Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55868233
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 983842 characters in sequence are not A, C, G, or T
File 31 of 187
Found at i:9917364 original size:21 final size:22
Alignment explanation
Indices: 9917338--9917382 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
9917328 TTATTCATTT
*
9917338 TTTTGTT-TTTATTTTATTT-TA
1 TTTTGTTGTTT-TATTATTTCTA
9917359 TTTTGTTGTTTTATTATTTCTA
1 TTTTGTTGTTTTATTATTTCTA
9917381 TT
1 TT
9917383 GATTATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.13, C:0.02, G:0.07, T:0.78
Consensus pattern (22 bp):
TTTTGTTGTTTTATTATTTCTA
Found at i:9919944 original size:21 final size:21
Alignment explanation
Indices: 9919919--9919967 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
9919909 CTTGTAATAG
*
9919919 GGAAAAACTTGAAATTTTATA
1 GGAAAAACATGAAATTTTATA
* *
9919940 GGAAATTACATGAATTTTTATA
1 GGAAA-AACATGAAATTTTATA
9919962 -GAAAAA
1 GGAAAAA
9919968 GTTTGGGTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 1 0.04
21 9 0.39
22 13 0.57
ACGTcount: A:0.49, C:0.04, G:0.14, T:0.33
Consensus pattern (21 bp):
GGAAAAACATGAAATTTTATA
Found at i:9921524 original size:20 final size:20
Alignment explanation
Indices: 9921488--9921525 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9921478 TAGAGACCGG
*
9921488 ATTAAATTAGTTCATTTACT
1 ATTAAATTAGATCATTTACT
9921508 ATTAAA-TAGATCAATTTA
1 ATTAAATTAGATC-ATTTA
9921526 GATCGCGTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (20 bp):
ATTAAATTAGATCATTTACT
Found at i:9938416 original size:20 final size:20
Alignment explanation
Indices: 9938380--9938417 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9938370 TAGAGACCGG
*
9938380 ATTAAATTAGTTCATTTACT
1 ATTAAATTAGATCATTTACT
9938400 ATTAAA-TAGATCAATTTA
1 ATTAAATTAGATC-ATTTA
9938418 GATCGCGTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (20 bp):
ATTAAATTAGATCATTTACT
Found at i:9943186 original size:2 final size:2
Alignment explanation
Indices: 9943179--9943211 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
9943169 TTATAAATAA
9943179 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9943212 AGAACTAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9946854 original size:17 final size:18
Alignment explanation
Indices: 9946818--9946850 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
9946808 TGTCATGTAT
9946818 TTTTTTTCAAAATATTTA
1 TTTTTTTCAAAATATTTA
9946836 TTTTTTT--AAATATTT
1 TTTTTTTCAAAATATTT
9946851 TATTATACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.53
18 7 0.47
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTTTTCAAAATATTTA
Found at i:9953704 original size:24 final size:24
Alignment explanation
Indices: 9953670--9953721 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
9953660 TTTCTAGAAG
* **
9953670 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAACATAATAT
*
9953694 ATTTAGCATTTATTAACATAATAT
1 ATTTAGCATTTATGAACATAATAT
9953718 ATTT
1 ATTT
9953722 GACTTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAACATAATAT
Found at i:9956262 original size:17 final size:18
Alignment explanation
Indices: 9956236--9956269 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
9956226 ATGAACTACA
9956236 AATAACCAATA-AATACC
1 AATAACCAATACAATACC
*
9956253 AATAAGCAATACAATAC
1 AATAACCAATACAATAC
9956270 ACACAAGAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.59, C:0.21, G:0.03, T:0.18
Consensus pattern (18 bp):
AATAACCAATACAATACC
Found at i:9956666 original size:24 final size:24
Alignment explanation
Indices: 9956639--9956765 Score: 63
Period size: 24 Copynumber: 5.3 Consensus size: 24
9956629 TATATGGAAA
*
9956639 TTAAAATATTAATATATAATAAAT
1 TTAAAATATTAATACATAATAAAT
**
9956663 TTAAAAAATATTAATACATGAA-AAGC
1 TT--AAAATATTAATACAT-AATAAAT
*
9956689 TTAGAAA-AATAATACATACA-AAA-
1 TTA-AAATATTAATACATA-ATAAAT
* * **
9956712 TTAAAATAATAATATACGATAAAT
1 TTAAAATATTAATACATAATAAAT
9956736 TTAAACA-ATGT--TA-ATAATAAAT
1 TTAAA-ATAT-TAATACATAATAAAT
9956758 TTAAAATA
1 TTAAAATA
9956766 ATGTTGAGCT
Statistics
Matches: 81, Mismatches: 11, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
21 1 0.01
22 17 0.21
23 17 0.21
24 21 0.26
25 5 0.06
26 18 0.22
27 2 0.02
ACGTcount: A:0.59, C:0.05, G:0.04, T:0.32
Consensus pattern (24 bp):
TTAAAATATTAATACATAATAAAT
Found at i:9956696 original size:26 final size:26
Alignment explanation
Indices: 9956641--9956722 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
9956631 TATGGAAATT
* *
9956641 AAAATATTAATATATAATAAATTTAA
1 AAAATATTAATACATAATAAACTTAA
* *
9956667 AAAATATTAATACATGAA-AAGCTTAG
1 AAAATATTAATACAT-AATAAACTTAA
9956693 AAAA-A-TAATACATACA-AAA-TTAA
1 AAAATATTAATACATA-ATAAACTTAA
9956716 AATAATA
1 AA-AATA
9956723 ATATACGATA
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
23 6 0.13
24 13 0.28
25 2 0.04
26 23 0.50
27 2 0.04
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.29
Consensus pattern (26 bp):
AAAATATTAATACATAATAAACTTAA
Found at i:9956816 original size:27 final size:24
Alignment explanation
Indices: 9956758--9956818 Score: 113
Period size: 24 Copynumber: 2.5 Consensus size: 24
9956748 AATAATAAAT
*
9956758 TTAAAATAATGTTGAGCTTGATCA
1 TTAAAATAATATTGAGCTTGATCA
9956782 TTAAAATAATATTGAGCTTGATCA
1 TTAAAATAATATTGAGCTTGATCA
9956806 TTAAAATAATATT
1 TTAAAATAATATT
9956819 AATTTTAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (24 bp):
TTAAAATAATATTGAGCTTGATCA
Found at i:9960855 original size:46 final size:46
Alignment explanation
Indices: 9960788--9961168 Score: 393
Period size: 46 Copynumber: 8.0 Consensus size: 46
9960778 AATCTATTCC
* * * * *
9960788 ACTGCAACGCTAGGGAAATAAGGTTCGCTGCATTCAGCTCTAATCT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT
*
9960834 ACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTATT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T
*
9960883 CCACTGCAACGCCAAGGAAATAAGATTCGATGCCTTCAGCTTTAATCT
1 --ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT
*
9960931 ACTACAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT
* * * * * * * * *
9960977 ATTACAATGCTAGGGAAATAAGATTTGCTGCATTCAACTTTAATTTGTTCC
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAA-----TCT
* * * *
9961028 ACTGCAACGCCAAGGAAATAAGACTCACTTCTTTCAGCTTTAATCTGTT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATC---T
* * *
9961077 CCATTGCAATGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATTT
1 --ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT
* *
9961125 ACTACAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAAT
1 ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAAT
9961169 TTATTCCACG
Statistics
Matches: 281, Mismatches: 39, Indels: 30
0.80 0.11 0.09
Matches are distributed among these distances:
46 163 0.58
48 2 0.01
49 1 0.00
51 115 0.41
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (46 bp):
ACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT
Found at i:9960884 original size:97 final size:97
Alignment explanation
Indices: 9960772--9961203 Score: 514
Period size: 97 Copynumber: 4.5 Consensus size: 97
9960762 CATAATTTGT
* *
9960772 AGCTTTAATCTATTCCACTGCAACGCTAGGGAAATAAGGTTCGCTGCATTCAGCTCTAATCTACT
1 AGCTTTAATCTATTCCACTGCAACGCTAGGGAAATAAGATTCGCTGCATTCAGCTTTAATCTACT
* *
9960837 GCAACGCCAGGGAAATAAGATTCGCTGCCTTC
66 ACAACGCCAAGGAAATAAGATTCGCTGCCTTC
* * * *
9960869 AGCTTTAATCTATTCCACTGCAACGCCAAGGAAATAAGATTCGATGCCTTCAGCTTTAATCTACT
1 AGCTTTAATCTATTCCACTGCAACGCTAGGGAAATAAGATTCGCTGCATTCAGCTTTAATCTACT
9960934 ACAACGCCAAGGAAATAAGATTCGCTGCCTTC
66 ACAACGCCAAGGAAATAAGATTCGCTGCCTTC
* * *
9960966 AGCTTTAATCTATT--A---CAATGCTAGGGAAATAAGATTTGCTGCATTCAACTTTAATTTGTT
1 AGCTTTAATCTATTCCACTGCAACGCTAGGGAAATAAGATTCGCTGCATTCAGCTTTAA-----T
* * * * * *
9961026 CCACTGCAACGCCAAGGAAATAAGACTCACTTCTTTC
61 CTACTACAACGCCAAGGAAATAAGATTCGCTGCCTTC
* * * * * * *
9961063 AGCTTTAATCTGTTCCATTGCAATGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATTTACT
1 AGCTTTAATCTATTCCACTGCAACGCTAGGGAAATAAGATTCGCTGCATTCAGCTTTAATCTACT
*
9961128 ACAACGCCAGGGAAATAAGATTCGCTGCCTTC
66 ACAACGCCAAGGAAATAAGATTCGCTGCCTTC
* * * * *
9961160 AGCTTTAATTTATTCCACGGCATCTCTAGGAAAATAAGATTCGC
1 AGCTTTAATCTATTCCACTGCAACGCTAGGGAAATAAGATTCGC
9961204 CATAATGACT
Statistics
Matches: 280, Mismatches: 45, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
92 32 0.11
95 1 0.00
97 212 0.76
99 1 0.00
102 34 0.12
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (97 bp):
AGCTTTAATCTATTCCACTGCAACGCTAGGGAAATAAGATTCGCTGCATTCAGCTTTAATCTACT
ACAACGCCAAGGAAATAAGATTCGCTGCCTTC
Found at i:9967271 original size:2 final size:2
Alignment explanation
Indices: 9967264--9967294 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
9967254 CACCAAATCC
*
9967264 TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9967295 TAGTATTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:9968166 original size:42 final size:43
Alignment explanation
Indices: 9968119--9968219 Score: 134
Period size: 43 Copynumber: 2.4 Consensus size: 43
9968109 GCTCCCGGTA
*
9968119 TCGCACACTTAGTGCCC-GTTATTCAATATC-TCCATTTTAATT
1 TCGCACACTTAGTGCCCTGTTATTCAACATCAT-CATTTTAATT
* * *
9968161 TCGCACACTTAGTGCCCTTTTATTCAACCTCATCATTTTAGTT
1 TCGCACACTTAGTGCCCTGTTATTCAACATCATCATTTTAATT
*
9968204 CCGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
9968220 GTTTATATAA
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
42 17 0.33
43 34 0.65
44 1 0.02
ACGTcount: A:0.22, C:0.30, G:0.11, T:0.38
Consensus pattern (43 bp):
TCGCACACTTAGTGCCCTGTTATTCAACATCATCATTTTAATT
Found at i:9969985 original size:24 final size:24
Alignment explanation
Indices: 9969958--9970080 Score: 74
Period size: 24 Copynumber: 5.0 Consensus size: 24
9969948 TTGAATTTAC
*
9969958 ATAAAAAAATATGAAATAAT-ATAT
1 ATAAAAAAAT-TAAAATAATAATAT
**
9969982 ATAAGGAAATTAAAATAATAATAT
1 ATAAAAAAATTAAAATAATAATAT
* * * *
9970006 ATAATAAATTTAAAAAAATATTA-
1 ATAAAAAAATTAAAATAATAATAT
* *
9970029 ATACATGAAAAGCTTAGAAA-AATAATAC
1 ATA-A--AAAA-ATTA-AAATAATAATAT
*
9970057 AT-ACAAAATTAAAATAATAATAT
1 ATAAAAAAATTAAAATAATAATAT
9970080 A
1 A
9970081 CGATAAATTT
Statistics
Matches: 77, Mismatches: 14, Indels: 17
0.71 0.13 0.16
Matches are distributed among these distances:
22 3 0.04
23 22 0.29
24 34 0.44
26 4 0.05
27 9 0.12
28 5 0.06
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.28
Consensus pattern (24 bp):
ATAAAAAAATTAAAATAATAATAT
Found at i:9970088 original size:23 final size:22
Alignment explanation
Indices: 9970047--9970120 Score: 55
Period size: 23 Copynumber: 3.4 Consensus size: 22
9970037 AAAGCTTAGA
*
9970047 AAAATAAT-ACATACA-AAATT
1 AAAATAATAATATACATAAATT
9970067 AAAATAATAATATACGATAAATT
1 AAAATAATAATATAC-ATAAATT
* * **
9970090 TAAACAATGTTAATA-ATAAATTT
1 AAAATAATAAT-ATACATAAA-TT
9970113 AAAATAAT
1 AAAATAAT
9970121 GTTGAGCTTG
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
20 8 0.19
21 5 0.12
22 6 0.14
23 20 0.48
24 3 0.07
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.31
Consensus pattern (22 bp):
AAAATAATAATATACATAAATT
Found at i:9972047 original size:10 final size:10
Alignment explanation
Indices: 9972032--9972056 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
9972022 TTTAAACTTC
9972032 ATATATACAT
1 ATATATACAT
9972042 ATATATACAT
1 ATATATACAT
9972052 ATATA
1 ATATA
9972057 CCTTTTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (10 bp):
ATATATACAT
Found at i:9972713 original size:2 final size:2
Alignment explanation
Indices: 9972706--9972732 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
9972696 CTTAATTTTG
9972706 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
9972733 TTTTTTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9977670 original size:5 final size:5
Alignment explanation
Indices: 9977660--9977717 Score: 61
Period size: 5 Copynumber: 11.8 Consensus size: 5
9977650 AGGATGTTCA
9977660 AAAAG AAAAG --AAG AAAAG AAAAAG AAAAG AAAAG -AAA- AAAAG AAGAAG
1 AAAAG AAAAG AAAAG AAAAG -AAAAG AAAAG AAAAG AAAAG AAAAG AA-AAG
9977708 AAAAAG AAAA
1 -AAAAG AAAA
9977718 AGGAGAGACC
Statistics
Matches: 46, Mismatches: 0, Indels: 14
0.77 0.00 0.23
Matches are distributed among these distances:
3 3 0.07
4 6 0.13
5 24 0.52
6 11 0.24
7 2 0.04
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:9977683 original size:19 final size:19
Alignment explanation
Indices: 9977659--9977719 Score: 76
Period size: 16 Copynumber: 3.3 Consensus size: 19
9977649 AAGGATGTTC
9977659 AAAAAGAAAAGAAGAAAAG
1 AAAAAGAAAAGAAGAAAAG
9977678 AAAAAG--AA-AAGAAAAG
1 AAAAAGAAAAGAAGAAAAG
9977694 AAAAA-AAGAAGAAGAAAAAG
1 AAAAAGAA-AAGAAG-AAAAG
9977714 AAAAAG
1 AAAAAG
9977720 GAGAGACCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
16 13 0.36
17 2 0.06
18 2 0.06
19 9 0.25
20 10 0.28
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (19 bp):
AAAAAGAAAAGAAGAAAAG
Found at i:9977687 original size:24 final size:25
Alignment explanation
Indices: 9977659--9977717 Score: 93
Period size: 24 Copynumber: 2.4 Consensus size: 25
9977649 AAGGATGTTC
*
9977659 AAAAAGAAAAGAAGAAAAGAAAAAG
1 AAAAAGAAAAGAAAAAAAGAAAAAG
*
9977684 -AAAAGAAAAGAAAAAAAGAAGAAG
1 AAAAAGAAAAGAAAAAAAGAAAAAG
9977708 AAAAAGAAAA
1 AAAAAGAAAA
9977718 AGGAGAGACC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 22 0.71
25 9 0.29
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (25 bp):
AAAAAGAAAAGAAAAAAAGAAAAAG
Found at i:9978247 original size:105 final size:107
Alignment explanation
Indices: 9977982--9978303 Score: 481
Period size: 105 Copynumber: 3.0 Consensus size: 107
9977972 GGGCACCTGC
* *
9977982 TTTCATCTTATTCATTTTGTATCTTAGCAAAATTTGCTATCTTGATT-ATTTGTTTATTTCGAGC
1 TTTCATCTTATTCATTTTGTATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTCGAGC
*
9978046 TTTGTTCTCAATAAAATTCCATCCTGTCCATTGTGATAATCCT
66 TTTGTTCTCAATAAAATTCCATCTTGTCCATTGTGATAAT-CT
* *
9978089 TTTCATCTTATTCATTTTGGATCTTAGCAAAATTTGCTATCCTGATTAATTTATTCATTTCGAGC
1 TTTCATCTTATTCATTTTGTATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTCGAGC
* *
9978154 TTTGCTCTCAATAAAATTCCATCTTATCCATTGTGAT-AT-T
66 TTTGTTCTCAATAAAATTCCATCTTGTCCATTGTGATAATCT
* * * *
9978194 TTTCATCTTATTCAGTTCGTATCTGAGCAAAATTTGCTATCTTGATTAATTTATTCATTTTGAGC
1 TTTCATCTTATTCATTTTGTATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTCGAGC
* *
9978259 CTTATTCTCAATAAAATTCCATCTTGTCCATCT-TGATAATCT
66 TTTGTTCTCAATAAAATTCCATCTTGTCCAT-TGTGATAATCT
9978301 TTT
1 TTT
9978304 TCAAGCATTT
Statistics
Matches: 194, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
105 91 0.47
106 3 0.02
107 51 0.26
108 49 0.25
ACGTcount: A:0.25, C:0.18, G:0.10, T:0.48
Consensus pattern (107 bp):
TTTCATCTTATTCATTTTGTATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTCGAGC
TTTGTTCTCAATAAAATTCCATCTTGTCCATTGTGATAATCT
Found at i:9978797 original size:24 final size:24
Alignment explanation
Indices: 9978770--9978825 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
9978760 ATGTCCCAAA
* *
9978770 ATTACCGTGGATTTAACCTTGAAG
1 ATTACAGTGGATTGAACCTTGAAG
9978794 ATTACAGTGGATTGAACCTTGAAG
1 ATTACAGTGGATTGAACCTTGAAG
9978818 ATTACAGT
1 ATTACAGT
9978826 AGGGGCAATC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.32
Consensus pattern (24 bp):
ATTACAGTGGATTGAACCTTGAAG
Found at i:9979328 original size:89 final size:89
Alignment explanation
Indices: 9979203--9979437 Score: 247
Period size: 89 Copynumber: 2.6 Consensus size: 89
9979193 GCAGCAAATT
* * * * * *
9979203 TTGTCTTCTTGTATTGGCAGTGAAGCAGATCAAAAACACAAGTC-TGACCTTCCTGAGTTTGCAA
1 TTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACAAGCCTTG-CCTCCCTGAGTTTACAA
** * *
9979267 TGGAGCAGACTAAAAACAATAGATC
65 CAGAACAGACTAAAAACAACAGATC
* * * *
9979292 TTGTCTTCCTGTACCGGGAGTGAAGCAGATCGAAAACACCAGCCTTGTCTCCCTGAGTTTACAAC
1 TTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACAAGCCTTGCCTCCCTGAGTTTACAAC
* ** *
9979357 AGAACAGACTAGAAGGAGCAGATC
66 AGAACAGACTAAAAACAACAGATC
* * * **
9979381 TTGTCTTCCTGTACTGGCAGTGAAGCAAATTGAAGACACAAGCCTTATCTCCCTGAG
1 TTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACAAGCCTTGCCTCCCTGAG
9979438 CAACATTGGA
Statistics
Matches: 120, Mismatches: 25, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
89 118 0.98
90 2 0.02
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.25
Consensus pattern (89 bp):
TTGTCTTCCTGTACTGGCAGTGAAGCAGATCGAAAACACAAGCCTTGCCTCCCTGAGTTTACAAC
AGAACAGACTAAAAACAACAGATC
Found at i:9979601 original size:87 final size:86
Alignment explanation
Indices: 9979510--9979839 Score: 269
Period size: 87 Copynumber: 3.8 Consensus size: 86
9979500 AAGACGGTGA
* **
9979510 ATCTTATCTTCCTAAGATAGTAG-GAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAGTAGCA
1 ATCTTATCTCCCTAAGATAGTAGTGAA-CAGATCAAAGCCACCAG-CCTATCTCCCTGAGTAGCA
*
9979574 GTGGAGTAGGTCGAAGATTGCAG
64 GTGGAGTAGGTCGAAGATTGTAG
* ** * * * * * * *
9979597 ATCTTGTCTTTCTATA-CTGGCAGTGAACAGATCGAAGCTACAAGCCTTATCTCCCTGAGCAGCA
1 ATCTTATCTCCCTA-AGATAGTAGTGAACAGATCAAAGCCACCAGCC-TATCTCCCTGAGTAGC-
* * *
9979661 ACT-GAGTAGGTTGAATATAT-TAG
63 AGTGGAGTAGGTCGAAGAT-TGTAG
* * *
9979684 ATCTTATCTCCCTAAG-CAGTAGTGGAACAGATCAAAGGCACCAGCCCTATCTCCTTGAGTAGCA
1 ATCTTATCTCCCTAAGATAGTAGT-GAACAGATCAAAGCCACCAG-CCTATCTCCCTGAGTAGCA
* *
9979748 GCGGAGTAGGTCAAAGATTGTAG
64 GTGGAGTAGGTCGAAGATTGTAG
* * * *
9979771 ATCTTATCTCCCTAAG-TAGTAGTGGAGCAGATCGAAAG-CACCAACCTTATCCCCCTGAAGTTG
1 ATCTTATCTCCCTAAGATAGTAGT-GAACAGATC-AAAGCCACCAGCC-TATCTCCCTG-AGTAG
9979834 CAGTGG
62 CAGTGG
9979840 GGCAAGTTGA
Statistics
Matches: 192, Mismatches: 38, Indels: 25
0.75 0.15 0.10
Matches are distributed among these distances:
86 11 0.06
87 159 0.83
88 22 0.11
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (86 bp):
ATCTTATCTCCCTAAGATAGTAGTGAACAGATCAAAGCCACCAGCCTATCTCCCTGAGTAGCAGT
GGAGTAGGTCGAAGATTGTAG
Found at i:9979804 original size:174 final size:174
Alignment explanation
Indices: 9979510--9979828 Score: 405
Period size: 174 Copynumber: 1.8 Consensus size: 174
9979500 AAGACGGTGA
* ** *
9979510 ATCTTATCTTCCTAAGATAGTAGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAGTAGCAG
1 ATCTTATCTCCCTAAGATAGTAGGAAGCAGATCAAAGCCACCAGCCCTATCTCCCTGAGTAGCAG
* * * ** *
9979575 TGGAGTAGGTCGAAGATTGCAGATCTTGTCTTTCTATACTGGCAGTGAACAGATCG-AAGCTA-C
66 CGGAGTAGGTCAAAGATTGCAGATCTTATCTCCCTATACTAGCAGTGAACAGATCGAAAGC-ACC
*
9979638 AAGCCTTATCTCCCTGAGCAGCAACTGAGTAGGTTGAATATATTAG
130 AA-CCTTATCCCCCTGAGCAGCAACTGAGTAGGTTGAATATATTAG
* *
9979684 ATCTTATCTCCCTAAGCAGTAGT-GGAA-CAGATCAAAGGCACCAGCCCTATCTCCTTGAGTAGC
1 ATCTTATCTCCCTAAG-A-TAGTAGGAAGCAGATCAAAGCCACCAGCCCTATCTCCCTGAGTAGC
* * * *
9979747 AGCGGAGTAGGTCAAAGATTGTAGATCTTATCTCCCTA-AGTAGTAGTGGAGCAGATCGAAAGCA
64 AGCGGAGTAGGTCAAAGATTGCAGATCTTATCTCCCTATACTAGCAGT-GAACAGATCGAAAGCA
9979811 CCAACCTTATCCCCCTGA
128 CCAACCTTATCCCCCTGA
9979829 AGTTGCAGTG
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
173 6 0.05
174 101 0.82
175 12 0.10
176 4 0.03
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (174 bp):
ATCTTATCTCCCTAAGATAGTAGGAAGCAGATCAAAGCCACCAGCCCTATCTCCCTGAGTAGCAG
CGGAGTAGGTCAAAGATTGCAGATCTTATCTCCCTATACTAGCAGTGAACAGATCGAAAGCACCA
ACCTTATCCCCCTGAGCAGCAACTGAGTAGGTTGAATATATTAG
Found at i:9979867 original size:87 final size:87
Alignment explanation
Indices: 9979670--9979875 Score: 211
Period size: 87 Copynumber: 2.4 Consensus size: 87
9979660 AACTGAGTAG
* * * *
9979670 GTTGAATATATTAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCAAAGGCACCAGCCCTATC
1 GTTGAAGATATGAGATCTTATCTCCCTAAGTAGTAGTGGAACAGATCAAAGGCACCAACCCTATC
* * * *
9979735 TCCTTGAGTAGCAGCGGAGTAG
66 CCCCTGAGTAGCAGCGGAGCAA
** * *
9979757 GTCAAAGAT-TGTAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAA-GCACCAACCTTA
1 GTTGAAGATATG-AGATCTTATCTCCCTAAGTAGTAGTGGAACAGATC-AAAGGCACCAACCCTA
* * *
9979820 TCCCCCTGAAGTTGCAGTGGGGCAA
64 TCCCCCTG-AGTAGCAGCGGAGCAA
*
9979845 GTTGAAGATATGAG-TCTGATCTCCCTGAAGT
1 GTTGAAGATATGAGATCTTATCTCCCT-AAGT
9979876 TGCAATGGAA
Statistics
Matches: 96, Mismatches: 18, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
86 1 0.01
87 66 0.69
88 27 0.28
89 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (87 bp):
GTTGAAGATATGAGATCTTATCTCCCTAAGTAGTAGTGGAACAGATCAAAGGCACCAACCCTATC
CCCCTGAGTAGCAGCGGAGCAA
Found at i:9979869 original size:174 final size:174
Alignment explanation
Indices: 9979548--9979870 Score: 368
Period size: 174 Copynumber: 1.9 Consensus size: 174
9979538 AGATTTAAGC
* * * * **
9979548 CACCAGTCCTATCTCCCTGAGTAGCAGTGGAGTAGGTCGAAGATTGCAGATCTTGTCTTTCTATA
1 CACCAGCCCTATCTCCCTGAGTAGCAGCGGAGTAGGTCAAAGATTGCAGATCTTATCTCCCTATA
* * * * *
9979613 CTGGCAGTGAACAGATCGAAGCTACAAGCCTTATCTCCCTGAGCAGCAACTGAGTAGGTTGAATA
66 CTAGCAGTGAACAGATCGAAGCTACAAGCCTTATCCCCCTGAGCAGCAACTGAGCAAGTTGAAGA
* *
9979678 TATTAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCAAAGG
131 TATGAGATCTGATCTCCCTAAGCAGTAGTGGAACAGATCAAAGG
* *
9979722 CACCAGCCCTATCTCCTTGAGTAGCAGCGGAGTAGGTCAAAGATTGTAGATCTTATCTCCCTA-A
1 CACCAGCCCTATCTCCCTGAGTAGCAGCGGAGTAGGTCAAAGATTGCAGATCTTATCTCCCTATA
* * * ** * *
9979786 GTAGTAGTGGAGCAGATCGAAAGC-ACCAA-CCTTATCCCCCTGAAGTTGC-AGTGGGGCAAGTT
66 CTAGCAGT-GAACAGATCG-AAGCTA-CAAGCCTTATCCCCCTG-AGCAGCAACT-GAGCAAGTT
9979848 GAAGATATGAG-TCTGATCTCCCT
126 GAAGATATGAGATCTGATCTCCCT
9979871 GAAGTTGCAA
Statistics
Matches: 122, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
173 6 0.05
174 90 0.74
175 26 0.21
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.26
Consensus pattern (174 bp):
CACCAGCCCTATCTCCCTGAGTAGCAGCGGAGTAGGTCAAAGATTGCAGATCTTATCTCCCTATA
CTAGCAGTGAACAGATCGAAGCTACAAGCCTTATCCCCCTGAGCAGCAACTGAGCAAGTTGAAGA
TATGAGATCTGATCTCCCTAAGCAGTAGTGGAACAGATCAAAGG
Found at i:9980214 original size:44 final size:45
Alignment explanation
Indices: 9979972--9980216 Score: 135
Period size: 45 Copynumber: 5.4 Consensus size: 45
9979962 TCTTATGTCA
* * * * *
9979972 CTGAGGTTGCAGTAGAATAGACTGAAGATAACAG-ATCATATCTCC
1 CTGAAGTTGCAGTGGAGTAGACTGAAGAT-ACTGAATCCTATCTCC
* * * *
9980017 CTGAAGTTGCAGTGGAGCAGACCGAA-ATAATGAATCCTATAC-CT
1 CTGAAGTTGCAGTGGAGTAGACTGAAGATACTGAATCCTAT-CTCC
* * * * ** * *
9980061 CTAAAGTTGCAATAGGTTGGATTAAACTTATCATAAC--AAGTCTTATCTCA
1 CTGAAGTTGC---A-G-TGGAGTAGACTGAAGAT-ACTGAA-TCCTATCTCC
* * * * *
9980111 CT-AAGGTTGCAGTAGAGTAGACTGAAGATAGTGAGTCTTATGTCC
1 CTGAA-GTTGCAGTGGAGTAGACTGAAGATACTGAATCCTATCTCC
*
9980156 CTGAAGTTGCAGTGGAGTAGACTGAAGCTACT-AATCCTATCTCC
1 CTGAAGTTGCAGTGGAGTAGACTGAAGATACTGAATCCTATCTCC
*
9980200 CTGAAGTTGTAGTGGAG
1 CTGAAGTTGCAGTGGAG
9980217 CGGATTAAAA
Statistics
Matches: 149, Mismatches: 36, Indels: 31
0.69 0.17 0.14
Matches are distributed among these distances:
43 2 0.01
44 44 0.30
45 67 0.45
46 4 0.03
47 2 0.01
48 1 0.01
49 13 0.09
50 15 0.10
51 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (45 bp):
CTGAAGTTGCAGTGGAGTAGACTGAAGATACTGAATCCTATCTCC
Found at i:9981221 original size:6 final size:7
Alignment explanation
Indices: 9981204--9981228 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
9981194 CACACTTCTT
9981204 TTTTTTA
1 TTTTTTA
9981211 TTTTTTA
1 TTTTTTA
9981218 TTTTTTA
1 TTTTTTA
9981225 TTTT
1 TTTT
9981229 GTATATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:9982240 original size:10 final size:10
Alignment explanation
Indices: 9982225--9982249 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
9982215 AAACTTCATC
9982225 ATATATACAT
1 ATATATACAT
9982235 ATATATACAT
1 ATATATACAT
9982245 ATATA
1 ATATA
9982250 CCTTTTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (10 bp):
ATATATACAT
Found at i:9982531 original size:28 final size:28
Alignment explanation
Indices: 9982490--9982555 Score: 69
Period size: 32 Copynumber: 2.2 Consensus size: 28
9982480 CAAATACATT
*
9982490 TATATACATGCATACGTATTTTATGACAGATA
1 TATATACATACATAC---TTTTAT-ACAGATA
* *
9982522 TATATACATACATACTTTTATATATATA
1 TATATACATACATACTTTTATACAGATA
9982550 TATATA
1 TATATA
9982556 TATTATCGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
28 11 0.35
29 6 0.19
32 14 0.45
ACGTcount: A:0.41, C:0.11, G:0.06, T:0.42
Consensus pattern (28 bp):
TATATACATACATACTTTTATACAGATA
Found at i:9983568 original size:31 final size:29
Alignment explanation
Indices: 9983533--9983606 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
9983523 ACTACCAAAA
* *
9983533 TAGTCACTTTTGTTTGGCACAGGTTACATTT
1 TAGTCACTTATGTTT-G-AAAGGTTACATTT
* *
9983564 TAGTCACTTATGTTTGAAATGTTACGTTT
1 TAGTCACTTATGTTTGAAAGGTTACATTT
9983593 TAGTCACTTATGTT
1 TAGTCACTTATGTT
9983607 ATCACGTTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 24 0.62
30 1 0.03
31 14 0.36
ACGTcount: A:0.22, C:0.14, G:0.18, T:0.47
Consensus pattern (29 bp):
TAGTCACTTATGTTTGAAAGGTTACATTT
Found at i:9983628 original size:31 final size:29
Alignment explanation
Indices: 9983558--9983631 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
9983548 GGCACAGGTT
* *
9983558 ACATTTTAGTCACTTATGTTTGAAATGTT
1 ACATTTTAGTCACTTATGTTTCAAATGTA
* **
9983587 ACGTTTTAGTCACTTATGTTATCACGTTGTA
1 ACATTTTAGTCACTTATGTT-TCA-AATGTA
9983618 ACATTTTAGTCACT
1 ACATTTTAGTCACT
9983632 GAGCCGTTAG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 19 0.51
30 2 0.05
31 16 0.43
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.46
Consensus pattern (29 bp):
ACATTTTAGTCACTTATGTTTCAAATGTA
Found at i:9985426 original size:2 final size:2
Alignment explanation
Indices: 9985419--9985455 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
9985409 CACCAAATCC
*
9985419 TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9985456 TAGTATTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:9989804 original size:13 final size:13
Alignment explanation
Indices: 9989783--9989831 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
9989773 TTGGCAATGC
9989783 TTTTG-AAAAGTG
1 TTTTGAAAAAGTG
*
9989795 TTTTTAAAAAGTG
1 TTTTGAAAAAGTG
* *
9989808 CTGTGAAAAAGTG
1 TTTTGAAAAAGTG
9989821 CTTTTGAAAAA
1 -TTTTGAAAAA
9989832 TTTGGTTTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
12 4 0.14
13 17 0.59
14 8 0.28
ACGTcount: A:0.39, C:0.04, G:0.20, T:0.37
Consensus pattern (13 bp):
TTTTGAAAAAGTG
Found at i:9994565 original size:21 final size:21
Alignment explanation
Indices: 9994539--9994609 Score: 106
Period size: 21 Copynumber: 3.4 Consensus size: 21
9994529 TTTTACTTTG
*
9994539 CTCTGCTTCCCTCGCTACAGC
1 CTCTGCTTCCCTCGCTGCAGC
*
9994560 CTCTGCTTTCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
9994581 CTCTACTTCCCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
9994602 CTCTGCTT
1 CTCTGCTT
9994610 TAAGTTGTAG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.06, C:0.46, G:0.15, T:0.32
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:9999305 original size:14 final size:14
Alignment explanation
Indices: 9999288--9999314 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9999278 AACCCTTAAA
9999288 CCATAATCCCTAAT
1 CCATAATCCCTAAT
9999302 CCATAATCCCTAA
1 CCATAATCCCTAA
9999315 ACCCATACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.26
Consensus pattern (14 bp):
CCATAATCCCTAAT
Found at i:9999552 original size:115 final size:114
Alignment explanation
Indices: 9999405--9999896 Score: 646
Period size: 115 Copynumber: 4.3 Consensus size: 114
9999395 ACCCTATGTT
* * * * * *
9999405 TTTTTTTGCGGCGCTTTCCCAAAAACACCGCTAAAGACCTGAGTATTAGTGGCGCTTTCCTAAAC
1 TTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTT-CTAAAA
*
9999470 AACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTATG
65 AACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTATG
* * * * *
9999520 TCTTTTTGCGACGCTTTCTCAAAAACGTCGCTAAAGCCCTGAGCATTAGCGGCACTTCCTAAAAA
1 TTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTAAAAA
* * * *
9999585 ACGCCACTAAATCCGCGAAAGCTCAGAAAACGACGTCATTGGGCTTA-G
66 ACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTATG
* *
9999633 TTTATTTTGCGGCGCTTTCTCAAAAATGCCGCTAAAGCCCTTAGCATTAGCGGCGCTTTCTAAAG
1 TTT-TTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTAAA-
* * *
9999698 AAACGCCGCTAAATCCCCGAAAACTCAGAAAACGGCGTCGTTAGGTTTATG
64 AAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTATG
* * * * * * *
9999749 TTTCTTTGCGGCGCTTCCACAAAAACGTCGCTAAAGCACTGAACATTAGCAGCGCTTTCTAAAAA
1 TTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTAAAAA
* * * *
9999814 ATGCCGCTAAGTCCCCGAAAGC-CAGAAAACGGGGTCGTTGGGCTTAAG
66 ACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTATG
*
9999862 TTTTTTTGCGGCGCTTTGTCAAAAACGCCGCTAAA
1 TTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAA
9999897 TCCACGAAAG
Statistics
Matches: 323, Mismatches: 51, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
113 55 0.17
114 123 0.38
115 141 0.44
116 4 0.01
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (114 bp):
TTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTAAAAA
ACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTATG
Found at i:9999813 original size:229 final size:228
Alignment explanation
Indices: 9999405--9999896 Score: 675
Period size: 229 Copynumber: 2.2 Consensus size: 228
9999395 ACCCTATGTT
* * * * *
9999405 TTTTTTTGCGGCGCTTTCCCAAAAACACCGCTAAAGACCTGAGTATTAGTGGCGCTTTCCTAAAC
1 TTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCCTAAAA
* *
9999470 AACGCCGCTAAATCCCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTATGTCTTTTTGCGACGCT
66 AACGCCGCTAAATCCCCGAAAACTCAAAAAACGGCGTCGTTAGGCTTATGTCTTTTTGCGACGCT
* * * * * *
9999535 TTCTCAAAAACGTCGCTAAAGCCCTGAGCATTAGCGGCACTTCCTAAAAAACGCCACTAAATCCG
131 TCCACAAAAACGTCGCTAAAGCACTGAACATTAGCAGCACTTCCTAAAAAACGCCACTAAATCCC
9999600 CGAAAGCTCAGAAAACGACGTCATTGGGCTT-AG
196 CGAAAGC-CAGAAAACGACGTCATTGGGCTTAAG
* * *
9999633 TTTATTTTGCGGCGCTTTCTCAAAAATGCCGCTAAAGCCCTTAGCATTAGCGGCGCTTT-CTAAA
1 TTT-TTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCCTAAA
* * *
9999697 GAAACGCCGCTAAATCCCCGAAAACTCAGAAAACGGCGTCGTTAGGTTTATGT-TTCTTTGCGGC
65 -AAACGCCGCTAAATCCCCGAAAACTCAAAAAACGGCGTCGTTAGGCTTATGTCTT-TTTGCGAC
* * * * *
9999761 GCTTCCACAAAAACGTCGCTAAAGCACTGAACATTAGCAGCGCTTTCTAAAAAATGCCGCTAAGT
128 GCTTCCACAAAAACGTCGCTAAAGCACTGAACATTAGCAGCACTTCCTAAAAAACGCCACTAAAT
** *
9999826 CCCCGAAAGCCAGAAAACGGGGTCGTTGGGCTTAAG
193 CCCCGAAAGCCAGAAAACGACGTCATTGGGCTTAAG
*
9999862 TTTTTTTGCGGCGCTTTGTCAAAAACGCCGCTAAA
1 TTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAA
9999897 TCCACGAAAG
Statistics
Matches: 231, Mismatches: 29, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
228 60 0.26
229 171 0.74
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (228 bp):
TTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCCTAAAA
AACGCCGCTAAATCCCCGAAAACTCAAAAAACGGCGTCGTTAGGCTTATGTCTTTTTGCGACGCT
TCCACAAAAACGTCGCTAAAGCACTGAACATTAGCAGCACTTCCTAAAAAACGCCACTAAATCCC
CGAAAGCCAGAAAACGACGTCATTGGGCTTAAG
Found at i:9999892 original size:72 final size:73
Alignment explanation
Indices: 9999800--9999969 Score: 218
Period size: 73 Copynumber: 2.3 Consensus size: 73
9999790 AACATTAGCA
* * * * ** *
9999800 GCGCTTTCTAAAAAATGCCGCTAAGTCCCCGAAAGC-CAGAAAACGGGGTCGTTGGGCTTAAGTT
1 GCGCTTTCTCAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGACGTCGTTAGGCTTAAGTT
9999864 TTTTTGCG
66 TTTTTGCG
* * *
9999872 GCGCTTTGTCAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGACGTTGTTAGGCTTATGTT
1 GCGCTTTCTCAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGACGTCGTTAGGCTTAAGTT
9999937 TTTTTGCG
66 TTTTTGCG
*
9999945 GTGC-TTCTCAAAAAACGCCGCTAAA
1 GCGCTTTCTC-AAAAACGCCGCTAAA
9999970 GCCCTGGGCA
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
72 35 0.42
73 49 0.58
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (73 bp):
GCGCTTTCTCAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGACGTCGTTAGGCTTAAGTT
TTTTTGCG
Found at i:10000017 original size:186 final size:185
Alignment explanation
Indices: 9999682--10000081 Score: 545
Period size: 186 Copynumber: 2.1 Consensus size: 185
9999672 CTTAGCATTA
* * * *
9999682 GCGGCGCTTTCTAAAGAAACGCCGCTAAATCCCCGAAAACTCAGAAAACGGCGTCGTTAGGTTTA
1 GCGGCGCTTT-TCAA-AAACGCCGCTAAATCCACGAAAACTCAGAAAACGACGTCGTTAGGCTTA
*
9999747 TGTTTCTTTGCGGCGCTTCCACAAAAACGTCGCTAAAGCACTGAACATTAGCAGCGCTTTCTAAA
64 TGTTTCTTTGCGGCGCTTCCACAAAAACGCCGCTAAAGCACTGAACATTAGCAGCGCTTTCTAAA
* * * *
9999812 AAATGCCGCTAAGTCCCCGAAAGC-CAGAAAACGGGGTCGTTGGGCTTAAGTTTTTTT
129 AAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTT-AGGTTTTTT
* *
9999869 GCGGCGCTTTGTCAAAAACGCCGCTAAATCCACGAAAGCTCAGAAAACGACGTTGTTAGGCTTAT
1 GCGGCGCTTT-TCAAAAACGCCGCTAAATCCACGAAAACTCAGAAAACGACGTCGTTAGGCTTAT
* * * ** *
9999934 GTTTTTTTGCGGTGCTTCTCA-AAAAACGCCGCTAAAGCCCTGGGCATTAGCGGCGCTTTCCT-A
65 GTTTCTTTGCGGCGCTTC-CACAAAAACGCCGCTAAAGCACTGAACATTAGCAGCGCTTT-CTAA
9999997 AAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTT
128 AAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTT
* *
10000055 GCGGCGCTTTCCGGAAAACGCCGCTAA
1 GCGGCGCTTTTC-AAAAACGCCGCTAA
10000082 TGCTTATTTT
Statistics
Matches: 189, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
185 1 0.01
186 149 0.79
187 39 0.21
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (185 bp):
GCGGCGCTTTTCAAAAACGCCGCTAAATCCACGAAAACTCAGAAAACGACGTCGTTAGGCTTATG
TTTCTTTGCGGCGCTTCCACAAAAACGCCGCTAAAGCACTGAACATTAGCAGCGCTTTCTAAAAA
ACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTT
Found at i:10003362 original size:2 final size:2
Alignment explanation
Indices: 10003355--10003380 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10003345 TTAAATTTGT
10003355 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
10003381 AAATAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10004232 original size:117 final size:114
Alignment explanation
Indices: 10004104--10004321 Score: 339
Period size: 117 Copynumber: 1.9 Consensus size: 114
10004094 TCAATTAATT
* *
10004104 TCAATTTTATATTT-TATTTATTTATTTATTATTCTTTTACTTTTTAAATACCTAAATTTAATAT
1 TCAATTTTATATTTGT-TTTATTTATTTATTATTCTTTTACTTCTTAAAAACCTAAATTT-ATAT
* *
10004168 GATTTGCATTTGTTTTATCTATTTATTTATTATTCTTTTATTTTTTAAATACC
64 --TATGCATCTGTTTTATCTATTTATTTATTATTCTTTTATTTTTTAAATACC
*
10004221 TCAATTTTATATTTGTTTTATTTATTTATTATTCTTTTACTTCTTAAAAACTTAAATTTATATTA
1 TCAATTTTATATTTGTTTTATTTATTTATTATTCTTTTACTTCTTAAAAACCTAAATTTATATTA
*
10004286 TGTATCTGTTTTATCTATTTATTTATTATTCTTTTA
66 TGCATCTGTTTTATCTATTTATTTATTATTCTTTTA
10004322 CCTTTAAAAT
Statistics
Matches: 94, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
114 35 0.37
116 4 0.04
117 54 0.57
118 1 0.01
ACGTcount: A:0.27, C:0.08, G:0.03, T:0.62
Consensus pattern (114 bp):
TCAATTTTATATTTGTTTTATTTATTTATTATTCTTTTACTTCTTAAAAACCTAAATTTATATTA
TGCATCTGTTTTATCTATTTATTTATTATTCTTTTATTTTTTAAATACC
Found at i:10004279 original size:52 final size:51
Alignment explanation
Indices: 10004187--10004284 Score: 142
Period size: 52 Copynumber: 1.9 Consensus size: 51
10004177 TTGTTTTATC
* * * *
10004187 TATTTATTTATTATTCTTTTATTTTTTAAATACCTCAATTTTATATTTGTTT
1 TATTTATTTATTATTCTTTTACTTCTTAAAAACCT-AAATTTATATTTGTTT
*
10004239 TATTTATTTATTATTCTTTTACTTCTTAAAAACTTAAATTTATATT
1 TATTTATTTATTATTCTTTTACTTCTTAAAAACCTAAATTTATATT
10004285 ATGTATCTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
51 10 0.24
52 31 0.76
ACGTcount: A:0.29, C:0.08, G:0.01, T:0.62
Consensus pattern (51 bp):
TATTTATTTATTATTCTTTTACTTCTTAAAAACCTAAATTTATATTTGTTT
Found at i:10011562 original size:37 final size:37
Alignment explanation
Indices: 10011520--10011786 Score: 365
Period size: 37 Copynumber: 7.0 Consensus size: 37
10011510 TAGTTTTAGC
*
10011520 TACACTTATCTGATCAAGTGACAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAGACAAAGTGATAAGTGGT
* *
10011557 TACACTTATCTGATCAAGTGACAAAGTGATAAGT-GC
1 TACACTTATCTGATCAAGAGACAAAGTGATAAGTGGT
*
10011593 TAAACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTT
1 TACACTTATCTGATCAAGAGACAAAGTGATAAGT-G--G---T
*
10011636 AGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGC
1 ---TACACTTATCTGATCAAGAGACAAAGTGATAAGTGGT
*
10011676 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAGACAAAGTGATAAGTGGT
*
10011713 TACACTTATCTGATCAAGAGACAAAGTGATAAGTGGC
1 TACACTTATCTGATCAAGAGACAAAGTGATAAGTGGT
* *
10011750 TACACTTATCTGATCAAGTGATAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAGACAAAGTGATAAGTGGT
10011787 AGCTTCAGCT
Statistics
Matches: 207, Mismatches: 13, Indels: 20
0.86 0.05 0.08
Matches are distributed among these distances:
36 33 0.16
37 138 0.67
40 1 0.00
43 1 0.00
45 1 0.00
46 33 0.16
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (37 bp):
TACACTTATCTGATCAAGAGACAAAGTGATAAGTGGT
Found at i:10011586 original size:83 final size:80
Alignment explanation
Indices: 10011518--10011871 Score: 373
Period size: 74 Copynumber: 4.4 Consensus size: 80
10011508 GGTAGTTTTA
*
10011518 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT-G-G-T-TACACTTATCTGATCAAGTGAC
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGAGTTCTACACTTATCTGATCAAGTGAC
10011579 AAAGTGAT-A--AGT
66 AAAGTGATAAGTAGT
*
10011591 GCTAAACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAA
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGG-AG--TT--CTACACTTATCTGATCAA
*
10011656 GAGACAAAGTGATAAGT-G-
61 GTGACAAAGTGATAAGTAGT
* *
10011674 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGT-G-G-T-TACACTTATCTGATCAAGAGAC
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGAGTTCTACACTTATCTGATCAAGTGAC
10011735 AAAGTGATAAGT-G-
66 AAAGTGATAAGTAGT
* *
10011748 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCAGCTACACTTATCTGATCAA
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGG-AG-TT---CTACACTTATCTGATCAA
*
10011813 GTGGCAAAGTGATAAGTGGTAGCCT
61 GTGACAAAGTGATAA---GTAG--T
10011838 AGCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 -GCTACACTTATCTGATCAAGAGACAAAGTGATAAG
10011872 AGGTCATATG
Statistics
Matches: 241, Mismatches: 11, Indels: 42
0.82 0.04 0.14
Matches are distributed among these distances:
73 34 0.14
74 69 0.29
75 1 0.00
76 1 0.00
77 2 0.01
79 2 0.01
80 1 0.00
82 30 0.12
83 65 0.27
84 1 0.00
86 2 0.01
87 1 0.00
89 10 0.04
90 2 0.01
91 20 0.08
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (80 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGAGTTCTACACTTATCTGATCAAGTGAC
AAAGTGATAAGTAGT
Found at i:10011693 original size:119 final size:120
Alignment explanation
Indices: 10011482--10011748 Score: 455
Period size: 119 Copynumber: 2.2 Consensus size: 120
10011472 TTTGAGTACT
* * *
10011482 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
* **
10011547 GATAAGTGGTTACACTTATCTGATCAAGTGACAAAGTGATAAGT-GCTAAACTTA
66 GATAAGTGGCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGCTAAACTTA
10011601 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
* *
10011666 GATAAGTGGCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
66 GATAAGTGGCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGCTAAACTTA
10011721 TCTGATCAAGAGACAAAGTGATAAGTGG
1 TCTGATCAAGAGACAAAGTGATAAGTGG
10011749 CTACACTTAT
Statistics
Matches: 139, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
119 103 0.74
120 36 0.26
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.28
Consensus pattern (120 bp):
TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
GATAAGTGGCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGCTAAACTTA
Found at i:10011831 original size:157 final size:156
Alignment explanation
Indices: 10011518--10011831 Score: 538
Period size: 157 Copynumber: 2.0 Consensus size: 156
10011508 GGTAGTTTTA
** *
10011518 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTTACACTTATCTGATCAAGTGACAAAG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTATCTGATCAAGAGACAAAG
*
10011583 TGATAAGTGCTAAACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTAT
66 TGATAAGTGCTAAACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTCAGCTACACTTAT
10011648 CTGATCAAGAGACAAAGTGATAAGTG
131 CTGATCAAGAGACAAAGTGATAAGTG
10011674 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTATCTGATCAAGAGACAAAG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTATCTGATCAAGAGACAAAG
* * *
10011739 TGATAAGTGGCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCAGCTACACTTA
66 TGATAAGT-GCTAAACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTCAGCTACACTTA
* *
10011804 TCTGATCAAGTGGCAAAGTGATAAGTG
130 TCTGATCAAGAGACAAAGTGATAAGTG
10011831 G
1 G
10011832 TAGCCTAGCT
Statistics
Matches: 148, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
156 70 0.47
157 78 0.53
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (156 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTATCTGATCAAGAGACAAAG
TGATAAGTGCTAAACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTCAGCTACACTTAT
CTGATCAAGAGACAAAGTGATAAGTG
Found at i:10011857 original size:45 final size:46
Alignment explanation
Indices: 10011748--10011871 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
10011738 GTGATAAGTG
* *
10011748 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
10011794 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
10011839 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
10011872 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:10013668 original size:483 final size:483
Alignment explanation
Indices: 10012762--10013705 Score: 1888
Period size: 483 Copynumber: 2.0 Consensus size: 483
10012752 ACCCATCAAC
10012762 CTACACACCAAGTTAGTGGTCATGTACCACTGCATAATTTTGCAATCAAGCTGCTAGGTATAATG
1 CTACACACCAAGTTAGTGGTCATGTACCACTGCATAATTTTGCAATCAAGCTGCTAGGTATAATG
10012827 TAGAGATATCCGCCAGAACAGATGAACAGATTTTATGAGTAAACTGCCAGATTTATAGAATATAA
66 TAGAGATATCCGCCAGAACAGATGAACAGATTTTATGAGTAAACTGCCAGATTTATAGAATATAA
10012892 TCTGTCAGAATTTCCTCTGTACCACATTGTTAACCCACTCCAATACACATTCAACATCATAACTC
131 TCTGTCAGAATTTCCTCTGTACCACATTGTTAACCCACTCCAATACACATTCAACATCATAACTC
10012957 ATACTCAAATATATTCGGATTTATCATGCTCAATTGAGAACAAAGCAGATTAGAGACATGCTAAT
196 ATACTCAAATATATTCGGATTTATCATGCTCAATTGAGAACAAAGCAGATTAGAGACATGCTAAT
10013022 GGTGAAAACAGATTTACAGATCAGATATACAATTTACACGACTTAGCATGCTTTCAGAAAATTTA
261 GGTGAAAACAGATTTACAGATCAGATATACAATTTACACGACTTAGCATGCTTTCAGAAAATTTA
10013087 CATACAACAACAAGTATATCGGATAGTATCTATCAATCTACAAATGTAACCATTTAACAGACTTT
326 CATACAACAACAAGTATATCGGATAGTATCTATCAATCTACAAATGTAACCATTTAACAGACTTT
10013152 ACAATATCGCTAACCTCGAACCAACAACCCAAAACACAACCCTAGCTAAACTGTTCAACATGGGC
391 ACAATATCGCTAACCTCGAACCAACAACCCAAAACACAACCCTAGCTAAACTGTTCAACATGGGC
10013217 CCACACTGGCGCATGCGTGGCTGTGTGT
456 CCACACTGGCGCATGCGTGGCTGTGTGT
10013245 CTACACACCAAGTTAGTGGTCATGTACCACTGCATAATTTTGCAATCAAGCTGCTAGGTATAATG
1 CTACACACCAAGTTAGTGGTCATGTACCACTGCATAATTTTGCAATCAAGCTGCTAGGTATAATG
10013310 TAGAGATATCCGCCAGAACAGATGAACAGATTTTATGAGTAAACTGCCAGATTTATAGAATATAA
66 TAGAGATATCCGCCAGAACAGATGAACAGATTTTATGAGTAAACTGCCAGATTTATAGAATATAA
10013375 TCTGTCAGAATTTCCTCTGTACCACATTGTTAACCCACTCCAATACACATTCAACATCATAACTC
131 TCTGTCAGAATTTCCTCTGTACCACATTGTTAACCCACTCCAATACACATTCAACATCATAACTC
10013440 ATACTCAAATATATTCGGATTTATCATGCTCAATTGAGAACAAAGCAGATTAGAGACATGCTAAT
196 ATACTCAAATATATTCGGATTTATCATGCTCAATTGAGAACAAAGCAGATTAGAGACATGCTAAT
10013505 GGTGAAAACAGATTTACAGATCAGATATACAATTTACACGACTTAGCATGCTTTCAGAAAATTTA
261 GGTGAAAACAGATTTACAGATCAGATATACAATTTACACGACTTAGCATGCTTTCAGAAAATTTA
10013570 CATACAACAACAAGTATATCGGATAGTATCTATCAATCTACAAATGTAACCATTTAACAGACTTT
326 CATACAACAACAAGTATATCGGATAGTATCTATCAATCTACAAATGTAACCATTTAACAGACTTT
10013635 ACAATATCGCTAACCTCGAACCAACAACCCAAAACACAACCCTAGCTAAACTGTTCAACATGGGC
391 ACAATATCGCTAACCTCGAACCAACAACCCAAAACACAACCCTAGCTAAACTGTTCAACATGGGC
10013700 CCACAC
456 CCACAC
10013706 ACTAATAAGC
Statistics
Matches: 461, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
483 461 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (483 bp):
CTACACACCAAGTTAGTGGTCATGTACCACTGCATAATTTTGCAATCAAGCTGCTAGGTATAATG
TAGAGATATCCGCCAGAACAGATGAACAGATTTTATGAGTAAACTGCCAGATTTATAGAATATAA
TCTGTCAGAATTTCCTCTGTACCACATTGTTAACCCACTCCAATACACATTCAACATCATAACTC
ATACTCAAATATATTCGGATTTATCATGCTCAATTGAGAACAAAGCAGATTAGAGACATGCTAAT
GGTGAAAACAGATTTACAGATCAGATATACAATTTACACGACTTAGCATGCTTTCAGAAAATTTA
CATACAACAACAAGTATATCGGATAGTATCTATCAATCTACAAATGTAACCATTTAACAGACTTT
ACAATATCGCTAACCTCGAACCAACAACCCAAAACACAACCCTAGCTAAACTGTTCAACATGGGC
CCACACTGGCGCATGCGTGGCTGTGTGT
Found at i:10016369 original size:9 final size:9
Alignment explanation
Indices: 10016355--10016385 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
10016345 GTTAAACGAA
10016355 TCGAGTTAT
1 TCGAGTTAT
*
10016364 TCGAGTTAA
1 TCGAGTTAT
10016373 TCGAGTTAT
1 TCGAGTTAT
10016382 TCGA
1 TCGA
10016386 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:10017499 original size:5 final size:5
Alignment explanation
Indices: 10017489--10017514 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
10017479 CTCGAAAATT
10017489 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
10017515 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:10019121 original size:3 final size:3
Alignment explanation
Indices: 10019100--10019141 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
10019090 AATGGAAACC
* * *
10019100 ATA A-A ATA ATA TTA CTA ATA ATA ATA ATG ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
10019142 AGTTCAAGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:10022933 original size:22 final size:23
Alignment explanation
Indices: 10022890--10022935 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
10022880 AGAGCAACAA
*
10022890 AGAAATAGTAGAGAAACGATAGC
1 AGAAATAGTAGAGAAACAATAGC
10022913 AGAAAT-GTA-AGCAAACAATAGC
1 AGAAATAGTAGAG-AAACAATAGC
10022935 A
1 A
10022936 AAAAAAAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 2 0.10
22 13 0.62
23 6 0.29
ACGTcount: A:0.54, C:0.11, G:0.22, T:0.13
Consensus pattern (23 bp):
AGAAATAGTAGAGAAACAATAGC
Found at i:10023950 original size:23 final size:22
Alignment explanation
Indices: 10023919--10023971 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 22
10023909 TTTATATGAT
*
10023919 ATTATTTTATTTTCATTCATTTTA
1 ATTA-TTTATATTCATTCA-TTTA
*
10023943 TTTATTTATATTCATTCATTTA
1 ATTATTTATATTCATTCATTTA
10023965 ATTATTT
1 ATTATTT
10023972 CTTTACTCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 10 0.38
23 13 0.50
24 3 0.12
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (22 bp):
ATTATTTATATTCATTCATTTA
Found at i:10024146 original size:5 final size:5
Alignment explanation
Indices: 10024136--10024194 Score: 118
Period size: 5 Copynumber: 11.8 Consensus size: 5
10024126 GACTTGGTTT
10024136 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
10024186 TTATA TTAT
1 TTATA TTAT
10024195 TGTTATCTAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 54 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:10026912 original size:17 final size:17
Alignment explanation
Indices: 10026890--10026929 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
10026880 CTCATGTAAA
*
10026890 TTCAAATTTTTAAAAGG
1 TTCAAATTTTAAAAAGG
10026907 TTCAAATTTTAAAAAGG
1 TTCAAATTTTAAAAAGG
10026924 TTCAAA
1 TTCAAA
10026930 GCTAAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (17 bp):
TTCAAATTTTAAAAAGG
Found at i:10029767 original size:18 final size:18
Alignment explanation
Indices: 10029705--10029774 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 18
10029695 TGAACATACT
* *
10029705 TACATTTTTATTTTTTTA
1 TACATTTTTATATTTATA
* * *
10029723 CAGATTTTTAT-TTAATA
1 TACATTTTTATATTTATA
* *
10029740 TATATATTTATATTTATA
1 TACATTTTTATATTTATA
10029758 TACATTTTTATACTTTA
1 TACATTTTTATA-TTTA
10029775 CGATTTATAT
Statistics
Matches: 40, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
17 12 0.30
18 24 0.60
19 4 0.10
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.61
Consensus pattern (18 bp):
TACATTTTTATATTTATA
Found at i:10030340 original size:106 final size:106
Alignment explanation
Indices: 10030072--10030400 Score: 426
Period size: 106 Copynumber: 3.1 Consensus size: 106
10030062 AGGAAGGTTT
*
10030072 TTTCTAAA-TAAGGCAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCAGGGTT
1 TTTC-AAAGTAAGGCAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTT
*
10030136 TCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTTTAAAC
65 TCGATTTCTCGTTCGACCAAATAGCCAAATATCC-TTTTAAAA
* * * * * *
10030179 TTTTAAAATAAGGCAATATTTCGCGCTTGGAAAATCGAGGAAACGTGCCTTAACGTGTTGGGTTC
1 TTTCAAAGTAAGGCAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTT
* * * *
10030244 CGACTCCTTGTTTGACCAAATAGCCAAATATCCTTTTAAAA
66 CGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAA
* * * * *
10030285 TTTCAAAGTGAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAACGTGCTGGGTTT
1 TTTCAAAGTAAGGCAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTT
* * * * *
10030350 TGATTTCTCGTTCGACTAAATAGCTAAATACCCTCTTAAAA
66 CGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAA
*
10030391 CTTCAAAGTA
1 TTTCAAAGTA
10030401 TGGTTTCCCT
Statistics
Matches: 188, Mismatches: 33, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
106 104 0.55
107 84 0.45
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32
Consensus pattern (106 bp):
TTTCAAAGTAAGGCAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTT
CGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAA
Found at i:10040905 original size:11 final size:11
Alignment explanation
Indices: 10040891--10040929 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
10040881 AAAAAAAGGA
10040891 AAAAAGAAAAT
1 AAAAAGAAAAT
10040902 AAAAAGAAAAT
1 AAAAAGAAAAT
*
10040913 AAAAAAGGAAAT
1 -AAAAAGAAAAT
10040925 AAAAA
1 AAAAA
10040930 AAGGAGAGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 16 0.62
12 10 0.38
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.08
Consensus pattern (11 bp):
AAAAAGAAAAT
Found at i:10040905 original size:12 final size:12
Alignment explanation
Indices: 10040890--10040930 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
10040880 AAAAAAAAGG
10040890 AAAAAAGAAAAT
1 AAAAAAGAAAAT
10040902 -AAAAAGAAAAT
1 AAAAAAGAAAAT
*
10040913 AAAAAAGGAAAT
1 AAAAAAGAAAAT
10040925 AAAAAA
1 AAAAAA
10040931 AGGAGAGGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 11 0.41
12 16 0.59
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (12 bp):
AAAAAAGAAAAT
Found at i:10042459 original size:176 final size:176
Alignment explanation
Indices: 10041908--10042565 Score: 1020
Period size: 176 Copynumber: 3.7 Consensus size: 176
10041898 GTATTGGCGT
* * * *
10041908 GAAGTAGATCGAAGATGCAGATCTCGTCTTCCCATATTGGTGGCAAAGTAGATCGAAG-ATGCAG
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
* * *
10041972 ATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGAAGAAAGCAGATCTTGTCTTCATGTATTGG
66 ATCTTGTCTT-CCATAGTAGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG
* *
10042037 CGTGAAGTAGATCAAAGATAGTAGGTCCTATCTTCCTATATGGGTAG
130 CGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATGGGTAG
10042084 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
* *
10042149 ATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG
66 ATCTTGTCTT-CCATAGTAGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG
*
10042214 CGTGAAGTAGATCGAATATAGCAGGTCCTATCTTCCTATATGGGTAG
130 CGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATGGGTAG
10042261 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
* * *
10042326 ATCTTGTCTT-CAT-GTAATGGCATGAAGTAGATCGAAGATAGCAAATCTTGTCTTCATGTATTG
66 ATCTTGTCTTCCATAGTAGTGGC--GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTG
* *
10042389 GCATGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAG
129 GCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATGGGTAG
*
10042437 GAAGTGGGTCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
1 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
* * * * *
10042502 ATCTTGTCTT-CAT-GTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTG
66 ATCTTGTCTTCCATAGTAGTGGC--GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTG
10042565 G
129 G
10042566 TAGGAAGTGG
Statistics
Matches: 456, Mismatches: 23, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
174 5 0.01
175 3 0.01
176 260 0.57
177 188 0.41
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (176 bp):
GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAG
ATCTTGTCTTCCATAGTAGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
GTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATGGGTAG
Found at i:10042573 original size:44 final size:45
Alignment explanation
Indices: 10041880--10042573 Score: 698
Period size: 44 Copynumber: 15.8 Consensus size: 45
10041870 AAGTCATTAA
* * * *
10041880 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * *
10041924 -GCAGATCTCGTCTTCCCATATTGGTGGCAAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * *
10041968 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
10042012 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * * *
10042056 AGTAGGTCCTATCTTCCTATATGGGTAG-GAAGTGGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * *
10042100 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * *
10042144 AGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
10042189 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAATAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
10042233 AGCAGGTCCTATCTTCCTATATGGGTAG-GAAGTGGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * *
10042277 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
10042321 AGCAGATCTTGTCTTCATGTAATGGCA-TGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
10042365 AGCAAATCTTGTCTTCATGTATTGGCA-TGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * * *
10042409 AGCAGGTCCTATCTTCCTATATTGGTAG-GAAGTGGGTCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * *
10042453 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
* * * *
10042497 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
*
10042541 AGCAGATCCTGTCTTCCTATATTGGTAG-GAAGT
1 AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGT
10042574 GGATTGAAAA
Statistics
Matches: 539, Mismatches: 99, Indels: 24
0.81 0.15 0.04
Matches are distributed among these distances:
43 83 0.15
44 325 0.60
45 131 0.24
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (45 bp):
AGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT
Found at i:10044592 original size:19 final size:18
Alignment explanation
Indices: 10044570--10044620 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
10044560 ATTTTTTTAC
*
10044570 ATATTTTTATTTAATATAT
1 ATATTTATATTT-ATATAT
*
10044589 ATATTTATATTTATATAC
1 ATATTTATATTTATATAT
*
10044607 ATTTTTATACTTTA
1 ATATTTATA-TTTA
10044621 CGATTTATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 13 0.46
19 15 0.54
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (18 bp):
ATATTTATATTTATATAT
Found at i:10044613 original size:18 final size:18
Alignment explanation
Indices: 10044551--10044620 Score: 65
Period size: 18 Copynumber: 3.9 Consensus size: 18
10044541 TGAACATACT
*
10044551 TACATTTTTAT-TTT-TT
1 TACATTTTTATATTTATA
10044567 TACATATTTT-TATTTAATA
1 TACAT-TTTTATATTT-ATA
* *
10044586 TATATATTTATATTTATA
1 TACATTTTTATATTTATA
10044604 TACATTTTTATACTTTA
1 TACATTTTTATA-TTTA
10044621 CGATTTATAT
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
16 6 0.14
17 7 0.16
18 16 0.37
19 14 0.33
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (18 bp):
TACATTTTTATATTTATA
Found at i:10045109 original size:107 final size:105
Alignment explanation
Indices: 10044918--10045243 Score: 393
Period size: 106 Copynumber: 3.1 Consensus size: 105
10044908 AGGAAGGTTT
* *
10044918 TTTCTAAATAAGGCAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCAGGGTTT
1 TTTCAAAATAAGGCAATATTTCGCGTTT-GAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTT
* *
10044983 CGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTTTAAAC
65 CGATCTCTCGTTCGACCAAATAGCCAAATATCC-TTTTAAAA
* * *
10045025 TTTTAAAATAAGGCAATATTTCGCGTTTAGAAAATCGAGGAAACGTGCCTTAACGTGTTGGGTTT
1 TTTCAAAATAAGGCAATATTTCGCGTTT-GAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTT
* *
10045090 CGA-CTCATTGTTTGACCAAATAGCCAAATATCCTTTTAAAA
65 CGATCTC-TCGTTCGACCAAATAGCCAAATATCCTTTTAAAA
* * * * * *
10045131 TTTCAAAGTGAGGCAATATTTTGCGTTTGAAAATTCGAGAAAACATGCCCTAACATGCTGGGTTT
1 TTTCAAAATAAGGCAATATTTCGCGTTTGAAAA-TCGAGGAAACGTGCCCTAACGTGCTGGGTTT
* * * * * * *
10045196 TGATTTCTCATTCGACTAAATAGCTAAATACCCTCTTAAAA
65 CGATCTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAA
*
10045237 CTTCAAA
1 TTTCAAA
10045244 GTATGGTTTC
Statistics
Matches: 187, Mismatches: 29, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
105 5 0.03
106 94 0.50
107 88 0.47
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Consensus pattern (105 bp):
TTTCAAAATAAGGCAATATTTCGCGTTTGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTTC
GATCTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAA
Found at i:10045244 original size:106 final size:106
Alignment explanation
Indices: 10044926--10045246 Score: 403
Period size: 107 Copynumber: 3.0 Consensus size: 106
10044916 TTTTTCTAAA
* *
10044926 TAAGGCAATATTTCGCGTTTGGAAAATCGAGGAAACGTGCCCTAACGTGCAGGGTTTCGATTTCT
1 TAAGGCAATATTTCGCGTTTAGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTTCGATTTCT
* * *
10044991 CGTTCGACCAAATAGCCAAATATCCTTTTTAAACTTTTAAAA
66 CGTTCGACCAAATAGCCAAATATCCTTTTAAAAC-TTCAAAG
* * *
10045033 TAAGGCAATATTTCGCGTTTAGAAAATCGAGGAAACGTGCCTTAACGTGTTGGGTTTCGA-CTCA
1 TAAGGCAATATTTCGCGTTTAGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTTCGATTTC-
* * *
10045097 TTGTTTGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAG
65 TCGTTCGACCAAATAGCCAAATATCCTTTTAAAACTTCAAAG
* * * * * *
10045139 TGAGGCAATATTTTGCGTTT-GAAAATTCGAGAAAACATGCCCTAACATGCTGGGTTTTGATTTC
1 TAAGGCAATATTTCGCGTTTAGAAAA-TCGAGGAAACGTGCCCTAACGTGCTGGGTTTCGATTTC
* * * * *
10045203 TCATTCGACTAAATAGCTAAATACCCTCTTAAAACTTCAAAG
65 TCGTTCGACCAAATAGCCAAATATCCTTTTAAAACTTCAAAG
10045245 TA
1 TA
10045247 TGGTTTCCCT
Statistics
Matches: 182, Mismatches: 29, Indels: 7
0.83 0.13 0.03
Matches are distributed among these distances:
105 5 0.03
106 88 0.48
107 89 0.49
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (106 bp):
TAAGGCAATATTTCGCGTTTAGAAAATCGAGGAAACGTGCCCTAACGTGCTGGGTTTCGATTTCT
CGTTCGACCAAATAGCCAAATATCCTTTTAAAACTTCAAAG
Found at i:10045830 original size:3 final size:3
Alignment explanation
Indices: 10045822--10045990 Score: 79
Period size: 3 Copynumber: 53.7 Consensus size: 3
10045812 CATAGTGATC
* * *
10045822 ATA ATA ATA ACTA AGA ATA ATA ATAA ATA ATC ATA CATTA ATA ACCGA
1 ATA ATA ATA A-TA ATA ATA ATA AT-A ATA ATA ATA -A-TA ATA A--TA
* * * * * *
10045870 ATA ATA GTA GTAA ATAA ATAA ATA AGA GTA ATA TTA ATA ATA ATA ATG
1 ATA ATA ATA AT-A AT-A AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * * **
10045918 GTA GTA AAA ATA GTA ATA GTA ATA ACA GTA ATA ATA GTA ACG A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
10045965 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
10045991 TTGAAAATAT
Statistics
Matches: 125, Mismatches: 33, Indels: 16
0.72 0.19 0.09
Matches are distributed among these distances:
2 1 0.01
3 102 0.82
4 18 0.14
5 4 0.03
ACGTcount: A:0.59, C:0.04, G:0.08, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:10046091 original size:7 final size:7
Alignment explanation
Indices: 10046079--10046104 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
10046069 TACATATATA
10046079 TAAAAAC
1 TAAAAAC
10046086 TAAAAAC
1 TAAAAAC
10046093 TAAAAAC
1 TAAAAAC
10046100 TAAAA
1 TAAAA
10046105 TATAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.12, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAAAAC
Found at i:10046110 original size:14 final size:14
Alignment explanation
Indices: 10046076--10046111 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
10046066 ATATACATAT
10046076 ATATAAAAACTAAA
1 ATATAAAAACTAAA
10046090 A-ACTAAAAACTAAA
1 ATA-TAAAAACTAAA
10046104 ATATAAAA
1 ATATAAAA
10046112 TATAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 1 0.05
14 18 0.90
15 1 0.05
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.19
Consensus pattern (14 bp):
ATATAAAAACTAAA
Found at i:10046171 original size:4 final size:4
Alignment explanation
Indices: 10046162--10046187 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
10046152 AATAATGATG
10046162 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
10046188 AGGGAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:10056586 original size:3 final size:3
Alignment explanation
Indices: 10056580--10056644 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
10056570 ACTTTTACCA
10056580 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
10056628 TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TA
10056645 AGGAATTGAC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:10060616 original size:14 final size:15
Alignment explanation
Indices: 10060599--10060631 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
10060589 ACCTTGATGT
10060599 ATGATAT-AGTTAAA
1 ATGATATAAGTTAAA
*
10060613 ATGATATAATTTAAA
1 ATGATATAAGTTAAA
10060628 ATGA
1 ATGA
10060632 ATTTGTAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (15 bp):
ATGATATAAGTTAAA
Found at i:10060703 original size:17 final size:17
Alignment explanation
Indices: 10060673--10060709 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
10060663 ATGAAGAAAT
*
10060673 ATTATAATAGTAATAAC
1 ATTATAATAATAATAAC
*
10060690 ATTATTATAATAATAAC
1 ATTATAATAATAATAAC
10060707 ATT
1 ATT
10060710 GACATTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (17 bp):
ATTATAATAATAATAAC
Found at i:10060838 original size:30 final size:29
Alignment explanation
Indices: 10060797--10060864 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 29
10060787 ATGATTTTTT
* * *
10060797 AAAAA-AAATAAACATATCATGAAAATATC
1 AAAAATAAATAAACAAATAAT-AAAATAAC
*
10060826 AAAAATAAATAAAGAAATAATAAAATAAC
1 AAAAATAAATAAACAAATAATAAAATAAC
10060855 AATAAATAAA
1 AA-AAATAAA
10060865 AATAATATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 14 0.42
30 19 0.58
ACGTcount: A:0.72, C:0.06, G:0.03, T:0.19
Consensus pattern (29 bp):
AAAAATAAATAAACAAATAATAAAATAAC
Found at i:10061294 original size:15 final size:15
Alignment explanation
Indices: 10061274--10061312 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
10061264 TAAAATTTCA
10061274 TCCAAATTAAAAACT
1 TCCAAATTAAAAACT
10061289 TCCAAATTAAAAACT
1 TCCAAATTAAAAACT
*
10061304 TTCAAATTA
1 TCCAAATTA
10061313 TTATCTTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (15 bp):
TCCAAATTAAAAACT
Found at i:10063731 original size:21 final size:22
Alignment explanation
Indices: 10063689--10063731 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
10063679 TTCATGACAA
*
10063689 AAACAAAGAGAAACACTTACCG
1 AAACAAAGAGAAACACTAACCG
*
10063711 AAACAAAGA-AAGCACTAACCG
1 AAACAAAGAGAAACACTAACCG
10063732 CGTGCGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.56, C:0.23, G:0.14, T:0.07
Consensus pattern (22 bp):
AAACAAAGAGAAACACTAACCG
Found at i:10065020 original size:51 final size:50
Alignment explanation
Indices: 10064889--10065311 Score: 388
Period size: 51 Copynumber: 8.8 Consensus size: 50
10064879 AGGGTTTGTC
* * *
10064889 GCTTTAATCTGCTCCACTACAATTTCAGAGAAAT-A-ATAT-T-A--GTA
1 GCTTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGTAACTGTA
* ** * *
10064933 GCTTTAATCTGCTCCATTGTAATTTTCA-GGAGATAAGATTTGTAACTCGTA
1 GCTTTAATCTGCTCCACTACAA-CTTCAGGGAAATAAGATTTGTAACT-GTA
* *
10064984 GCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTG--A---TA
1 GCTTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGTAACTGTA
* * *
10065029 TCTTTAATCTGCTCCGCTACAACTTCAGGGAGATAAGATTTGTAACTTGTA
1 GCTTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGTAAC-TGTA
* *
10065080 GCTTTAATCTGCTCCACTACAACTTTAGAGAAATAAGA--T-T-A--GTA
1 GCTTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGTAACTGTA
* ** *
10065124 GCTTTAATCTGCTCCACTATAACTTTTGGGAGATAAGATTTGTAACTCGTA
1 GCTTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGTAACT-GTA
* *
10065175 GCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTG--A---TA
1 GCTTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGTAACTGTA
* * *
10065220 TCTTTAATCTGCTCCTCTACAACTTCAGGGAGATAAGATTTGTAACTTGTA
1 GCTTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGTAAC-TGTA
* * * *
10065271 GCTTTAATCTGTTCCATTGCAACTGCAGGGAAATAAGATTT
1 GCTTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTT
10065312 TCTATCTTTA
Statistics
Matches: 308, Mismatches: 43, Indels: 49
0.77 0.11 0.12
Matches are distributed among these distances:
44 60 0.19
45 84 0.27
46 4 0.01
47 5 0.02
48 3 0.01
49 3 0.01
50 4 0.01
51 145 0.47
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (50 bp):
GCTTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGTAACTGTA
Found at i:10065081 original size:96 final size:95
Alignment explanation
Indices: 10064884--10065359 Score: 621
Period size: 96 Copynumber: 5.0 Consensus size: 95
10064874 GGTACAGGGT
* * * * * * * *
10064884 TTGTCGCTTTAATCTGCTCCACTACAATTTCAGAGAAATAATATTAGTAGCTTTAATCTGCTCCA
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTATCTTTAATCTGCTCCA
* * *
10064949 TTGTAATTTTCA-GGAGATAAGATTTGTAAC
66 CTATAA-CTTCAGGGAGATAAGATTTGTAAC
*
10064979 TCGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGATATCTTTAATCTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTG-TATCTTTAATCTGCTCC
* *
10065044 GCTACAACTTCAGGGAGATAAGATTTGTAAC
65 ACTATAACTTCAGGGAGATAAGATTTGTAAC
* * * * * *
10065075 TTGTAGCTTTAATCTGCTCCACTACAACTTTAGAGAAATAAGATTAGTAGCTTTAATCTGCTCCA
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTATCTTTAATCTGCTCCA
**
10065140 CTATAACTTTTGGGAGATAAGATTTGTAAC
66 CTATAACTTCAGGGAGATAAGATTTGTAAC
*
10065170 TCGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGATATCTTTAATCTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTG-TATCTTTAATCTGCTCC
* *
10065235 TCTACAACTTCAGGGAGATAAGATTTGTAAC
65 ACTATAACTTCAGGGAGATAAGATTTGTAAC
* * * *
10065266 TTGTAGCTTTAATCTGTTCCATTGCAACTGCAGGGAAATAAGATTTTCTATCTTTAATCTGCTCT
1 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGA-TTTGTATCTTTAATCTGCTCC
* * *
10065331 GCTGTAACTTCAAGGAGATAAGATTTGTA
65 ACTATAACTTCAGGGAGATAAGATTTGTA
10065360 GCTTCAATCT
Statistics
Matches: 332, Mismatches: 45, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
95 127 0.38
96 202 0.61
97 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.36
Consensus pattern (95 bp):
TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTATCTTTAATCTGCTCCA
CTATAACTTCAGGGAGATAAGATTTGTAAC
Found at i:10065148 original size:44 final size:45
Alignment explanation
Indices: 10064889--10065488 Score: 435
Period size: 44 Copynumber: 12.9 Consensus size: 45
10064879 AGGGTTTGTC
* * * *
10064889 GCTTTAATCTGCTCCACTACAATTTCAGAGAAATAATA-TTAGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTAGTA
* * * *
10064933 GCTTTAATCTGCTCCATTGTAATTTTCA-GGAGATAAGATTTGTAACTCGTA
1 GCTTTAATCTGCTCCACTGCAA-CTTCAGGGAAATAAGA-TT-T-A---GTA
*
10064984 GCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTT-GATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTAG-TA
* * * *
10065029 TCTTTAATCTGCTCCGCTACAACTTCAGGGAGATAAGATTTGTAACTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGA-TT-T-A---GTA
* * *
10065080 GCTTTAATCTGCTCCACTACAACTTTAGAGAAATAAGA-TTAGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTAGTA
** ** *
10065124 GCTTTAATCTGCTCCACTATAACTTTTGGGAGATAAGATTTGTAACTCGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGA-TT-T-A---GTA
*
10065175 GCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTT-GATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTAG-TA
* * * *
10065220 TCTTTAATCTGCTCCTCTACAACTTCAGGGAGATAAGATTTGTAACTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGA-TT-T-A---GTA
* * * **
10065271 GCTTTAATCTGTTCCATTGCAACTGCAGGGAAATAAGATTTTCTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTAGTA
* ** * * *
10065316 TCTTTAATCTGCTCTGCTGTAACTTCAAGGAGATAAGATTT-GTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTAGTA
* * ** * * *
10065360 GCTTCAATCTACTCTGCTGCAATTTTAGGGAGATAAGATTTA-TA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTAGTA
* *
10065404 GCTTCAATCTACTCCACTGCAACTTCA-GGAAGATAAGATTT-GTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAA-ATAAGATTTAGTA
* * * *
10065448 GTTTTAATCTGCTCCATTGCAAATTCAGGGAGATAAGATTT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTT
10065489 GCCACGATGA
Statistics
Matches: 447, Mismatches: 73, Indels: 72
0.76 0.12 0.12
Matches are distributed among these distances:
43 3 0.01
44 168 0.38
45 112 0.25
46 6 0.01
47 5 0.01
48 3 0.01
49 4 0.01
50 10 0.02
51 134 0.30
52 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (45 bp):
GCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTTAGTA
Found at i:10065213 original size:191 final size:191
Alignment explanation
Indices: 10064884--10065359 Score: 740
Period size: 191 Copynumber: 2.5 Consensus size: 191
10064874 GGTACAGGGT
* *
10064884 TTGTCGCTTTAATCTGCTCCACTACAA-TTTCAGAGAAATAATATTAGTAGCTTTAATCTGCTCC
1 TTGTAGCTTTAATCTGCTCCACTACAACTTT-AGAGAAATAAGATTAGTAGCTTTAATCTGCTCC
*
10064948 ATTGTAA-TTTTCAGGAGATAAGATTTGTAACTCGTAGCTTTAATCTGTTCCACTGCAACTTCAG
65 ACTGTAACTTTT-AGGAGATAAGATTTGTAACTCGTAGCTTTAATCTGTTCCACTGCAACTTCAG
10065012 GGAAATAAGATTTGATATCTTTAATCTGCTCCGCTACAACTTCAGGGAGATAAGATTTGTAAC
129 GGAAATAAGATTTGATATCTTTAATCTGCTCCGCTACAACTTCAGGGAGATAAGATTTGTAAC
10065075 TTGTAGCTTTAATCTGCTCCACTACAACTTTAGAGAAATAAGATTAGTAGCTTTAATCTGCTCCA
1 TTGTAGCTTTAATCTGCTCCACTACAACTTTAGAGAAATAAGATTAGTAGCTTTAATCTGCTCCA
* *
10065140 CTATAACTTTTGGGAGATAAGATTTGTAACTCGTAGCTTTAATCTGTTCCACTGCAACTTCAGGG
66 CTGTAACTTTTAGGAGATAAGATTTGTAACTCGTAGCTTTAATCTGTTCCACTGCAACTTCAGGG
*
10065205 AAATAAGATTTGATATCTTTAATCTGCTCCTCTACAACTTCAGGGAGATAAGATTTGTAAC
131 AAATAAGATTTGATATCTTTAATCTGCTCCGCTACAACTTCAGGGAGATAAGATTTGTAAC
* * * ** * ** * *
10065266 TTGTAGCTTTAATCTGTTCCATTGCAACTGCAGGGAAATAAGATTTTCTATCTTTAATCTGCTCT
1 TTGTAGCTTTAATCTGCTCCACTACAACTTTAGAGAAATAAGA-TTAGTAGCTTTAATCTGCTCC
* **
10065331 GCTGTAACTTCAAGGAGATAAGATTTGTA
65 ACTGTAACTTTTAGGAGATAAGATTTGTA
10065360 GCTTCAATCT
Statistics
Matches: 261, Mismatches: 21, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
191 213 0.82
192 48 0.18
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.36
Consensus pattern (191 bp):
TTGTAGCTTTAATCTGCTCCACTACAACTTTAGAGAAATAAGATTAGTAGCTTTAATCTGCTCCA
CTGTAACTTTTAGGAGATAAGATTTGTAACTCGTAGCTTTAATCTGTTCCACTGCAACTTCAGGG
AAATAAGATTTGATATCTTTAATCTGCTCCGCTACAACTTCAGGGAGATAAGATTTGTAAC
Found at i:10075405 original size:17 final size:17
Alignment explanation
Indices: 10075375--10075411 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
10075365 ATGAAGAAAT
*
10075375 ATTATAATAGTAATAAC
1 ATTATAATAATAATAAC
*
10075392 ATTATTATAATAATAAC
1 ATTATAATAATAATAAC
10075409 ATT
1 ATT
10075412 GACATTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (17 bp):
ATTATAATAATAATAAC
Found at i:10075561 original size:30 final size:29
Alignment explanation
Indices: 10075517--10075576 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 29
10075507 ACATATCATG
*
10075517 AAAATATCAAAAATAAATAAT-AAAATAAT
1 AAAATAACAAAAATAAA-AATAAAAATAAT
10075546 AAAATAACAAGAAATAAAAATAAAAATAAT
1 AAAATAACAA-AAATAAAAATAAAAATAAT
10075576 A
1 A
10075577 TAATGATGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 12 0.43
30 16 0.57
ACGTcount: A:0.75, C:0.03, G:0.02, T:0.20
Consensus pattern (29 bp):
AAAATAACAAAAATAAAAATAAAAATAAT
Found at i:10075687 original size:12 final size:12
Alignment explanation
Indices: 10075653--10075687 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
10075643 AGAAAAAAGT
10075653 AATAAACAAATA
1 AATAAACAAATA
*
10075665 AATGAACAAATA
1 AATAAACAAATA
*
10075677 AATAAATAAAT
1 AATAAACAAAT
10075688 CAACTTGTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.71, C:0.06, G:0.03, T:0.20
Consensus pattern (12 bp):
AATAAACAAATA
Found at i:10078483 original size:28 final size:30
Alignment explanation
Indices: 10078448--10078509 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
10078438 TAATAATGGT
* *
10078448 AAATTTTTAGTATAATTT-TTTAAAA-TATA
1 AAATTTTGA-TATAATTTATTAAAAATTATA
*
10078477 AAATTTTGATTTAATTTATTAAAAATTATA
1 AAATTTTGATATAATTTATTAAAAATTATA
10078507 AAA
1 AAA
10078510 ATATAATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 7 0.25
29 14 0.50
30 7 0.25
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (30 bp):
AAATTTTGATATAATTTATTAAAAATTATA
Found at i:10078519 original size:30 final size:28
Alignment explanation
Indices: 10078460--10078519 Score: 66
Period size: 30 Copynumber: 2.1 Consensus size: 28
10078450 ATTTTTAGTA
* * * *
10078460 TAATTTTTTAAAATATAAAATTTTGATT
1 TAATTTTTAAAAATATAAAAATATAATT
10078488 TAATTTATTAAAAATTATAAAAATATAATT
1 TAATTT-TTAAAAA-TATAAAAATATAATT
10078518 TA
1 TA
10078520 TTAAAATGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 6 0.23
29 6 0.23
30 14 0.54
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (28 bp):
TAATTTTTAAAAATATAAAAATATAATT
Found at i:10081610 original size:44 final size:44
Alignment explanation
Indices: 10081562--10082152 Score: 168
Period size: 44 Copynumber: 13.1 Consensus size: 44
10081552 AAGGTATATG
*
10081562 ATTTGTCACTTCAATCTGCTCTAATGCAACTTCAGCGAAATAA-A
1 ATTTGT-ACTTCAATCTGCTCCAATGCAACTTCAGCGAAATAAGA
* * * *
10081606 ATTTGTAACTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGA
1 ATTTGT-ACTTCAATCTGCTCCAATGCAACTTCAGCGAAATAAGA
** * * * * * *
10081651 A-TTGTAGCTTCAATCAACTCCATTACTACTTAAGGGAGATAAG-
1 ATTTGTA-CTTCAATCTGCTCCAATGCAACTTCAGCGAAATAAGA
* * * * * *
10081694 ATTTGTAGCTTGTAGCTTTAATTTGTTCCACTACAACTTCAGAGAAATAGGA
1 ATTTGTA-C-T-T--C---AATCTGCTCCAATGCAACTTCAGCGAAATAAGA
* * * * * ** ** *
10081746 CTCGCTATGGTAGATTTAATCTGAC-CCATTACAACTTCAAAGGTAT-AGG
1 AT---T-T-GTA-CTTCAATCTG-CTCCAATGCAACTTCAGCGAAATAAGA
* * * * *
10081795 ATTTGTCGCTTCAATTTGCTCTATTGCAACTTCAGCGAGATAAG-
1 ATTTGT-ACTTCAATCTGCTCCAATGCAACTTCAGCGAAATAAGA
* * * *
10081839 ATTTGTAGCTTCAATCTGCTCCACTGCAATTTCAGAGAGATAAG-
1 ATTTGTA-CTTCAATCTGCTCCAATGCAACTTCAGCGAAATAAGA
* * * *
10081883 ATTTGTTGCTTCAATCTGCTCCACTGCTACTTCAAG-GAGATAAG-
1 ATTTG-TACTTCAATCTGCTCCAATGCAACTTC-AGCGAAATAAGA
* * * * * * * *
10081927 ATCTGTAACTTTAATATGCTTCACTGCAACTTTAGGGAGATAAG-
1 ATTTGT-ACTTCAATCTGCTCCAATGCAACTTCAGCGAAATAAGA
* * * * *
10081971 ATTTGTAACTTCAATATGCTCCACTGCCACTTCAGGGAGATAAG-
1 ATTTGT-ACTTCAATCTGCTCCAATGCAACTTCAGCGAAATAAGA
* * * * * *
10082015 ATTTATAACTTCAATCTGCTCCATTGTAACTTTAGGGAGATAAG-
1 ATTTGT-ACTTCAATCTGCTCCAATGCAACTTCAGCGAAATAAGA
* * * * * *
10082059 ATTTGTAACTCCAATTTGCTCCACTACAACTTCAGGGAGATAAG-
1 ATTTGT-ACTTCAATCTGCTCCAATGCAACTTCAGCGAAATAAGA
* * * * * *
10082103 ATTTGTAGCCTC-ATCTTGCTCCATTGCATCTTTAGGGAGATAAG-
1 ATTTGTA-CTTCAATC-TGCTCCAATGCAACTTCAGCGAAATAAGA
10082147 ATTTGT
1 ATTTGT
10082153 TATATTCAAT
Statistics
Matches: 434, Mismatches: 86, Indels: 54
0.76 0.15 0.09
Matches are distributed among these distances:
43 9 0.02
44 358 0.82
45 9 0.02
46 2 0.00
48 1 0.00
49 2 0.00
50 22 0.05
51 22 0.05
52 1 0.00
55 2 0.00
56 2 0.00
57 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (44 bp):
ATTTGTACTTCAATCTGCTCCAATGCAACTTCAGCGAAATAAGA
Found at i:10081789 original size:233 final size:233
Alignment explanation
Indices: 10081397--10081937 Score: 737
Period size: 233 Copynumber: 2.3 Consensus size: 233
10081387 TCTACTTCGT
* * * * ** *
10081397 TGCAACTTCAAAGAGATAAG-ATTCCTAGCTTTAATCTGCTCCACTGCTACTTCAAGGAGATAAG
1 TGCAATTTCAGAGAGATAAGAATT-GTAGCTTCAATCAACTCCACTACTACTTCAAGGAGATAAG
* * * *
10081461 ATTTGTAACTTGTAACTTTATTCTGTTCCACTGCAACTTTAGGGAAATAAGACTCGTTATGGTAG
65 ATTTGTAACTTGTAACTTTATTCTGTTCCACTACAACTTCAGAGAAATAAGACTCGCTATGGTAG
* *
10081526 ATTTAATCCGACCCACTGCAACTCCAAAGGTATATGATTTGTCACTTCAATCTGCTCTAATGCAA
130 ATTTAATCCGACCCACTACAACTCCAAAGGTATAGGATTTGTCACTTCAATCTGCTCTAATGCAA
10081591 CTTCAGCGAAATAAAATTTGTAACTTCAATCTGCTCCAC
195 CTTCAGCGAAATAAAATTTGTAACTTCAATCTGCTCCAC
* *
10081630 TGCAATTTCAGGGAGATAAGAATTGTAGCTTCAATCAACTCCATTACTACTT-AAGGGAGATAAG
1 TGCAATTTCAGAGAGATAAGAATTGTAGCTTCAATCAACTCCACTACTACTTCAA-GGAGATAAG
* * *
10081694 ATTTGTAGCTTGTAGCTTTAATT-TGTTCCACTACAACTTCAGAGAAATAGGACTCGCTATGGTA
65 ATTTGTAACTTGTAACTTT-ATTCTGTTCCACTACAACTTCAGAGAAATAAGACTCGCTATGGTA
* * * * * *
10081758 GATTTAATCTGACCCATTACAACTTCAAAGGTATAGGATTTGTCGCTTCAATTTGCTCTATTGCA
129 GATTTAATCCGACCCACTACAACTCCAAAGGTATAGGATTTGTCACTTCAATCTGCTCTAATGCA
* * *
10081823 ACTTCAGCGAGATAAGATTTGTAGCTTCAATCTGCTCCAC
194 ACTTCAGCGAAATAAAATTTGTAACTTCAATCTGCTCCAC
* * ** *
10081863 TGCAATTTCAGAGAGATAAGATTTGTTGCTTCAATCTGCTCCACTGCTACTTCAAGGAGATAAGA
1 TGCAATTTCAGAGAGATAAGAATTGTAGCTTCAATCAACTCCACTACTACTTCAAGGAGATAAGA
*
10081928 TCTGTAACTT
66 TTTGTAACTT
10081938 TAATATGCTT
Statistics
Matches: 268, Mismatches: 36, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
232 2 0.01
233 258 0.96
234 8 0.03
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (233 bp):
TGCAATTTCAGAGAGATAAGAATTGTAGCTTCAATCAACTCCACTACTACTTCAAGGAGATAAGA
TTTGTAACTTGTAACTTTATTCTGTTCCACTACAACTTCAGAGAAATAAGACTCGCTATGGTAGA
TTTAATCCGACCCACTACAACTCCAAAGGTATAGGATTTGTCACTTCAATCTGCTCTAATGCAAC
TTCAGCGAAATAAAATTTGTAACTTCAATCTGCTCCAC
Found at i:10081894 original size:88 final size:88
Alignment explanation
Indices: 10081561--10082152 Score: 474
Period size: 88 Copynumber: 6.6 Consensus size: 88
10081551 AAAGGTATAT
* * * * * * * *
10081561 GATTTGTCACTTCAATCTGCTCTAATGCAACTTCAGCGAAATAAAATTTGTAACTTCAATCTGCT
1 GATTTGTAACTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAACTTCAATTTGCT
*
10081626 CCACTGCAATTTCAGGGAGATAA
66 CCACTGCAACTTCAGGGAGATAA
* * ** * * * * *
10081649 GAATTGTAGCTTCAATCAACTCCATTACTACTTAAGGGAGATAAGATTTGTAGCTTGTAGCTTTA
1 GATTTGTAACTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTA------A-CTTCA
* * * * *
10081714 ATTTGTTCCACTACAACTTCAGAGAAATAG
59 ATTTGCTCCACTGCAACTTCAGGGAGATAA
* * * * * * * **
10081744 GACTCGCTATGGTAGA-TTTAATCTGAC-CCATTACAACTTCAAAGG-TATAGGATTTGTCGCTT
1 GA-T---T-T-GTA-ACTTCAATCTG-CTCCACTGCAACTT-TAGGGAGATAAGATTTGTAACTT
* * *
10081806 CAATTTGCTCTATTGCAACTTCAGCGAGATAA
57 CAATTTGCTCCACTGCAACTTCAGGGAGATAA
* * ** *
10081838 GATTTGTAGCTTCAATCTGCTCCACTGCAA-TTTCAGAGAGATAAGATTTGTTGCTTCAATCTGC
1 GATTTGTAACTTCAATCTGCTCCACTGCAACTTT-AGGGAGATAAGATTTGTAACTTCAATTTGC
* *
10081902 TCCACTGCTACTTCAAGGAGATAA
65 TCCACTGCAACTTCAGGGAGATAA
* * * * *
10081926 GATCTGTAACTTTAATATGCTTCACTGCAACTTTAGGGAGATAAGATTTGTAACTTCAATATGCT
1 GATTTGTAACTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAACTTCAATTTGCT
*
10081991 CCACTGCCACTTCAGGGAGATAA
66 CCACTGCAACTTCAGGGAGATAA
* * * *
10082014 GATTTATAACTTCAATCTGCTCCATTGTAACTTTAGGGAGATAAGATTTGTAACTCCAATTTGCT
1 GATTTGTAACTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAACTTCAATTTGCT
*
10082079 CCACTACAACTTCAGGGAGATAA
66 CCACTGCAACTTCAGGGAGATAA
* * * *
10082102 GATTTGTAGCCTC-ATCTTGCTCCATTGCATCTTTAGGGAGATAAGATTTGT
1 GATTTGTAACTTCAATC-TGCTCCACTGCAACTTTAGGGAGATAAGATTTGT
10082153 TATATTCAAT
Statistics
Matches: 399, Mismatches: 83, Indels: 44
0.76 0.16 0.08
Matches are distributed among these distances:
87 8 0.02
88 289 0.72
89 4 0.01
90 1 0.00
93 1 0.00
94 30 0.08
95 29 0.07
99 1 0.00
100 1 0.00
101 30 0.08
102 5 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (88 bp):
GATTTGTAACTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAACTTCAATTTGCT
CCACTGCAACTTCAGGGAGATAA
Found at i:10081968 original size:132 final size:131
Alignment explanation
Indices: 10081819--10082192 Score: 432
Period size: 132 Copynumber: 2.8 Consensus size: 131
10081809 TTTGCTCTAT
* *
10081819 TGCAACTTCAGCGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAATTTCAGAGAGATAAGA
1 TGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGC-ATTTCAGGGAGATAAGA
* ** *
10081884 TTTGTTGCTTCAATCTGCTCCACTGCT-ACTTCAAGGAGATAAGATCTGTAACTTTAATATGCTT
65 TTTGTTACTTCAATCTGCTCCACTG-TAACTTCAAGGAGATAAGATCTGTAACTCCAATATGCTC
10081948 CAC
129 CAC
* * * *
10081951 TGCAACTTTAGGGAGATAAGATTTGTAACTTCAATATGCTCCACTGCCACTTCAGGGAGATAAGA
1 TGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTG-CATTTCAGGGAGATAAGA
* * * * * * *
10082016 TTTATAACTTCAATCTGCTCCATTGTAACTTTAGGGAGATAAGATTTGTAACTCCAATTTGCTCC
65 TTTGTTACTTCAATCTGCTCCACTGTAACTTCAAGGAGATAAGATCTGTAACTCCAATATGCTCC
10082081 AC
130 AC
* * * *
10082083 TACAACTTCAGGGAGATAAGATTTGTAGCCTC-ATCTTGCTCCATTGCATCTTTAGGGAGATAAG
1 TGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATC-TGCTCCACTGCAT-TTCAGGGAGATAAG
* * *
10082147 ATTTGTTATATTCAATCTAAC-CCATTGTAACTTCAAGG-GTATAAGA
64 ATTTGTTA-CTTCAATCT-GCTCCACTGTAACTTCAAGGAG-ATAAGA
10082193 ATTGTGGTTT
Statistics
Matches: 204, Mismatches: 31, Indels: 13
0.82 0.12 0.05
Matches are distributed among these distances:
131 5 0.02
132 168 0.82
133 30 0.15
134 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.33
Consensus pattern (131 bp):
TGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCATTTCAGGGAGATAAGAT
TTGTTACTTCAATCTGCTCCACTGTAACTTCAAGGAGATAAGATCTGTAACTCCAATATGCTCCA
C
Found at i:10093684 original size:19 final size:21
Alignment explanation
Indices: 10093660--10093700 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
10093650 TAAGCGAATT
*
10093660 TTAACAA-AATTATTA-TTAA
1 TTAACAACAATAATTACTTAA
10093679 TTAACAACAATAATTACTTAA
1 TTAACAACAATAATTACTTAA
10093700 T
1 T
10093701 AATGTTAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 7 0.37
21 5 0.26
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (21 bp):
TTAACAACAATAATTACTTAA
Found at i:10093749 original size:20 final size:20
Alignment explanation
Indices: 10093713--10093750 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
10093703 TGTTAGTAAT
*
10093713 ATCAATAATTAAAAATAAGG
1 ATCAATAATAAAAAATAAGG
10093733 ATCAA-AATAAAATAATAA
1 ATCAATAATAAAA-AATAA
10093751 AAAATTAGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (20 bp):
ATCAATAATAAAAAATAAGG
Found at i:10093941 original size:29 final size:30
Alignment explanation
Indices: 10093884--10093941 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
10093874 GAATAAAGGA
*
10093884 CTAAATTAAAAATATAACAAAACTAAAAGC
1 CTAAATTAAAAAGATAACAAAACTAAAAGC
* * *
10093914 CTAAATTATAAAGA-AACGAAACTTAAAG
1 CTAAATTAAAAAGATAACAAAACTAAAAG
10093942 GATTAAATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 12 0.50
30 12 0.50
ACGTcount: A:0.60, C:0.12, G:0.07, T:0.21
Consensus pattern (30 bp):
CTAAATTAAAAAGATAACAAAACTAAAAGC
Found at i:10098084 original size:11 final size:11
Alignment explanation
Indices: 10098034--10098091 Score: 55
Period size: 11 Copynumber: 5.1 Consensus size: 11
10098024 TTTTAAAGTA
10098034 AAAATAAAAA-
1 AAAATAAAAAT
*
10098044 AGAATAGAAAAT
1 AAAATA-AAAAT
*
10098056 AAAATAAAAGGGT
1 AAAATAAAA--AT
*
10098069 AAAATTAAAAT
1 AAAATAAAAAT
10098080 AAAATAAAAAT
1 AAAATAAAAAT
10098091 A
1 A
10098092 TAGGGACCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
10 5 0.13
11 19 0.50
12 5 0.13
13 9 0.24
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.17
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:10099632 original size:94 final size:95
Alignment explanation
Indices: 10099515--10099968 Score: 480
Period size: 94 Copynumber: 4.8 Consensus size: 95
10099505 GCTCCATTGT
* * * * *
10099515 AACTTCAAGGAAATAAGATTCGTTGTTGTAATTTCAATCCGACCCACTGTAACTTCAAGGGTATA
1 AACTTCAGGGAGATAAGATTCGTTATGGTAATTTCAATCCGACCCACTGCAACTTCAAGGGTATA
10099580 GGATTTGTAG-TCTC-ATCTTGCTC-ACTAC
66 GGATTTGTAGCT-TCAATCTTGCTCTACTAC
* *
10099608 AACTTCAGGGAGATAAAGATTCGTTATGGTAACTTCAATCCGACCCACTGCAACTTCAGGGGTAT
1 AACTTCAGGGAGAT-AAGATTCGTTATGGTAATTTCAATCCGACCCACTGCAACTTCAAGGGTAT
* * * * *
10099673 AAGATTTGTAACTTCAATC-TACT-TCACCAT
65 AGGATTTGTAGCTTCAATCTTGCTCT-ACTAC
* * * *
10099703 AACTTCAGGGAGATAAGATTCGCTATGGTAATTTCAATTCGA--CACAGCAACTTCAAAGGTATA
1 AACTTCAGGGAGATAAGATTCGTTATGGTAATTTCAATCCGACCCACTGCAACTTCAAGGGTATA
*
10099766 GGATTTGTAGCTTCAAT-TTGCTCTACTGC
66 GGATTTGTAGCTTCAATCTTGCTCTACTAC
* * * * *
10099795 AACTTTAGGGAGATAAGATTCATTATGGTAGA-TTCAATACGACCCACTACAATTTCAAGGGTAT
1 AACTTCAGGGAGATAAGATTCGTTATGGTA-ATTTCAATCCGACCCACTGCAACTTCAAGGGTAT
* *
10099859 AGGATCTGTAGCTTC-ATCTTGCTCTACTGC
65 AGGATTTGTAGCTTCAATCTTGCTCTACTAC
* ** * * * * * *
10099889 AACTTCAGAGAGATAAGATTCACTATGGTGGA-TGCAATCTGACCCACTACAACTTTAAGGGTGT
1 AACTTCAGGGAGATAAGATTCGTTATGGT-AATTTCAATCCGACCCACTGCAACTTCAAGGGTAT
*
10099953 AAGATTTGTAGCTTCA
65 AGGATTTGTAGCTTCA
10099969 CTGATCTGTT
Statistics
Matches: 303, Mismatches: 45, Indels: 24
0.81 0.12 0.06
Matches are distributed among these distances:
92 74 0.24
93 16 0.05
94 192 0.63
95 21 0.07
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.31
Consensus pattern (95 bp):
AACTTCAGGGAGATAAGATTCGTTATGGTAATTTCAATCCGACCCACTGCAACTTCAAGGGTATA
GGATTTGTAGCTTCAATCTTGCTCTACTAC
Found at i:10099840 original size:186 final size:187
Alignment explanation
Indices: 10099514--10099917 Score: 471
Period size: 186 Copynumber: 2.2 Consensus size: 187
10099504 TGCTCCATTG
* * * * * * * *
10099514 TAACTTCAAGGAAATAAGATTCGTTGTTGTAATTTCAATCCGACCCACTGTAACTTCAAGGGTAT
1 TAACTTCAGGGAGATAAGATTCGCTATGGTAATTTCAATCCGA-CCACAGCAACTTCAAAGGTAT
*
10099579 AGGATTTGTAGTCTCATCTTGCTCACTACAACTTCAGGGAGATAAAGATTCGTTATGGTAACTTC
65 AGGATTTGTAGTCTCATCTTGCTCACTACAACTTCAGGGAGATAAAGATTCATTATGGTAACTTC
* * * *
10099644 AATCCGACCCACTGCAACTTCAGGGGTATAAGATTTGTAACTTCAATC-TACT-TCACCA
130 AATACGACCCACTACAACTTCAAGGGTATAAGATCTGTAACTTC-ATCTTACTCT-ACCA
*
10099702 TAACTTCAGGGAGATAAGATTCGCTATGGTAATTTCAATTCGA-CACAGCAACTTCAAAGGTATA
1 TAACTTCAGGGAGATAAGATTCGCTATGGTAATTTCAATCCGACCACAGCAACTTCAAAGGTATA
* *
10099766 GGATTTGTAG-CTTCAAT-TTGCTCTACTGCAACTTTAGGGAGAT-AAGATTCATTATGGTAGA-
66 GGATTTGTAGTC-TC-ATCTTGCTC-ACTACAACTTCAGGGAGATAAAGATTCATTATGGTA-AC
* * * * **
10099827 TTCAATACGACCCACTACAATTTCAAGGGTATAGGATCTGTAGCTTCATCTTGCTCTACTG
127 TTCAATACGACCCACTACAACTTCAAGGGTATAAGATCTGTAACTTCATCTTACTCTACCA
* * *
10099888 CAACTTCAGAGAGATAAGATTCACTATGGT
1 TAACTTCAGGGAGATAAGATTCGCTATGGT
10099918 GGATGCAATC
Statistics
Matches: 185, Mismatches: 25, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
185 4 0.02
186 123 0.66
187 21 0.11
188 37 0.20
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (187 bp):
TAACTTCAGGGAGATAAGATTCGCTATGGTAATTTCAATCCGACCACAGCAACTTCAAAGGTATA
GGATTTGTAGTCTCATCTTGCTCACTACAACTTCAGGGAGATAAAGATTCATTATGGTAACTTCA
ATACGACCCACTACAACTTCAAGGGTATAAGATCTGTAACTTCATCTTACTCTACCA
Found at i:10116782 original size:50 final size:50
Alignment explanation
Indices: 10116679--10116871 Score: 224
Period size: 50 Copynumber: 3.7 Consensus size: 50
10116669 GGGAATGAGA
*
10116679 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATGAGAGG
* *
10116735 TCCCATGAAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
** * * * **
10116785 TCCCCCGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* *
10116835 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
10116872 GTACAGAAAA
Statistics
Matches: 119, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
50 80 0.67
53 3 0.03
55 1 0.01
56 35 0.29
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:10117137 original size:12 final size:12
Alignment explanation
Indices: 10117120--10117158 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
10117110 ATGAGTTATT
10117120 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
10117132 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
10117144 TAAGTGAGTAAG
1 TAAGTAAGCAAG
10117156 TAA
1 TAA
10117159 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:10125282 original size:2 final size:2
Alignment explanation
Indices: 10125275--10125311 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
10125265 AGTGTTCTAG
10125275 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
10125312 AGGTCTTGGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.51, T:0.49
Consensus pattern (2 bp):
GT
Found at i:10125627 original size:6 final size:6
Alignment explanation
Indices: 10125616--10125643 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
10125606 GGATTTAAAA
10125616 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
10125644 TCCTACAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTAT
Found at i:10128011 original size:12 final size:11
Alignment explanation
Indices: 10127982--10128020 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
10127972 TAACCACATA
*
10127982 AATAATAAAAT
1 AATAATACAAT
*
10127993 AATAATACTAT
1 AATAATACAAT
10128004 AATGAATACAAT
1 AAT-AATACAAT
10128016 AATAA
1 AATAA
10128021 AAATGGTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.28
Consensus pattern (11 bp):
AATAATACAAT
Found at i:10128375 original size:11 final size:11
Alignment explanation
Indices: 10128300--10128382 Score: 51
Period size: 11 Copynumber: 7.2 Consensus size: 11
10128290 AACAGGGGAC
* *
10128300 TAAATTAAAAC
1 TAAAATAAAAA
* *
10128311 TATAATAAAATT
1 TAAAATAAAA-A
*
10128323 TAAAGTAAAAA
1 TAAAATAAAAA
10128334 T-AAATAAGAACA
1 TAAAATAA-AA-A
*
10128346 TAAAATAAAAGGG
1 TAAAATAAAA--A
*
10128359 TAAAATTAAAA
1 TAAAATAAAAA
10128370 TAAAATAAAAA
1 TAAAATAAAAA
10128381 TA
1 TA
10128383 TACGACCAAA
Statistics
Matches: 55, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
10 5 0.09
11 23 0.42
12 12 0.22
13 15 0.27
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.24
Consensus pattern (11 bp):
TAAAATAAAAA
Found at i:10142419 original size:18 final size:19
Alignment explanation
Indices: 10142398--10142457 Score: 61
Period size: 20 Copynumber: 3.2 Consensus size: 19
10142388 ATGCATATGG
10142398 AAATTATAAAGTATATA-A
1 AAATTATAAAGTATATATA
*
10142416 AAA-TATATATGTATATATA
1 AAATTATA-AAGTATATATA
* *
10142435 TAAATTGTAAAATATATATA
1 -AAATTATAAAGTATATATA
10142455 AAA
1 AAA
10142458 AAAAATATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
17 4 0.12
18 11 0.32
19 4 0.12
20 12 0.35
21 3 0.09
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (19 bp):
AAATTATAAAGTATATATA
Found at i:10142440 original size:38 final size:40
Alignment explanation
Indices: 10142379--10142495 Score: 100
Period size: 38 Copynumber: 2.9 Consensus size: 40
10142369 TATAAATATG
* *
10142379 TATATATGTATGCATATGGAAATTATAAAGTATATA-AAAA
1 TATATATGTAT-CATATAGAAATTATAAAATATATATAAAA
* *
10142419 TATATATGTAT-ATATATAAATTGTAAAATATATATAAAAAAA
1 TATATATGTATCATATAGAAATTATAAAATATATAT---AAAA
* *
10142461 AATATATGTGT-ATAT-G-AATTATAAAAATATATATA
1 TATATATGTATCATATAGAAATTAT-AAAATATATATA
10142496 TGTAAAAATG
Statistics
Matches: 64, Mismatches: 8, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
38 20 0.31
40 16 0.25
41 11 0.17
42 17 0.27
ACGTcount: A:0.53, C:0.01, G:0.09, T:0.38
Consensus pattern (40 bp):
TATATATGTATCATATAGAAATTATAAAATATATATAAAA
Found at i:10142453 original size:40 final size:41
Alignment explanation
Indices: 10142409--10142495 Score: 104
Period size: 40 Copynumber: 2.1 Consensus size: 41
10142399 AATTATAAAG
* * * *
10142409 TATATAAAAATATATATGTATATATATAAATTGT-AAAATA
1 TATATAAAAAAAAATATATATATATATAAATTATAAAAATA
* * *
10142449 TATATAAAAAAAAATATATGTGTATATGAATTATAAAAATA
1 TATATAAAAAAAAATATATATATATATAAATTATAAAAATA
10142490 TATATA
1 TATATA
10142496 TGTAAAAATG
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 27 0.69
41 12 0.31
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (41 bp):
TATATAAAAAAAAATATATATATATATAAATTATAAAAATA
Found at i:10142686 original size:2 final size:2
Alignment explanation
Indices: 10142679--10142737 Score: 118
Period size: 2 Copynumber: 29.5 Consensus size: 2
10142669 ATATGCATGG
10142679 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10142721 AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT A
10142738 ATTGAATCTA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:10143615 original size:5 final size:5
Alignment explanation
Indices: 10143605--10143636 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
10143595 CCGTATGTAA
10143605 AAAAT AAAAT -AAAT -AAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
10143637 GTAGACTACA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 8 0.31
5 18 0.69
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:10156050 original size:6 final size:6
Alignment explanation
Indices: 10156039--10156074 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
10156029 ATCCTATTTC
10156039 ATTTTT ATTTTT ATTTTT ATTTTT ATCCTTTT ATTT
1 ATTTTT ATTTTT ATTTTT ATTTTT AT--TTTT ATTT
10156075 CATCCTTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 22 0.79
8 6 0.21
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.78
Consensus pattern (6 bp):
ATTTTT
Found at i:10159436 original size:19 final size:19
Alignment explanation
Indices: 10159412--10159450 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
10159402 TAAGGCTGTA
* *
10159412 TATGTAAATATATTTGTTT
1 TATGTAAAGAGATTTGTTT
10159431 TATGTAAAGAGATTTGTTT
1 TATGTAAAGAGATTTGTTT
10159450 T
1 T
10159451 CTATTAAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (19 bp):
TATGTAAAGAGATTTGTTT
Found at i:10167031 original size:3 final size:3
Alignment explanation
Indices: 10167023--10167102 Score: 151
Period size: 3 Copynumber: 26.7 Consensus size: 3
10167013 CCACTCATCT
10167023 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
10167071 TAA TAA TAA TAA TAA TAA TAA TAA TTA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
10167103 CTTACCTCAC
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 75 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:10167870 original size:15 final size:14
Alignment explanation
Indices: 10167846--10167882 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 14
10167836 ATTCATTTGC
10167846 TTTCTTTTATTTTA
1 TTTCTTTTATTTTA
10167860 TTTCATTTTATTTTA
1 TTTC-TTTTATTTTA
10167875 TTTACTTT
1 TTT-CTTT
10167883 ATGTTGTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 4 0.19
15 16 0.76
16 1 0.05
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTCTTTTATTTTA
Found at i:10168196 original size:17 final size:17
Alignment explanation
Indices: 10168174--10168206 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
10168164 TCTTTTAATT
10168174 TAATAATAAATAATAAC
1 TAATAATAAATAATAAC
10168191 TAATAATAAATAATAA
1 TAATAATAAATAATAA
10168207 ATATCTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (17 bp):
TAATAATAAATAATAAC
Found at i:10168209 original size:21 final size:21
Alignment explanation
Indices: 10168185--10168227 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
10168175 AATAATAAAT
10168185 AATAACTAATAATAAATAATA
1 AATAACTAATAATAAATAATA
* * * *
10168206 AATATCTTATACTAATTAATA
1 AATAACTAATAATAAATAATA
10168227 A
1 A
10168228 GCAAATTAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (21 bp):
AATAACTAATAATAAATAATA
Found at i:10168328 original size:3 final size:3
Alignment explanation
Indices: 10168320--10168394 Score: 75
Period size: 3 Copynumber: 25.7 Consensus size: 3
10168310 TTACTTTATT
**
10168320 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA -AA CCA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
** *
10168366 TGGT TAA TAA TTA TAA TAA TAA TAA -AA TA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA
10168395 TTTATGTATA
Statistics
Matches: 59, Mismatches: 9, Indels: 8
0.78 0.12 0.11
Matches are distributed among these distances:
2 6 0.10
3 52 0.88
4 1 0.02
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:10170563 original size:44 final size:44
Alignment explanation
Indices: 10170500--10171037 Score: 355
Period size: 44 Copynumber: 12.1 Consensus size: 44
10170490 TATCATGGAG
* * *
10170500 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * * *
10170544 AATCTTATCTCCCTAAAGTTACAATGGAGCAGATTGAAGATAGCA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTA-CA
* * * * * *
10170589 AATCTTATCTCTCTGAAGTTGCCGTAGAGTAGATTAAAGATACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * * * * **
10170633 AACCTTATCTCTCTGAAA-TTGTAGTGAAACAGATTGAAA-CGGCA
1 AATCTTATCTCCCT-AAAGTTGCAGTGGAGCAGATT-AAAGCTACA
* ** *
10170677 ATTCTTATCTCCCT-GGGTTGCAGTGGAGTAGATTAAAGCTACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * *
10170720 AATCTTATTTCCCTGAAA-CTGCAGTGGAACAGATTAAAGCTACAAATTTA
1 AATCTTATCTCCCT-AAAGTTGCAGTGGAGCAGATTAAAGCTAC------A
* * * * ** *
10170770 AATATTATCTCCCTAAAGTTACAGTGGAGTAGATTGAATATACG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * * ** * *
10170814 AGTCTCATGTCTTTAAAGTTGCAGTGGAGTAGATTAAAGTTACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * * *
10170858 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGTTACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * * * * * * * *
10170902 AATCTCATCTCCCTGAATTTGTAGTGAAGTAGATTGAAGATACG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * ** *
10170946 AGTCTCATCTCCCCGAAGTTGTAGTGGAGCAGATTAAAGCTACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * * * * * * *
10170990 AGTCTAATCTCTCTTAAGTTACAGTAGAGCAGATTGAAGCAACA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACA
10171034 AATC
1 AATC
10171038 CTATACCTTT
Statistics
Matches: 380, Mismatches: 100, Indels: 28
0.75 0.20 0.06
Matches are distributed among these distances:
42 3 0.01
43 28 0.07
44 274 0.72
45 41 0.11
49 3 0.01
50 31 0.08
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACA
Found at i:10170720 original size:87 final size:89
Alignment explanation
Indices: 10170445--10171060 Score: 379
Period size: 88 Copynumber: 6.9 Consensus size: 89
10170435 ATCAATGAAA
* * * * *
10170445 CTACAAATCCTATAC-CCCTGAAGTTGCAGTGGGACGGATTGAAGTTATCATGGAGAATCTTATC
1 CTACAAATCTTAT-CTCCCTGAAATTGCAGTGGAACAGATTGAAG--A-CA-GCA-AATCTTATC
* *
10170509 TCCCTGAAGTTGCAGTGGAGCAAATTAAAG
60 TCCCTGAAGTTGCAGTGGAGTAGATTAAAG
* * * * * *
10170539 CCACAAATCTTATCTCCCT-AAAGTTACAATGGAGCAGATTGAAGATAGCAAATCTTATCTCTCT
1 CTACAAATCTTATCTCCCTGAAA-TTGCAGTGGAACAGATTGAAGACAGCAAATCTTATCTCCCT
* *
10170603 GAAGTTGCCGTAGAGTAGATTAAAG
65 GAAGTTGCAGTGGAGTAGATTAAAG
* * * * * * *
10170628 ATACAAACCTTATCTCTCTGAAATTGTAGTGAAACAGATTGAA-ACGGCAATTCTTATCTCCCTG
1 CTACAAATCTTATCTCCCTGAAATTGCAGTGGAACAGATTGAAGACAGCAAATCTTATCTCCCTG
*
10170692 -GGTTGCAGTGGAGTAGATTAAAG
66 AAGTTGCAGTGGAGTAGATTAAAG
* * * ** *
10170715 CTACAAATCTTATTTCCCTGAAACTGCAGTGGAACAGATTAAAGCTACAAATTTAAATATTATCT
1 CTACAAATCTTATCTCCCTGAAATTGCAGTGGAACAGATTGAAG--AC--A-GCAAATCTTATCT
* * * *
10170780 CCCTAAAGTTACAGTGGAGTAGATTGAAT
61 CCCTGAAGTTGCAGTGGAGTAGATTAAAG
* * * * * * * ** * **
10170809 ATACGAGTCTCATGT-CTTTAAAGTTGCAGTGGAGTAGATTAAAGTTA-CAAATCTTATCTCCCT
1 CTACAAATCTTATCTCCCTGAAA-TTGCAGTGGAACAGATTGAAGACAGCAAATCTTATCTCCCT
* * *
10170872 GAAGTTGCAGTAGAGCAGATTGAAG
65 GAAGTTGCAGTGGAGTAGATTAAAG
* * * * * * * * * *
10170897 TTACAAATCTCATCTCCCTGAATTTGTAGT-GAAGTAGATTGAAGATA-CGAGTCTCATCTCCCC
1 CTACAAATCTTATCTCCCTGAAATTGCAGTGGAA-CAGATTGAAGACAGCAAATCTTATCTCCCT
* *
10170960 GAAGTTGTAGTGGAGCAGATTAAAG
65 GAAGTTGCAGTGGAGTAGATTAAAG
* * * * * * * * * * **
10170985 CTACAAGTCTAATCTCTCTTAAGTTACAGTAGAGCAGATTGAAG-CAACAAATCCTATAC-CTTT
1 CTACAAATCTTATCTCCCTGAAATTGCAGTGGAACAGATTGAAGACAGCAAATCTTAT-CTCCCT
10171048 GAAGTTGCAGTGG
65 GAAGTTGCAGTGG
10171061 GTTAGAATGA
Statistics
Matches: 401, Mismatches: 105, Indels: 38
0.74 0.19 0.07
Matches are distributed among these distances:
87 58 0.14
88 163 0.41
89 71 0.18
90 8 0.02
91 1 0.00
92 1 0.00
93 21 0.05
94 78 0.19
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (89 bp):
CTACAAATCTTATCTCCCTGAAATTGCAGTGGAACAGATTGAAGACAGCAAATCTTATCTCCCTG
AAGTTGCAGTGGAGTAGATTAAAG
Found at i:10170990 original size:132 final size:131
Alignment explanation
Indices: 10170550--10171037 Score: 431
Period size: 132 Copynumber: 3.7 Consensus size: 131
10170540 CACAAATCTT
* * * * * * *
10170550 ATCTCCCTAAAGTTACAATGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCCGTA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CAAATCTTATCTCCCTGAAGTTGCAGTA
* * * * ** ** * *
10170615 GAGTAGATTAAAGATACAAACCTTATCTCTCTGAAATTGTAGTGAAACAGATTGAAACGGCAATT
65 GAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAATTGTAGTGAAGTAGATTGAAA-TACGAGT
*
10170680 CTT
129 CTC
* * * ** *
10170683 ATCTCCCTG-GGTTGCAGTGGAGTAGATTAAAGCTACAAATCTTATTTCCCTGAAACTGCAGTGG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTAG
* * ** *
10170747 AACAGATTAAAGCTACAAATTTAAATATTATCTCCCT-AAAGTTACAGTGGAGTAGATTGAATAT
66 AGCAGATTAAAGCTAC------AAATCTTATCTCCCTGAAA-TTGTAGTGAAGTAGATTGAA-AT
10170811 ACGAGTCTC
123 ACGAGTCTC
* ** * * *
10170820 ATGTCTTTAAAGTTGCAGTGGAGTAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTGCAGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTAG
* * * *
10170885 AGCAGATTGAAGTTACAAATCTCATCTCCCTGAATTTGTAGTGAAGTAGATTGAAGATACGAGTC
66 AGCAGATTAAAGCTACAAATCTTATCTCCCTGAAATTGTAGTGAAGTAGATTGAA-ATACGAGTC
10170950 TC
130 TC
* * * * * * *
10170952 ATCTCCCCGAAGTTGTAGTGGAGCAGATTAAAGCTACAAGTCTAATCTCTCTTAAGTTACAGTAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTAG
* *
10171017 AGCAGATTGAAGCAACAAATC
66 AGCAGATTAAAGCTACAAATC
10171038 CTATACCTTT
Statistics
Matches: 281, Mismatches: 64, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
131 36 0.13
132 132 0.47
133 10 0.04
136 3 0.01
137 37 0.13
138 63 0.22
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (131 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTAG
AGCAGATTAAAGCTACAAATCTTATCTCCCTGAAATTGTAGTGAAGTAGATTGAAATACGAGTCT
C
Found at i:10171683 original size:2 final size:2
Alignment explanation
Indices: 10171678--10171713 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
10171668 AATTGTTATT
10171678 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10171714 AAATAAAAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.