Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55868233
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 983842 characters in sequence are not A, C, G, or T
File 25 of 187
Found at i:8139941 original size:2 final size:2
Alignment explanation
Indices: 8139895--8139930 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
8139885 TTTTTAACAT
8139895 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8139931 CCTTTTATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8140937 original size:69 final size:69
Alignment explanation
Indices: 8140857--8140996 Score: 280
Period size: 69 Copynumber: 2.0 Consensus size: 69
8140847 CTTTTGTTAA
8140857 TTATGTATATTCATATTTGAATTTTTGTGTATTCAAATATCCGACATAATTTAAAATTTGTTAGG
1 TTATGTATATTCATATTTGAATTTTTGTGTATTCAAATATCCGACATAATTTAAAATTTGTTAGG
8140922 AATT
66 AATT
8140926 TTATGTATATTCATATTTGAATTTTTGTGTATTCAAATATCCGACATAATTTAAAATTTGTTAGG
1 TTATGTATATTCATATTTGAATTTTTGTGTATTCAAATATCCGACATAATTTAAAATTTGTTAGG
8140991 AATT
66 AATT
8140995 TT
1 TT
8140997 TAGGGTTAAG
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 71 1.00
ACGTcount: A:0.33, C:0.07, G:0.11, T:0.49
Consensus pattern (69 bp):
TTATGTATATTCATATTTGAATTTTTGTGTATTCAAATATCCGACATAATTTAAAATTTGTTAGG
AATT
Found at i:8144486 original size:37 final size:37
Alignment explanation
Indices: 8144431--8144521 Score: 110
Period size: 37 Copynumber: 2.5 Consensus size: 37
8144421 ACCGAAATGC
* *
8144431 TATGCCCGAAGGCCAAAACAATATCACACCAAAGTGA
1 TATGCCCAAAGGCTAAAACAATATCACACCAAAGTGA
* * * *
8144468 TATGCCCAAAGGCTAAAACAGTATCACATCGAAGTGT
1 TATGCCCAAAGGCTAAAACAATATCACACCAAAGTGA
* *
8144505 TACGCCCAAAAGCTAAA
1 TATGCCCAAAGGCTAAA
8144522 CCATGGTCGA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.42, C:0.25, G:0.16, T:0.16
Consensus pattern (37 bp):
TATGCCCAAAGGCTAAAACAATATCACACCAAAGTGA
Found at i:8149675 original size:48 final size:48
Alignment explanation
Indices: 8149615--8149711 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
8149605 TTGGTCCTTT
8149615 CACCAAAAATTCACTATTTTCACCTAGAAATCAAAAGAATTTCCATAG
1 CACCAAAAATTCACTATTTTCACCTAGAAATCAAAAGAATTTCCATAG
8149663 CACCAAAAATTCACTATTTTCACCTAGAAATCAAAAGAATTTCCATAG
1 CACCAAAAATTCACTATTTTCACCTAGAAATCAAAAGAATTTCCATAG
8149711 C
1 C
8149712 TTCGAAGAGA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.43, C:0.24, G:0.06, T:0.27
Consensus pattern (48 bp):
CACCAAAAATTCACTATTTTCACCTAGAAATCAAAAGAATTTCCATAG
Found at i:8162672 original size:9 final size:9
Alignment explanation
Indices: 8162658--8162694 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
8162648 TAAAAAACAT
8162658 TTAAATATA
1 TTAAATATA
8162667 TTAAATATA
1 TTAAATATA
*
8162676 TTAAATAATT
1 TTAAAT-ATA
8162686 TTAAATATA
1 TTAAATATA
8162695 AAATATTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 17 0.68
10 8 0.32
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (9 bp):
TTAAATATA
Found at i:8162691 original size:19 final size:18
Alignment explanation
Indices: 8162658--8162694 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
8162648 TAAAAAACAT
8162658 TTAAATATATTAAATATA
1 TTAAATATATTAAATATA
*
8162676 TTAAATAATTTTAAATATA
1 TTAAAT-ATATTAAATATA
8162695 AAATATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TTAAATATATTAAATATA
Found at i:8176569 original size:93 final size:93
Alignment explanation
Indices: 8176410--8176794 Score: 405
Period size: 93 Copynumber: 4.1 Consensus size: 93
8176400 ACATCACCTA
* *
8176410 CTATTAAACTTAGCGAGCAGTTTACCTTTC-GAGGTGTCTGTTTTATAACTTGTGAATTTTGCTA
1 CTATTAAACTTAGCGAGCAGTTTACCTCTCGGA-GTGTCTGCTTTATAACTTGTGAATTTTGCTA
*
8176474 AACGCCTTAAGTGGCTAGTAGTTCATCTG
65 AACGCCTTAAGAGGCTAGTAGTTCATCTG
* * * *
8176503 CTATTAAACATAGTGAGTAGTTTATCTCTCGGAGTGTCTGCTTTATAACTTGTGAATTTTGCTAA
1 CTATTAAACTTAGCGAGCAGTTTACCTCTCGGAGTGTCTGCTTTATAACTTGTGAATTTTGCTAA
* *
8176568 ACGTCTTAAAAGGCTAGTAGTTCATCTG
66 ACGCCTTAAGAGGCTAGTAGTTCATCTG
** * * * * * *
8176596 CTAGCAAACTTAGTGAGTAGTTTACCTCT-TGAGATGTTTGCTTTATAACTTATGAATTTTTCTA
1 CTATTAAACTTAGCGAGCAGTTTACCTCTCGGAG-TGTCTGCTTTATAACTTGTGAATTTTGCTA
** * * * * *
8176660 AGTGCTTTAAGAGGCTAGCAATTTATCTA
65 AACGCCTTAAGAGGCTAGTAGTTCATCTG
* * * * * *
8176689 CTATTAAACTTAGCGACCAATTTACCTCTTGGGGTGTTTGCTTTATAACTTGTGAATTTTTCTAA
1 CTATTAAACTTAGCGAGCAGTTTACCTCTCGGAGTGTCTGCTTTATAACTTGTGAATTTTGCTAA
* * ** * * *
8176754 ATGCCTTAAAAGTTTAGCAATTCATTTG
66 ACGCCTTAAGAGGCTAGTAGTTCATCTG
8176782 CTATTAAACTTAG
1 CTATTAAACTTAG
8176795 TCACATGATG
Statistics
Matches: 246, Mismatches: 43, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
92 3 0.01
93 239 0.97
94 4 0.02
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.40
Consensus pattern (93 bp):
CTATTAAACTTAGCGAGCAGTTTACCTCTCGGAGTGTCTGCTTTATAACTTGTGAATTTTGCTAA
ACGCCTTAAGAGGCTAGTAGTTCATCTG
Found at i:8176793 original size:186 final size:186
Alignment explanation
Indices: 8176410--8176795 Score: 450
Period size: 186 Copynumber: 2.1 Consensus size: 186
8176400 ACATCACCTA
* * * *
8176410 CTATTAAACTTAGCGAGCAGTTTACCTTTCGAGGTGTCTGTTTTATAACTTGTGAATTTTGCTAA
1 CTATTAAACTTAGTGAGCAGTTTACCTTTCGAGATGTCTGCTTTATAACTTATGAATTTTGCTAA
* * * * * ** * *
8176475 ACGCCTTAAGTGGCTAGTAGTTCATCTGCTATTAAACATAGTGAGTAGTTTATCTCTCGGAGTGT
66 ACGCCTTAAGAGGCTAGCAATTCATCTACTATTAAACATAGCGACCAATTTACCTCTCGGAGTGT
* * *
8176540 CTGCTTTATAACTTGTGAATTTTGCTAAACGTCTTAAAAGGCTAGTAGTTCATCTG
131 CTGCTTTATAACTTGTGAATTTTGCTAAACGCCTTAAAAGGCTAGCAATTCATCTG
** * * *
8176596 CTAGCAAACTTAGTGAGTAGTTTACCTCTT-GAGATGTTTGCTTTATAACTTATGAATTTTTCTA
1 CTATTAAACTTAGTGAGCAGTTTACCT-TTCGAGATGTCTGCTTTATAACTTATGAATTTTGCTA
** * * * * *
8176660 AGTGCTTTAAGAGGCTAGCAATTTATCTACTATTAAACTTAGCGACCAATTTACCTCTTGGGGTG
65 AACGCCTTAAGAGGCTAGCAATTCATCTACTATTAAACATAGCGACCAATTTACCTCTCGGAGTG
* * * ** *
8176725 TTTGCTTTATAACTTGTGAATTTTTCTAAATGCCTTAAAAGTTTAGCAATTCATTTG
130 TCTGCTTTATAACTTGTGAATTTTGCTAAACGCCTTAAAAGGCTAGCAATTCATCTG
8176782 CTATTAAACTTAGT
1 CTATTAAACTTAGT
8176796 CACATGATGG
Statistics
Matches: 163, Mismatches: 36, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
186 161 0.99
187 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.40
Consensus pattern (186 bp):
CTATTAAACTTAGTGAGCAGTTTACCTTTCGAGATGTCTGCTTTATAACTTATGAATTTTGCTAA
ACGCCTTAAGAGGCTAGCAATTCATCTACTATTAAACATAGCGACCAATTTACCTCTCGGAGTGT
CTGCTTTATAACTTGTGAATTTTGCTAAACGCCTTAAAAGGCTAGCAATTCATCTG
Found at i:8178768 original size:31 final size:31
Alignment explanation
Indices: 8178675--8178793 Score: 104
Period size: 31 Copynumber: 3.9 Consensus size: 31
8178665 CTTAATTTGA
*
8178675 TCAATTGTAGCCCTTGGACTTTTAAAATTGG
1 TCAATTTTAGCCCTTGGACTTTTAAAATTGG
* * *
8178706 TCAATTTTAATCACTAT--AC--TT-AATTTGG
1 TCAATTTT-AGCCCT-TGGACTTTTAAAATTGG
*
8178734 TCAATTTTGGCCCTTGGACTTTTAAAATTGG
1 TCAATTTTAGCCCTTGGACTTTTAAAATTGG
* ** *
8178765 TCAATTTTAGTCCTTATACTTTTCAAATT
1 TCAATTTTAGCCCTTGGACTTTTAAAATT
8178794 TTAAAATTTT
Statistics
Matches: 68, Mismatches: 13, Indels: 14
0.72 0.14 0.15
Matches are distributed among these distances:
26 1 0.01
27 3 0.04
28 16 0.24
29 2 0.03
30 2 0.03
31 39 0.57
32 4 0.06
33 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.45
Consensus pattern (31 bp):
TCAATTTTAGCCCTTGGACTTTTAAAATTGG
Found at i:8178783 original size:59 final size:59
Alignment explanation
Indices: 8178652--8178785 Score: 216
Period size: 59 Copynumber: 2.3 Consensus size: 59
8178642 AAGTTGTGGA
8178652 TTTAGTCCTTATACTTAATTTGATCAATTGTAGCCCTTGGACTTTTAAAATTGGTCAAT
1 TTTAGTCCTTATACTTAATTTGATCAATTGTAGCCCTTGGACTTTTAAAATTGGTCAAT
* * * *
8178711 TTTAATCAC-TATACTTAATTTGGTCAATTTTGGCCCTTGGACTTTTAAAATTGGTCAAT
1 TTTAGTC-CTTATACTTAATTTGATCAATTGTAGCCCTTGGACTTTTAAAATTGGTCAAT
8178770 TTTAGTCCTTATACTT
1 TTTAGTCCTTATACTT
8178786 TTCAAATTTT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
58 1 0.01
59 66 0.97
60 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.46
Consensus pattern (59 bp):
TTTAGTCCTTATACTTAATTTGATCAATTGTAGCCCTTGGACTTTTAAAATTGGTCAAT
Found at i:8184314 original size:106 final size:105
Alignment explanation
Indices: 8184129--8184324 Score: 252
Period size: 106 Copynumber: 1.8 Consensus size: 105
8184119 TCATGGAATT
* ** *
8184129 TAGGTAAAAAGATGCCTTTCTGGACATTTATTAAATAATTTGTGTTTATTACCATGTAACTTTAT
1 TAGGTAAAAAGATGCCTTTCTGGAAATTTATTAAATAA-TTGCATTTATTACCATGAAACTTTAT
* *
8184194 AAAACCATCATAATGGTTATTATTTCCCCCCTTCTCCGCTG
65 AAAACCATCATAATGATGATTATTTCCCCCCTTCTCCGCTG
* * *
8184235 TAGGT-AAAGGATGCCTTTCTGGAAATTTATTAAATGA-TGCATTTATTGCCTGTATGAAACTTT
1 TAGGTAAAAAGATGCCTTTCTGGAAATTTATTAAATAATTGCATTTATTACC---ATGAAACTTT
*
8184298 ATAAAATCATCATAATGATGATTATTT
63 ATAAAACCATCATAATGATGATTATTT
8184325 TCCTGTTCAC
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
103 10 0.13
105 29 0.38
106 38 0.49
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.40
Consensus pattern (105 bp):
TAGGTAAAAAGATGCCTTTCTGGAAATTTATTAAATAATTGCATTTATTACCATGAAACTTTATA
AAACCATCATAATGATGATTATTTCCCCCCTTCTCCGCTG
Found at i:8204774 original size:21 final size:22
Alignment explanation
Indices: 8204728--8204777 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
8204718 ACGTCTCAAC
8204728 TTTATTATTTTAACTAAAGACA
1 TTTATTATTTTAACTAAAGACA
* * *
8204750 -TTATTATTTTTA-TAAATATA
1 TTTATTATTTTAACTAAAGACA
8204770 TTTATTAT
1 TTTATTAT
8204778 GTAATTATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (22 bp):
TTTATTATTTTAACTAAAGACA
Found at i:8204898 original size:3 final size:3
Alignment explanation
Indices: 8204892--8204932 Score: 73
Period size: 3 Copynumber: 13.3 Consensus size: 3
8204882 AACAATAATA
8204892 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT T
8204933 TAAGATTTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:8206130 original size:31 final size:31
Alignment explanation
Indices: 8206095--8206155 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
8206085 TTTAGCTAAA
*
8206095 TTTGACATTTAACCTCTT-AAAAAGAGTCAAT
1 TTTGACA-TCAACCTCTTGAAAAAGAGTCAAT
* *
8206126 TTTGACATCAACCTTTTGAAAAATAGTCAA
1 TTTGACATCAACCTCTTGAAAAAGAGTCAA
8206156 CATAATTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 8 0.31
31 18 0.69
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.34
Consensus pattern (31 bp):
TTTGACATCAACCTCTTGAAAAAGAGTCAAT
Found at i:8210131 original size:9 final size:9
Alignment explanation
Indices: 8210114--8210153 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
8210104 ATTTAATTGG
8210114 TAATTAATT
1 TAATTAATT
*
8210123 TAGTTAATT
1 TAATTAATT
8210132 TAATTAATT
1 TAATTAATT
* *
8210141 AAAATAATT
1 TAATTAATT
8210150 TAAT
1 TAAT
8210154 AATATTTATT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (9 bp):
TAATTAATT
Found at i:8214739 original size:17 final size:17
Alignment explanation
Indices: 8214696--8214739 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
8214686 ATAGGATTAA
*
8214696 AAATATGTAAAATATAT
1 AAATATATAAAATATAT
8214713 AAATATTATAAAATA-AT
1 AAATA-TATAAAATATAT
8214730 AATATATATA
1 AA-ATATATA
8214740 CGTATGTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 13 0.54
18 11 0.46
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (17 bp):
AAATATATAAAATATAT
Found at i:8217899 original size:16 final size:15
Alignment explanation
Indices: 8217878--8217907 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
8217868 TTTAAACATT
8217878 TTTATATACTCTATTA
1 TTTATATACT-TATTA
8217894 TTTATATACTTATT
1 TTTATATACTTATT
8217908 GCACATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.30, C:0.10, G:0.00, T:0.60
Consensus pattern (15 bp):
TTTATATACTTATTA
Found at i:8220552 original size:29 final size:31
Alignment explanation
Indices: 8220519--8220583 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 31
8220509 ATACTTCAGA
* *
8220519 TATCACATTAAATATTTT-C-AAAGTATAAG
1 TATCACATTAAACATTTTACTAAAGTACAAG
*
8220548 TATCACATTAGACATTTTACTAAAGTACAAG
1 TATCACATTAAACATTTTACTAAAGTACAAG
8220579 TATCA
1 TATCA
8220584 AATGAACCAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
29 16 0.52
30 1 0.03
31 14 0.45
ACGTcount: A:0.43, C:0.14, G:0.08, T:0.35
Consensus pattern (31 bp):
TATCACATTAAACATTTTACTAAAGTACAAG
Found at i:8237860 original size:19 final size:19
Alignment explanation
Indices: 8237836--8237872 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8237826 GTTAAAGTAT
*
8237836 TTTATTATTATTTTATTAC
1 TTTATTATTATTTAATTAC
8237855 TTTATTATTATTTAATTA
1 TTTATTATTATTTAATTA
8237873 ATAAATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTATTATTATTTAATTAC
Found at i:8243755 original size:33 final size:33
Alignment explanation
Indices: 8243713--8243907 Score: 131
Period size: 33 Copynumber: 5.4 Consensus size: 33
8243703 GTGGATTCAA
*
8243713 CACTTAGCAACCACCAGTGATTCGGGGAATCAG
1 CACTTAGCAACCACCAATGATTCGGGGAATCAG
* * *
8243746 CACTTAGCAACCCCTTTCACATTTAAGATACAATGGG-ATCAG
1 CACTTAGCAACCAC---CA-A--T--GATTC--GGGGAATCAG
* *
8243788 CACTTAGCAACCACCAATGAGTCGGGCAATCAG
1 CACTTAGCAACCACCAATGATTCGGGGAATCAG
* * *
8243821 CACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAG
1 CACTTAGCAA-CCAC--CA-A--T--GATTCGG-GGAATCAG
8243863 CACTTAGCAACCACCAATGATTCGGGGAATCAG
1 CACTTAGCAACCACCAATGATTCGGGGAATCAG
8243896 CACTTAGCAACC
1 CACTTAGCAACC
8243908 CCTTGGGGGA
Statistics
Matches: 125, Mismatches: 17, Indels: 40
0.69 0.09 0.22
Matches are distributed among these distances:
32 2 0.02
33 48 0.38
34 11 0.09
36 6 0.05
37 1 0.01
38 2 0.02
39 6 0.05
41 11 0.09
42 35 0.28
43 3 0.02
ACGTcount: A:0.33, C:0.29, G:0.18, T:0.21
Consensus pattern (33 bp):
CACTTAGCAACCACCAATGATTCGGGGAATCAG
Found at i:8243840 original size:75 final size:75
Alignment explanation
Indices: 8243704--8243909 Score: 322
Period size: 75 Copynumber: 2.7 Consensus size: 75
8243694 CCGTTATCGG
* * * *
8243704 TGGATTCAACACTTAGCAACCACCAGTGATTCGGGGAATCAGCACTTAGCAACCCCTTTCACATT
1 TGGAATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCCTTCACATT
*
8243769 TAAGATACAA
66 TAAAATACAA
* * *
8243779 TGGGATCAGCACTTAGCAACCACCAATGAGTCGGGCAATCAGCACTTAGCAACCCCCTTCACATT
1 TGGAATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCCTTCACATT
**
8243844 TAAAATACGG
66 TAAAATACAA
8243854 TGGAATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCC
1 TGGAATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCC
8243910 TTGGGGGAAT
Statistics
Matches: 118, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
75 118 1.00
ACGTcount: A:0.33, C:0.29, G:0.18, T:0.21
Consensus pattern (75 bp):
TGGAATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCCTTCACATT
TAAAATACAA
Found at i:8246086 original size:46 final size:46
Alignment explanation
Indices: 8246008--8246146 Score: 233
Period size: 46 Copynumber: 3.0 Consensus size: 46
8245998 ACATTGCTAT
* * *
8246008 AACTCAGTATGGTTTTCCTCACGGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
*
8246054 AACTCAATATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
*
8246100 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACGTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
8246146 A
1 A
8246147 TTTTGCCATG
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 87 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.33
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
Found at i:8247418 original size:16 final size:17
Alignment explanation
Indices: 8247372--8247419 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
8247362 AAATTCTTTT
8247372 TAAATCACAAAATTCAA
1 TAAATCACAAAATTCAA
*
8247389 TAAATCACAAAATTCAC
1 TAAATCACAAAATTCAA
*
8247406 TAATTCA-AAAATTC
1 TAAATCACAAAATTC
8247420 TTCTAAATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 7 0.24
17 22 0.76
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (17 bp):
TAAATCACAAAATTCAA
Found at i:8254087 original size:33 final size:33
Alignment explanation
Indices: 8254045--8254168 Score: 113
Period size: 33 Copynumber: 3.5 Consensus size: 33
8254035 ATTGGTGGAT
*
8254045 TCAGCACTTAGCAACCACCAGTGATTCGAGGAA
1 TCAGCACTTAGCAACCACCAATGATTCGAGGAA
* * * *
8254078 TCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGGA
1 TCAGCACTTAGCAACCAC---CA-A--T--GATTC-GAGGAA
*
8254120 TCAGCACTTAGCAACCACCAATGAGTCGAGGAA
1 TCAGCACTTAGCAACCACCAATGATTCGAGGAA
8254153 TCAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
8254169 CCATTCACAT
Statistics
Matches: 72, Mismatches: 10, Indels: 18
0.72 0.10 0.18
Matches are distributed among these distances:
33 37 0.51
34 3 0.04
36 3 0.04
38 1 0.01
39 3 0.04
41 4 0.06
42 21 0.29
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.20
Consensus pattern (33 bp):
TCAGCACTTAGCAACCACCAATGATTCGAGGAA
Found at i:8254161 original size:75 final size:75
Alignment explanation
Indices: 8254038--8254245 Score: 317
Period size: 75 Copynumber: 2.8 Consensus size: 75
8254028 GTCCGTTATT
* * *
8254038 GGTGGATTCAGCACTTAGCAACCACCAGTGATTCGAGGAATCAGCACTTAGCAACCCCTTTCACA
1 GGTGGAATCAGCACTTAGCAACCACCAATGATTCGAGGAATCAGCACTTAGCAACCCCATTCACA
*
8254103 TTTAAGATAC
66 TTTAAAATAC
* *
8254113 GGTGGGATCAGCACTTAGCAACCACCAATGAGTCGAGGAATCAGCACTTAGCAACCCCATTCACA
1 GGTGGAATCAGCACTTAGCAACCACCAATGATTCGAGGAATCAGCACTTAGCAACCCCATTCACA
8254178 TTTAAAATAC
66 TTTAAAATAC
* * * * *
8254188 GGTGGAATCAACACTTAGCAACCACCAATAATTCGGGGAATCAACACTTAGCTACCCC
1 GGTGGAATCAGCACTTAGCAACCACCAATGATTCGAGGAATCAGCACTTAGCAACCCC
8254246 CTTTATATTC
Statistics
Matches: 120, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
75 120 1.00
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.21
Consensus pattern (75 bp):
GGTGGAATCAGCACTTAGCAACCACCAATGATTCGAGGAATCAGCACTTAGCAACCCCATTCACA
TTTAAAATAC
Found at i:8258518 original size:40 final size:41
Alignment explanation
Indices: 8258452--8258540 Score: 112
Period size: 40 Copynumber: 2.2 Consensus size: 41
8258442 CGTTAATGAC
8258452 TTTAATATATAAATTTAATATTTTTTTAA-TATTAATATAAA
1 TTTAATATATAAATTTAATATTTTTTTAACTATT-ATATAAA
* *
8258493 TTTAATATCT-AATTTCAATA-TTTTTTAACTATTATTTAAA
1 TTTAATATATAAATTT-AATATTTTTTTAACTATTATATAAA
*
8258533 GTTAATAT
1 TTTAATAT
8258541 TATTTTATTA
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
40 26 0.60
41 17 0.40
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (41 bp):
TTTAATATATAAATTTAATATTTTTTTAACTATTATATAAA
Found at i:8266636 original size:12 final size:12
Alignment explanation
Indices: 8266619--8266651 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
8266609 CAACCCGTCC
8266619 ATATTAATTTTT
1 ATATTAATTTTT
8266631 ATATT-ATTTTT
1 ATATTAATTTTT
8266642 ATA-TAATTTT
1 ATATTAATTTT
8266652 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:8266862 original size:22 final size:22
Alignment explanation
Indices: 8266837--8266879 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
8266827 TATCCAAACA
8266837 ATAACAATAAAAT-AGTAGCAAC
1 ATAACAATAAAATGA-TAGCAAC
* *
8266859 ATAATAGTAAAATGATAGCAA
1 ATAACAATAAAATGATAGCAA
8266880 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATGATAGCAAC
Found at i:8271578 original size:16 final size:17
Alignment explanation
Indices: 8271557--8271588 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8271547 AAATATGCAA
8271557 TCACATAA-TTCATATT
1 TCACATAACTTCATATT
8271573 TCACATAACTTCATAT
1 TCACATAACTTCATAT
8271589 CATCAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.22, G:0.00, T:0.41
Consensus pattern (17 bp):
TCACATAACTTCATATT
Found at i:8271818 original size:43 final size:42
Alignment explanation
Indices: 8271752--8271870 Score: 134
Period size: 41 Copynumber: 2.8 Consensus size: 42
8271742 TTGTACAATG
* *
8271752 CCAACGTCCCAGAC-GTGGTCTTACATGTAATCACATATCGATA
1 CCAATGTCCCAGACAG-GGTCTTACACGTAATCACATA-CGATA
* * * *
8271795 CGACTGTCCCAGACAGGGTCTTACACG-AATCAAATACGATG
1 CCAATGTCCCAGACAGGGTCTTACACGTAATCACATACGATA
* *
8271836 CCAATGTCCCAGACATGGTCTTACACGTAAACACA
1 CCAATGTCCCAGACAGGGTCTTACACGTAATCACA
8271871 AGTAGATGCC
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
41 28 0.44
42 13 0.21
43 21 0.33
44 1 0.02
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.22
Consensus pattern (42 bp):
CCAATGTCCCAGACAGGGTCTTACACGTAATCACATACGATA
Found at i:8271898 original size:43 final size:42
Alignment explanation
Indices: 8271749--8271905 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 42
8271739 GACTTGTACA
* *
8271749 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACA-ATAG
* *
8271792 AT-ACGACTGTCCCAGACAG-GGTCTTACACG-AATCA-AATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCACAATA-G
* * *
8271833 ATGCCAATGTCCCAGACATGGTCTTACACGTAAACACAAGTAG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACAA-TAG
* *
8271876 ATGCCGACGTCCCAAACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
8271906 ATAACATATA
Statistics
Matches: 93, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
40 2 0.02
41 24 0.26
42 14 0.15
43 50 0.54
44 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.22
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACAATAG
Found at i:8271899 original size:84 final size:84
Alignment explanation
Indices: 8271749--8271906 Score: 205
Period size: 84 Copynumber: 1.9 Consensus size: 84
8271739 GACTTGTACA
* * * * *
8271749 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATACGACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAACACATATAGATACGACTGTCCCAAACAGGGT
8271814 CTTACACGAATCAAATACG
66 CTTACACGAATCAAATACG
* *
8271833 ATGCCAATGTCCCAGACATGGTCTTACACGTAAACACA-AGTAGATGCCGAC-GTCCCAAAC-GT
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAACACATA-TAGAT-ACGACTGTCCCAAACAG-
8271895 GGTCTTACACGA
63 GGTCTTACACGA
8271907 TAACATATAT
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
83 2 0.03
84 58 0.91
85 4 0.06
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.22
Consensus pattern (84 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAACACATATAGATACGACTGTCCCAAACAGGGT
CTTACACGAATCAAATACG
Found at i:8284265 original size:18 final size:18
Alignment explanation
Indices: 8284238--8284277 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
8284228 GCGTGCGTGG
8284238 CTCTTCATTTATTTC-TT
1 CTCTTCATTTATTTCATT
*
8284255 CTCTGTCATTTTTTTCATT
1 CTCT-TCATTTATTTCATT
8284274 CTCT
1 CTCT
8284278 CTTTCTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 4 0.20
18 10 0.50
19 6 0.30
ACGTcount: A:0.10, C:0.25, G:0.03, T:0.62
Consensus pattern (18 bp):
CTCTTCATTTATTTCATT
Found at i:8286217 original size:73 final size:73
Alignment explanation
Indices: 8286097--8286243 Score: 240
Period size: 73 Copynumber: 2.0 Consensus size: 73
8286087 TAGGATCATT
* *
8286097 AGAATAATATGGTTTTCACATGTTTAAGAAATATCTTATACGAAATTGGAGTTGACCATTAGACA
1 AGAATAATATGATTTTCACAAGTTTAAGAAATATCTTATACGAAATTGGAGTTGACCATTAGACA
8286162 CGACGAAG
66 CGACGAAG
* * *
8286170 AGAATAATATGATTTTCACAAGTTTAAGAAATATCTTATGCGGAATTGGAGTTGACTATTAGACA
1 AGAATAATATGATTTTCACAAGTTTAAGAAATATCTTATACGAAATTGGAGTTGACCATTAGACA
*
8286235 TGACGAAG
66 CGACGAAG
8286243 A
1 A
8286244 ATGCGAAGAA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
73 68 1.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.31
Consensus pattern (73 bp):
AGAATAATATGATTTTCACAAGTTTAAGAAATATCTTATACGAAATTGGAGTTGACCATTAGACA
CGACGAAG
Found at i:8299726 original size:14 final size:14
Alignment explanation
Indices: 8299707--8299734 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8299697 TGTTGTCTTC
8299707 TGAGCAAGCAAAGT
1 TGAGCAAGCAAAGT
8299721 TGAGCAAGCAAAGT
1 TGAGCAAGCAAAGT
8299735 ATAGATTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.29, T:0.14
Consensus pattern (14 bp):
TGAGCAAGCAAAGT
Found at i:8302081 original size:17 final size:16
Alignment explanation
Indices: 8302059--8302093 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
8302049 TTTTTAAAAA
8302059 TAAAAATAAAAATTTAT
1 TAAAAAT-AAAATTTAT
*
8302076 TAAAAATATAATTTAT
1 TAAAAATAAAATTTAT
8302092 TA
1 TA
8302094 TATAAAACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
TAAAAATAAAATTTAT
Found at i:8316469 original size:2 final size:2
Alignment explanation
Indices: 8316457--8316536 Score: 124
Period size: 2 Copynumber: 40.0 Consensus size: 2
8316447 CAATAATAAC
* * * *
8316457 AT AT AT GT AT AT AT AT GT TT GT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8316499 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8316537 GTAAGAATCA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 72 1.00
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (2 bp):
AT
Found at i:8317081 original size:3 final size:3
Alignment explanation
Indices: 8317066--8317155 Score: 53
Period size: 3 Copynumber: 30.7 Consensus size: 3
8317056 CGAATGAGTA
* *
8317066 AAT AAT TAT AAT AAT AAT AA- AGT AAGT AAT AAT AAT AA- ATAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT A-AT AAT
* * * * * * *
8317111 ACT AGT AAT AGT AAT AGT AGT AGT AAT AAT -AT AA- AAA AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8317156 ATAAAATGGG
Statistics
Matches: 69, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
2 6 0.09
3 59 0.86
4 4 0.06
ACGTcount: A:0.60, C:0.01, G:0.08, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8317109 original size:24 final size:26
Alignment explanation
Indices: 8317062--8317126 Score: 66
Period size: 24 Copynumber: 2.7 Consensus size: 26
8317052 GATACGAATG
* *
8317062 AGTAAATAATTATAAT-AATAATAA-
1 AGTAAGTAATAATAATAAATAATAAT
8317086 AGTAAGTAATAATAATAAAT-ATAAT
1 AGTAAGTAATAATAATAAATAATAAT
* *
8317111 ACT-AGTAATAGTAATA
1 AGTAAGTAATAATAATA
8317127 GTAGTAGTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
24 30 0.86
25 5 0.14
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (26 bp):
AGTAAGTAATAATAATAAATAATAAT
Found at i:8320089 original size:14 final size:15
Alignment explanation
Indices: 8320065--8320093 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8320055 TGGGTGCTCG
8320065 AACTCTCTCTTTTCT
1 AACTCTCTCTTTTCT
8320080 AACT-TCTCTTTTCT
1 AACTCTCTCTTTTCT
8320094 TTTTGGTTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.14, C:0.31, G:0.00, T:0.55
Consensus pattern (15 bp):
AACTCTCTCTTTTCT
Found at i:8326275 original size:30 final size:30
Alignment explanation
Indices: 8326184--8326264 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
8326174 GAATGTAATG
* * * * *
8326184 CTCACACAAGCTGACAGTATATCAGGATTG
1 CTCACACAAGCTGACATTATAACTGGGTTA
8326214 CTCACACAAGCTGACATTATAACTGGGTTA
1 CTCACACAAGCTGACATTATAACTGGGTTA
* *
8326244 CTCACACAAGTTGTCATTATA
1 CTCACACAAGCTGACATTATA
8326265 TTGAGGTTAC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.27
Consensus pattern (30 bp):
CTCACACAAGCTGACATTATAACTGGGTTA
Found at i:8326489 original size:113 final size:115
Alignment explanation
Indices: 8326291--8326521 Score: 412
Period size: 113 Copynumber: 2.0 Consensus size: 115
8326281 TGACTAAACC
* *
8326291 TACAATACATTTAACTTGAGAATCTGCAACAAATGCTGGATCTCATAATAACATGTAAATCCGTG
1 TACAATAAATTTAACTTGAGAATCTGCAACAAATGCTGGATCTCATAATAACATGTAAATCCCTG
8326356 ATCAAATACGAGTATAACCCTAATGACATGCCATA-ATATCCTAACC-TT
66 ATCAAATACGAGTATAACCCTAATGACATGCCATACATATCCTAACCATT
*
8326404 TACAATAAATTTAACTTGAGAATCTGCAACAAATGTTGGATCTCATAATAACATGTAAATCCCTG
1 TACAATAAATTTAACTTGAGAATCTGCAACAAATGCTGGATCTCATAATAACATGTAAATCCCTG
*
8326469 ATCAAATATGAGTATAACCCTAATGACATGCCATACATATCCTAACCATT
66 ATCAAATACGAGTATAACCCTAATGACATGCCATACATATCCTAACCATT
8326519 TAC
1 TAC
8326522 TAAGCTCACT
Statistics
Matches: 112, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
113 96 0.86
114 11 0.10
115 5 0.04
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (115 bp):
TACAATAAATTTAACTTGAGAATCTGCAACAAATGCTGGATCTCATAATAACATGTAAATCCCTG
ATCAAATACGAGTATAACCCTAATGACATGCCATACATATCCTAACCATT
Found at i:8329631 original size:40 final size:41
Alignment explanation
Indices: 8329576--8329653 Score: 140
Period size: 40 Copynumber: 1.9 Consensus size: 41
8329566 CCTTCCTTCA
8329576 TTCTCTGTTTCGTTTTGCTCTCTGTTTC-TTTCTTTCTCCC
1 TTCTCTGTTTCGTTTTGCTCTCTGTTTCTTTTCTTTCTCCC
*
8329616 TTCTCTGTTTTGTTTTGCTCTCTGTTTCTTTTCTTTCT
1 TTCTCTGTTTCGTTTTGCTCTCTGTTTCTTTTCTTTCT
8329654 TTCTTTGTCA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
40 27 0.75
41 9 0.25
ACGTcount: A:0.00, C:0.26, G:0.10, T:0.64
Consensus pattern (41 bp):
TTCTCTGTTTCGTTTTGCTCTCTGTTTCTTTTCTTTCTCCC
Found at i:8331713 original size:12 final size:12
Alignment explanation
Indices: 8331698--8331737 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
8331688 GATATCCCAG
8331698 AGAAAATCCAAA
1 AGAAAATCCAAA
* * *
8331710 AGAATATCCCAG
1 AGAAAATCCAAA
8331722 AGAAAATCCAAA
1 AGAAAATCCAAA
8331734 AGAA
1 AGAA
8331738 GAATATCACT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.60, C:0.17, G:0.12, T:0.10
Consensus pattern (12 bp):
AGAAAATCCAAA
Found at i:8331721 original size:24 final size:24
Alignment explanation
Indices: 8331689--8331737 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
8331679 GAGATCGATG
8331689 ATATCCCAGAGAAAATCCAAAAGA
1 ATATCCCAGAGAAAATCCAAAAGA
8331713 ATATCCCAGAGAAAATCCAAAAGA
1 ATATCCCAGAGAAAATCCAAAAGA
8331737 A
1 A
8331738 GAATATCACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.55, C:0.20, G:0.12, T:0.12
Consensus pattern (24 bp):
ATATCCCAGAGAAAATCCAAAAGA
Found at i:8332048 original size:13 final size:13
Alignment explanation
Indices: 8332030--8332057 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8332020 GATAAAAGAG
8332030 CATATAGAATACC
1 CATATAGAATACC
8332043 CATATAGAATACC
1 CATATAGAATACC
8332056 CA
1 CA
8332058 GAAGAAATCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.25, G:0.07, T:0.21
Consensus pattern (13 bp):
CATATAGAATACC
Found at i:8333013 original size:25 final size:23
Alignment explanation
Indices: 8332959--8333128 Score: 119
Period size: 22 Copynumber: 7.4 Consensus size: 23
8332949 CGGGACTATA
*
8332959 CAGAGAGCACAAATGTGCTAA-A-
1 CAGAGAGCAC-AACGTGCTAATAT
* *
8332981 CGGAGAGCACTAACGTGCTAGTGAT
1 CAGAGAGCAC-AACGTGCTAAT-AT
8333006 CAGAGAG-----CGTGCTAATAAT
1 CAGAGAGCACAACGTGCTAAT-AT
* *
8333025 CAGAGAGCACAGATGTGCT-AGA-
1 CAGAGAGCACA-ACGTGCTAATAT
8333047 CAGAGAGCACTAACGTGCTAAATAT
1 CAGAGAGCAC-AACGTGCT-AATAT
*
8333072 CAGAGAGCACAGATGTGCTAA-A-
1 CAGAGAGCACA-ACGTGCTAATAT
8333094 CAGAGAGCACTAACGTGCTAAATAT
1 CAGAGAGCAC-AACGTGCT-AATAT
8333119 CAGAGAGCAC
1 CAGAGAGCAC
8333129 GCTAAACTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 33
0.72 0.08 0.20
Matches are distributed among these distances:
19 17 0.15
22 49 0.42
23 6 0.05
24 8 0.07
25 37 0.32
ACGTcount: A:0.38, C:0.19, G:0.26, T:0.16
Consensus pattern (23 bp):
CAGAGAGCACAACGTGCTAATAT
Found at i:8333018 original size:19 final size:19
Alignment explanation
Indices: 8332994--8333032 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
8332984 AGAGCACTAA
* *
8332994 CGTGCTAGTGATCAGAGAG
1 CGTGCTAATAATCAGAGAG
8333013 CGTGCTAATAATCAGAGAG
1 CGTGCTAATAATCAGAGAG
8333032 C
1 C
8333033 ACAGATGTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.31, C:0.18, G:0.31, T:0.21
Consensus pattern (19 bp):
CGTGCTAATAATCAGAGAG
Found at i:8333076 original size:47 final size:47
Alignment explanation
Indices: 8333013--8333128 Score: 207
Period size: 47 Copynumber: 2.5 Consensus size: 47
8333003 GATCAGAGAG
*
8333013 CGTGCT-AATAATCAGAGAGCACAGATGTGCTAGACAGAGAGCACTAA
1 CGTGCTAAAT-ATCAGAGAGCACAGATGTGCTAAACAGAGAGCACTAA
8333060 CGTGCTAAATATCAGAGAGCACAGATGTGCTAAACAGAGAGCACTAA
1 CGTGCTAAATATCAGAGAGCACAGATGTGCTAAACAGAGAGCACTAA
8333107 CGTGCTAAATATCAGAGAGCAC
1 CGTGCTAAATATCAGAGAGCAC
8333129 GCTAAACTCC
Statistics
Matches: 67, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
47 64 0.96
48 3 0.04
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (47 bp):
CGTGCTAAATATCAGAGAGCACAGATGTGCTAAACAGAGAGCACTAA
Found at i:8334445 original size:17 final size:17
Alignment explanation
Indices: 8334423--8334456 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8334413 GACTAACCCC
*
8334423 TATACATCACTTAGGTA
1 TATACATCACCTAGGTA
*
8334440 TATACATTACCTAGGTA
1 TATACATCACCTAGGTA
8334457 CATGCTACAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (17 bp):
TATACATCACCTAGGTA
Found at i:8338958 original size:15 final size:15
Alignment explanation
Indices: 8338938--8338967 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8338928 TATGGTCTTT
8338938 TATTATTAATATTAA
1 TATTATTAATATTAA
*
8338953 TATTATTATTATTAA
1 TATTATTAATATTAA
8338968 ATAAAGTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TATTATTAATATTAA
Found at i:8339518 original size:12 final size:12
Alignment explanation
Indices: 8339501--8339531 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8339491 GAAGCAGGGG
8339501 AGAAAAAGCGAA
1 AGAAAAAGCGAA
*
8339513 AGAAAAAGGGAA
1 AGAAAAAGCGAA
8339525 AGAAAAA
1 AGAAAAA
8339532 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.71, C:0.03, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGCGAA
Found at i:8339899 original size:22 final size:20
Alignment explanation
Indices: 8339867--8339908 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
8339857 TGGATGAAAT
8339867 TTGAATAGAAA-TAGAGTGAA
1 TTGAATAGAAAGTA-AGTGAA
8339887 TTGAATTAGGAAAGTAAGTGAA
1 TTGAA-TA-GAAAGTAAGTGAA
8339909 CTTAGTTAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 5 0.26
21 2 0.11
22 10 0.53
23 2 0.11
ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26
Consensus pattern (20 bp):
TTGAATAGAAAGTAAGTGAA
Found at i:8344166 original size:58 final size:57
Alignment explanation
Indices: 8344102--8344222 Score: 145
Period size: 57 Copynumber: 2.1 Consensus size: 57
8344092 ATAGAAATGG
* * * *
8344102 TGAAAATGGAGAAATGAGAAACATTT-GAGAATTATTATGGCTTTCTCTAAAATGAAAA
1 TGAAAATGGAGAAAT-AGAAACATTTAGA-AATGAATATAGCTTTCTCAAAAATGAAAA
* * *
8344160 TGAAAATGGAGAAATTGAATCATTTAGAAATGAATGTAGCTTTCTCAAAAATGAAAA
1 TGAAAATGGAGAAATAGAAACATTTAGAAATGAATATAGCTTTCTCAAAAATGAAAA
*
8344217 CGAAAA
1 TGAAAA
8344223 ATGAAAATGA
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
57 37 0.69
58 17 0.31
ACGTcount: A:0.47, C:0.07, G:0.18, T:0.27
Consensus pattern (57 bp):
TGAAAATGGAGAAATAGAAACATTTAGAAATGAATATAGCTTTCTCAAAAATGAAAA
Found at i:8349042 original size:7 final size:6
Alignment explanation
Indices: 8349026--8349065 Score: 64
Period size: 6 Copynumber: 6.7 Consensus size: 6
8349016 ACAAAGACAA
8349026 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA- ATAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT A-AAAAT AAAA
8349066 CCCCTAAGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 1 0.03
6 30 0.94
7 1 0.03
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:8352765 original size:83 final size:83
Alignment explanation
Indices: 8352626--8352791 Score: 323
Period size: 83 Copynumber: 2.0 Consensus size: 83
8352616 GTCTCTAGTA
*
8352626 GTCTGAAAGTTTGTTTCGTGTTGCTTGTTTTGCAATTTTTCTTTTCTTTTCATCTAAGTGTGTGT
1 GTCTGAAAGTTTGTTTCGTGTTGCTTGTTTTGCAATTTTTCTTTTCTTTTCATCTAAGTGTGCGT
8352691 GTATCTCATTTTAACCTT
66 GTATCTCATTTTAACCTT
8352709 GTCTGAAAGTTTGTTTCGTGTTGCTTGTTTTGCAATTTTTCTTTTCTTTTCATCTAAGTGTGCGT
1 GTCTGAAAGTTTGTTTCGTGTTGCTTGTTTTGCAATTTTTCTTTTCTTTTCATCTAAGTGTGCGT
8352774 GTATCTCATTTTAACCTT
66 GTATCTCATTTTAACCTT
8352792 CTTTTTCTTC
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 82 1.00
ACGTcount: A:0.14, C:0.15, G:0.17, T:0.54
Consensus pattern (83 bp):
GTCTGAAAGTTTGTTTCGTGTTGCTTGTTTTGCAATTTTTCTTTTCTTTTCATCTAAGTGTGCGT
GTATCTCATTTTAACCTT
Found at i:8355173 original size:17 final size:14
Alignment explanation
Indices: 8355140--8355166 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8355130 TTTTAGAATT
8355140 AAATATTATTATTA
1 AAATATTATTATTA
8355154 AAATATTATTATT
1 AAATATTATTATT
8355167 TGAAAAAGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
AAATATTATTATTA
Found at i:8355237 original size:23 final size:23
Alignment explanation
Indices: 8355206--8355255 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
8355196 TGCGCAGGCT
* *
8355206 TATTGTATT-TATCTATTACAATA
1 TATTATATTGTATCT-TTAAAATA
*
8355229 TATTATATTGTTTCTTTAAAATA
1 TATTATATTGTATCTTTAAAATA
8355252 TATT
1 TATT
8355256 TAAAAAATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (23 bp):
TATTATATTGTATCTTTAAAATA
Found at i:8362537 original size:31 final size:31
Alignment explanation
Indices: 8362499--8362565 Score: 134
Period size: 31 Copynumber: 2.2 Consensus size: 31
8362489 TGGTGAAGTG
8362499 TCTCTCTTTTTAACTATTTTACTGCATTCTT
1 TCTCTCTTTTTAACTATTTTACTGCATTCTT
8362530 TCTCTCTTTTTAACTATTTTACTGCATTCTT
1 TCTCTCTTTTTAACTATTTTACTGCATTCTT
8362561 TCTCT
1 TCTCT
8362566 ATATGGAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.15, C:0.24, G:0.03, T:0.58
Consensus pattern (31 bp):
TCTCTCTTTTTAACTATTTTACTGCATTCTT
Found at i:8362962 original size:14 final size:14
Alignment explanation
Indices: 8362945--8362974 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8362935 TTTCATCATA
8362945 TACATATATATATG
1 TACATATATATATG
*
8362959 TACATATATGTATG
1 TACATATATATATG
8362973 TA
1 TA
8362975 TGTTTGGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (14 bp):
TACATATATATATG
Found at i:8365623 original size:19 final size:21
Alignment explanation
Indices: 8365601--8365641 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
8365591 TTTACTTGCT
*
8365601 TTTTGTATTT-TTT-ACACAA
1 TTTTATATTTGTTTAACACAA
8365620 TTTTATATTTGTTTAACACAA
1 TTTTATATTTGTTTAACACAA
8365641 T
1 T
8365642 CATTTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 9 0.47
20 3 0.16
21 7 0.37
ACGTcount: A:0.29, C:0.10, G:0.05, T:0.56
Consensus pattern (21 bp):
TTTTATATTTGTTTAACACAA
Found at i:8369450 original size:20 final size:20
Alignment explanation
Indices: 8369427--8369467 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
8369417 AATGGTTCAC
8369427 AAATTTTTGAAAGGTGATGA
1 AAATTTTTGAAAGGTGATGA
8369447 AAATTTTTGAAAGGTGATGA
1 AAATTTTTGAAAGGTGATGA
8369467 A
1 A
8369468 GTAGAAAGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.34
Consensus pattern (20 bp):
AAATTTTTGAAAGGTGATGA
Found at i:8372331 original size:2 final size:2
Alignment explanation
Indices: 8372324--8372349 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8372314 ATGTACGTGC
8372324 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8372350 GTGTGTGTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8376776 original size:23 final size:23
Alignment explanation
Indices: 8376750--8376794 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
8376740 AGCAAACGAA
* *
8376750 TTGGGGAAGAAAAAGAAAGAAAG
1 TTGGGAAAAAAAAAGAAAGAAAG
8376773 TTGGGAAAAAAAAAGAAAGAAA
1 TTGGGAAAAAAAAAGAAAGAAA
8376795 AGGAAAACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.29, T:0.09
Consensus pattern (23 bp):
TTGGGAAAAAAAAAGAAAGAAAG
Found at i:8383851 original size:39 final size:37
Alignment explanation
Indices: 8383756--8383851 Score: 97
Period size: 39 Copynumber: 2.5 Consensus size: 37
8383746 CGAATAGATT
* * *
8383756 CGATGAGGTACTGCGTACCAACTTTCTTCAGCTTTGC
1 CGATGAGGTACTGCGTGCCAACTTTCTTCAACTATGC
**
8383793 CGATGAGACACTG-GATGCCAACTATTGCTTCGAACTAT-C
1 CGATGAGGTACTGCG-TGCCAACT-TT-CTTC-AACTATGC
8383832 CGATGAGGTACTGCGTGCCA
1 CGATGAGGTACTGCGTGCCA
8383852 TACTGGAGTG
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
36 1 0.02
37 18 0.38
38 2 0.04
39 21 0.45
40 5 0.11
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (37 bp):
CGATGAGGTACTGCGTGCCAACTTTCTTCAACTATGC
Found at i:8387609 original size:18 final size:19
Alignment explanation
Indices: 8387576--8387613 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
8387566 AGACTCCAGG
*
8387576 TCTGATTCTTTTCAATCAT
1 TCTGATTCTCTTCAATCAT
8387595 TCTGATT-TCTTCAATCAT
1 TCTGATTCTCTTCAATCAT
8387613 T
1 T
8387614 GCCTGCTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.53
Consensus pattern (19 bp):
TCTGATTCTCTTCAATCAT
Found at i:8400535 original size:22 final size:22
Alignment explanation
Indices: 8400507--8400549 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8400497 TTATTTAATT
*
8400507 ATAATTCAATAAACCTTAAATA
1 ATAATTCAAAAAACCTTAAATA
*
8400529 ATAATTCAAAAAATCTTAAAT
1 ATAATTCAAAAAACCTTAAAT
8400550 TAATTCTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
ATAATTCAAAAAACCTTAAATA
Found at i:8404661 original size:20 final size:20
Alignment explanation
Indices: 8404619--8404669 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
8404609 AAAAAATGAC
* *
8404619 ATTATAATAAATTTAAATTT
1 ATTAAAATAAATTTAAATGT
8404639 ATTAAAATAAATTT-AATAGT
1 ATTAAAATAAATTTAAAT-GT
*
8404659 ATTAGAATAAA
1 ATTAAAATAAA
8404670 AAATTACTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 3 0.11
20 24 0.89
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (20 bp):
ATTAAAATAAATTTAAATGT
Found at i:8409555 original size:30 final size:30
Alignment explanation
Indices: 8409519--8409598 Score: 126
Period size: 30 Copynumber: 2.7 Consensus size: 30
8409509 GACTTGGTCA
8409519 ACAATCAGCAACTACAATTGGGATATTCTT
1 ACAATCAGCAACTACAATTGGGATATTCTT
* *
8409549 ACAATCAGCAACTACGATTGTGATATTCTT
1 ACAATCAGCAACTACAATTGGGATATTCTT
8409579 AC-ATGCAGCAACTACAATTG
1 ACAAT-CAGCAACTACAATTG
8409599 CAAATGTCTC
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
29 2 0.04
30 44 0.96
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (30 bp):
ACAATCAGCAACTACAATTGGGATATTCTT
Found at i:8411170 original size:6 final size:6
Alignment explanation
Indices: 8411159--8411200 Score: 84
Period size: 6 Copynumber: 7.0 Consensus size: 6
8411149 TCAATTAGAA
8411159 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
8411201 TTAAATCATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
CTTTTT
Found at i:8412386 original size:4 final size:4
Alignment explanation
Indices: 8412379--8412411 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
8412369 TAGTTTATAT
8412379 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
8412412 CAGATCTAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:8413489 original size:27 final size:27
Alignment explanation
Indices: 8413458--8413511 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
8413448 AACCAATAGA
*
8413458 AGGATTTATAGTATATTAATATAGAGT
1 AGGATTTATAGTATATTAATACAGAGT
8413485 AGGATTTATAGTATATTAATACAGAGT
1 AGGATTTATAGTATATTAATACAGAGT
8413512 TAATGTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.41, C:0.02, G:0.19, T:0.39
Consensus pattern (27 bp):
AGGATTTATAGTATATTAATACAGAGT
Found at i:8430465 original size:2 final size:2
Alignment explanation
Indices: 8430458--8430490 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8430448 AGATTCACTT
8430458 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8430491 TGAGTATTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8431792 original size:60 final size:60
Alignment explanation
Indices: 8431728--8431841 Score: 156
Period size: 60 Copynumber: 1.9 Consensus size: 60
8431718 ATAAGTGATT
* * * * **
8431728 AAATTGTAACTTTTTAAAGTTTAGTGATCAAATCAGATTATCTTGAAAATATTAGTCACC
1 AAATTATAACTTTTTAAAGTTTAATGATCAAAACAAACCATCTTGAAAATATTAGTCACC
**
8431788 AAATTATATTTTTTTAAAGTTTAATGATCAAAACAAACCATCTTGAAAATATTA
1 AAATTATAACTTTTTAAAGTTTAATGATCAAAACAAACCATCTTGAAAATATTA
8431842 ACGAAAGCCG
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
60 46 1.00
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.39
Consensus pattern (60 bp):
AAATTATAACTTTTTAAAGTTTAATGATCAAAACAAACCATCTTGAAAATATTAGTCACC
Found at i:8443016 original size:19 final size:19
Alignment explanation
Indices: 8443004--8443042 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
8442994 AAAAAGAGAA
8443004 CTTAAAAAGAAAATAAAAC
1 CTTAAAAAGAAAATAAAAC
8443023 CTTAAAAAGAAAATAAAAC
1 CTTAAAAAGAAAATAAAAC
8443042 C
1 C
8443043 ACTAGTTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.67, C:0.13, G:0.05, T:0.15
Consensus pattern (19 bp):
CTTAAAAAGAAAATAAAAC
Found at i:8443555 original size:16 final size:16
Alignment explanation
Indices: 8443517--8443557 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
8443507 AAACTCAGGT
*
8443517 TTTTAGGGTTTGGGTCA
1 TTTT-GGGTTTGGGCCA
8443534 -TTTGGGTTTGGGCCA
1 TTTTGGGTTTGGGCCA
8443549 TTTTGGGTT
1 TTTTGGGTT
8443558 CAAATGATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.07, C:0.07, G:0.37, T:0.49
Consensus pattern (16 bp):
TTTTGGGTTTGGGCCA
Found at i:8451568 original size:16 final size:16
Alignment explanation
Indices: 8451547--8451594 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
8451537 GTTTCTGTTT
8451547 TTTTATT-TATTTATTA
1 TTTTATTCTATTT-TTA
8451563 TTTTATTCTATTTTTA
1 TTTTATTCTATTTTTA
*
8451579 CTTTA-TC-ATTTTTA
1 TTTTATTCTATTTTTA
8451593 TT
1 TT
8451595 AATGAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
14 8 0.28
15 2 0.07
16 14 0.48
17 5 0.17
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTATTCTATTTTTA
Found at i:8468059 original size:12 final size:12
Alignment explanation
Indices: 8468042--8468068 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8468032 TGTTCAGACT
8468042 GCACAAACTGTA
1 GCACAAACTGTA
8468054 GCACAAACTGTA
1 GCACAAACTGTA
8468066 GCA
1 GCA
8468069 GCTTCATCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.26, G:0.19, T:0.15
Consensus pattern (12 bp):
GCACAAACTGTA
Found at i:8473230 original size:2 final size:2
Alignment explanation
Indices: 8473225--8473291 Score: 107
Period size: 2 Copynumber: 33.5 Consensus size: 2
8473215 ATATTTTGTT
* * *
8473225 AG AG AG GG AG AG GG AG AG GG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
8473267 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
8473292 ATAGGAAGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8481496 original size:12 final size:12
Alignment explanation
Indices: 8481479--8481505 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8481469 TGTTCAGACT
8481479 GCACAAACTGTA
1 GCACAAACTGTA
8481491 GCACAAACTGTA
1 GCACAAACTGTA
8481503 GCA
1 GCA
8481506 GCTTCATCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.26, G:0.19, T:0.15
Consensus pattern (12 bp):
GCACAAACTGTA
Found at i:8489437 original size:6 final size:6
Alignment explanation
Indices: 8489428--8489483 Score: 103
Period size: 6 Copynumber: 9.3 Consensus size: 6
8489418 TGCGGTTGTG
*
8489428 GCTCCT GCTCCT GCTCCT GCTCCT GCTTCT GCTCCT GCTCCT GCTCCT
1 GCTCCT GCTCCT GCTCCT GCTCCT GCTCCT GCTCCT GCTCCT GCTCCT
8489476 GCTCCT GC
1 GCTCCT GC
8489484 ACCAGCTCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 48 1.00
ACGTcount: A:0.00, C:0.48, G:0.18, T:0.34
Consensus pattern (6 bp):
GCTCCT
Found at i:8495769 original size:17 final size:18
Alignment explanation
Indices: 8495736--8495768 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
8495726 ATGAATAAAA
8495736 AATAATAATAATTTTTTG
1 AATAATAATAATTTTTTG
8495754 AATAA-AAT-ATTTTTT
1 AATAATAATAATTTTTT
8495769 TTATATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (18 bp):
AATAATAATAATTTTTTG
Found at i:8495916 original size:27 final size:27
Alignment explanation
Indices: 8495852--8495916 Score: 121
Period size: 27 Copynumber: 2.4 Consensus size: 27
8495842 CCTATCAGGT
*
8495852 AGGCGCCAATAAAGGTGCCTCATAGAG
1 AGGCGCCAATGAAGGTGCCTCATAGAG
8495879 AGGCGCCAATGAAGGTGCCTCATAGAG
1 AGGCGCCAATGAAGGTGCCTCATAGAG
8495906 AGGCGCCAATG
1 AGGCGCCAATG
8495917 GTGGCCTTCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.31, C:0.23, G:0.32, T:0.14
Consensus pattern (27 bp):
AGGCGCCAATGAAGGTGCCTCATAGAG
Found at i:8496164 original size:12 final size:12
Alignment explanation
Indices: 8496147--8496172 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8496137 TTTGTGAATT
8496147 TTTTAGAAGATA
1 TTTTAGAAGATA
8496159 TTTTAGAAGATA
1 TTTTAGAAGATA
8496171 TT
1 TT
8496173 GTGAACTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (12 bp):
TTTTAGAAGATA
Found at i:8496268 original size:22 final size:22
Alignment explanation
Indices: 8496241--8496302 Score: 94
Period size: 22 Copynumber: 3.0 Consensus size: 22
8496231 TGGATTAGAA
*
8496241 TTTTGTATGAATATTCTAATTT
1 TTTTGTATGAATATTGTAATTT
8496263 TTTTGTATGAATATTGTAA--T
1 TTTTGTATGAATATTGTAATTT
8496283 TTTT-TATGAATATTGTAATT
1 TTTTGTATGAATATTGTAATT
8496303 ATGTTATAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
19 14 0.38
20 5 0.14
22 18 0.49
ACGTcount: A:0.29, C:0.02, G:0.11, T:0.58
Consensus pattern (22 bp):
TTTTGTATGAATATTGTAATTT
Found at i:8496422 original size:27 final size:26
Alignment explanation
Indices: 8496359--8496478 Score: 132
Period size: 27 Copynumber: 4.9 Consensus size: 26
8496349 ATGAATATAG
8496359 TAATTTTGTATGAATATTGT-A-ATT
1 TAATTTTGTATGAATATTGTAATATT
8496383 T--TTTTGTATGAATATTGTAATATT
1 TAATTTTGTATGAATATTGTAATATT
* *
8496407 ATAATTTTATATGAATATTG-CA-A-T
1 -TAATTTTGTATGAATATTGTAATATT
*
8496431 T--TTTTGTATGAATATTGTAATTTT
1 TAATTTTGTATGAATATTGTAATATT
8496455 GTAATTTTGTATGAATATTGTAAT
1 -TAATTTTGTATGAATATTGTAAT
8496479 GTCGGGATAT
Statistics
Matches: 80, Mismatches: 5, Indels: 19
0.77 0.05 0.18
Matches are distributed among these distances:
21 15 0.19
22 18 0.22
23 2 0.03
24 6 0.08
25 3 0.04
26 1 0.01
27 35 0.44
ACGTcount: A:0.33, C:0.01, G:0.12, T:0.54
Consensus pattern (26 bp):
TAATTTTGTATGAATATTGTAATATT
Found at i:8496435 original size:21 final size:21
Alignment explanation
Indices: 8496411--8496454 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
8496401 AATATTATAA
8496411 TTTTATATGAATATTGCAATT
1 TTTTATATGAATATTGCAATT
* *
8496432 TTTTGTATGAATATTGTAATT
1 TTTTATATGAATATTGCAATT
8496453 TT
1 TT
8496455 GTAATTTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (21 bp):
TTTTATATGAATATTGCAATT
Found at i:8496460 original size:48 final size:49
Alignment explanation
Indices: 8496352--8496531 Score: 199
Period size: 48 Copynumber: 3.7 Consensus size: 49
8496342 ATTTTGTATG
* *
8496352 AATATAGTAATTTTGTATGAATATTGTAATTTTTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGT
* *
8496401 AATATTATAATTTTATATGAATATTGCAA-TTTTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGT
* * * ** *
8496449 AATTTTGTAATTTTGTATGAATATTGTAA--TGTCGGGAT--ATATTGT
1 AATATTGTAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGT
* *
8496494 AATATTGTAATTTTTTGTATGAATATTGTAATTATTTT
1 AATATTGTAA--TTTTGTATGAATATTGCAATTTTTTT
8496532 ATAATTAATT
Statistics
Matches: 110, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
45 16 0.15
47 24 0.22
48 44 0.40
49 26 0.24
ACGTcount: A:0.32, C:0.01, G:0.14, T:0.53
Consensus pattern (49 bp):
AATATTGTAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGT
Found at i:8496478 original size:19 final size:19
Alignment explanation
Indices: 8496239--8496457 Score: 120
Period size: 19 Copynumber: 11.5 Consensus size: 19
8496229 TTTGGATTAG
*
8496239 AATTTTGTATGAATATTCT
1 AATTTTGTATGAATATTGT
8496258 AATTTTTTTGTATGAATATTGT
1 AA---TTTTGTATGAATATTGT
*
8496280 AATTTTTTATGAATATTGT
1 AATTTTGTATGAATATTGT
* *
8496299 AATTATGT-T--ATAAT-T
1 AATTTTGTATGAATATTGT
* * *
8496314 AAATTTGTACTTATAGTTTTGGTTT
1 AATTTTGTA-TGA-A-TATT-G--T
*
8496339 AGTATTTTGTATGAATATAGT
1 A--ATTTTGTATGAATATTGT
8496360 AATTTTGTATGAATATTGT
1 AATTTTGTATGAATATTGT
*
8496379 AATTTT-TTTG--TA-TG-
1 AATTTTGTATGAATATTGT
* *
8496393 AATATTG--T-AATATTAT
1 AATTTTGTATGAATATTGT
* *
8496409 AATTTTATATGAATATTGC
1 AATTTTGTATGAATATTGT
8496428 AATTTTTTGTATGAATATTGT
1 AA--TTTTGTATGAATATTGT
8496449 AATTTTGTA
1 AATTTTGTA
8496458 ATTTTGTATG
Statistics
Matches: 152, Mismatches: 23, Indels: 50
0.68 0.10 0.22
Matches are distributed among these distances:
13 1 0.01
14 7 0.05
15 10 0.07
16 11 0.07
17 1 0.01
18 5 0.03
19 62 0.41
20 1 0.01
21 21 0.14
22 18 0.12
23 1 0.01
24 2 0.01
25 3 0.02
26 2 0.01
27 7 0.05
ACGTcount: A:0.32, C:0.01, G:0.13, T:0.54
Consensus pattern (19 bp):
AATTTTGTATGAATATTGT
Found at i:8496608 original size:60 final size:60
Alignment explanation
Indices: 8496519--8496640 Score: 165
Period size: 60 Copynumber: 2.0 Consensus size: 60
8496509 TGTATGAATA
* * * * *
8496519 TTGTAATTATTTTATAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGT
1 TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
* *
8496579 TTGTAATTA-TTTAAAATTTATTTTATTAGTAATTTAGGATTAAGCTATAAGTTGTTGTGT
1 TTGTAATTATTTTAAAA-TTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
8496639 TT
1 TT
8496641 AGTTTAGTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
59 6 0.11
60 48 0.89
ACGTcount: A:0.30, C:0.01, G:0.14, T:0.55
Consensus pattern (60 bp):
TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
Found at i:8496725 original size:37 final size:37
Alignment explanation
Indices: 8496674--8496754 Score: 153
Period size: 37 Copynumber: 2.2 Consensus size: 37
8496664 CATATAAAGT
8496674 TTATAAAAAAATTAAAAATCATTTTATTAAAAGTTTAA
1 TTAT-AAAAAATTAAAAATCATTTTATTAAAAGTTTAA
8496712 TTATAAAAAATTAAAAATCATTTTATTAAAAGTTTAA
1 TTATAAAAAATTAAAAATCATTTTATTAAAAGTTTAA
8496749 TTATAA
1 TTATAA
8496755 CTGACTTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
37 39 0.91
38 4 0.09
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (37 bp):
TTATAAAAAATTAAAAATCATTTTATTAAAAGTTTAA
Found at i:8496817 original size:16 final size:15
Alignment explanation
Indices: 8496796--8496832 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
8496786 CTCATTTAAT
8496796 TTTTATATAATGTAA
1 TTTTATATAATGTAA
*
8496811 CTTTTATATAATTTAA
1 -TTTTATATAATGTAA
8496827 TTTTAT
1 TTTTAT
8496833 TTGATTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (15 bp):
TTTTATATAATGTAA
Found at i:8503327 original size:6 final size:6
Alignment explanation
Indices: 8503318--8503371 Score: 81
Period size: 6 Copynumber: 9.0 Consensus size: 6
8503308 TGCGGTTGTG
* * *
8503318 GCTCCT GCTCCT GCTTCT GCTCCT GCTCCT GCTGCT GCTGCT GCTCCT
1 GCTCCT GCTCCT GCTCCT GCTCCT GCTCCT GCTCCT GCTCCT GCTCCT
8503366 GCTCCT
1 GCTCCT
8503372 CCACGAGCTC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.00, C:0.44, G:0.20, T:0.35
Consensus pattern (6 bp):
GCTCCT
Found at i:8512259 original size:2 final size:2
Alignment explanation
Indices: 8512254--8512320 Score: 107
Period size: 2 Copynumber: 33.5 Consensus size: 2
8512244 ATATTTTGTT
* * *
8512254 AG AG AG GG AG AG GG AG AG GG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
8512296 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
8512321 ATAGGAAGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8520720 original size:6 final size:6
Alignment explanation
Indices: 8520709--8520743 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
8520699 AGTTTATTTG
* *
8520709 TTTTAT TTTTAT TTTTAT GTTTAT TGTTAT TTTTA
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTA
8520744 GTTGTTTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (6 bp):
TTTTAT
Found at i:8520733 original size:18 final size:17
Alignment explanation
Indices: 8520710--8520755 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
8520700 GTTTATTTGT
8520710 TTTATTTTTATTTTTATG
1 TTTATTTTTATTTTTA-G
*
8520728 TTTATTGTTATTTTTAG
1 TTTATTTTTATTTTTAG
*
8520745 -TTGTTTTTATT
1 TTTATTTTTATT
8520756 GTCACTTTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 9 0.36
17 1 0.04
18 15 0.60
ACGTcount: A:0.15, C:0.00, G:0.09, T:0.76
Consensus pattern (17 bp):
TTTATTTTTATTTTTAG
Found at i:8526725 original size:12 final size:12
Alignment explanation
Indices: 8526708--8526732 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8526698 GGCAACTTGA
8526708 TCTGCTTCATGG
1 TCTGCTTCATGG
8526720 TCTGCTTCATGG
1 TCTGCTTCATGG
8526732 T
1 T
8526733 TTGCATGTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.24, G:0.24, T:0.44
Consensus pattern (12 bp):
TCTGCTTCATGG
Found at i:8537719 original size:21 final size:22
Alignment explanation
Indices: 8537681--8537777 Score: 85
Period size: 21 Copynumber: 4.5 Consensus size: 22
8537671 CCGGCCCATT
* **
8537681 TTTTAATAAATATTAAAAATTTA
1 TTTTAA-AAATATAAAAAAAGTA
8537704 TTTTAAAAAT-TAAAAAAAGTA
1 TTTTAAAAATATAAAAAAAGTA
***
8537725 TTTTAAAAATAT-TTTAAA-T-
1 TTTTAAAAATATAAAAAAAGTA
* *
8537744 TTTAAAAAATTTAAAAAAAGTA
1 TTTTAAAAATATAAAAAAAGTA
8537766 TTTTAAAAATAT
1 TTTTAAAAATAT
8537778 TTTAAAATTA
Statistics
Matches: 57, Mismatches: 13, Indels: 9
0.72 0.16 0.11
Matches are distributed among these distances:
19 10 0.18
20 4 0.07
21 22 0.39
22 15 0.26
23 6 0.11
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
TTTTAAAAATATAAAAAAAGTA
Found at i:8537737 original size:11 final size:11
Alignment explanation
Indices: 8537717--8537784 Score: 65
Period size: 11 Copynumber: 6.4 Consensus size: 11
8537707 TAAAAATTAA
8537717 AAAAAGTATTTT
1 AAAAA-TATTTT
8537729 AAAAATATTTT
1 AAAAATATTTT
8537740 ---AA-ATTTT
1 AAAAATATTTT
*
8537747 AAAAA-ATTTAA
1 AAAAATATTT-T
8537758 AAAAAGTATTTT
1 AAAAA-TATTTT
8537770 AAAAATATTTT
1 AAAAATATTTT
8537781 AAAA
1 AAAA
8537785 TTAAAAAAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 13
0.76 0.03 0.21
Matches are distributed among these distances:
7 5 0.10
8 2 0.04
10 6 0.12
11 21 0.44
12 10 0.21
13 4 0.08
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:8537770 original size:41 final size:41
Alignment explanation
Indices: 8537703--8537794 Score: 152
Period size: 41 Copynumber: 2.3 Consensus size: 41
8537693 TTAAAAATTT
8537703 ATTTT-AAAAA-TTAAAAAAAGTATTTTAAAAATATTTTAA
1 ATTTTAAAAAATTTAAAAAAAGTATTTTAAAAATATTTTAA
8537742 ATTTTAAAAAATTTAAAAAAAGTATTTTAAAAATATTTTAA
1 ATTTTAAAAAATTTAAAAAAAGTATTTTAAAAATATTTTAA
* *
8537783 AATTAAAAAAAT
1 ATTTTAAAAAAT
8537795 AAATATATTT
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 5 0.10
40 5 0.10
41 39 0.80
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (41 bp):
ATTTTAAAAAATTTAAAAAAAGTATTTTAAAAATATTTTAA
Found at i:8538604 original size:2 final size:2
Alignment explanation
Indices: 8538556--8538590 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8538546 ATTAGAACAC
8538556 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8538591 TGAAAACGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8542797 original size:2 final size:2
Alignment explanation
Indices: 8542792--8542822 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8542782 ATATATAAGT
8542792 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8542823 TGCTCAGTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8545279 original size:20 final size:21
Alignment explanation
Indices: 8545254--8545299 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8545244 GAGTAAAAGG
8545254 GGAAAAT-CTAAGTTTTTATA
1 GGAAAATACTAAGTTTTTATA
* **
8545274 GGAAAATATTGGGTTTTTATA
1 GGAAAATACTAAGTTTTTATA
8545295 GGAAA
1 GGAAA
8545300 TGTTGGCTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.39, C:0.02, G:0.22, T:0.37
Consensus pattern (21 bp):
GGAAAATACTAAGTTTTTATA
Found at i:8545300 original size:20 final size:21
Alignment explanation
Indices: 8545265--8545312 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
8545255 GAAAATCTAA
8545265 GTTTTTATAGGAAAATATTGG
1 GTTTTTATAGGAAAATATTGG
*
8545286 GTTTTTATAGG-AAATGTTGG
1 GTTTTTATAGGAAAATATTGG
*
8545306 CTTTTTA
1 GTTTTTA
8545313 CAGGGATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.27, C:0.02, G:0.23, T:0.48
Consensus pattern (21 bp):
GTTTTTATAGGAAAATATTGG
Found at i:8545370 original size:19 final size:20
Alignment explanation
Indices: 8545345--8545403 Score: 66
Period size: 19 Copynumber: 3.0 Consensus size: 20
8545335 CAAGGAATAA
8545345 TCATTTTATTTTTTTTAATT
1 TCATTTTATTTTTTTTAATT
* *
8545365 TC-TTTTGTTTTTTTTAGAAT
1 TCATTTTATTTTTTTTA-ATT
* *
8545385 TCATTTTAATTTTTCTAAT
1 TCATTTTATTTTTTTTAAT
8545404 AAAAATGGGA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
19 13 0.42
20 7 0.23
21 11 0.35
ACGTcount: A:0.20, C:0.07, G:0.03, T:0.69
Consensus pattern (20 bp):
TCATTTTATTTTTTTTAATT
Found at i:8546452 original size:28 final size:28
Alignment explanation
Indices: 8546420--8546485 Score: 123
Period size: 28 Copynumber: 2.4 Consensus size: 28
8546410 TAAAAAAATA
*
8546420 ACCAAAATATTATAACTTTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTTATTT
8546448 ACCAAAATATTATAAATTTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTTATTT
8546476 ACCAAAATAT
1 ACCAAAATAT
8546486 ACCAAAAACA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (28 bp):
ACCAAAATATTATAAATTTTTTTTATTT
Found at i:8546579 original size:27 final size:27
Alignment explanation
Indices: 8546549--8546627 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 27
8546539 GACCAATCAC
*
8546549 ATTGGCAGCACCAAAT-GTGCCAAAGAT-
1 ATTGGCGGCACC-AATGGTGCCAAAG-TG
* * *
8546576 ATTGGTGGCGCCAATGGTGCCAATGTG
1 ATTGGCGGCACCAATGGTGCCAAAGTG
8546603 ATTGGCGGCACCAATGGTGCCAAAG
1 ATTGGCGGCACCAATGGTGCCAAAG
8546628 GACTAAAATG
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 4 0.09
27 39 0.91
ACGTcount: A:0.28, C:0.22, G:0.30, T:0.20
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAAAGTG
Found at i:8547223 original size:19 final size:19
Alignment explanation
Indices: 8547199--8547286 Score: 108
Period size: 18 Copynumber: 4.7 Consensus size: 19
8547189 TCTAATTAAG
8547199 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTAATT
* * *
8547218 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTAATT
8547236 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTAATT
* * *
8547255 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTAATT
8547273 TAATAACTCTATTT
1 TAATAACTCTATTT
8547287 GCATTTAAAA
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
18 30 0.54
19 26 0.46
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.49
Consensus pattern (19 bp):
TAATAACTCTATTTTAATT
Found at i:8547291 original size:19 final size:18
Alignment explanation
Indices: 8547199--8547294 Score: 97
Period size: 19 Copynumber: 5.2 Consensus size: 18
8547189 TCTAATTAAG
*
8547199 TAATAACTCTATTTTAATT
1 TAATAACTCTA-TTTCATT
*
8547218 TAATAA-ACTATTCTCATT
1 TAATAACTCTATT-TCATT
*
8547236 TAATAACTCTATTTTAATT
1 TAATAACTCTA-TTTCATT
*
8547255 TAATAA-ACTATTCTCATT
1 TAATAACTCTATT-TCATT
8547273 TAATAACTCTATTTGCATT
1 TAATAACTCTATTT-CATT
8547292 TAA
1 TAA
8547295 AATATAAAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
17 4 0.06
18 27 0.42
19 31 0.48
20 2 0.03
ACGTcount: A:0.38, C:0.14, G:0.01, T:0.48
Consensus pattern (18 bp):
TAATAACTCTATTTCATT
Found at i:8547294 original size:37 final size:37
Alignment explanation
Indices: 8547199--8547286 Score: 176
Period size: 37 Copynumber: 2.4 Consensus size: 37
8547189 TCTAATTAAG
8547199 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
8547236 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
8547273 TAATAACTCTATTT
1 TAATAACTCTATTT
8547287 GCATTTAAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.49
Consensus pattern (37 bp):
TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
Found at i:8547457 original size:82 final size:82
Alignment explanation
Indices: 8547363--8547527 Score: 303
Period size: 82 Copynumber: 2.0 Consensus size: 82
8547353 TTAATTAAAA
8547363 TAGTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAATTTATAAATAGATAAAATAG
1 TAGTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAATTTATAAATAGATAAAATAG
*
8547428 TTTATGTTTCCATTATT
66 TTTATATTTCCATTATT
*
8547445 TAGTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAATTTATAAATAGATAAGATAG
1 TAGTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAATTTATAAATAGATAAAATAG
*
8547510 TTTATATTTCCGTTATT
66 TTTATATTTCCATTATT
8547527 T
1 T
8547528 TTTTCCTTTT
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 80 1.00
ACGTcount: A:0.38, C:0.06, G:0.10, T:0.45
Consensus pattern (82 bp):
TAGTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAATTTATAAATAGATAAAATAG
TTTATATTTCCATTATT
Found at i:8547624 original size:19 final size:19
Alignment explanation
Indices: 8547602--8547667 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
8547592 TTTAATTTTT
8547602 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* * *
8547621 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
*
8547639 TTACATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
8547658 TTAAATTAAA
1 TTAAATTAAA
8547668 CTATTTTAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
18 14 0.37
19 24 0.63
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.38
Consensus pattern (19 bp):
TTAAATTAAAATAGAGTTA
Found at i:8548014 original size:27 final size:27
Alignment explanation
Indices: 8547976--8548061 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 27
8547966 TTTTAGTCCT
8547976 TTGGCACCATTGGTGCCGCCAATCA-CA
1 TTGGCACCATTGGTGCCGCCAAT-ATCA
* *
8548003 TTGGCACCATTGGTGCCGCAAATATCT
1 TTGGCACCATTGGTGCCGCCAATATCA
* * *
8548030 TTGGCACCTTTGGTGCCGCCAATGTGA
1 TTGGCACCATTGGTGCCGCCAATATCA
8548057 TTGGC
1 TTGGC
8548062 CTGATCAGGC
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.02
27 50 0.98
ACGTcount: A:0.19, C:0.28, G:0.26, T:0.28
Consensus pattern (27 bp):
TTGGCACCATTGGTGCCGCCAATATCA
Found at i:8548141 original size:28 final size:27
Alignment explanation
Indices: 8548110--8548174 Score: 112
Period size: 28 Copynumber: 2.4 Consensus size: 27
8548100 TTTTTTTGGT
8548110 ATATTTTGGTAAATAAAAAAAATTTATA
1 ATATTTTGGTAAATAAAAAAAA-TTATA
*
8548138 ATATTTTGATAAATAAAAAAAATTATA
1 ATATTTTGGTAAATAAAAAAAATTATA
8548165 ATATTTTGGT
1 ATATTTTGGT
8548175 TATTTTTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 14 0.40
28 21 0.60
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.42
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAATTATA
Found at i:8549960 original size:29 final size:30
Alignment explanation
Indices: 8549900--8549970 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 30
8549890 AGTTGTATGT
** * *
8549900 TTTTATAATAGTTAAAATATAAGTTAATAA
1 TTTTATAATTTTTAAAATATAAATCAATAA
8549930 -TTTATAATTTTTAAAATAATAAATCAA-AA
1 TTTTATAATTTTTAAAAT-ATAAATCAATAA
8549959 TTTTATCAATTT
1 TTTTAT-AATTT
8549971 AGGACTAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
29 17 0.50
30 12 0.35
31 5 0.15
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (30 bp):
TTTTATAATTTTTAAAATATAAATCAATAA
Found at i:8553152 original size:44 final size:44
Alignment explanation
Indices: 8553084--8553537 Score: 549
Period size: 44 Copynumber: 10.4 Consensus size: 44
8553074 AAGTTATTAA
* *
8553084 AGCAGATCTTGTCTTCATGCATTGGCGTGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
* * * * *
8553128 AGCAGGTCCTATCTTCATGTATTGGAGTGAAGTGGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
*** * * *
8553172 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAT
*
8553216 AGTAGATCTTGTCTTCATGTATTGGCGTGAAGT-GAATCGAAGAT
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAG-ATCGAAGAT
*** * * *
8553260 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAT
* *
8553304 AGCAGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAAAAT
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
* * * * *
8553348 AGCAGGTCCTATCTTCATGTATTAGCGTGAAGTGGATCGAAGA-
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
*
8553391 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
*
8553435 AACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
* * *
8553479 AGCAGGTCCTATCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
*
8553523 -GCAGATTTTGTCTTC
1 AGCAGATCTTGTCTTC
8553538 CCATACTGGT
Statistics
Matches: 344, Mismatches: 59, Indels: 15
0.82 0.14 0.04
Matches are distributed among these distances:
43 88 0.26
44 213 0.62
45 43 0.12
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (44 bp):
AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
Found at i:8553563 original size:263 final size:264
Alignment explanation
Indices: 8553095--8553576 Score: 709
Period size: 263 Copynumber: 1.8 Consensus size: 264
8553085 GCAGATCTTG
* *
8553095 TCTTCATGCATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTATCTTCATGTATTGGAGTGAAG
1 TCTTCATGCATTAGCGTGAAGTAGATCAAAGATAGCAGATCCTATCTTCATGTATTGGAGTGAAG
* ** * * * *
8553160 TGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGTAGATCT
66 TAGATCGAAGAAACAGATCTTGTCTTCACATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCC
* *
8553225 TGTCTTCATGTATTGGCGTGAAGTGAATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGA
131 TATCTTCATGTATTGGCGTGAAGTGAATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGA
*
8553290 AGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAAAATAGCAGGT
196 AGTAGATCGAAGAAAACAGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAAAATAGCAGGT
8553355 CCTA
261 CCTA
* * * * * *
8553359 TCTTCATGTATTAGCGTGAAGTGGATCGAAGA-AGCAGATCTTGTCTTCATGTATTGGCGTGAAG
1 TCTTCATGCATTAGCGTGAAGTAGATCAAAGATAGCAGATCCTATCTTCATGTATTGGAGTGAAG
** * * *
8553423 TAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTC
66 TAGATCGAAG-AAACAGATCTTGTCTTCACATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATC
*
8553487 CTATCTTCATGTATTGGCGTGAAGT-AGATCGAAGATGCAGATTTTGTCTTCCCATACTGGTGGC
130 CTATCTTCATGTATTGGCGTGAAGTGA-ATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGC
8553551 GAAGTAGATCGAAGAAAACAGATCTT
194 GAAGTAGATCGAAGAAAACAGATCTT
8553577 ATCTCCCTAA
Statistics
Matches: 192, Mismatches: 24, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
262 1 0.01
263 142 0.74
264 49 0.26
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (264 bp):
TCTTCATGCATTAGCGTGAAGTAGATCAAAGATAGCAGATCCTATCTTCATGTATTGGAGTGAAG
TAGATCGAAGAAACAGATCTTGTCTTCACATATTGGTCGCGAAGTAGATCGAAGAAAGCAGATCC
TATCTTCATGTATTGGCGTGAAGTGAATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGA
AGTAGATCGAAGAAAACAGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAAAATAGCAGGT
CCTA
Found at i:8554213 original size:22 final size:21
Alignment explanation
Indices: 8554188--8554231 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
8554178 ATGCGGGCAA
8554188 TAAAAAAAAAGAAGATAGACAT
1 TAAAAAAAAAGAAGA-AGACAT
* * *
8554210 TAAAGAAGAAGGAGAAGACAT
1 TAAAAAAAAAGAAGAAGACAT
8554231 T
1 T
8554232 TTTTTCGGCT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.61, C:0.05, G:0.20, T:0.14
Consensus pattern (21 bp):
TAAAAAAAAAGAAGAAGACAT
Found at i:8554370 original size:9 final size:9
Alignment explanation
Indices: 8554358--8554400 Score: 68
Period size: 9 Copynumber: 4.7 Consensus size: 9
8554348 CGTCTCTTTC
8554358 TATTTTATT
1 TATTTTATT
*
8554367 TATTTGATCT
1 TATTTTAT-T
8554377 TATTTTATT
1 TATTTTATT
8554386 TATTTTATT
1 TATTTTATT
8554395 TATTTT
1 TATTTT
8554401 GCAAATCTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
9 23 0.74
10 8 0.26
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (9 bp):
TATTTTATT
Found at i:8554382 original size:19 final size:18
Alignment explanation
Indices: 8554358--8554400 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 18
8554348 CGTCTCTTTC
8554358 TATTTTATTTATTTGATCT
1 TATTTTATTTATTTGAT-T
*
8554377 TATTTTATTTATTTTATT
1 TATTTTATTTATTTGATT
8554395 TATTTT
1 TATTTT
8554401 GCAAATCTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 7 0.30
19 16 0.70
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (18 bp):
TATTTTATTTATTTGATT
Done.