATGAGAGCTT
55725960 CGACGCCCGG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (22 bp):
CATGAGAGCTTAGTACGTTAAA
Found at i:55727017 original size:11 final size:11
Alignment explanation
Indices: 55727001--55727026 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
55726991 AAACTAACCT
55727001 GTCTCACGACG
1 GTCTCACGACG
55727012 GTCTCACGACG
1 GTCTCACGACG
55727023 GTCT
1 GTCT
55727027 AAACCCAGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.35, G:0.27, T:0.23
Consensus pattern (11 bp):
GTCTCACGACG
Found at i:55729431 original size:36 final size:36
Alignment explanation
Indices: 55729383--55729453 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
55729373 ATCAAAGGCT
*
55729383 ATAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
1 ATAATTAAAAGCTGTATACAATTAAAACTCTAAGAC
*
55729419 ATAATTAGAAGCTGTATACAATTAAAACTCTAAGA
1 ATAATTAAAAGCTGTATACAATTAAAACTCTAAGA
55729454 TTAAATAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.28
Consensus pattern (36 bp):
ATAATTAAAAGCTGTATACAATTAAAACTCTAAGAC
Found at i:55734789 original size:43 final size:41
Alignment explanation
Indices: 55734719--55735629 Score: 627
Period size: 43 Copynumber: 21.3 Consensus size: 41
55734709 TCTTCTTTAG
* *
55734719 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCT
1 CCCGCACA--CCAAGCACCAAGTTGCCGAT-GGTGCCCGAGGCT
*
55734763 CCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGCT
1 CCCGCACA-CCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
* * * *
55734805 CCCGCACATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCT
1 CCCGCACA-CCAAG-CACCAAGTTGCCGATGGTGCCCGAGGCT
* * *
55734848 CCCGCACATCCGAGCCACCAAGGTGCCGATGGTGGCCGAGGCT
1 CCCGCACA-CCAAG-CACCAAGTTGCCGATGGTGCCCGAGGCT
** * * * *
55734891 CCCGCACGACCAAGGGCCGAGGTGCCGATGGTGGCCGAGGCC
1 CCCGCAC-ACCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
** ** *
55734933 CCCGCACGACCAAGGGCCTATTTTACCGATGGTGCCCGAGGCT
1 CCCGCAC-ACCAAGCACC-AAGTTGCCGATGGTGCCCGAGGCT
** ** *
55734976 CCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCT
1 CCCGCAC-ACCAAGCACCAAG-TTGCCGATGGTGCCCGAGGCT
* ** * *
55735019 CTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTT
1 CCCGCAC-ACCAAGCACC-AAGTTGCCGATGGTGCCCGAGGCT
* * *
55735062 CCCGCACATCCAAGCACCAAGGTGTCGATGGTGCTCGAGGCT
1 CCCGCACA-CCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
** * ** *
55735104 CCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCT
1 CCCGCAC-ACCAAGCACC-AAGTTGCCGATGGTGCCCGAGGCT
** * *
55735147 CCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCT
1 CCCGCAC-ACCAAGCACCAAG-TTGCCGATGGTGCCCGAGGCT
* * ** * *
55735190 CCCGCACATCCCAGCACCTAGGGGCCGATGGTGGCCGAGGCA
1 CCCGCACA-CCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
** * * * *
55735232 CCCGCACGACCAAGGGCCTATTTTCTCAATGGTGCCCGAGGCT
1 CCCGCAC-ACCAAGCACCAAGTTGC-CGATGGTGCCCGAGGCT
** ** *
55735275 CCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCT
1 CCCGCAC-ACCAAGCACCAAG-TTGCCGATGGTGCCCGAGGCT
* ** * *
55735318 CTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTT
1 CCCGCAC-ACCAAGCACC-AAGTTGCCGATGGTGCCCGAGGCT
* *
55735361 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
1 CCCGCACA-CCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
* * ** *
55735403 CCCGCACGACCAAAGGC-CTAGGTTGCCGACAGTGTCCGAGGCT
1 CCCGCAC-ACC-AA-GCACCAAGTTGCCGATGGTGCCCGAGGCT
* * * *
55735446 CCCGGACATCATAGCACCGAGGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACACCA-AGCACC-AAGTTGCCGATGGTGCCCGAGGCT
* * * *
55735489 CCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGCT
1 CCCGCACA-CCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
** ** ** ** * *
55735531 CCTTCATGGCCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGCT
1 CCCGCA-CACCAAGCACCAAG-TTGCCGATGGTGCCCGAGGCT
* * *
55735574 CCTGCACATCCTAGCACCAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACA-CCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
55735616 CCCGCACGACCAAG
1 CCCGCAC-ACCAAG
55735630 GGCCTATGCT
Statistics
Matches: 702, Mismatches: 139, Indels: 54
0.78 0.16 0.06
Matches are distributed among these distances:
41 3 0.00
42 230 0.33
43 452 0.64
44 17 0.02
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.15
Consensus pattern (41 bp):
CCCGCACACCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
Found at i:55734962 original size:128 final size:127
Alignment explanation
Indices: 55734719--55735622 Score: 876
Period size: 128 Copynumber: 7.1 Consensus size: 127
55734709 TCTTCTTTAG
* ** *
55734719 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAA
1 CCCGCACAT-CCAAGCACCAAGGTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTA
* * * *
55734783 GTTGCCGATGGTGTCCGAGGCTCCCGCACATCCTAGCCACCGA-GGTGCCGATGCTGCCCGAGGC
63 GGTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAG-CACCTAGGGTGCCGATGGTGCCCGAGGC
55734847 T
127 T
* * *
55734848 CCCGCACATCCGAGCCACCAAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCGAGG
1 CCCGCACATCCAAG-CACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
* * ** *** *
55734913 TGCCGATGGTGGCCGAGGCCCCCGCACGA-CCAAGGGCCTATTTTACCGATGGTGCCCGAGGCT
65 TGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCTAGGGTGCCGATGGTGCCCGAGGCT
** ** * * *
55734976 CCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * * *
55735040 GTTGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACC-AAGGTGTCGATGGTGCTCGAGGCT
64 G-TGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCTAGGGTGCCGATGGTGCCCGAGGCT
** * ** *
55735104 CCCGCACGA-CCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * *
55735168 TTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGG-GCCGATGGTGGCCGAGGCA
64 -GTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCTAGGGTGCCGATGGTGCCCGAGGCT
** * ** * * *
55735232 CCCGCACGA-CCAAGGGCCTATTTTCTCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAG
1 CCCGCAC-ATCCAAGCACCAAGGTGC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * * ** * *
55735296 TTTGCCGATGGTGCCCGAGCCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGT
64 -GTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCTAGGGTGCCGATGGTGCCCGAGGC
55735360 T
127 T
* *
55735361 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAAGGCCTAGGT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-
** * *
55735426 TGCCGACAGTGTCCGAGGCTCCCGGACAT-CATAGCACCGAGGGTGCCGATGGTGCCCGAGGCT
65 TGCCGATGGTGTCCGAGGCTCCCGCACATCCA-AGCACCTAGGGTGCCGATGGTGCCCGAGGCT
* * * ** * * * *
55735489 CCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-G
* * * *
55735554 TGCCGATGGTGTCCGGGGCTCCTGCACATCCTAGCACC-AAGGTGCCGATGGTGCCCGAGGCT
65 TGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCTAGGGTGCCGATGGTGCCCGAGGCT
55735616 CCCGCAC
1 CCCGCAC
55735623 GACCAAGGGC
Statistics
Matches: 643, Mismatches: 112, Indels: 42
0.81 0.14 0.05
Matches are distributed among these distances:
127 41 0.06
128 506 0.79
129 96 0.15
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (127 bp):
CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
GCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCTAGGGTGCCGATGGTGCCCGAGGCT
Found at i:55735048 original size:171 final size:170
Alignment explanation
Indices: 55734736--55735635 Score: 868
Period size: 171 Copynumber: 5.3 Consensus size: 170
55734726 ATCCCAGGCA
** * *
55734736 CCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-AAGTTGCCGATGGTGTCC
1 CCAAGGTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* ** * * * *
55734799 GAGGCTCCCGCAC-ATCCTAGCCACCGAG-GTGCCGATGCTGCCCGAGGCTCCCGCACATCCGAG
64 GAGGCTCCCGCACGA-CCAAG-GGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAG
*
55734862 CCACCAAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGG
127 -CACCTAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGG
* * * ** *
55734907 CCGAGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATTTTACCGATGGTGCCCGA
1 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* * * **
55734972 GGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGA-CCAAGGGC
66 GGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCAC
* * **
55735036 CTAGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCA
130 CTAGG-TGCCGATGGTGGCCGAGGCTCCCGCACGA-CCAAGGG
* * ** *
55735078 CCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGA
1 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* *
55735143 GGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACC
66 GGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACC
* *
55735208 TAGGGGCCGATGGTGGCCGAGGCACCCGCACGACCAAGGG
131 TAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGG
* ** * * * *
55735248 CCTATTTTCTCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCG
1 CCAAGGTGC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * *
55735313 AGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCAC
65 AGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCAC
* *
55735378 CAAGGTGCCGATGGT-GCTCGAGGCTCCCGCACGACCAAAGG
130 CTAGGTGCCGATGGTGGC-CGAGGCTCCCGCACGACCAAGGG
* ** * * * ** * *
55735419 CCTAGGTTGCCGACAGTGTCCGAGGCTCCCGGAC-ATCATAGCACCGAGGGTGCCGATGGTGCCC
1 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGGCCTAGGTTGCCGATGGTGCCC
* ** * * * ** *** *
55735483 GAGGCTCCCGCAC-ATCGAAGCACCGAG-GTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGG
64 GAGGCTCCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGC
* * * * * * * **
55735546 GCTTAGTTTGCCGATGGTGTCCGGGGCTCCTGCAC-ATCCTAGCA
128 ACCTAG-GTGCCGATGGTGGCCGAGGCTCCCGCACGA-CCAAGGG
55735590 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
1 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
55735636 TGCTACCGGA
Statistics
Matches: 589, Mismatches: 122, Indels: 37
0.79 0.16 0.05
Matches are distributed among these distances:
170 132 0.22
171 452 0.77
172 5 0.01
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (170 bp):
CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
GGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACC
TAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGG
Found at i:55735288 original size:299 final size:296
Alignment explanation
Indices: 55734742--55735635 Score: 1163
Period size: 299 Copynumber: 3.0 Consensus size: 296
55734732 GGCACCAAGG
* *
55734742 TGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTG-TCCGAGGCTC
1 TGCCGAT-GGTGCCCGAGGTTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCT-CGAGGCTC
* ** * * * *
55734806 CCGCAC-ATCCTAGCCACCGAGG-TGCCGA-TGCTGCCCGAGGCTCCCGCACATCCGAGCCACCA
64 CCGCACGA-CCAAG-GGCCTAGGTTGCCGACAG-TGTCCGAGGCTCCCGCACA-CCAAG-CACCA
* **
55734868 AGGTGCCGATGGTGGCCGAGGCTCCCGCACGA-CCAAGGGCCGAGGTGCCGATGGTGGCCGAGGC
124 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCGAGGTGCCGATGGTGGCCGAGGC
*
55734932 CCCCGCACGACCAAGGGCCTATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAG
188 ACCCGCACGACCAAGGGCCTATTTT-CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAG
55734997 TTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGT
252 TTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGT
*
55735042 TGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCTCGAGGCTCCC
1 TGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCC
** * *
55735107 GCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTG
66 GCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCAC-ACCAAGCACCAAG-GTG
* * * *
55735172 CCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGGGCCGATGGTGGCCGAGGCACCCGC
129 CCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCGAGGTGCCGATGGTGGCCGAGGCACCCGC
*
55735237 ACGACCAAGGGCCTATTTTCTCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCC
194 ACGACCAAGGGCCTATTTTC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCC
55735302 GATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGT
258 GATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGT
55735341 TGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCC
1 TGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCC
* * * *
55735406 GCACGACCAAAGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGGACATCATAGCACCGAGGGTG
66 GCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACACCA-AGCACC-AAGGTG
* * * * **
55735471 CCGATGGTGCCCGAGGCTCCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGCTCCTTC
129 CCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCGAGGTGCCGATGGTGGCCGAGGCACCCGC
* * * * * * * * ** ** *
55735536 ATGGCCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGCTCCTGCAC-ATCCTAGCACCAAG-GTGC
194 ACGACCAAGGGCCTA-TTTTCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCTTAGTTTGC
* *
55735599 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
257 CGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTA
55735636 TGCTACCGGA
Statistics
Matches: 525, Mismatches: 57, Indels: 26
0.86 0.09 0.04
Matches are distributed among these distances:
298 53 0.10
299 456 0.87
300 16 0.03
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (296 bp):
TGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCC
GCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACACCAAGCACCAAGGTGCC
GATGGTGCCCGAGGCTCCCGCACATCCAAGCACCGAGGTGCCGATGGTGGCCGAGGCACCCGCAC
GACCAAGGGCCTATTTTCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGAT
GGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGT
Found at i:55735668 original size:11 final size:11
Alignment explanation
Indices: 55735652--55735716 Score: 58
Period size: 11 Copynumber: 5.5 Consensus size: 11
55735642 CGGAACGGTT
55735652 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55735663 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55735676 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55735687 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55735700 CGCCGGAGCAC
1 CGCCGGAGCAC
55735711 CGCCGG
1 CGCCGG
55735717 GAACCTAACC
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
11 18 0.43
12 12 0.29
13 12 0.29
ACGTcount: A:0.15, C:0.40, G:0.42, T:0.03
Consensus pattern (11 bp):
CGCCGGAGCAC
Found at i:55735673 original size:24 final size:24
Alignment explanation
Indices: 55735641--55735718 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
55735631 GCCTATGCTA
* *
55735641 CCGGAACGGTTCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55735665 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55735689 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55735713 CCGGGA
1 CCGGGA
55735719 ACCTAACCGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.17, C:0.37, G:0.41, T:0.05
Consensus pattern (24 bp):
CCGGGACGGATCGCCGGAGCACCG
Found at i:55735681 original size:13 final size:13
Alignment explanation
Indices: 55735663--55735705 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
55735653 GCCGGAGCAC
55735663 CGCCGGGACGGAT
1 CGCCGGGACGGAT
* *
55735676 CGCC-GGA-GCAC
1 CGCCGGGACGGAT
55735687 CGCCGGGACGGAT
1 CGCCGGGACGGAT
55735700 CGCCGG
1 CGCCGG
55735706 AGCACCGCCG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 6 0.25
12 6 0.25
13 12 0.50
ACGTcount: A:0.14, C:0.37, G:0.44, T:0.05
Consensus pattern (13 bp):
CGCCGGGACGGAT
Found at i:55735977 original size:42 final size:42
Alignment explanation
Indices: 55735928--55736263 Score: 328
Period size: 42 Copynumber: 7.9 Consensus size: 42
55735918 ACTTTAGCTT
* * *
55735928 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
*
55735970 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
** *
55736012 TGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
** *
55736055 CAGTG-TCCGAGGCTCCCGCACAT-CATAGCACCGAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* * ** *
55736097 TGGT-CTCCGAGGCTTCC-CACAACCAAG-GGCATAGTTTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCA-AG-GTGCCGA
* *
55736139 TGGTG-TCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* *
55736181 TGGTGCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
55736224 TGGTG-TCTGAGGCTCCCACACATCCGAGCCACCAAGGTGC
1 TGGTGCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGTGC
55736264 TGGAGGCTCT
Statistics
Matches: 242, Mismatches: 36, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
40 1 0.00
41 8 0.03
42 153 0.63
43 71 0.29
44 9 0.04
ACGTcount: A:0.21, C:0.34, G:0.28, T:0.18
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:55738251 original size:43 final size:43
Alignment explanation
Indices: 55738190--55738902 Score: 651
Period size: 43 Copynumber: 16.7 Consensus size: 43
55738180 NNNNNNNNNN
* *
55738190 CCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTAC
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGC
* * *
55738233 CCGAGCCTCTCGCACGACCAAAGGGCCTAGGTTGCCGATGGTGC
1 CCGAGGCTCCCGCACGACC-AAGGGCCTAGTTTGCCGATGGTGC
* ** * * *
55738277 CCGAGGTTTCCCGCAC-ATCCAAGCACCAAAG-GTGTCGATGGTGC
1 CCGAGG-CTCCCGCACGA-CCAAGGGCC-TAGTTTGCCGATGGTGC
* * ** *
55738321 TCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGT
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGC
*
55738364 CCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGT
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGC
* ** ** * *
55738407 CCGAGGCTCCCGCAC-ATCCCAGCACCTAG-GGGCCGATGGCGG
1 CCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGC
* *
55738449 CCGAGGCACCCGCACGACCAAGGGCCTA-TTTTCTCGATGGTGC
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGC-CGATGGTGC
*
55738492 CCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGC
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGC
* * *
55738535 CCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGC
* ** * *
55738578 CCGAGGTTCCCGCAC-ATCCAAGCACCAAG-GTGCCGATGGTGC
1 CCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGC
* * ** *
55738620 TCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGT
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGC
* ** * * *
55738663 CCGAGGCTCCCGCAC-ATCATAGCACCGAG-GTGCTGATGGTGC
1 CCGAGGCTCCCGCACGACCA-AGGGCCTAGTTTGCCGATGGTGC
*
55738705 CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGC
* ** * * *
55738748 CCGAGGCTCCCGCAC-ATCGAAGCACCGAG-GTGCCGATGGCGC
1 CCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGC
** * * * *
55738790 CCGAGGCTCCTTCATGGCCAAGGGCTTAGTTTGCCGATGGTGT
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGC
* * * ** * *
55738833 CCGGGGCTCCTGCAC-ATCCTAGCACCAAG-GTGCCGATGGTGC
1 CCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGC
55738875 CCGAGGCTCCCGCACGACCAAGGGCCTA
1 CCGAGGCTCCCGCACGACCAAGGGCCTA
55738903 TGCTACCGGA
Statistics
Matches: 531, Mismatches: 117, Indels: 45
0.77 0.17 0.06
Matches are distributed among these distances:
42 164 0.31
43 303 0.57
44 53 0.10
45 11 0.02
ACGTcount: A:0.18, C:0.34, G:0.31, T:0.16
Consensus pattern (43 bp):
CCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGC
Found at i:55738472 original size:85 final size:85
Alignment explanation
Indices: 55738190--55738902 Score: 756
Period size: 85 Copynumber: 8.3 Consensus size: 85
55738180 NNNNNNNNNN
* * * * *
55738190 CCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTACCCGAGCCTCTCGCACGA-CCAA
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCC-A
** *
55738254 AGGGCCTAGGTTGCCGATGGTGC
64 AGCACCAAGG-TGCCGATGGTGC
* ** * * *
55738277 CCGAGGTTTCCCGCAC-ATCCAAGCACCAAAGG-TGTCGATGGTGCTCGAGGCTCCCGCACGA-C
1 CCGAGG-CTCCCGCACGA-CCAAGGGCC-TAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATC
** * ** *
55738339 CAAGGGCCTAGGTTGCCGACAGTGT
62 CAAGCACCAAGG-TGCCGATGGTGC
* * *
55738364 CCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAG
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAG
* * * *
55738429 CACCTAGGGGCCGATGGCGG
66 CACCAAGGTGCCGATGGTGC
* * *
55738449 CCGAGGCACCCGCACGACCAAGGGCCTA-TTTTCTCGATGGTGCCCGAGGCTCCCGCACGA-CCA
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC-CGATGGTGCCCGAGGCTCCCGCAC-ATCCA
** ** *
55738512 AGGGCTTAGTTTGCCGATGGTGC
64 AGCACCAAG-GTGCCGATGGTGC
* * *
55738535 CCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCACATCCAAG
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAG
55738600 CACCAAGGTGCCGATGGTGC
66 CACCAAGGTGCCGATGGTGC
* ** *
55738620 TCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACAT-CATA
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCA-A
* *
55738684 GCACCGAGGTGCTGATGGTGC
65 GCACCAAGGTGCCGATGGTGC
*
55738705 CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCGAAG
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAG
* *
55738770 CACCGAGGTGCCGATGGCGC
66 CACCAAGGTGCCGATGGTGC
** * * * * * * * *
55738790 CCGAGGCTCCTTCATGGCCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGCTCCTGCACATCCTAG
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAG
55738855 CACCAAGGTGCCGATGGTGC
66 CACCAAGGTGCCGATGGTGC
55738875 CCGAGGCTCCCGCACGACCAAGGGCCTA
1 CCGAGGCTCCCGCACGACCAAGGGCCTA
55738903 TGCTACCGGA
Statistics
Matches: 527, Mismatches: 86, Indels: 28
0.82 0.13 0.04
Matches are distributed among these distances:
84 6 0.01
85 325 0.62
86 116 0.22
87 38 0.07
88 40 0.08
89 2 0.00
ACGTcount: A:0.18, C:0.34, G:0.31, T:0.16
Consensus pattern (85 bp):
CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAG
CACCAAGGTGCCGATGGTGC
Found at i:55738476 original size:128 final size:128
Alignment explanation
Indices: 55738190--55738902 Score: 742
Period size: 128 Copynumber: 5.6 Consensus size: 128
55738180 NNNNNNNNNN
* * * * *
55738190 CCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTACCCGAGCCTCTCGCACGACCAAA
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACC-AA
* * *
55738255 GGGCCTAGGTTGCCGATGGTGCCCGAGGTTTCCCGCACATCCAAGCACCAAAGGTGTCGATGGTG
65 GGGCCTAGGTTGCCGATGGTGCCCGAGG-CTCCCGCACATCCAAGCACC-TAGGTGCCGATGGTG
55738320 C
128 C
* ** *
55738321 TCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAG
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
* * * * * *
55738386 GGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGGGCCGATGGCGG
66 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGC
* * *
55738449 CCGAGGCACCCGCACGACCAAGGGCCTA-TTTTCTCGATGGTGCCCGAGGCTCCCGCACGACCAA
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC-CGATGGTGCCCGAGGCTCCCGCACGACCAA
* * * * **
55738513 GGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG
65 GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTG
55738577 C
128 C
* ** * *
55738578 CCGAGGTTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCTCCCGCACGACCAA
1 CCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
** * * *
55738641 GGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACAT-CATAGCACCGAGGTGCTGATGGTGC
65 GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCA-AGCACCTAGGTGCCGATGGTGC
*
55738705 CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAA
1 CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
** * * ** *** ** * * *
55738769 GCACCGAGG-TGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTTTGCCGATGGTGT
65 GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAG-GTGCCGATGGTGC
* * * ** *
55738833 CCGGGGCTCCTGCAC-ATCCTAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
1 CCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
55738896 GGGCCTA
65 GGGCCTA
55738903 TGCTACCGGA
Statistics
Matches: 479, Mismatches: 89, Indels: 32
0.80 0.15 0.05
Matches are distributed among these distances:
127 102 0.21
128 245 0.51
129 51 0.11
130 28 0.06
131 53 0.11
ACGTcount: A:0.18, C:0.34, G:0.31, T:0.16
Consensus pattern (128 bp):
CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGC
Found at i:55738935 original size:11 final size:11
Alignment explanation
Indices: 55738919--55738983 Score: 58
Period size: 11 Copynumber: 5.5 Consensus size: 11
55738909 CGGAACGGTT
55738919 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55738930 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55738943 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55738954 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55738967 CGCCGGAGCAC
1 CGCCGGAGCAC
55738978 CGCCGG
1 CGCCGG
55738984 GAACCTAACC
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
11 18 0.43
12 12 0.29
13 12 0.29
ACGTcount: A:0.15, C:0.40, G:0.42, T:0.03
Consensus pattern (11 bp):
CGCCGGAGCAC
Found at i:55738940 original size:24 final size:24
Alignment explanation
Indices: 55738908--55738985 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
55738898 GCCTATGCTA
* *
55738908 CCGGAACGGTTCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55738932 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55738956 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55738980 CCGGGA
1 CCGGGA
55738986 ACCTAACCGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.17, C:0.37, G:0.41, T:0.05
Consensus pattern (24 bp):
CCGGGACGGATCGCCGGAGCACCG
Found at i:55738948 original size:13 final size:13
Alignment explanation
Indices: 55738930--55738972 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
55738920 GCCGGAGCAC
55738930 CGCCGGGACGGAT
1 CGCCGGGACGGAT
* *
55738943 CGCC-GGA-GCAC
1 CGCCGGGACGGAT
55738954 CGCCGGGACGGAT
1 CGCCGGGACGGAT
55738967 CGCCGG
1 CGCCGG
55738973 AGCACCGCCG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 6 0.25
12 6 0.25
13 12 0.50
ACGTcount: A:0.14, C:0.37, G:0.44, T:0.05
Consensus pattern (13 bp):
CGCCGGGACGGAT
Found at i:55739244 original size:42 final size:42
Alignment explanation
Indices: 55739195--55739530 Score: 310
Period size: 42 Copynumber: 7.9 Consensus size: 42
55739185 ACTTTAGCTT
* * *
55739195 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
*
55739237 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
** *
55739279 TGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
** * *
55739322 CAGTG-TCCGAGGCTCCCGTACAT-CATAGCACCGAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* * * ** *
55739364 TGGT-CTCCGAGGCTTCC-CACAACCAAGGGCA-TAATTTGCCCA
1 TGGTGCT-CGAGGCTCCCGCACATCCAA--GCACCAAGGTGCCGA
* *
55739406 TGGTG-TCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* *
55739448 TGGTGCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
55739491 TGGTG-TCTGAGGCTCCCACACATCCGAGCCACCAAGGTGC
1 TGGTGCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGTGC
55739531 TGGAGGCTCT
Statistics
Matches: 238, Mismatches: 40, Indels: 31
0.77 0.13 0.10
Matches are distributed among these distances:
41 7 0.03
42 154 0.65
43 70 0.29
44 7 0.03
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:55739429 original size:84 final size:86
Alignment explanation
Indices: 55739231--55739530 Score: 339
Period size: 85 Copynumber: 3.5 Consensus size: 86
55739221 TGCACCAAGG
*
55739231 TGCCGATGGTG-CTCGAGGCTCCCGCACATCCA-AGCACCAAGGTACCGATGGTGCTCGAGGCTC
1 TGCCGATGGTGTC-CGAGGCTCCCGCACATCCATAGCACCAAGGTGCCGATGGTGCTCGAGGCTC
* * *
55739294 CCGCACGACCAAGGGCCTAGGT
65 CCGCACAACCAAGGGCATAAGT
** * * *
55739316 TGCCGACAGTGTCCGAGGCTCCCGTACAT-CATAGCACCGAGGTGCCGATGGT-CTCCGAGGCTT
1 TGCCGATGGTGTCCGAGGCTCCCGCACATCCATAGCACCAAGGTGCCGATGGTGCT-CGAGGCTC
*
55739379 CC-CACAACCAAGGGCATAATT
65 CCGCACAACCAAGGGCATAAGT
* *
55739400 TGCCCATGGTGTCCGATGCTCCCGCACATCCAT-GCACCAAGGTGCCGATGGTGCTCGAGGCTCC
1 TGCCGATGGTGTCCGAGGCTCCCGCACATCCATAGCACCAAGGTGCCGATGGTGCTCGAGGCTCC
*
55739464 CGCACATCCAA--GCATCAAGGT
66 CGCACAACCAAGGGCAT-AA-GT
* * * *
55739485 TACCGATGGTGTCTGAGGCTCCCACACATCC-GAGCCACCAAGGTGC
1 TGCCGATGGTGTCCGAGGCTCCCGCACATCCATAG-CACCAAGGTGC
55739531 TGGAGGCTCT
Statistics
Matches: 180, Mismatches: 25, Indels: 19
0.80 0.11 0.08
Matches are distributed among these distances:
83 4 0.02
84 72 0.40
85 92 0.51
86 12 0.07
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (86 bp):
TGCCGATGGTGTCCGAGGCTCCCGCACATCCATAGCACCAAGGTGCCGATGGTGCTCGAGGCTCC
CGCACAACCAAGGGCATAAGT
Found at i:55746060 original size:43 final size:42
Alignment explanation
Indices: 55746007--55746903 Score: 748
Period size: 43 Copynumber: 21.0 Consensus size: 42
55745997 ATCCCAGGCA
* **
55746007 CCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCAAGTTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * **
55746050 CCAAGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCTAGCCA
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GG
* * * * **
55746093 CCGAGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCGAGCCA
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GG
* *
55746136 CCAAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
55746178 CCGAGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** *
55746220 CCTATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * * **
55746263 CTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGCA
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
55746306 CCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** *
55746348 CCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGG
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * **
55746391 CCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCA
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* ** * * *
55746434 CCTAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
55746476 CCTATTTTCTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * *
55746519 CTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGG
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
55746562 CCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
55746605 CCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * * **
55746647 CCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCAC-ATCATAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGG
* * *
55746690 CCGAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
55746732 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * ** * *
55746775 CCGAGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * * * * **
55746817 CTTAGTTTGCCGATGGTGTCCGGGGCTCCTGCAC-ATCCTAGCA
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
*
55746860 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
55746902 CC
1 CC
55746904 TATGCTACCG
Statistics
Matches: 685, Mismatches: 147, Indels: 45
0.78 0.17 0.05
Matches are distributed among these distances:
42 261 0.38
43 419 0.61
44 5 0.01
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (42 bp):
CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:55746186 original size:85 final size:83
Alignment explanation
Indices: 55745990--55746905 Score: 873
Period size: 85 Copynumber: 10.7 Consensus size: 83
55745980 TCTTCTTTAG
* * ** *
55745990 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAA
1 CCCGCACA--CCAAGCACCGAGGTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTA
* *
55746054 GTTGCCGATGGTGTCCGAGGCT
62 GGTGCCGATGGTGCCCGAGGCT
* * * ** *
55746076 CCCGCACATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCGAGCCACCAA
1 CCCGCACA-CCAAG-CACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GGCCTA
*
55746140 GGTGCCGATGGTGGCCGAGGCT
62 GGTGCCGATGGTGCCCGAGGCT
** * * **
55746162 CCCGCACGACCAAGGGCCGAGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATTT
1 CCCGCAC-ACCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA-GG
*
55746227 TACCGATGGTGCCCGAGGCT
64 TGCCGATGGTGCCCGAGGCT
** ** * * * ** *
55746247 CCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGCACCAAGG
1 CCCGCAC-ACCAAGCACCGAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
* *
55746312 TGTCGATGGTGCTCGAGGCT
64 TGCCGATGGTGCCCGAGGCT
** * ** *
55746332 CCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGT
1 CCCGCAC-ACCAAGCACCGAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-
* *
55746397 TTGCCGATGGTGTCCGAGGCT
63 GTGCCGATGGTGCCCGAGGCT
* * * * * * **
55746418 CCCGCACATCCCAGCACCTAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGGCCTATTT
1 CCCGCACA-CCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
55746483 TCTCGATGGTGCCCGAGGCT
65 GC-CGATGGTGCCCGAGGCT
** ** * * *
55746503 CCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGG
1 CCCGCAC-ACCAAGCACCGAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
*
55746568 TTGCCGATGGTGCCCGAGGTT
64 -TGCCGATGGTGCCCGAGGCT
* *
55746589 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 CCCGCACA-CCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-
** *
55746654 TGCCGACAGTGTCCGAGGCT
64 TGCCGATGGTGCCCGAGGCT
* *
55746674 CCCGCACATCATAGCACCGAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 CCCGCACACCA-AGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-
55746739 TGCCGATGGTGCCCGAGGCT
64 TGCCGATGGTGCCCGAGGCT
* * ** * * * *
55746759 CCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTT
1 CCCGCACA-CCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-G
* *
55746824 TGCCGATGGTGTCCGGGGCT
64 TGCCGATGGTGCCCGAGGCT
* * *
55746844 CCTGCACATCCTAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
1 CCCGCACA-CCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
55746906 TGCTACCGGA
Statistics
Matches: 694, Mismatches: 119, Indels: 35
0.82 0.14 0.04
Matches are distributed among these distances:
84 8 0.01
85 489 0.70
86 194 0.28
87 3 0.00
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.15
Consensus pattern (83 bp):
CCCGCACACCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTG
CCGATGGTGCCCGAGGCT
Found at i:55746233 original size:128 final size:126
Alignment explanation
Indices: 55746010--55746905 Score: 822
Period size: 128 Copynumber: 7.0 Consensus size: 126
55746000 CCAGGCACCA
* *
55746010 AGGTGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGC
1 AGGTGCCGAT-GGTGCCCGAGGCTCCCGCACA-CCAAGCACCAAGGTGCCGATGGTGGCCGAGGC
* ** * * * **
55746075 TCCCGCAC-ATCCTAGCCACCGAGG-TGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCGAGCCAC
64 TCCCGCACGA-CCAAG-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GGC
*
55746137 CA
125 CT
* ** * *
55746139 AGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCGAGGTGCCGATGGTGGCCGAGGCC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCACCAAGGTGCCGATGGTGGCCGAGGCT
** * *
55746204 CCCGCACGACCAAGGGCCTATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTT
65 CCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * * *
55746266 AGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGCACCAAGGTGTCGATGGT-GCTCGAGG
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCACCAAGGTGCCGATGGTGGC-CGAGG
** *
55746330 CTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCT
63 CTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * * * * *
55746394 AGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGGGCCGATGGCGGCCGAGGC
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGCACCAAGGTGCCGATGGTGGCCGAGGC
* * * *
55746459 ACCCGCACGACCAAGGGCCTA-TTTTCTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTT
64 TCCCGCACGACCAAGGGCCTAGGTTGC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * * ** * *
55746522 AGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGG
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCACCAAGG-TGCCGATGGTGGCCGAGG
* ** * *
55746587 TTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCT
63 CTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
** * * * * *
55746650 AGGTTGCCGACAGTGTCCGAGGCTCCCGCACATCATAGCACCGAGGTGCTGATGGTGCCCGAGGC
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACACCA-AGCACCAAGGTGCCGATGGTGGCCGAGGC
* ** *
55746715 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCACCG
64 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT
* ** ** ** ** * * *
55746778 AGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGCACCAAG-GTGCCGATGGTGGCCGAGGC
* * ** *
55746843 TCCTGCAC-ATCCTAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
64 TCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
55746905 A
1 A
55746906 TGCTACCGGA
Statistics
Matches: 630, Mismatches: 115, Indels: 46
0.80 0.15 0.06
Matches are distributed among these distances:
127 111 0.18
128 471 0.75
129 48 0.08
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (126 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACACCAAGCACCAAGGTGCCGATGGTGGCCGAGGCTC
CCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
Found at i:55746476 original size:256 final size:251
Alignment explanation
Indices: 55746013--55746905 Score: 960
Period size: 256 Copynumber: 3.5 Consensus size: 251
55746003 GGCACCAAGG
* * *
55746013 TGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGTTGCCGATGGTG-TCCGAGGCT
1 TGCCGAT-GGTGCCCGAGCCTCTCGCACGA-CCAAGCACCAAGGTGCCGATGGTGCT-CGAGGCT
* * * * ** *
55746076 CCCGCACATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCGAGCCACCAA
63 CCCGCACATCCAAG-CACCAAGGTGCCGAAG-TG-CCGAGGCTCCCGCACGA-CCAAG-GGCCTA
* * ** *
55746140 GGTGCCGATGGTGGCCGAGGCTCCCGCACGA-CCAAGGGCCGAGGTGCCGATGGTGGCCGAGGCC
123 GTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCGAGGTGCCGATGGTGGCCGAGGCA
55746204 CCCGCACGACCAAGGGCCTATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGT
187 CCCGCACGACCAAGGGCCTATTTT-CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGT
55746269 T
251 T
*
55746270 TGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGCACCAAGGTGTCGATGGTGCTCGAGGCTCCC
1 TGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCC
** *
55746335 GCACGA-CCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGTTT
66 GCAC-ATCCAAGCACCAAGG-TGCCGA-AGTG-CCGAGGCTCCCGCACGACCAAGGGCCTAG-TT
* * * *
55746399 GCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGGGCCGATGGCGGCCGAGGCACCCG
126 GCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCGAGGTGCCGATGGTGGCCGAGGCACCCG
55746464 CACGACCAAGGGCCTATTTTCTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTT
191 CACGACCAAGGGCCTATTTTC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTT
** * * *
55746526 TGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTTCC
1 TGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCTCC
*
55746591 CGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
65 CGCACATCCAAGCACCAAGGTGCCGA-AGTGC-CGAGGCTCCCGCACGACCAAGGGCCTA-GTTG
** * * *
55746656 CCGACAGTGTCCGAGGCTCCCGCACAT-CATAGCACCGAGGTGCTGATGGTGCCCGAGGCTCCCG
127 CCGATGGTGTCCGAGGCTCCCGCACATCCA-AGCACCGAGGTGCCGATGGTGGCCGAGGCACCCG
* * * ** ** *
55746720 CACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCACCGAG-G
191 CACGACCAAGGGCCTA-TTTTCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCTTAGTT
* * * * * ** ** * *
55746781 TGCCGATGGCGCCCGAGGCTC-CTTCATGGCCAAGGGCTTAGTTTGCCGATGGTG-TCCGGGGCT
1 TGCCGATGGTGCCCGAGCCTCTC-GCACGACCAAGCACCAAG-GTGCCGATGGTGCT-CGAGGCT
* * *
55746844 CCTGCACATCCTAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
63 CCCGCACATCCAAGCACCAAGGTGCCGA-AGTG-CCGAGGCTCCCGCACGACCAAGGGCCTA
55746906 TGCTACCGGA
Statistics
Matches: 553, Mismatches: 63, Indels: 42
0.84 0.10 0.06
Matches are distributed among these distances:
254 1 0.00
255 121 0.22
256 381 0.69
257 50 0.09
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (251 bp):
TGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCC
GCACATCCAAGCACCAAGGTGCCGAAGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGTTGCCGA
TGGTGTCCGAGGCTCCCGCACATCCAAGCACCGAGGTGCCGATGGTGGCCGAGGCACCCGCACGA
CCAAGGGCCTATTTTCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTT
Found at i:55746943 original size:24 final size:24
Alignment explanation
Indices: 55746924--55746988 Score: 130
Period size: 24 Copynumber: 2.7 Consensus size: 24
55746914 GAACGGTTCA
55746924 CCGGAGCACCGCCGGGACGGATCG
1 CCGGAGCACCGCCGGGACGGATCG
55746948 CCGGAGCACCGCCGGGACGGATCG
1 CCGGAGCACCGCCGGGACGGATCG
55746972 CCGGAGCACCGCCGGGA
1 CCGGAGCACCGCCGGGA
55746989 ACCTAACCGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.17, C:0.38, G:0.42, T:0.03
Consensus pattern (24 bp):
CCGGAGCACCGCCGGGACGGATCG
Found at i:55746951 original size:13 final size:13
Alignment explanation
Indices: 55746933--55746975 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
55746923 ACCGGAGCAC
55746933 CGCCGGGACGGAT
1 CGCCGGGACGGAT
* *
55746946 CGCC-GGA-GCAC
1 CGCCGGGACGGAT
55746957 CGCCGGGACGGAT
1 CGCCGGGACGGAT
55746970 CGCCGG
1 CGCCGG
55746976 AGCACCGCCG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 6 0.25
12 6 0.25
13 12 0.50
ACGTcount: A:0.14, C:0.37, G:0.44, T:0.05
Consensus pattern (13 bp):
CGCCGGGACGGAT
Found at i:55747247 original size:42 final size:42
Alignment explanation
Indices: 55747198--55747533 Score: 319
Period size: 42 Copynumber: 7.9 Consensus size: 42
55747188 ACTTTAGCTT
* * *
55747198 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
*
55747240 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
** *
55747282 TGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
** * *
55747325 CAGTG-TCCGAGGCTCCCGTACAT-CATAGCACCGAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* * * **
55747367 TGGT-CTCCGAGGCTTCC-CACAACCAAGGGCA-TAATTTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAA--GCACCAAGGTGCCGA
* *
55747409 TGGTG-TCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* *
55747451 TGGTGCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
55747494 TGGTG-TCTGAGGCTCCCACACATCCGAGCCACCAAGGTGC
1 TGGTGCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGTGC
55747534 TGGAGGCTCT
Statistics
Matches: 240, Mismatches: 38, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
41 7 0.03
42 156 0.65
43 70 0.29
44 7 0.03
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:55755515 original size:43 final size:42
Alignment explanation
Indices: 55755445--55756091 Score: 543
Period size: 43 Copynumber: 15.2 Consensus size: 42
55755435 TCTTCTTTAG
*
55755445 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCT
1 CCCGCACAT-CCAAGCACCAAGGTGCCGAT-GGTGCCCGAGGCT
* *
55755489 CCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
* * *
55755531 CCCGCACATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCT
1 CCCGCACATCCAAG-CACCAAGGTGCCGATGGTGCCCGAGGCT
* *
55755574 CCCGCACATCCGAGCCACCAAGGTGCCGATGGTGGCCGAGGCT
1 CCCGCACATCCAAG-CACCAAGGTGCCGATGGTGCCCGAGGCT
** * * * * *
55755617 CCCGCACGA-CCAAGGGCCGAGGGGCCGATGGCGGCCGAGGCA
1 CCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
** * ** *
55755659 CCCGCACGA-CCAAGGGCCTATTTTCTCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGGTGC-CGATGGTGCCCGAGGCT
** ** * *
55755702 CCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCT
1 CCCGCAC-ATCCAAGCACCAAG-GTGCCGATGGTGCCCGAGGCT
* ** * *
55755745 CTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
*
55755788 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
** * ** *
55755830 CCCGCACGA-CCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
* *
55755873 CCCGCACAT-CATAGCACCGAGGTGCTGATGGTGCCCGAGGCT
1 CCCGCACATCCA-AGCACCAAGGTGCCGATGGTGCCCGAGGCT
** *
55755915 CCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
* * *
55755958 CCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
** *** ** ** * * *
55756000 CCTTCATGGCCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGCT
1 CCCGCACATCCAAGCACCAAG-GTGCCGATGGTGCCCGAGGCT
* *
55756043 CCTGCACATCCTAGCACCAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
55756085 CCCGCAC
1 CCCGCAC
55756092 GACCAAGGGC
Statistics
Matches: 496, Mismatches: 92, Indels: 32
0.80 0.15 0.05
Matches are distributed among these distances:
42 191 0.39
43 292 0.59
44 13 0.03
ACGTcount: A:0.18, C:0.36, G:0.32, T:0.15
Consensus pattern (42 bp):
CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
Found at i:55755644 original size:85 final size:85
Alignment explanation
Indices: 55755445--55756104 Score: 733
Period size: 85 Copynumber: 7.7 Consensus size: 85
55755435 TCTTCTTTAG
* * **
55755445 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-A
1 CCCGCACAT-CCAAGCACCGAGGTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTA
* *
55755508 AGTTGCCGATGGTGTCCGAGGCT
63 GGTTGCCGATGGTGCCCGAGGCT
* * * ** *
55755531 CCCGCACATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCGAGCCACCAA
1 CCCGCACATCCAAG-CACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GGCCTA
*
55755595 GG-TGCCGATGGTGGCCGAGGCT
63 GGTTGCCGATGGTGCCCGAGGCT
** * * * * *
55755617 CCCGCACGA-CCAAGGGCCGAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGGCCTA-T
1 CCCGCAC-ATCCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
*
55755680 TTTCTCGATGGTGCCCGAGGCT
65 TTGC-CGATGGTGCCCGAGGCT
** ** * * *
55755702 CCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCGAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
*
55755766 GTTGCCGATGGTGCCCGAGGTT
64 GTTGCCGATGGTGCCCGAGGCT
* *
55755788 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 CCCGCACATCCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** *
55755853 TGCCGACAGTGTCCGAGGCT
66 TGCCGATGGTGCCCGAGGCT
*
55755873 CCCGCACAT-CATAGCACCGAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
1 CCCGCACATCCA-AGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
55755937 TTGCCGATGGTGCCCGAGGCT
65 TTGCCGATGGTGCCCGAGGCT
* * ** * * * *
55755958 CCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTT
1 CCCGCACATCCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
55756023 TGCCGATGGTGTCCGGGGCT
66 TGCCGATGGTGCCCGAGGCT
* * *
55756043 CCTGCACATCCTAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
1 CCCGCACATCCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
55756105 TGCTACCGGA
Statistics
Matches: 489, Mismatches: 73, Indels: 25
0.83 0.12 0.04
Matches are distributed among these distances:
84 7 0.01
85 352 0.72
86 124 0.25
87 6 0.01
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (85 bp):
CCCGCACATCCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
TGCCGATGGTGCCCGAGGCT
Found at i:55755689 original size:128 final size:125
Alignment explanation
Indices: 55755445--55756091 Score: 555
Period size: 128 Copynumber: 5.1 Consensus size: 125
55755435 TCTTCTTTAG
* *
55755445 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAG
1 CCCGCACAT-CCAAGCACCAAGGTGCCGAT-GGTGCCCGAGGCTCCCGCACA-CCAAGCACCGAG
* * * * *
55755510 TTGCCGATGGTGTCCGAGGCTCCCGCACATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCT
63 GTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAG-CACCTAGGTGCCGATGGTGCCCGAGGCT
* * **
55755574 CCCGCACATCCGAGCCACCAAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCGAGG
1 CCCGCACATCCAAG-CACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCACCGAGG
* * * * ** ** *
55755639 GGCCGATGGCGGCCGAGGCACCCGCACGA-CCAAGGGCCTATTTTCTCGATGGTGCCCGAGGCT
64 TGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAGGTGC-CGATGGTGCCCGAGGCT
** ** * * * ** *
55755702 CCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCACCGAG
* * *
55755766 GTTGCCGATGGTGCCCGAGGTTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
63 G-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCT
** * ** * *
55755830 CCCGCACGA-CCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACATCATAGCACCGAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACACCA-AGCACCGAG
* **
55755894 GTGCTGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
63 GTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCT
* * * ** ** ** ** *
55755958 CCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGCACCGAG-G
* * * * *
55756023 TGCCGATGGTGTCCGGGGCTCCTGCACATCCTAGCACCAAGGTGCCGATGGTGCCCGAGGCT
64 TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCT
55756085 CCCGCAC
1 CCCGCAC
55756092 GACCAAGGGC
Statistics
Matches: 418, Mismatches: 84, Indels: 34
0.78 0.16 0.06
Matches are distributed among these distances:
127 100 0.24
128 259 0.62
129 59 0.14
ACGTcount: A:0.18, C:0.36, G:0.32, T:0.15
Consensus pattern (125 bp):
CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACACCAAGCACCGAGGTG
CCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCT
Found at i:55756137 original size:11 final size:11
Alignment explanation
Indices: 55756121--55756185 Score: 58
Period size: 11 Copynumber: 5.5 Consensus size: 11
55756111 CGGAACGGTT
55756121 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55756132 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55756145 CGCCGGAGCAC
1 CGCCGGAGCAC
* *
55756156 CGCCGGGACGGAT
1 CGCC-GGA-GCAC
55756169 CGCCGGAGCAC
1 CGCCGGAGCAC
55756180 CGCCGG
1 CGCCGG
55756186 GAACCTAACC
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
11 18 0.43
12 12 0.29
13 12 0.29
ACGTcount: A:0.15, C:0.40, G:0.42, T:0.03
Consensus pattern (11 bp):
CGCCGGAGCAC
Found at i:55756142 original size:24 final size:24
Alignment explanation
Indices: 55756110--55756187 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
55756100 GCCTATGCTA
* *
55756110 CCGGAACGGTTCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55756134 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55756158 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55756182 CCGGGA
1 CCGGGA
55756188 ACCTAACCGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.17, C:0.37, G:0.41, T:0.05
Consensus pattern (24 bp):
CCGGGACGGATCGCCGGAGCACCG
Found at i:55756150 original size:13 final size:13
Alignment explanation
Indices: 55756132--55756174 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
55756122 GCCGGAGCAC
55756132 CGCCGGGACGGAT
1 CGCCGGGACGGAT
* *
55756145 CGCC-GGA-GCAC
1 CGCCGGGACGGAT
55756156 CGCCGGGACGGAT
1 CGCCGGGACGGAT
55756169 CGCCGG
1 CGCCGG
55756175 AGCACCGCCG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 6 0.25
12 6 0.25
13 12 0.50
ACGTcount: A:0.14, C:0.37, G:0.44, T:0.05
Consensus pattern (13 bp):
CGCCGGGACGGAT
Found at i:55756446 original size:42 final size:42
Alignment explanation
Indices: 55756397--55756732 Score: 319
Period size: 42 Copynumber: 7.9 Consensus size: 42
55756387 ACTTTAGCTT
* * *
55756397 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
*
55756439 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
** *
55756481 TGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
** * *
55756524 CAGTG-TCCGAGGCTCCCGTACAT-CATAGCACCGAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* * * **
55756566 TGGT-CTCCGAGGCTTCC-CACAACCAAGGGCA-TAATTTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAA--GCACCAAGGTGCCGA
* *
55756608 TGGTG-TCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* *
55756650 TGGTGCTCGAGGCTCCCGCACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
55756693 TGGTG-TCTGAGGCTCCCACACATCCGAGCCACCAAGGTGC
1 TGGTGCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGTGC
55756733 TGGAGGCTCT
Statistics
Matches: 240, Mismatches: 38, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
41 7 0.03
42 156 0.65
43 70 0.29
44 7 0.03
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:55764713 original size:43 final size:42
Alignment explanation
Indices: 55764660--55765641 Score: 798
Period size: 43 Copynumber: 23.0 Consensus size: 42
55764650 ATCCCAGGCA
* **
55764660 CCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCAAGTTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * **
55764703 CCAAGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCTAGCCA
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GG
* * * * **
55764746 CCGAGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCGAGCCA
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GG
* *
55764789 CCAAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
55764831 CCGAGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** *
55764873 CCTATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * *
55764916 CTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGG
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
55764959 CCTAGGTTGCCGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * *
55765002 CCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** *
55765044 CCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGG
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * **
55765087 CCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCA
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* ** * * *
55765130 CCTAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
55765172 CCTA-TGGGCCGATGGCAG-CCGAGGCACCCGCACGACCAAGGG
1 CCAAGT-TGCCGATGG-TGCCCGAGGCTCCCGCACGACCAAGGG
* * *
55765214 CCTATTTTCTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGC-CGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * *
55765257 CTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGG
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * **
55765300 CCTAGGTTGCCGATGGTGCCCGAGGTTCTCGCAC-ATCCAAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
55765343 CCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * * **
55765385 CCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCAC-ATCATAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGG
* * *
55765428 CCGAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
55765470 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCA
1 CC-AAGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * ** * *
55765513 CCGAGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
** * * * * **
55765555 CTTAGTTTGCCGATGGTGTCCGGGGCTCCTGCAC-ATCCTAGCA
1 CCAAG-TTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
*
55765598 CCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
55765640 CC
1 CC
55765642 TATGCTACCG
Statistics
Matches: 760, Mismatches: 150, Indels: 59
0.78 0.15 0.06
Matches are distributed among these distances:
42 300 0.39
43 454 0.60
44 6 0.01
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (42 bp):
CCAAGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:55764839 original size:85 final size:84
Alignment explanation
Indices: 55764643--55765643 Score: 976
Period size: 85 Copynumber: 11.7 Consensus size: 84
55764633 TCTTCTTTAG
* * **
55764643 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-A
1 CCCGCACA--CCAAGCACCGAGGTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTA
* *
55764706 AGTTGCCGATGGTGTCCGAGGCT
62 GGTTGCCGATGGTGCCCGAGGCT
* * * ** *
55764729 CCCGCACATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCGAGCCACCAA
1 CCCGCACA-CCAAG-CACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GGCCTA
*
55764793 GG-TGCCGATGGTGGCCGAGGCT
62 GGTTGCCGATGGTGCCCGAGGCT
** * * **
55764815 CCCGCACGACCAAGGGCCGAGGTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATTT
1 CCCGCAC-ACCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
55764880 TACCGATGGTGCCCGAGGCT
65 TGCCGATGGTGCCCGAGGCT
** ** * * *
55764900 CCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGG
1 CCCGCAC-ACCAAGCACCGAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
*
55764965 TTGCCGATGGTGCCCGAGGTT
64 TTGCCGATGGTGCCCGAGGCT
* * *
55764986 CCCGCACATCCAAGCACCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 CCCGCACA-CCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** *
55765051 TGCCGACAGTGTCCGAGGCT
65 TGCCGATGGTGCCCGAGGCT
** * * * * **
55765071 CCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCACCTAG
1 CCCGCAC-ACCAAGCACCGAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAG
* * * *
55765135 G-GGCCGATGGCGGCCGAGGCA
63 GTTGCCGATGGTGCCCGAGGCT
** * * *
55765156 CCCGCACGACCAAGGGCCTATGG-GCCGATGGCAG-CCGAGGCACCCGCACGACCAAGGGCCTA-
1 CCCGCAC-ACCAAGCACCGA-GGTGCCGATGG-TGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* *
55765218 TTTTCTCGATGGTGCCCGAGGCT
63 GTTGC-CGATGGTGCCCGAGGCT
** ** * * *
55765241 CCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGG
1 CCCGCAC-ACCAAGCACCGAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
*
55765306 TTGCCGATGGTGCCCGAGGTT
64 TTGCCGATGGTGCCCGAGGCT
* * *
55765327 CTCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 CCCGCACA-CCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** *
55765392 TGCCGACAGTGTCCGAGGCT
65 TGCCGATGGTGCCCGAGGCT
* *
55765412 CCCGCACATCATAGCACCGAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 CCCGCACACCA-AGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
55765477 TGCCGATGGTGCCCGAGGCT
65 TGCCGATGGTGCCCGAGGCT
* * ** * * * *
55765497 CCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTT
1 CCCGCACA-CCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
55765562 TGCCGATGGTGTCCGGGGCT
65 TGCCGATGGTGCCCGAGGCT
* * *
55765582 CCTGCACATCCTAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
1 CCCGCACA-CCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
55765644 TGCTACCGGA
Statistics
Matches: 766, Mismatches: 126, Indels: 47
0.82 0.13 0.05
Matches are distributed among these distances:
84 37 0.05
85 496 0.65
86 227 0.30
87 6 0.01
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (84 bp):
CCCGCACACCAAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
GCCGATGGTGCCCGAGGCT
Found at i:55764886 original size:128 final size:127
Alignment explanation
Indices: 55764657--55765630 Score: 815
Period size: 128 Copynumber: 7.6 Consensus size: 127
55764647 CACATCCCAG
** * * *
55764657 GCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGTTGCCGATGGTGT
1 GCACCAAGGTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGC
* * * *
55764721 CCGAGGCTCCCGCACATCCTAGCCACCGA-GGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCG
64 CCGAGGCTCCCGCACATCCAAG-CACCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCA
55764784 A
127 A
* * *
55764785 GCCACCAAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCGAGGTGCCGATGGTGGC
1 G-CACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* ** *** *
55764850 CGAGGCCCCCGCACGA-CCAAGGGCCTATTTTACCGATGGTGCCCGAGGCTCCCGCACGACCAA
65 CGAGGCTCCCGCAC-ATCCAAGCACCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
** ** * * *
55764913 GGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGC
1 GCACCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGC
* * * *
55764978 CCGAGGTTCCCGCACATCCAAGCACC-AAGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAA
64 CCGAGGCTCCCGCACATCCAAGCACCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
** * ** * * *
55765041 GGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGT
1 GCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-GTGCCGATGGTGC
* * * *
55765106 CCGAGGCTCCCGCACATCCCAGCACCTAGGG-GCCGATGGCGGCCGAGGCACCCGCACGACCAA
64 CCGAGGCTCCCGCACATCCAAGCACCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
** * * * ** *
55765169 GGGCCTATGG-GCCGATGGCAG-CCGAGGCACCCGCACGACCAAGGGCCTATTTTCTCGATGGTG
1 GCACC-AAGGTGCCGATGG-TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGC-CGATGGTG
** * ** * *
55765232 CCCGAGGCTCCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCA
63 CCCGAGGCTCCCGCAC-ATCCAAGCACCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCA
55765296 A
127 A
** * * * ** *
55765297 GGGCCTAGGTTGCCGATGGTGCCCGAGGTTCTCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGC
1 GCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGC
* ** * ** * *
55765361 TCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCAC-ATCAT
64 CCGAGGCTCCCGCAC-ATCCAAGCACCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-
55765424 A
127 A
* *
55765425 GCACCGAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* * * ** * *
55765490 CGAGGCTCCCGCACATCGAAGCACCGA-GGTGCCGATGGCGCCCGAGGCTCCTTCATGGCCAA
65 CGAGGCTCCCGCACATCCAAGCACCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
** ** * * * * * ** *
55765552 GGGCTTAGTTTGCCGATGGTGTCCGGGGCTCCTGCAC-ATCCTAGCACCAAGGTGCCGATGGTGC
1 GCACCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGC
55765616 CCGAGGCTCCCGCAC
64 CCGAGGCTCCCGCAC
55765631 GACCAAGGGC
Statistics
Matches: 688, Mismatches: 131, Indels: 55
0.79 0.15 0.06
Matches are distributed among these distances:
126 3 0.00
127 164 0.24
128 437 0.64
129 84 0.12
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (127 bp):
GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCC
GAGGCTCCCGCACATCCAAGCACCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
Found at i:55765281 original size:341 final size:342
Alignment explanation
Indices: 55764643--55765643 Score: 1267
Period size: 341 Copynumber: 2.9 Consensus size: 342
55764633 TCTTCTTTAG
* * **
55764643 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-A
1 CCCGCACAT-CCAAGCACCAAGGTGCCGAT-GGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTA
* ** *
55764706 AGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGC
63 GGTTGCCGACAGTGTCCGAGGCTCCCGCACATCCAAGCCACCGAGGTGCCGATGCTGCCCGAGGC
* * * *
55764771 TCCCGCACATCCGAGCCACCAAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCGAG
128 TCCCGCACATCCCAGCCACCAAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGGCCGAG
** *
55764836 GTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATTTTACCGATGGTGCCCGAGGCTC
193 GTGCCGATGGCAGCCGAGGCACCCGCACGACCAAGGGCCTATTTTACCGATGGTGCCCGAGGCTC
55764901 CCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGT
258 CCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGT
55764966 TGCCGATGGTGCCCGAGGTT
323 TGCCGATGGTGCCCGAGGTT
*
55764986 CCCGCACATCCAAGCACCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** * * * *
55765051 TGCCGACAGTGTCCGAGGCTCCCGCACGA-CCAAG-GGCCTAGTTTGCCGATGGTGTCCGAGGCT
66 TGCCGACAGTGTCCGAGGCTCCCGCAC-ATCCAAGCCACCGAG-GTGCCGATGCTGCCCGAGGCT
* *
55765114 CCCGCACATCCCAG-CACCTAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGGCCTATG
129 CCCGCACATCCCAGCCACCAAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGGCCGA-G
55765178 G-GCCGATGGCAGCCGAGGCACCCGCACGACCAAGGGCCTATTTT-CTCGATGGTGCCCGAGGCT
193 GTGCCGATGGCAGCCGAGGCACCCGCACGACCAAGGGCCTATTTTAC-CGATGGTGCCCGAGGCT
55765241 CCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGG
257 CCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGG
55765306 TTGCCGATGGTGCCCGAGGTT
322 TTGCCGATGGTGCCCGAGGTT
*
55765327 CTCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
55765392 TGCCGACAGTGTCCGAGGCTCCCGCACAT-CATAG-CACCGAGGTGCTGATGGTGCCCGAGGCTC
66 TGCCGACAGTGTCCGAGGCTCCCGCACATCCA-AGCCACCGAGGTGCCGATGCTGCCCGAGGCTC
* ** * * * * * * **
55765455 CCGCACGA-CCAAG-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCACCGA
130 CCGCAC-ATCCCAGCCACCAAGG-GGCCGATGGCGGCCGAGGCACCCGCACGA-CCAAGGGCCGA
* ** * * * * * * *
55765517 GGTGCCGATGGC-GCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGC
192 GGTGCCGATGGCAG-CCGAGGCACCCGCACGACCAAGGGCCTATTTTACCGATGGTGCCCGAGGC
* * ** ** * * *
55765581 TCCTGCAC-ATCCTAGCACCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
256 TCCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTA
55765644 TGCTACCGGA
Statistics
Matches: 582, Mismatches: 61, Indels: 33
0.86 0.09 0.05
Matches are distributed among these distances:
340 82 0.14
341 405 0.70
342 85 0.15
343 10 0.02
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (342 bp):
CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGT
TGCCGACAGTGTCCGAGGCTCCCGCACATCCAAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCC
CGCACATCCCAGCCACCAAGGGGCCGATGGCGGCCGAGGCACCCGCACGACCAAGGGCCGAGGTG
CCGATGGCAGCCGAGGCACCCGCACGACCAAGGGCCTATTTTACCGATGGTGCCCGAGGCTCCCG
CACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGC
CGATGGTGCCCGAGGTT
Found at i:55765681 original size:24 final size:24
Alignment explanation
Indices: 55765649--55765702 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
55765639 GCCTATGCTA
* *
55765649 CCGGAACGGTTCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55765673 CCGGGACGGATCGCCGGAGCACCG
1 CCGGGACGGATCGCCGGAGCACCG
55765697 CCGGGA
1 CCGGGA
55765703 ACCTAACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.17, C:0.37, G:0.41, T:0.06
Consensus pattern (24 bp):
CCGGGACGGATCGCCGGAGCACCG
Found at i:55765961 original size:42 final size:42
Alignment explanation
Indices: 55765912--55766247 Score: 319
Period size: 42 Copynumber: 7.9 Consensus size: 42
55765902 ACTTTAGCTT
* * *
55765912 TGGTGCTCAAGGCTCCCGCTCATCCATGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
55765954 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
** * *
55765996 TGGTGCTCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCGGA
1 TGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGA
** *
55766039 CAGTG-TCCGAGGCTCCCGCACAT-CATAGCACCGAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGA
* * ** *
55766081 TGGT-CTCCGAGGCTTCC-CACAACCAAG-GGCATAGTTTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCA-AG-GTGCCGA
* *
55766123 TGGTG-TCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGA
1 TGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* * *
55766165 TGGTGCTCGAGGCTCCCGTACATCCAAGCATCAAGGTTACCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
55766208 TGGTG-TCTGAGGCTCCCACACATCCGAGCCACCAAGGTGC
1 TGGTGCTC-GAGGCTCCCGCACATCCAAG-CACCAAGGTGC
55766248 TGGAGGCTGT
Statistics
Matches: 240, Mismatches: 38, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
40 1 0.00
41 8 0.03
42 152 0.63
43 70 0.29
44 9 0.04
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.18
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:55766154 original size:84 final size:85
Alignment explanation
Indices: 55765948--55766247 Score: 353
Period size: 85 Copynumber: 3.5 Consensus size: 85
55765938 TGCACCAAGG
*
55765948 TGCCGATGGTG-CTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCC
1 TGCCGATGGTGTC-CGAGGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCTCC
* *
55766012 CGCACGACCAAGGGCCTAGGT
65 CGCACAACCAAGGGCATAGGT
* ** * *
55766033 TGCGGACAGTGTCCGAGGCTCCCGCACAT-CATAGCACCGAGGTGCCGATGGT-CTCCGAGGCTT
1 TGCCGATGGTGTCCGAGGCTCCCGCACATCCAT-GCACCAAGGTGCCGATGGTGCT-CGAGGCTC
*
55766096 CC-CACAACCAAGGGCATAGTT
64 CCGCACAACCAAGGGCATAGGT
*
55766117 TGCCGATGGTGTCCGATGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCC
1 TGCCGATGGTGTCCGAGGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCC
* *
55766182 GTACATCCAA--GCATCAAGGT
66 GCACAACCAAGGGCAT--AGGT
* * *
55766202 TACCGATGGTGTCTGAGGCTCCCACACATCCGA-GCCACCAAGGTGC
1 TGCCGATGGTGTCCGAGGCTCCCGCACATCC-ATG-CACCAAGGTGC
55766248 TGGAGGCTGT
Statistics
Matches: 183, Mismatches: 22, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
83 4 0.02
84 72 0.39
85 94 0.51
86 13 0.07
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.18
Consensus pattern (85 bp):
TGCCGATGGTGTCCGAGGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCTCGAGGCTCCC
GCACAACCAAGGGCATAGGT
Found at i:55772086 original size:43 final size:43
Alignment explanation
Indices: 55772019--55772180 Score: 193
Period size: 43 Copynumber: 3.8 Consensus size: 43
55772009 TCTTCTTTAG
* * *
55772019 CCCGCACATCCCAGGCACCAAGGTGCCGATGGTGTCCGAGGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
* * *
55772062 CCCGCACATCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
* * *
55772105 CCCGCACATCCGAGCCACCAAGGTGCCGATGGTGGCCGAGTCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
** *
55772148 CCCGCACGA-CCAAG-GGCCGAGGTGCCGATGGTG
1 CCCGCAC-ATCCAAGCCACCAAGGTGCCGATGGTG
55772181 GCCGGTGAAA
Statistics
Matches: 104, Mismatches: 14, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
42 16 0.15
43 87 0.84
44 1 0.01
ACGTcount: A:0.18, C:0.38, G:0.31, T:0.13
Consensus pattern (43 bp):
CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
Found at i:55772402 original size:43 final size:43
Alignment explanation
Indices: 55772339--55772929 Score: 592
Period size: 43 Copynumber: 13.9 Consensus size: 43
55772329 ACCAAGGTGT
*
55772339 CGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
** * *
55772382 CGACAGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * ** *
55772425 CGATGGTGTCCGAGGCTCCCGCAC-ATCCCAGCACCTAGG-GGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
* * * * *
55772467 CGATGGCGGCCGAGGCACCCGCACGACCAAGGGCCTA-TTTTC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
55772509 TCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGC
1 -CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
55772553 CGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* ** *
55772596 CGATGGTGCCCGAGGTTCCCGCAC-ATCCAAGCACCAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
*
55772638 CGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
** * * ** *
55772681 CGACAGTGTCCGAGGCTCCCGCAC-ATCATAGCACCGAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCA-AGGGCCTAGGTTGC
*
55772723 TGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * ** *
55772766 CGATGGTGCCCGAGCCTCCCGCAC-ATCGAAGCACCGAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
* ** * * * *
55772808 CGATGGCGCCCGAGGCTCCTTCATGGCCAAGGGCTTAGTTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * ** *
55772851 CGATGGTGTCCGGGGCTCCTGCAC-ATCCTAGCACCAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
55772893 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
55772930 TGCTACCGGA
Statistics
Matches: 438, Mismatches: 94, Indels: 33
0.78 0.17 0.06
Matches are distributed among these distances:
42 163 0.37
43 271 0.62
44 4 0.01
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (43 bp):
CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
Done.