Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55868233
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 983842 characters in sequence are not A, C, G, or T
File 32 of 187
Found at i:10172721 original size:12 final size:11
Alignment explanation
Indices: 10172702--10172741 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
10172692 TTACAAAATT
10172702 TTATTTATTTA
1 TTATTTATTTA
10172713 TTCATTTATTTA
1 TT-ATTTATTTA
10172725 TTACTTTATTT-
1 TTA-TTTATTTA
10172736 TTATTT
1 TTATTT
10172742 TTATTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
10 3 0.11
11 6 0.22
12 18 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTTATTTA
Found at i:10173735 original size:19 final size:19
Alignment explanation
Indices: 10173708--10173744 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
10173698 TCCATTCTTC
* *
10173708 ATTTTAAAATAAAAAGTTG
1 ATTTAAAAAAAAAAAGTTG
10173727 ATTTAAAAAAAAAAAGTT
1 ATTTAAAAAAAAAAAGTT
10173745 TTCGACAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.32
Consensus pattern (19 bp):
ATTTAAAAAAAAAAAGTTG
Found at i:10180156 original size:3 final size:3
Alignment explanation
Indices: 10180148--10180216 Score: 138
Period size: 3 Copynumber: 23.0 Consensus size: 3
10180138 ATTAAATGGA
10180148 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
10180196 TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT
10180217 GCTCTATTTG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:10180834 original size:2 final size:2
Alignment explanation
Indices: 10180829--10180855 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10180819 ATAAAAAATT
10180829 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
10180856 TGCATTGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10183995 original size:50 final size:50
Alignment explanation
Indices: 10183876--10183999 Score: 126
Period size: 50 Copynumber: 2.5 Consensus size: 50
10183866 TTGTCGCTTC
* * * *
10183876 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTAGTAGCTTATAGCTTT
1 AATCTGATCCACTGCAACTTCAGGGAAATAAGA-TAGTAGCTTATAGATTT
* * * * *
10183927 AGTGTGTTCCACTACAACTTCAGGGAAAT-AGA-AGTTGCTATAGTAGATTT
1 AATCTGATCCACTGCAACTTCAGGGAAATAAGATAGTAGCT-TA-TAGATTT
10183977 AATCTGATCCACTGCAACTTCAG
1 AATCTGATCCACTGCAACTTCAG
10184000 AGGTATAAGA
Statistics
Matches: 59, Mismatches: 12, Indels: 5
0.78 0.16 0.07
Matches are distributed among these distances:
48 6 0.10
49 2 0.03
50 28 0.47
51 23 0.39
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (50 bp):
AATCTGATCCACTGCAACTTCAGGGAAATAAGATAGTAGCTTATAGATTT
Found at i:10184159 original size:89 final size:90
Alignment explanation
Indices: 10183977--10184957 Score: 715
Period size: 89 Copynumber: 10.8 Consensus size: 90
10183967 TAGTAGATTT
* * * * *
10183977 AATCTGATCCACTGCAACTTCAGAG-GTATAAGATT-TGTCGCTTCAAGCTACTTCACTGCAACT
1 AATCTGCTCCACTGCAACTTCAGAGAG-ATAAGATTATGTAGCTTTAATCTACTCCACTGCAACT
*** *
10184040 TCAGGGAGATAAGGCCTG-TAACTTC
65 TCAGGGAGATAAGATTTGCTATCTTC
* * * * * *
10184065 AATCTGCTCCACTGCAACTTCAGAGAGATAAGCTTCAT-TACCTTCAATCTGCTCCACTACCACT
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATT-ATGTAGCTTTAATCTACTCCACTGCAACT
* * *
10184129 TTAGGGAGATAAGATTTGTTA-CTTT
65 TCAGGGAGATAAGATTTGCTATCTTC
* * * *
10184154 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTATAACTTGTAGCTTTAATCTATTCCACTA
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGA--T-T-A--TGTAGCTTTAATCTACTCCACTG
* * * *
10184219 CAACTTTAGGGAAATGAGATTAGCTATCTTC
60 CAACTTCAGGGAGATAAGATTTGCTATCTTC
* * * * * *
10184250 AATCTACTCTACTTCAACTTCAGAGAAATAAGATT-TGTAGCTTTAA-CTTCCTCCAATGCAACT
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTATGTAGCTTTAATC-TACTCCACTGCAACT
*
10184313 TCAGGGAGATGAA-ATTTG-TGA-CTTT
65 TCAGGGAGAT-AAGATTTGCT-ATCTTC
** * * * *
10184338 AATCTTTTCCACTGCCACTTCAGA-AGCATAGGATTTGTGACTTGTAACTTTAATCTATTCCACT
1 AATCTGCTCCACTGCAACTTCAGAGAG-ATAAGA--T-T-A--TGTAGCTTTAATCTACTCCACT
* * * *
10184402 GTAACTTTAGGGAAATAAGATTCGC-ATCTTC
59 GCAACTTCAGGGAGATAAGATTTGCTATCTTC
* * * * * * *
10184433 AACCTGCTCCATTGCAACTTCAGGGAGATAAGATT-TATAGCTTTAATCTACACTACTGTAACTT
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTATGTAGCTTTAATCTACTCCACTGCAACTT
* *
10184497 CAGAGAGATAAGATTTACTATCTTC
66 CAGGGAGATAAGATTTGCTATCTTC
** * * * * * *
10184522 AATCTTTTCCATTGCAACTTCA-AGCAAATAAGA-TATATAGCTTTAATCTGCTCTACTCCAACT
1 AATCTGCTCCACTGCAACTTCAGAG-AGATAAGATTATGTAGCTTTAATCTACTCCACTGCAACT
*
10184585 TCAGAGAGATAAGATTTGCTATCTTC
65 TCAGGGAGATAAGATTTGCTATCTTC
** * * * * * **
10184611 AATCTTTTCCACTGCAACTTCAGGGAGATAAGATTTTCTATCTTCAATCTTTTCCACTGCAACTT
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTATGTAGCTTTAATCTACTCCACTGCAACTT
** * *
10184676 CAGATAGATAAGATTT-ATAAT-TTT
66 CAGGGAGATAAGATTTGCT-ATCTTC
** * * ** *
10184700 AATCTGCTATACTGCAACTTCAGAGAGATAAGATT-TGATATCTTCAATCTGTTCCACTGCAGCT
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTATG-TAGCTTTAATCTACTCCACTGCAACT
*
10184764 TCAGGGAGATAAGATTT-ATATCTTC
65 TCAGGGAGATAAGATTTGCTATCTTC
* * * * **
10184789 AATCTACCCCACTGCCACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTG
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGA--T-T-A--TGTAGCTTTAATCTACTCCACTG
* * *
10184854 CAACTTCAGGGAAATAAGATTCGCTATCTTT
60 CAACTTCAGGGAGATAAGATTTGCTATCTTC
* * * * *
10184885 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGTATCTTTAATATACTCTACTGCAACTT
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTATGTAGCTTTAATCTACTCCACTGCAACTT
10184949 CAGGGAGAT
66 CAGGGAGAT
10184958 GAAATTCGTG
Statistics
Matches: 716, Mismatches: 134, Indels: 85
0.77 0.14 0.09
Matches are distributed among these distances:
87 1 0.00
88 102 0.14
89 346 0.48
90 46 0.06
91 3 0.00
92 4 0.01
93 3 0.00
94 5 0.01
95 135 0.19
96 71 0.10
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (90 bp):
AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTATGTAGCTTTAATCTACTCCACTGCAACTT
CAGGGAGATAAGATTTGCTATCTTC
Found at i:10184351 original size:184 final size:183
Alignment explanation
Indices: 10184126--10184907 Score: 468
Period size: 184 Copynumber: 4.3 Consensus size: 183
10184116 CTCCACTACC
* * * *
10184126 ACTTTAGGGAGATAAGATTTGTTACTTTAATCTGCTCCACTGCAACTTTAGGGAG-ATAAGATTT
1 ACTTCAGGGAGATAAGATTTGTGACTTTAATCTGCTCCACTGCAACTTCA-GAAGCATAAGATTT
* * *
10184190 ATAACTTGTAGCTTTAATCTATTCCACTACAACTTTAGGGAAATGAGATTAGCTATCTTCAATCT
65 ATAACTTGTAACTTTAATCTATTCCACTACAACTTTAGGGAAATAAGATTAGC-ATCTTCAACCT
* *
10184255 ACTCTACTT-CAACTTCAGAGAAATAAGATTTGTAGCTTTAACTTCCTCCAATGCA
129 ACTCCA-TTGCAACTTCAGAGAAATAAGATTTATAGCTTTAACTTCCTCCAATGCA
** * *
10184310 ACTTCAGGGAGATGAA-ATTTGTGACTTTAATCTTTTCCACTGCCACTTCAGAAGCATAGGATTT
1 ACTTCAGGGAGAT-AAGATTTGTGACTTTAATCTGCTCCACTGCAACTTCAGAAGCATAAGATTT
* * ** * *
10184374 GTGACTTGTAACTTTAATCTATTCCACTGTAACTTTAGGGAAATAAGATTCGCATCTTCAACCTG
65 ATAACTTGTAACTTTAATCTATTCCACTACAACTTTAGGGAAATAAGATTAGCATCTTCAACCTA
* * * * *
10184439 CTCCATTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTACACT--ACTGTA
130 CTCCATTGCAACTTCAGAGAAATAAGATTTATAGCTTTAA-CTTC-CTCCAATGCA
* * * ** *
10184493 ACTTCAGAGAGATAAGATTTACT-ATCTTCAATCTTTTCCATTGCAACTTC--AAGCAAATAAGA
1 ACTTCAGGGAGATAAGATTT-GTGA-CTTTAATCTGCTCCACTGCAACTTCAGAAGC--ATAAGA
* ** * * * * * *
10184555 --TAT-A----TAGCTTTAATCTGCTCTACTCCAACTTCAGAGAGATAAGATTTGCTATCTTCAA
62 TTTATAACTTGTAACTTTAATCTATTCCACTACAACTTTAGGGAAATAAGATTAGC-ATCTTCAA
* ** * * * * * * * *
10184613 TCTTTTCCACTGCAACTTCAGGGAGATAAGATTTTCTATCTTCAATCTT-TTCCACTGCA
126 CCTACTCCATTGCAACTTCAGAGAAATAAGA-TTTATAGCTTTAA-CTTCCTCCAATGCA
** * * * **
10184672 ACTTCAGATAGATAAGATTTATAATTTTAATCTGCTATACTGCAACTTCAGAGAG-ATAAGATTT
1 ACTTCAGGGAGATAAGATTTGTGACTTTAATCTGCTCCACTGCAACTTCAGA-AGCATAAGATTT
* * * * * * * *
10184736 GAT-A----T--CTTCAATCTGTTCCACTGCAGCTTCAGGGAGATAAGATTTA-TATCTTCAATC
65 -ATAACTTGTAACTTTAATCTATTCCACTACAACTTTAGGGAAATAAGA-TTAGCATCTTCAACC
* * * * * *
10184793 TACCCCACTGCCACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGT--TCCACTGCA
128 TACTCCATTGCAACTTCAGAGAAATAAGA-TT-T-A----TAGCTTTAA-CT-TCCTCCAATGCA
* *
10184856 ACTTCAGGGAAATAAGATTCGCT-ATCTTTAATCTGCTCCACTGCAACTTCAG
1 ACTTCAGGGAGATAAGATTTG-TGA-CTTTAATCTGCTCCACTGCAACTTCAG
10184908 GGAGATAAGA
Statistics
Matches: 484, Mismatches: 83, Indels: 61
0.77 0.13 0.10
Matches are distributed among these distances:
177 36 0.07
178 98 0.20
179 70 0.14
180 4 0.01
181 7 0.01
182 10 0.02
183 67 0.14
184 162 0.33
185 30 0.06
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (183 bp):
ACTTCAGGGAGATAAGATTTGTGACTTTAATCTGCTCCACTGCAACTTCAGAAGCATAAGATTTA
TAACTTGTAACTTTAATCTATTCCACTACAACTTTAGGGAAATAAGATTAGCATCTTCAACCTAC
TCCATTGCAACTTCAGAGAAATAAGATTTATAGCTTTAACTTCCTCCAATGCA
Found at i:10184665 original size:134 final size:133
Alignment explanation
Indices: 10184031--10184917 Score: 531
Period size: 140 Copynumber: 6.5 Consensus size: 133
10184021 AAGCTACTTC
* *** * *
10184031 ACTGCAACTTCAGGGAGATAAGGCCTG-TAACTTCAATCTGCTCCACTGCAACTTCAGAGAGATA
1 ACTGCAACTTCAGAGAGATAAGATTTGATATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* * * ** * * * * * * *
10184095 AGCTTCAT-TACCTTCAATCTGCTCCACTACCACTTTAGGGAGATAAGATTTGTTA-CTTTAATC
66 AGATT-TTCTATCTTCAATCTTTTCCACTGCAACTTCA-AGAAATAAGATAT-ATAGCTTTAATC
*
10184158 TGCTCC
128 TGCTCT
* * * ** * *
10184164 ACTGCAACTTTAGGGAGATAAGATTT-ATAACTTGTAGCTTTAATCTATTCCACTACAACTTTAG
1 ACTGCAACTTCAGAGAGATAAGATTTGAT-A----T--CTTCAATCTGCTCCACTGCAACTTCAG
* * ** ** * * * *
10184228 GGAAATGAGATTAGCTATCTTCAATCTACTCTACTTCAACTTCAGAGAAATAAGATTTGTAGCTT
59 GGAGATAAGATTTTCTATCTTCAATCTTTTCCACTGCAACTTCA-AGAAATAAGATATATAGCTT
* *
10184293 TAA-CTTCCTCC
123 TAATC-TGCTCT
* * * ** * *
10184304 AATGCAACTTCAGGGAGATGAA-ATTTG-TGA-CTTTAATCTTTTCCACTGCCACTTCA-GAAGC
1 ACTGCAACTTCAGAGAGAT-AAGATTTGAT-ATCTTCAATCTGCTCCACTGCAACTTCAGGGAG-
* * * * * * * ** *
10184365 ATAGGATTTGTGACTTGTAACTTTAATCTATTCCACTGTAACTTTAGGGAAATAAGAT-TCGCAT
63 ATAAGATTT-T--C---TATCTTCAATCTTTTCCACTGCAACTTCA-AGAAATAAGATAT-ATAG
* * *
10184429 CTTCAACCTGCTCC
120 CTTTAATCTGCTCT
* * * * * * * * *
10184443 ATTGCAACTTCAGGGAGATAAGATTT-ATAGCTTTAATCTACACTACTGTAACTTCAGAGAGATA
1 ACTGCAACTTCAGAGAGATAAGATTTGATATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* *
10184507 AGATTTACTATCTTCAATCTTTTCCATTGCAACTTCAAGCAAATAAGATATATAGCTTTAATCTG
66 AGATTTTCTATCTTCAATCTTTTCCACTGCAACTTCAAG-AAATAAGATATATAGCTTTAATCTG
10184572 CTCT
130 CTCT
* * **
10184576 ACTCCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTTTTCCACTGCAACTTCAGGGAGATA
1 ACTGCAACTTCAGAGAGATAAGATTTGATATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* **
10184641 AGATTTTCTATCTTCAATCTTTTCCACTGCAACTTC-AGATAGATAAGATTTATAATTTTAATCT
66 AGATTTTCTATCTTCAATCTTTTCCACTGCAACTTCAAGA-A-ATAAGATATATAGCTTTAATCT
*
10184705 GCTAT
129 GCTCT
* *
10184710 ACTGCAACTTCAGAGAGATAAGATTTGATATCTTCAATCTGTTCCACTGCAGCTTCAGGGAGATA
1 ACTGCAACTTCAGAGAGATAAGATTTGATATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* *** * * * *
10184775 AGA-TTTATATCTTCAATCTACCCCACTGCCACTTCAGGGAGATAAGATTTGTAACTTGTAGCTT
66 AGATTTTCTATCTTCAATCTTTTCCACTGCAACTTCA-AGAAATAAGA----T-A--TATAGCTT
* *
10184839 TAATCTGTTCC
123 TAATCTGCTCT
* * * * *
10184850 ACTGCAACTTCAGGGAAATAAGATTCGCTATCTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
1 ACTGCAACTTCAGAGAGATAAGATTTGATATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
10184915 AGA
66 AGA
10184918 CTTGTATCTT
Statistics
Matches: 597, Mismatches: 117, Indels: 73
0.76 0.15 0.09
Matches are distributed among these distances:
132 4 0.01
133 154 0.26
134 152 0.25
135 2 0.00
136 2 0.00
137 1 0.00
138 4 0.01
139 100 0.17
140 176 0.29
141 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.33
Consensus pattern (133 bp):
ACTGCAACTTCAGAGAGATAAGATTTGATATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
AGATTTTCTATCTTCAATCTTTTCCACTGCAACTTCAAGAAATAAGATATATAGCTTTAATCTGC
TCT
Found at i:10184852 original size:51 final size:47
Alignment explanation
Indices: 10183871--10184957 Score: 568
Period size: 44 Copynumber: 23.7 Consensus size: 47
10183861 AGAAATTGTC
* * *
10183871 GCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTAGTAGCTTATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA-C---TA
* * * * * * *
10183922 GCTTTAGTGTGTTCCACTACAACTTCAGGGAAAT-AGAAGTTGCTATAGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAG-A-TT--TGTACTA
* * *
10183972 GATTTAATCTGATCCACTGCAACTTCAGAGG-TATAAGATTTGT-C--
1 GCTTTAATCTGCTCCACTGCAACTTCAG-GGAGATAAGATTTGTACTA
* * * * ***
10184016 GCTTCAAGCTACTTCACTGCAACTTCAGGGAGATAAGGCCTGTA--A
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTACTA
* * * * *
10184061 -CTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAG-CTT-CATTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTACTA
* * * * *
10184105 CCTTCAATCTGCTCCACTACCACTTTAGGGAGATAAGATTTGT--TA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTACTA
* *
10184150 -CTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTATAACTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-AC---TA
** * * * * *
10184200 GCTTTAATCTATTCCACTACAACTTTAGGGAAATGAGATTAG--CTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTACTA
* * * * * * *
10184245 TCTTCAATCTACTCTACTTCAACTTCAGAGAAATAAGATTTG---TA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTACTA
* * *
10184289 GCTTTAA-CTTCCTCCAATGCAACTTCAGGGAGATGAA-ATTTGT--GA
1 GCTTTAATC-TGCTCCACTGCAACTTCAGGGAGAT-AAGATTTGTACTA
** * * *
10184334 -CTTTAATCTTTTCCACTGCCACTTCA-GAAGCATAGGATTTGTGACTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAG-ATAAGATTTGT-AC---TA
* ** * * * *
10184384 ACTTTAATCTATTCCACTGTAACTTTAGGGAAATAAGATTCG--C-A
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTACTA
* * * *
10184428 TCTTCAACCTGCTCCATTGCAACTTCAGGGAGATAAGA-TT-TA-TA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTACTA
* * * * *
10184472 GCTTTAATCTACACTACTGTAACTTCAGAGAGATAAGA-TT-TACTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTACTA
* * ** * * * * *
10184517 TCTTCAATCTTTTCCATTGCAACTTCAAGCAAATAAGA--TATA-TA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTACTA
* * *
10184561 GCTTTAATCTGCTCTACTCCAACTTCAGAGAGATAAGATTTG--CTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTACTA
* * **
10184606 TCTTCAATCTTTTCCACTGCAACTTCAGGGAGATAAGATTT-T-CTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTACTA
* * ** **
10184651 TCTTCAATCTTTTCCACTGCAACTTCAGATAGATAAGA-TT-TA-TA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTACTA
** ** *
10184695 ATTTTAATCTGCTATACTGCAACTTCAGAGAGATAAGATTTG-A-TA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTACTA
* * * *
10184740 TCTTCAATCTGTTCCACTGCAGCTTCAGGGAGATAAGA-TT-TA-TA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTACTA
* * * * *
10184784 TCTTCAATCTACCCCACTGCCACTTCAGGGAGATAAGATTTGTAACTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-AC---TA
* * *
10184835 GCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCG--CTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTACTA
* *
10184880 TCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA-T-
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTACTA
* * *
10184925 -CTTTAATATACTCTACTGCAACTTCAGGGAGAT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGAT
10184958 GAAATTCGTG
Statistics
Matches: 806, Mismatches: 173, Indels: 121
0.73 0.16 0.11
Matches are distributed among these distances:
42 1 0.00
43 10 0.01
44 357 0.44
45 254 0.32
46 5 0.01
47 3 0.00
48 3 0.00
49 2 0.00
50 33 0.04
51 132 0.16
52 4 0.00
54 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (47 bp):
GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTACTA
Found at i:10188568 original size:33 final size:33
Alignment explanation
Indices: 10188522--10188622 Score: 184
Period size: 33 Copynumber: 3.1 Consensus size: 33
10188512 TGGTACCAAG
10188522 GATGGTCACCCTTTTCTTCTTCCTCAATATTGT
1 GATGGTCACCCTTTTCTTCTTCCTCAATATTGT
* *
10188555 GATGGTCATCCTTTTCTTCTTCCTTAATATTGT
1 GATGGTCACCCTTTTCTTCTTCCTCAATATTGT
10188588 GATGGTCACCCTTTTCTTCTTCCTCAATATTGT
1 GATGGTCACCCTTTTCTTCTTCCTCAATATTGT
10188621 GA
1 GA
10188623 CAATGGAATG
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 64 1.00
ACGTcount: A:0.16, C:0.25, G:0.13, T:0.47
Consensus pattern (33 bp):
GATGGTCACCCTTTTCTTCTTCCTCAATATTGT
Found at i:10193000 original size:19 final size:20
Alignment explanation
Indices: 10192978--10193020 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
10192968 GGTCTTTTTG
* *
10192978 TGAAATTTAATGCATATG-A
1 TGAAATGTAATGCACATGAA
10192997 TGAAATGTAATGCACATGAA
1 TGAAATGTAATGCACATGAA
10193017 TGAA
1 TGAA
10193021 TGCAAAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.44, C:0.07, G:0.19, T:0.30
Consensus pattern (20 bp):
TGAAATGTAATGCACATGAA
Found at i:10197534 original size:66 final size:66
Alignment explanation
Indices: 10197428--10197559 Score: 264
Period size: 66 Copynumber: 2.0 Consensus size: 66
10197418 CCTCCTAAAT
10197428 GATAAATTCATCATTTAATCCTTTAAATATTTTATGAAATTATATATTAATATAATAATAAAATT
1 GATAAATTCATCATTTAATCCTTTAAATATTTTATGAAATTATATATTAATATAATAATAAAATT
10197493 A
66 A
10197494 GATAAATTCATCATTTAATCCTTTAAATATTTTATGAAATTATATATTAATATAATAATAAAATT
1 GATAAATTCATCATTTAATCCTTTAAATATTTTATGAAATTATATATTAATATAATAATAAAATT
10197559 A
66 A
10197560 CACTATCATA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (66 bp):
GATAAATTCATCATTTAATCCTTTAAATATTTTATGAAATTATATATTAATATAATAATAAAATT
A
Found at i:10202249 original size:22 final size:21
Alignment explanation
Indices: 10202221--10202271 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
10202211 TTTGAATAAA
*
10202221 TTTTTTAAAATTTTTTTGAATT
1 TTTTTTAAAA-TTTGTTGAATT
*
10202243 TTTTTTAAAATTTGTTGATTT
1 TTTTTTAAAATTTGTTGAATT
10202264 TTTTTTAA
1 TTTTTTAA
10202272 TTTTATAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 17 0.63
22 10 0.37
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTTTAAAATTTGTTGAATT
Found at i:10205067 original size:6 final size:6
Alignment explanation
Indices: 10205025--10205065 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
10205015 AATAGTGATA
*
10205025 ATAATG ATAATG ATAATG ATAATG ATAATG ATAATA ATAAT
1 ATAATG ATAATG ATAATG ATAATG ATAATG ATAATG ATAAT
10205066 AACAACAACA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.54, C:0.00, G:0.12, T:0.34
Consensus pattern (6 bp):
ATAATG
Found at i:10208302 original size:46 final size:46
Alignment explanation
Indices: 10208244--10208608 Score: 278
Period size: 46 Copynumber: 8.0 Consensus size: 46
10208234 TGTAATTAAG
* * *
10208244 GTGTATAAATGTTGTTAATAG-AGATGTTAAAGTGCTGCAAATTGAA
1 GTGTTTAAATGTTGTAAATTGAAG-TGTTAAAGTGCTGCAAATTGAA
* *
10208290 GTGTTTAAATGTTGTAAATTGAAGTGTTAAAGTGTTACAAATTGAA
1 GTGTTTAAATGTTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAA
* * * *
10208336 GTATTTAAATGCTGTGAATTGAAGTGTTAAAGTGATGCAAATTGAA
1 GTGTTTAAATGTTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAA
* *
10208382 GTGTTTAAATGTTGTAAATTGAAGTGTTTTAAGTACTGCAAATTGAA
1 GTGTTTAAATGTTGTAAATTGAAGTG-TTAAAGTGCTGCAAATTGAA
* * ** * * *
10208429 TTGTATAGTTGCTTG-AAATTG-AGATGTT-TA-T-CATTG-TAATTGAG
1 GTGTTTAAATG-TTGTAAATTGAAG-TGTTAAAGTGC--TGCAAATTGAA
* * * * * * *
10208473 GTGTATAAATGTTGTTAATTG-GGATGTTAAAGTGTTGTAAGTTGAG
1 GTGTTTAAATGTTGTAAATTGAAG-TGTTAAAGTGCTGCAAATTGAA
* * * * ** *
10208519 GTGTTTAAATGCTGTAAACTGAAGTGTTTAATTGCTATAAATTGAG
1 GTGTTTAAATGTTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAA
* * * * *
10208565 GTGCTCAAATGATGTAAATTGAAGTGTTTAAGTGCTACAAATTG
1 GTGTTTAAATGTTGTAAATTGAAGTGTTAAAGTGCTGCAAATTG
10208609 TGGTGTACAA
Statistics
Matches: 259, Mismatches: 48, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
43 4 0.02
44 26 0.10
45 6 0.02
46 185 0.71
47 35 0.14
48 3 0.01
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.39
Consensus pattern (46 bp):
GTGTTTAAATGTTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAA
Found at i:10208545 original size:23 final size:23
Alignment explanation
Indices: 10208270--10208600 Score: 212
Period size: 23 Copynumber: 14.4 Consensus size: 23
10208260 AATAGAGATG
*
10208270 TTAAAGTGCTGCAAATTGAAGTGT
1 TTAAA-TGCTGTAAATTGAAGTGT
*
10208294 TTAAATGTTGTAAATTGAAGTG-
1 TTAAATGCTGTAAATTGAAGTGT
* ** *
10208316 TTAAAGTGTTACAAATTGAAGTAT
1 TTAAA-TGCTGTAAATTGAAGTGT
*
10208340 TTAAATGCTGTGAATTGAAGTG-
1 TTAAATGCTGTAAATTGAAGTGT
* *
10208362 TTAAAGTGATGCAAATTGAAGTGT
1 TTAAA-TGCTGTAAATTGAAGTGT
*
10208386 TTAAATGTTGTAAATTGAAGTGTT
1 TTAAATGCTGTAAATTGAAGTG-T
* * * *
10208410 TTAAGTACTGCAAATTGAATTGT
1 TTAAATGCTGTAAATTGAAGTGT
* **
10208433 ATAGTTGCT-TGAAATTG-AGATGT
1 TTAAATGCTGT-AAATTGAAG-TGT
* *
10208456 TTATCAT--TGT-AATTGAGGTGT
1 TTA-AATGCTGTAAATTGAAGTGT
* * * *
10208477 ATAAATGTTGTTAATTG-GGATG-
1 TTAAATGCTGTAAATTGAAG-TGT
* * *
10208499 TTAAAGTGTTGTAAGTTGAGGTGT
1 TTAAA-TGCTGTAAATTGAAGTGT
*
10208523 TTAAATGCTGTAAACTGAAGTGT
1 TTAAATGCTGTAAATTGAAGTGT
* * * *
10208546 TTAATTGCTATAAATTGAGGTGC
1 TTAAATGCTGTAAATTGAAGTGT
* *
10208569 TCAAATGATGTAAATTGAAGTGT
1 TTAAATGCTGTAAATTGAAGTGT
*
10208592 TTAAGTGCT
1 TTAAATGCT
10208601 ACAAATTGTG
Statistics
Matches: 237, Mismatches: 53, Indels: 35
0.73 0.16 0.11
Matches are distributed among these distances:
20 2 0.01
21 10 0.04
22 22 0.09
23 162 0.68
24 41 0.17
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.39
Consensus pattern (23 bp):
TTAAATGCTGTAAATTGAAGTGT
Found at i:10208620 original size:46 final size:46
Alignment explanation
Indices: 10208514--10208622 Score: 139
Period size: 46 Copynumber: 2.4 Consensus size: 46
10208504 GTGTTGTAAG
* * * * *
10208514 TTGAGGTGTTTAAATGCTGTAAACTGAAGTGTTTAATTGCTATAAA
1 TTGAGGTGCTCAAATGATGTAAACTGAAGTGTTTAAGTGCTACAAA
*
10208560 TTGAGGTGCTCAAATGATGTAAATTGAAGTGTTTAAGTGCTACAAA
1 TTGAGGTGCTCAAATGATGTAAACTGAAGTGTTTAAGTGCTACAAA
*
10208606 TTGTGGTG-TACAAATGA
1 TTGAGGTGCT-CAAATGA
10208623 GTCTAAAATT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
45 1 0.02
46 54 0.98
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (46 bp):
TTGAGGTGCTCAAATGATGTAAACTGAAGTGTTTAAGTGCTACAAA
Found at i:10211804 original size:44 final size:42
Alignment explanation
Indices: 10211482--10212297 Score: 383
Period size: 44 Copynumber: 18.7 Consensus size: 42
10211472 GGCTTTAATT
* *
10211482 TGCTCCA-TCGCAACTTCAGGGAGATAAGATTTGCCAACTTCAGTC
1 TGCTCCACT-GCAACTTCAGGGAGATAAGACTTG-C-TCTT-AGTC
* *
10211527 TGC-CTCACTGCAATTTCA-GGAGGATAAGACTTACTTTGCTTAGTC
1 TGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGC--T-CTTAGTC
* * * *
10211572 TGCTCCACTGTAACTTCAGGGAGATAAGATTTGATGC-GA-TC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGCT-CTTAGTC
* * * * * *
10211613 TGCT-CTCTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCTCTTAGTC
** ** * * * * * *
10211656 CACTCCACTATAATTTTAGGGAGATAGGA-TTGTTGGCTTTAATT
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGCT--C-TTAGTC
* * * *
10211700 TGCTCCACTGCAACTTCAGAGAGATCAGCCTTACCATCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTT-GC-TCTT-AGTC
* *
10211745 TGCCCCACTGCAACTTCA-AGAGGATAAGACTTGCTTACTTAGTC
1 TGCTCCACTGCAACTTCAGGGA-GATAAGACTTGC-T-CTTAGTC
* * * *
10211789 TGCTCCACTGTAACTTCAGGGAGATAAGACTAGATGC-GA-TC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGCT-CTTAGTC
* * * * * *
10211830 TGCT-CTCTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCTCTTAGTC
* * * * * * *
10211873 CGTTCCAATGCAAGTTCAGGGAGATAGGATTATCGGCT-TTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACT-T--GCTCTTAGTC
* *
10211917 TGCTCCACTGTAACTTCAAGGAGATAAGACTTGCCATCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTG-C-TCTT-AGTC
*
10211962 TGCCCCACTGCAACTTCA-GGAGGATAAGACTTGCTTACTTAGTC
1 TGCTCCACTGCAACTTCAGGGA-GATAAGACTTGC-T-CTTAGTC
* * * *
10212006 TGCTCTACTGTAACTTCAGGGAGATAAGACTAGCTGC-GA-TC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGCT-CTTAGTC
* * * * ** * * *
10212047 TGCT-CTCTGCAACTTTAGAGAGATAATATCCGAGGTTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGA--CTTGCTCTTAGTC
* * * * *
10212090 TGCTCCAATGCAACTTCAAGGAGATAGGATTATCGGCT-TTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACT-T--GCTCTTAGTC
* * * *
10212134 TGTTCCACTACAACTTCAGGGAGATAAGATTATCGGCT-TTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACT-T--GCTCTTAGTC
*
10212178 TGCTCCACTGTAACTTCAGGGAGATAAGACTTGCCATCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTG-C-TCTT-AGTC
* *
10212223 TGCCCCACTGCAACTTCA-GGAGGATAAGACTTGCTTATTTAGTC
1 TGCTCCACTGCAACTTCAGGGA-GATAAGACTTGC-T-CTTAGTC
*
10212267 TGCTCCACTGTAACTTCAGGGAGATAAGACT
1 TGCTCCACTGCAACTTCAGGGAGATAAGACT
10212298 AGATGCGATA
Statistics
Matches: 590, Mismatches: 130, Indels: 103
0.72 0.16 0.13
Matches are distributed among these distances:
40 60 0.10
41 25 0.04
42 18 0.03
43 26 0.04
44 293 0.50
45 159 0.27
46 8 0.01
47 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (42 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTCTTAGTC
Found at i:10211848 original size:217 final size:217
Alignment explanation
Indices: 10211470--10212253 Score: 1022
Period size: 217 Copynumber: 3.6 Consensus size: 217
10211460 CACTCCACTG
* * * * * *
10211470 TCGGCTTTAATTTGCTCCA-TCGCAACTTCAGGGAGATAAGATTTGCCAACTTCAGTCTGCCTCA
1 TCGGCTTTAATCTGCTCCACT-GCAACTTCAGAGAGATAAGACTTACCATCTTCAGTCTGCCCCA
* * * *
10211534 CTGCAATTTCAGGAGGATAAGACTTACTTTGCTTAGTCTGCTCCACTGTAACTTCAGGGAGATAA
65 CTGCAACTTCAAGAGGATAAGACTTGC-TTACTTAGTCTGCTCCACTGTAACTTCAGGGAGATAA
* * * *
10211599 GATTTGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCACTCCAC
129 GACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCAA
** * * *
10211664 TATAATTTTAGGGAGATAGGATTG
194 TGCAACTTCAGGGAGATAGGATTA
* * * *
10211688 TTGGCTTTAATTTGCTCCACTGCAACTTCAGAGAGATCAGCCTTACCATCTTCAGTCTGCCCCAC
1 TCGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGACTTACCATCTTCAGTCTGCCCCAC
10211753 TGCAACTTCAAGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGTAACTTCAGGGAGATAAGA
66 TGCAACTTCAAGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGTAACTTCAGGGAGATAAGA
*
10211818 CTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGTTCCAATG
131 CTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCAATG
*
10211883 CAAGTTCAGGGAGATAGGATTA
196 CAACTTCAGGGAGATAGGATTA
* *
10211905 TCGGCTTTAATCTGCTCCACTGTAACTTCA-AGGAGATAAGACTTGCCATCTTCAGTCTGCCCCA
1 TCGGCTTTAATCTGCTCCACTGCAACTTCAGA-GAGATAAGACTTACCATCTTCAGTCTGCCCCA
* *
10211969 CTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCTACTGTAACTTCAGGGAGATAAG
65 CTGCAACTTCAAGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGTAACTTCAGGGAGATAAG
* * * * *
10212034 ACTAGCTGCGATCTGCTCTCTGCAACTTTAGAGAGATAATATCCGAGGTTTTAATCTGCTCCAAT
130 ACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCAAT
*
10212099 GCAACTTCAAGGAGATAGGATTA
195 GCAACTTCAGGGAGATAGGATTA
* * * * ** * * *
10212122 TCGGCTTTAATCTGTTCCACTACAACTTCAGGGAGATAAGA-TTATCGGCTTTAATCTGCTCCAC
1 TCGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGACTTACCATCTTCAGTCTGCCCCAC
* * * * *
10212186 TGTAACTTC-AGGGAGATAAGACTTGC-CATCTTCAGTCTGCCCCACTGCAACTTCA-GGAGGAT
66 TGCAACTTCAAGAG-GATAAGACTTGCTTA-CTT-AGTCTGCTCCACTGTAACTTCAGGGA-GAT
10212248 AAGACT
127 AAGACT
10212254 TGCTTATTTA
Statistics
Matches: 503, Mismatches: 56, Indels: 15
0.88 0.10 0.03
Matches are distributed among these distances:
215 3 0.01
216 43 0.09
217 378 0.75
218 78 0.16
219 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (217 bp):
TCGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGACTTACCATCTTCAGTCTGCCCCAC
TGCAACTTCAAGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGTAACTTCAGGGAGATAAGA
CTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCAATG
CAACTTCAGGGAGATAGGATTA
Found at i:10212008 original size:89 final size:88
Alignment explanation
Indices: 10211475--10212297 Score: 418
Period size: 89 Copynumber: 9.4 Consensus size: 88
10211465 CACTGTCGGC
* * * * *
10211475 TTTAATTTGCTCCA-TCGCAACTTCAGGGAGATAAGATTTGCCAACTTCAGTCTGCCTCACTGCA
1 TTTAATCTGCTCCACT-GTAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTGCCCCACTGCA
* *
10211539 ATTTCAGGAG-GATAAGACTTACTT
65 ACTTCAGGAGAGATAAGACTTGC-T
* * * * *
10211563 TGCTTAGTCTGCTCCACTGTAACTTCAGGGAGATAAGATTTG--A--TGC-GATCTG-CTCTCTG
1 T--TTAATCTGCTCCACTGTAACTTCAGGGAGATAAGACTTGCCAGCTTCAG-TCTGCCCCACTG
* *
10211622 CAACTTCA-GAGAGATAAGATCTGAGGT
63 CAACTTCAGGAGAGATAAGA-CT-TGCT
** * * * * *** * * * *
10211649 TTTAATCCACTCCACTATAATTTTAGGGAGATAGGA-TTGTTGGCTTTAATTTGCTCCACTGCAA
1 TTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTGCCCCACTGCAA
* * *
10211713 CTTCA-GAGAGATCAGCCTTACCAT
66 CTTCAGGAGAGATAAGACTT-GC-T
* * * * * * *
10211737 CTTCAGTCTGCCCCACTGCAACTTCA-AGAGGATAAGACTTGCTTA-CTT-AGTCTGCTCCACTG
1 -TTTAATCTGCTCCACTGTAACTTCAGGGA-GATAAGACTTGC-CAGCTTCAGTCTGCCCCACTG
* * *
10211799 TAACTTCAGG-GAGATAAGACTAG-A
63 CAACTTCAGGAGAGATAAGACTTGCT
*** * * * * * * * ** *
10211823 TGCGATCTGCT-CTCTGCAACTTCAGAGAGATAAGA-TCTG--AGGTTTTAATCCGTTCCAATGC
1 TTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGACT-TGCCA-GCTTCAGTCTGCCCCACTGC
* * *
10211884 AAGTTCAGG-GAGATAGGATTATCGGC-
64 AACTTCAGGAGAGATAAGACT-T--GCT
* *
10211910 TTTAATCTGCTCCACTGTAACTTCAAGGAGATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAA
1 TTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTGCCCCACTGCAA
10211975 CTTCAGGAG-GATAAGACTTGCT
66 CTTCAGGAGAGATAAGACTTGCT
* * * * *
10211997 TACTTAGTCTGCTCTACTGTAACTTCAGGGAGATAAGAC-T---AGCTGC-GATCTG-CTCTCTG
1 T--TTAATCTGCTCCACTGTAACTTCAGGGAGATAAGACTTGCCAGCTTCAG-TCTGCCCCACTG
* * ** *
10212056 CAACTTTA-GAGAGATAATATCCGAGGT
63 CAACTTCAGGAGAGATAAGA--CTTGCT
* * * * ** * * * ** *
10212083 TTTAATCTGCTCCAATGCAACTTCAAGGAGATAGGA-TTATCGGCTTTAATCTGTTCCACTACAA
1 TTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTGCCCCACTGCAA
*
10212147 CTTCAGG-GAGATAAGATTATCGGC-
66 CTTCAGGAGAGATAAGACT-T--GCT
*
10212171 TTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAA
1 TTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTGCCCCACTGCAA
10212236 CTTCAGGAG-GATAAGACTTGCTT
66 CTTCAGGAGAGATAAGACTTGC-T
*
10212259 ATTTAGTCTGCTCCACTGTAACTTCAGGGAGATAAGACT
1 -TTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGACT
10212298 AGATGCGATA
Statistics
Matches: 549, Mismatches: 130, Indels: 111
0.69 0.16 0.14
Matches are distributed among these distances:
81 1 0.00
83 9 0.02
84 128 0.23
85 39 0.07
86 18 0.03
87 23 0.04
88 101 0.18
89 184 0.34
90 44 0.08
91 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (88 bp):
TTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGACTTGCCAGCTTCAGTCTGCCCCACTGCAA
CTTCAGGAGAGATAAGACTTGCT
Found at i:10212023 original size:261 final size:258
Alignment explanation
Indices: 10211741--10212299 Score: 734
Period size: 261 Copynumber: 2.1 Consensus size: 258
10211731 TACCATCTTC
* * * * * *
10211741 AGTCTGCCCCACTGCAACTTCA-AGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGTAACTT
1 AGTCTGCTCCACTGTAACTTCAGGGA-GATAAGACTAGC-TAC-GA-TCTGCT-CACTGCAACTT
* * *
10211805 CAGGGAGATAAGA-CTA-GATGCGATCTGCTCTC-TGCAACTTC-AGAGAGATAAGATCTGA-GG
61 CAGAGAGATAAGACCGAGGATGCAATCTGCTC-CATGCAACTTCAAG-GAGATAAGAT-T-ACGG
* * * *
10211865 TTTTAATCCGTTCCAATGCAAGTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGTAA
122 CTTTAATCCGTTCCAATACAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGTAA
10211930 CTTCAAGGAGATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTG
187 CTTCAAGGAGATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTG
10211995 CTTACTT
252 CTTACTT
* * * *
10212002 AGTCTGCTCTACTGTAACTTCAGGGAGATAAGACTAGCTGCGATCTGCTCTCTGCAACTTTAGAG
1 AGTCTGCTCCACTGTAACTTCAGGGAGATAAGACTAGCTACGATCTGCTCACTGCAACTTCAGAG
* * ** *
10212067 AGATAATATCCGAGGTTTTAATCTGCTCCAATGCAACTTCAAGGAGATAGGATTATCGGCTTTAA
66 AGATAAGA-CCGAGGATGCAATCTGCTCC-ATGCAACTTCAAGGAGATAAGATTA-CGGCTTTAA
* * *
10212132 TCTGTTCCACTACAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGTAACTTCAG
128 TCCGTTCCAATACAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGTAACTTCAA
*
10212197 GGAGATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTATT
193 GGAGATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACT
10212262 T
258 T
10212263 AGTCTGCTCCACTGTAACTTCAGGGAGATAAGACTAG
1 AGTCTGCTCCACTGTAACTTCAGGGAGATAAGACTAG
10212300 ATGCGATATG
Statistics
Matches: 262, Mismatches: 27, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
257 19 0.07
258 6 0.02
259 5 0.02
260 13 0.05
261 215 0.82
262 4 0.02
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (258 bp):
AGTCTGCTCCACTGTAACTTCAGGGAGATAAGACTAGCTACGATCTGCTCACTGCAACTTCAGAG
AGATAAGACCGAGGATGCAATCTGCTCCATGCAACTTCAAGGAGATAAGATTACGGCTTTAATCC
GTTCCAATACAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGTAACTTCAAGGA
GATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTT
Found at i:10215217 original size:46 final size:44
Alignment explanation
Indices: 10215165--10215398 Score: 230
Period size: 46 Copynumber: 5.6 Consensus size: 44
10215155 TTTGAGTACT
*
10215165 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTTTAGCTACATTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG--TTAGCTACACTTA
**
10215211 TCTGATCAAGAAACAAAGTGATAAGT-G--G-T---TACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTAGCTACACTTA
**
10215248 TCTGATCAAGAAACAAAGTGATAA---GT-G---GCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTAGCTACACTTA
*
10215285 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG-TT-AGCTACACTTA
** *
10215331 TCTGATCAAGTGGTAAAGTGATAAGTGGTAGCCTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG-TTAGCTACACTTA
10215376 TCTGATCAAG-GAC-AAGTGATAAG
1 TCTGATCAAGTGACAAAGTGATAAG
10215399 AGGTCATATG
Statistics
Matches: 166, Mismatches: 10, Indels: 27
0.82 0.05 0.13
Matches are distributed among these distances:
35 1 0.01
36 1 0.01
37 60 0.36
40 3 0.02
41 1 0.01
43 11 0.07
44 1 0.01
45 22 0.13
46 66 0.40
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (44 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTAGCTACACTTA
Found at i:10215249 original size:37 final size:37
Alignment explanation
Indices: 10215203--10215313 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
10215193 TAGTTTTAGC
*
10215203 TACATTTATCTGATCAAGAAACAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
*
10215240 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGC
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
** *
10215277 TACACTTATCTGATCAAGTGATAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
10215314 AGCTTCAGCT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.29
Consensus pattern (37 bp):
TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
Found at i:10236236 original size:17 final size:15
Alignment explanation
Indices: 10236199--10236230 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
10236189 ATTTTCATTT
10236199 TATT-ATTTAAAATA
1 TATTAATTTAAAATA
10236213 TATTAATTTAAAATA
1 TATTAATTTAAAATA
10236228 TAT
1 TAT
10236231 ATTAATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTAATTTAAAATA
Found at i:10246711 original size:2 final size:2
Alignment explanation
Indices: 10246704--10246732 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10246694 ACAGAAATAA
10246704 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10246733 AAGTAAAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10252687 original size:12 final size:13
Alignment explanation
Indices: 10252670--10252699 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
10252660 AATAAAATTG
10252670 AATTATTAA-ATA
1 AATTATTAATATA
10252682 AATTATTAATATA
1 AATTATTAATATA
10252695 AATTA
1 AATTA
10252700 GATATAGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
AATTATTAATATA
Found at i:10256719 original size:45 final size:45
Alignment explanation
Indices: 10256663--10256821 Score: 180
Period size: 45 Copynumber: 3.6 Consensus size: 45
10256653 ATAAGACTTG
*
10256663 TATCTTTGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGT
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGT
* ** ** ** *
10256708 TATCTTCGATCTACTTCGCCACTGATATGGGAAGACAAGATCTGC
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGT
*
10256753 TATCTTCGATCTACTTCA-TGCCAATACATGAAGACAAGATCTGCT
1 TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTG-T
*
10256798 T-TCTTCGATC-GCTTCCACTGCCAA
1 TATCTTCGATCTACTT-CACTGCCAA
10256822 CCAGGGAGAT
Statistics
Matches: 92, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
43 3 0.03
44 29 0.32
45 60 0.65
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.31
Consensus pattern (45 bp):
TATCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGT
Found at i:10256991 original size:132 final size:132
Alignment explanation
Indices: 10256831--10257082 Score: 353
Period size: 132 Copynumber: 1.9 Consensus size: 132
10256821 ACCAGGGAGA
** ** *
10256831 TAGAATTACTGGCTTCAATATACTCCACTGTAACTTCAGAGAGGTAAAATTTACCATCTTTGATC
1 TAGAATTACTGGCTTCAATATACTCCACTGTAACCACAGAGAGGTAAAATCCACCATCCTTGATC
* * *
10256896 TGCTCCACTACTGCTT-GAGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCTAGGG
66 TGCTCCACTACTACTTAG-GGAGACAAGATCTGAAATATTCAATCTATTCAACTGCTGCCTAGGG
10256960 AAG
130 AAG
* * * *
10256963 TAGAATTACTGGCTTCACTGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCCTTGATC
1 TAGAATTACTGGCTTCAATATACTCCACTGTAACCACAGAGAGGTAAAATCCACCATCCTTGATC
* * *
10257028 TGCTCCACTACTACTTAGGGAGATAAGATCTGTAATATTCAATCTGTTCAACTGC
66 TGCTCCACTACTACTTAGGGAGACAAGATCTGAAATATTCAATCTATTCAACTGC
10257083 AATGTCGGGG
Statistics
Matches: 104, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
132 103 0.99
133 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (132 bp):
TAGAATTACTGGCTTCAATATACTCCACTGTAACCACAGAGAGGTAAAATCCACCATCCTTGATC
TGCTCCACTACTACTTAGGGAGACAAGATCTGAAATATTCAATCTATTCAACTGCTGCCTAGGGA
AG
Found at i:10257124 original size:50 final size:50
Alignment explanation
Indices: 10257065--10257433 Score: 274
Period size: 50 Copynumber: 7.4 Consensus size: 50
10257055 ATCTGTAATA
* *
10257065 TTCAATCTGTTCAACTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAGC
1 TTCAATCTGTTCAACTGCAATGTCAGGGAAACAAGATCCGCCGTCGTAGC
* * ** ** * * *
10257115 TTCAATCTGTTCCACCGCACCGTCAGGGAAGTAAGATCTGCCGTTGTGGC
1 TTCAATCTGTTCAACTGCAATGTCAGGGAAACAAGATCCGCCGTCGTAGC
* * * * * *
10257165 TTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCATCGTAGC
1 TTCAATCTGTTCAACTGCAATGTCAGGGAAACAAGATCCGCCGTCGTAGC
* * * * * ** * * *
10257215 TTCAATTTGTTCTATTGCACTG-CTAAGGAAGTAAGATCCACCGTTGTGGC
1 TTCAATCTGTTCAACTGCAATGTC-AGGGAAACAAGATCCGCCGTCGTAGC
* * * * *
10257265 TTCAATCTTTTTAATTGCAATATCAGGGAAACTAGATCCGCCGTCGTAGC
1 TTCAATCTGTTCAACTGCAATGTCAGGGAAACAAGATCCGCCGTCGTAGC
* * * ** * * *
10257315 TTCAATCTGTTCCACTGCACTG-CTAAGGAAGTAAGATCCGTCGTTGTGGC
1 TTCAATCTGTTCAACTGCAATGTC-AGGGAAACAAGATCCGCCGTCGTAGC
* * * * * * *
10257365 TTTAATCTTTTTAATTGCAATATCAGGGAAACCAGATCTGCCGTCGTAGC
1 TTCAATCTGTTCAACTGCAATGTCAGGGAAACAAGATCCGCCGTCGTAGC
*
10257415 TTCAATCTGTTCCACTGCA
1 TTCAATCTGTTCAACTGCA
10257434 TTGCTAAGGA
Statistics
Matches: 229, Mismatches: 86, Indels: 8
0.71 0.27 0.02
Matches are distributed among these distances:
49 2 0.01
50 225 0.98
51 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (50 bp):
TTCAATCTGTTCAACTGCAATGTCAGGGAAACAAGATCCGCCGTCGTAGC
Found at i:10257184 original size:100 final size:100
Alignment explanation
Indices: 10257065--10257452 Score: 589
Period size: 100 Copynumber: 3.9 Consensus size: 100
10257055 ATCTGTAATA
* * * * *
10257065 TTCAATCTGTTCAACTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCAC
1 TTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCAC
* * * *
10257130 CGCACCG-TCAGGGAAGTAAGATCTGCCGTTGTGGC
66 TGCACTGCT-AAGGAAGTAAGATCCGCCGTTGTGGC
* * * *
10257165 TTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCATCGTAGCTTCAATTTGTTCTAT
1 TTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCAC
*
10257230 TGCACTGCTAAGGAAGTAAGATCCACCGTTGTGGC
66 TGCACTGCTAAGGAAGTAAGATCCGCCGTTGTGGC
*
10257265 TTCAATCTTTTTAATTGCAATATCAGGGAAACTAGATCCGCCGTCGTAGCTTCAATCTGTTCCAC
1 TTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCAC
*
10257330 TGCACTGCTAAGGAAGTAAGATCCGTCGTTGTGGC
66 TGCACTGCTAAGGAAGTAAGATCCGCCGTTGTGGC
* *
10257365 TTTAATCTTTTTAATTGCAATATCAGGGAAACCAGATCTGCCGTCGTAGCTTCAATCTGTTCCAC
1 TTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCAC
*
10257430 TGCATTGCTAAGGAAGTAAGATC
66 TGCACTGCTAAGGAAGTAAGATC
10257453 TATGGTTCCG
Statistics
Matches: 262, Mismatches: 25, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
100 261 1.00
101 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (100 bp):
TTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCAC
TGCACTGCTAAGGAAGTAAGATCCGCCGTTGTGGC
Found at i:10258714 original size:7 final size:7
Alignment explanation
Indices: 10258695--10258736 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
10258685 TTAGCCTCTC
10258695 CATTTTT
1 CATTTTT
10258702 -ACTTTTT
1 CA-TTTTT
10258709 CATTTTT
1 CATTTTT
10258716 CATTTTT
1 CATTTTT
10258723 C-TCTTTT
1 CAT-TTTT
10258730 CATTTTT
1 CATTTTT
10258737 TCACATCACT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
6 2 0.06
7 27 0.87
8 2 0.06
ACGTcount: A:0.12, C:0.17, G:0.00, T:0.71
Consensus pattern (7 bp):
CATTTTT
Found at i:10258719 original size:21 final size:21
Alignment explanation
Indices: 10258695--10258736 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
10258685 TTAGCCTCTC
10258695 CATTTTTACT-TTTTCATTTTT
1 CATTTTT-CTCTTTTCATTTTT
10258716 CATTTTTCTCTTTTCATTTTT
1 CATTTTTCTCTTTTCATTTTT
10258737 TCACATCACT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.12, C:0.17, G:0.00, T:0.71
Consensus pattern (21 bp):
CATTTTTCTCTTTTCATTTTT
Found at i:10268244 original size:86 final size:84
Alignment explanation
Indices: 10268099--10268266 Score: 257
Period size: 86 Copynumber: 2.0 Consensus size: 84
10268089 ATTTAAATCC
* * *
10268099 TTTAAAACATTATAAAGATATAAACTATTAAAATAGTAAATTTACATTTTAGCTTTTATAAATAA
1 TTTAAAAAATTATAAAGATATAAACTATTAAAATAGTAAAATTACATTTTAGCTCTTATAAA-AA
10268164 TATACAACTTAATATCTGCAT
65 TATACAACTTAAT-TCTGCAT
*
10268185 TTTAAAAAATTATAAAGATATAAGCTATTAAAAT-GATAAAATTACATTTTAGCTCTTATAAAAA
1 TTTAAAAAATTATAAAGATATAAACTATTAAAATAG-TAAAATTACATTTTAGCTCTTATAAAAA
*
10268249 TATGCAACTTAATTCTGC
65 TATACAACTTAATTCTGC
10268267 TTTGCTACTT
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
84 5 0.07
85 15 0.20
86 56 0.74
ACGTcount: A:0.46, C:0.10, G:0.06, T:0.38
Consensus pattern (84 bp):
TTTAAAAAATTATAAAGATATAAACTATTAAAATAGTAAAATTACATTTTAGCTCTTATAAAAAT
ATACAACTTAATTCTGCAT
Found at i:10268777 original size:22 final size:20
Alignment explanation
Indices: 10268752--10268803 Score: 50
Period size: 22 Copynumber: 2.4 Consensus size: 20
10268742 ATTTTAAACC
10268752 TTAAATCAATAATTCAATAAAA
1 TTAAATCAAT-ATT-AATAAAA
*
10268774 TTAAAATTCAATATTAATAATA
1 TT-AAA-TCAATATTAATAAAA
10268796 TATAAATC
1 T-TAAATC
10268804 GTTTGAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 12 0.46
23 7 0.27
24 5 0.19
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.37
Consensus pattern (20 bp):
TTAAATCAATATTAATAAAA
Found at i:10269559 original size:31 final size:31
Alignment explanation
Indices: 10269484--10269560 Score: 120
Period size: 31 Copynumber: 2.5 Consensus size: 31
10269474 GTAACATTTC
*
10269484 ATAGTTAGGTGACCAAAAAAAAAATTTACTA
1 ATAGTTAGGTGACTAAAAAAAAAATTTACTA
*
10269515 ATAGTTAGGTGACTAAAAAAGAAATTTACTA
1 ATAGTTAGGTGACTAAAAAAAAAATTTACTA
10269546 ATAGTT-GGCTGACTA
1 ATAGTTAGG-TGACTA
10269561 CTAGCATATT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
30 2 0.05
31 41 0.95
ACGTcount: A:0.45, C:0.09, G:0.17, T:0.29
Consensus pattern (31 bp):
ATAGTTAGGTGACTAAAAAAAAAATTTACTA
Found at i:10269772 original size:16 final size:15
Alignment explanation
Indices: 10269731--10269773 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
10269721 ATTTTATTCT
10269731 AATTATAATTATTGA
1 AATTATAATTATTGA
*
10269746 AA-TATATATTATTTA
1 AATTATA-ATTATTGA
10269761 CAATTATAATTAT
1 -AATTATAATTAT
10269774 ATTTGTGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 4 0.17
15 9 0.38
16 7 0.29
17 4 0.17
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (15 bp):
AATTATAATTATTGA
Found at i:10274458 original size:39 final size:37
Alignment explanation
Indices: 10274414--10274503 Score: 94
Period size: 39 Copynumber: 2.4 Consensus size: 37
10274404 GAATTTAATA
*
10274414 AAAATATATTTTTATTTTTATTTTTTAATTTTTAATTTT
1 AAAATATATTTTTACTTTTA-TTTTT-ATTTTTAATTTT
* *
10274453 AAAATAT-TTTAAAATACTTTTATTTTTATTTTTATTTTT
1 AAAATATATTT---TTACTTTTATTTTTATTTTTAATTTT
10274492 AAAAT-TATTTTT
1 AAAATATATTTTT
10274504 TGGTGTTTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
36 1 0.02
38 4 0.09
39 26 0.60
40 5 0.12
41 7 0.16
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (37 bp):
AAAATATATTTTTACTTTTATTTTTATTTTTAATTTT
Found at i:10276903 original size:31 final size:31
Alignment explanation
Indices: 10276865--10276923 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
10276855 CGTTTGTTCA
*
10276865 GGACTAAAATTTTA-AAATTCAAAAAGTACAT
1 GGACT-AAATTTAACAAATTCAAAAAGTACAT
10276896 GGACTAAATTTAACAAATTCAAAAAGTA
1 GGACTAAATTTAACAAATTCAAAAAGTA
10276924 TAGATACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 7 0.27
31 19 0.73
ACGTcount: A:0.53, C:0.10, G:0.10, T:0.27
Consensus pattern (31 bp):
GGACTAAATTTAACAAATTCAAAAAGTACAT
Found at i:10281790 original size:8 final size:9
Alignment explanation
Indices: 10281769--10281794 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
10281759 GTGGTGGAAG
10281769 AAAAAGAAC
1 AAAAAGAAC
10281778 AAAAAGAAC
1 AAAAAGAAC
10281787 AAAAAGAA
1 AAAAAGAA
10281795 AATGAAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.81, C:0.08, G:0.12, T:0.00
Consensus pattern (9 bp):
AAAAAGAAC
Found at i:10281808 original size:15 final size:15
Alignment explanation
Indices: 10281766--10281815 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
10281756 GTGGTGGTGG
*
10281766 AAGAAAAAGAACAAA
1 AAGAAAAAGAAGAAA
10281781 AAGAACAAA-AAGAAA
1 AAGAA-AAAGAAGAAA
* *
10281796 ATGAAAAAGAAGAAG
1 AAGAAAAAGAAGAAA
10281811 AAGAA
1 AAGAA
10281816 GCACATCCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 3 0.10
15 23 0.79
16 3 0.10
ACGTcount: A:0.76, C:0.04, G:0.18, T:0.02
Consensus pattern (15 bp):
AAGAAAAAGAAGAAA
Found at i:10281816 original size:9 final size:9
Alignment explanation
Indices: 10281765--10281816 Score: 50
Period size: 9 Copynumber: 5.4 Consensus size: 9
10281755 GGTGGTGGTG
10281765 GAAGAAAAA
1 GAAGAAAAA
*
10281774 GAACAAAAA
1 GAAGAAAAA
*
10281783 GAACAAAAA
1 GAAGAAAAA
10281792 GAAAATGAAAAA
1 G--AA-GAAAAA
*
10281804 GAAGAAGAA
1 GAAGAAAAA
10281813 GAAG
1 GAAG
10281817 CACATCCATA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
9 27 0.73
10 2 0.05
11 2 0.05
12 6 0.16
ACGTcount: A:0.73, C:0.04, G:0.21, T:0.02
Consensus pattern (9 bp):
GAAGAAAAA
Found at i:10286448 original size:20 final size:20
Alignment explanation
Indices: 10286410--10286448 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
10286400 TCATGTCATC
*
10286410 ATCTAAAAATAATATATATA
1 ATCTAAAAATAATAAATATA
10286430 ATCTAAAAATTAA-AAATAT
1 ATCTAAAAA-TAATAAATAT
10286449 TATAATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
ATCTAAAAATAATAAATATA
Found at i:10287199 original size:85 final size:85
Alignment explanation
Indices: 10287050--10287209 Score: 212
Period size: 85 Copynumber: 1.9 Consensus size: 85
10287040 TTCACCATAA
* * *** * * *
10287050 GTAAGATAATGTCAGAGATCATGTTAGAATCCAATTTTGGATGATTTTGTGACATACCGGCAACA
1 GTAAGACAATGTCAGAGATCATGTCAGAATCCAATTTCAAATGATTCTATGACATACCGACAACA
10287115 ACACAAGTATTTCAAAATAC
66 ACACAAGTATTTCAAAATAC
* * *
10287135 GTAAGACAATGTTAGAGATCATGTCAGAATCCAATTTCAAATGATTCTATGACGTACCTACAACA
1 GTAAGACAATGTCAGAGATCATGTCAGAATCCAATTTCAAATGATTCTATGACATACCGACAACA
*
10287200 ACATAAGTAT
66 ACACAAGTAT
10287210 GTGTAGTGTT
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
85 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (85 bp):
GTAAGACAATGTCAGAGATCATGTCAGAATCCAATTTCAAATGATTCTATGACATACCGACAACA
ACACAAGTATTTCAAAATAC
Found at i:10289417 original size:26 final size:26
Alignment explanation
Indices: 10289384--10289436 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10289374 AAAATTTATA
10289384 TATAAAA-TAAAACAATATTTTTATTT
1 TATAAAATTAAAA-AATATTTTTATTT
*
10289410 TATAAAATTAAAATATATTTTTATTT
1 TATAAAATTAAAAAATATTTTTATTT
10289436 T
1 T
10289437 TATTTTATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (26 bp):
TATAAAATTAAAAAATATTTTTATTT
Found at i:10297521 original size:31 final size:31
Alignment explanation
Indices: 10297454--10297521 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
10297444 TTAATAGCTC
* * * *
10297454 AGTGACTTAAATGAAAAGTTTTAAATAGTTT
1 AGTGATTTAAATGAAAACTTTCAAATAATTT
10297485 AGTGATTTAAATGAAAACTTTCAAATAATTT
1 AGTGATTTAAATGAAAACTTTCAAATAATTT
10297516 AGTGAT
1 AGTGAT
10297522 CATTTTGTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.43, C:0.04, G:0.15, T:0.38
Consensus pattern (31 bp):
AGTGATTTAAATGAAAACTTTCAAATAATTT
Found at i:10300911 original size:16 final size:16
Alignment explanation
Indices: 10300897--10300928 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
10300887 ATAATATTTT
10300897 ATAATAAATATATTTAA
1 ATAA-AAATATATTTAA
10300914 ATAAAAATATATTTA
1 ATAAAAATATATTTA
10300929 TGTTGTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
ATAAAAATATATTTAA
Found at i:10300916 original size:14 final size:16
Alignment explanation
Indices: 10300889--10300929 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
10300879 ATTGCACTAT
10300889 AATAT-TTTATAAT-A
1 AATATATTTATAATAA
10300903 AATATATTTA-AATAAA
1 AATATATTTATAAT-AA
10300919 AATATATTTAT
1 AATATATTTAT
10300930 GTTGTATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 8 0.35
15 4 0.17
16 11 0.48
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
AATATATTTATAATAA
Found at i:10308102 original size:28 final size:28
Alignment explanation
Indices: 10308067--10308121 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
10308057 GATACTCAAA
10308067 CTTGGCTCCCTTGAGAAATAAAGCTCAG
1 CTTGGCTCCCTTGAGAAATAAAGCTCAG
* *
10308095 CTTGGCTCCTTTGAGAAATCAAGCTCA
1 CTTGGCTCCCTTGAGAAATAAAGCTCA
10308122 ACTTAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (28 bp):
CTTGGCTCCCTTGAGAAATAAAGCTCAG
Found at i:10318516 original size:25 final size:25
Alignment explanation
Indices: 10318482--10318536 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
10318472 TAGACAGAGC
*
10318482 TTAAATTATTATTATTATGTTGATT
1 TTAAATTATTATTATTATGTGGATT
10318507 TTAAATTATTATTATTATGTGGATT
1 TTAAATTATTATTATTATGTGGATT
10318532 TTAAA
1 TTAAA
10318537 AGTTGTCAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (25 bp):
TTAAATTATTATTATTATGTGGATT
Found at i:10323184 original size:38 final size:37
Alignment explanation
Indices: 10323115--10323187 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
10323105 TTTTCATAAT
* *
10323115 TTCACTTTTTCACTTTTAATCACTATTCAATTCAAAA
1 TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
10323152 TTCACTTTTCCA-TTTTCAAGTCAATATTCAATTCAA
1 TTCACTTTTCCACTTTT-AA-TCAATATTCAATTCAA
10323188 TTCCACACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.32, C:0.22, G:0.01, T:0.45
Consensus pattern (37 bp):
TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
Found at i:10323343 original size:23 final size:23
Alignment explanation
Indices: 10323317--10323392 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
10323307 ATAAGTGCCA
10323317 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
10323340 CACTGATATGTAGCCGAAGTTAC
1 CACTGATATGTAGCCGAAGCTAC
10323363 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
10323386 CACTGAT
1 CACTGAT
10323393 CAATAACACT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:10324247 original size:22 final size:24
Alignment explanation
Indices: 10324221--10324264 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
10324211 TAGAAATATT
10324221 AAATAT-ATA-TTTTTTATTTTTA
1 AAATATAATAGTTTTTTATTTTTA
10324243 AAATATAATAGTTTTTTATTTT
1 AAATATAATAGTTTTTTATTTT
10324265 AAGTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.30
23 3 0.15
24 11 0.55
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
AAATATAATAGTTTTTTATTTTTA
Found at i:10324375 original size:9 final size:9
Alignment explanation
Indices: 10324361--10324388 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
10324351 TTTTGTTACA
10324361 ACAATTAAT
1 ACAATTAAT
10324370 ACAATTAAT
1 ACAATTAAT
10324379 ACAATTAAT
1 ACAATTAAT
10324388 A
1 A
10324389 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:10324410 original size:68 final size:68
Alignment explanation
Indices: 10324331--10324540 Score: 379
Period size: 68 Copynumber: 3.1 Consensus size: 68
10324321 TCAAGTTTGT
*
10324331 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
10324396 AAA
66 AAA
*
10324399 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATTCAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
10324464 AAA
66 AAA
10324467 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
*
10324530 AAT
66 AAA
10324533 TTTACTAA
1 TTTACTAA
10324541 CAATTAATTT
Statistics
Matches: 138, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
66 27 0.20
67 1 0.01
68 110 0.80
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (68 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
AAA
Found at i:10324550 original size:16 final size:16
Alignment explanation
Indices: 10324529--10324570 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
10324519 AATAATTTGA
*
10324529 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
10324545 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
10324561 TAGTTTTAAT
1 TAATTTTAAT
10324571 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:10324554 original size:22 final size:22
Alignment explanation
Indices: 10324544--10324604 Score: 77
Period size: 22 Copynumber: 2.8 Consensus size: 22
10324534 TTACTAACAA
* * *
10324544 TTAATTTTAATAACAATTAGTT
1 TTAATTTTAATAAAAAATAATT
*
10324566 TTAATTTTATTAAAAAATAATT
1 TTAATTTTAATAAAAAATAATT
*
10324588 TTAATTTTAATTAAAAA
1 TTAATTTTAATAAAAAA
10324605 CGGGCCGGGC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (22 bp):
TTAATTTTAATAAAAAATAATT
Found at i:10326175 original size:2 final size:2
Alignment explanation
Indices: 10326168--10326197 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10326158 TTTAAAGATA
10326168 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10326198 TTTATGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10326966 original size:19 final size:19
Alignment explanation
Indices: 10326942--10327074 Score: 194
Period size: 19 Copynumber: 6.8 Consensus size: 19
10326932 AATTTTTGAG
10326942 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
10326961 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
10326980 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
10326999 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
10327020 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
10327039 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
10327058 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
10327075 GATTTAATTT
Statistics
Matches: 105, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
19 74 0.70
20 12 0.11
21 19 0.18
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:10327009 original size:59 final size:59
Alignment explanation
Indices: 10326943--10327074 Score: 212
Period size: 59 Copynumber: 2.3 Consensus size: 59
10326933 ATTTTTGAGG
*
10326943 ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATATGAT
* *
10327002 ATATGCAATCTTAGATATGATATGCAATCTTAGATATGATATATAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATATGAT
* *
10327061 -TTTGTAATCTTAGA
1 ATATGCAATCTTAGA
10327075 GATTTAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
58 12 0.18
59 56 0.82
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.39
Consensus pattern (59 bp):
ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATATGAT
Found at i:10327017 original size:40 final size:40
Alignment explanation
Indices: 10326942--10327074 Score: 202
Period size: 40 Copynumber: 3.4 Consensus size: 40
10326932 AATTTTTGAG
*
10326942 GATATGCAATCTTAGATATG--ATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
10326980 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
10327020 GATATGCAATCTTAGATATGATATAT--AATCTTAGATAT
1 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
* *
10327058 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
10327075 GATTTAATTT
Statistics
Matches: 89, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
38 34 0.38
39 12 0.13
40 43 0.48
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (40 bp):
GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
Found at i:10328565 original size:98 final size:98
Alignment explanation
Indices: 10328446--10328635 Score: 337
Period size: 98 Copynumber: 1.9 Consensus size: 98
10328436 AATAATAAAC
* *
10328446 GAAATATTCCGAGTTTGGGATT-TCAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTTAA
1 GAAATATTCCGAGTTTGGGATTCT-AAAGGAATCGTGCCATAACGTATTGGGTGTGATTTCTTAA
10328510 ATCTTGGATAAGTGGATGTTCTTTTAAAGTGAAG
65 ATCTTGGATAAGTGGATGTTCTTTTAAAGTGAAG
*
10328544 GAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCATAACGTATTGGGTGTGATTTCTTAAA
1 GAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCATAACGTATTGGGTGTGATTTCTTAAA
10328609 TCTTGGATAAGTGGATGTTCTTTTAAA
66 TCTTGGATAAGTGGATGTTCTTTTAAA
10328636 ATTTTATTGT
Statistics
Matches: 88, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
98 87 0.99
99 1 0.01
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.37
Consensus pattern (98 bp):
GAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCATAACGTATTGGGTGTGATTTCTTAAA
TCTTGGATAAGTGGATGTTCTTTTAAAGTGAAG
Found at i:10333212 original size:24 final size:23
Alignment explanation
Indices: 10333156--10333212 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 23
10333146 AAGAACTTCT
10333156 ATTTTATTAAAAATATAAAAATA
1 ATTTTATTAAAAATATAAAAATA
10333179 ATTTACTATT-AAAATATTAAAAATA
1 ATTT--TATTAAAAATA-TAAAAATA
10333204 ACTTTTATT
1 A-TTTTATT
10333213 TTATTAAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
23 4 0.13
24 10 0.33
25 13 0.43
26 3 0.10
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (23 bp):
ATTTTATTAAAAATATAAAAATA
Found at i:10335447 original size:30 final size:29
Alignment explanation
Indices: 10335413--10335470 Score: 98
Period size: 30 Copynumber: 2.0 Consensus size: 29
10335403 TAAAGACAGT
10335413 TTTGAGAAATTTAAGGAGAAATTTGAGAGC
1 TTTGAGAAATTTAAGGAGAAATTT-AGAGC
*
10335443 TTTGAGAAATTTAGGGAGAAATTTAGAG
1 TTTGAGAAATTTAAGGAGAAATTTAGAG
10335471 TTTTTTGCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 4 0.15
30 23 0.85
ACGTcount: A:0.40, C:0.02, G:0.28, T:0.31
Consensus pattern (29 bp):
TTTGAGAAATTTAAGGAGAAATTTAGAGC
Found at i:10346315 original size:17 final size:17
Alignment explanation
Indices: 10346293--10346332 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
10346283 ATTTCATTCA
10346293 TGTTTAA-AATTTTAATG
1 TGTTTAATAA-TTTAATG
*
10346310 TGTTTAATAATTTATTG
1 TGTTTAATAATTTAATG
10346327 TGTTTA
1 TGTTTA
10346333 TGTTTAAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 19 0.90
18 2 0.10
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.57
Consensus pattern (17 bp):
TGTTTAATAATTTAATG
Found at i:10348461 original size:188 final size:190
Alignment explanation
Indices: 10348144--10348549 Score: 504
Period size: 188 Copynumber: 2.1 Consensus size: 190
10348134 AGAAACGATG
* * * * *
10348144 AAAACAGTCACTATTTCGATCTTTTCTTTCCACTTTCTCGAATCCAGTGGAGAGAAAATAAAATC
1 AAAACAGTCGCTATTTCGATATTTTCTTTCCACTTTCTCGAATCCAG-GCAGAGAAAAGAAAATA
* *
10348209 ATCAACTAAATACCGATCTAAAAAGTTCAAAACAGAGATAAAAACCCATAGCCACAACACAAAAT
65 ATCAACCAAATACCGATCTAAAAAGTTCAAAACAGAAATAAAAACCCATAGCCACAACACAAAAT
* * * *
10348274 T-C-AAAAACCTCGGTAAGAAGTGATACTATATCG-ATATATATACAT-GAAAGCAGGATTA
130 TACAAAAAAACTCAGTAACAAGTGATACTATATCGAATATATATACATAG-AAGAAGGATTA
10348332 AAAACAGTCGCTATTTCGATATTTTCTTTCCACTTTCTCGAATCCA-GCA-AGTAAATAGAAAAT
1 AAAACAGTCGCTATTTCGATATTTTCTTTCCACTTTCTCGAATCCAGGCAGAG-AAA-AGAAAAT
* ** *
10348395 AAAATCAACCAAATACCGATCTAAAGAGTTCAAAAC-GCAAAT-AAATTCCGTAGCCACAACACA
64 --AATCAACCAAATACCGATCTAAAAAGTTCAAAACAG-AAATAAAAACCCATAGCCACAACACA
10348458 AAATTCAAAAGCAAAAAAACTCAGTAACAAGTGATACTATATCGATATATATATACATAGAAGAA
126 AAATT----A-CAAAAAAACTCAGTAACAAGTGATACTATATCGA-ATATATATACATAGAAGAA
10348523 GGATTA
185 GGATTA
10348529 AAAACAGTCGCTATTTCGATA
1 AAAACAGTCGCTATTTCGATA
10348550 GAAAAAAAAA
Statistics
Matches: 188, Mismatches: 15, Indels: 21
0.84 0.07 0.09
Matches are distributed among these distances:
185 2 0.01
186 5 0.03
187 6 0.03
188 68 0.36
189 34 0.18
194 1 0.01
195 28 0.15
197 43 0.23
198 1 0.01
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (190 bp):
AAAACAGTCGCTATTTCGATATTTTCTTTCCACTTTCTCGAATCCAGGCAGAGAAAAGAAAATAA
TCAACCAAATACCGATCTAAAAAGTTCAAAACAGAAATAAAAACCCATAGCCACAACACAAAATT
ACAAAAAAACTCAGTAACAAGTGATACTATATCGAATATATATACATAGAAGAAGGATTA
Found at i:10349627 original size:126 final size:126
Alignment explanation
Indices: 10349402--10349630 Score: 397
Period size: 126 Copynumber: 1.8 Consensus size: 126
10349392 ATTATTTCGA
* *
10349402 GTTGACGTTTCTGGTCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGGGAAGAAATTGT
1 GTTGACGTTTCTGGTCAAATAGTATAAAATCGCTTCTACCAGGATGCAATTTGAGAAGAAATTGT
*
10349467 GAAATCGCACCCTAGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
66 GAAATCGCACCCTAGTGGACACGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
10349528 GTTGACGTTTCTGAG-CAAATAGTATAAAATCGCTTCTACCAGGATGCAATTTGAGAAGAAATTG
1 GTTGACGTTTCTG-GTCAAATAGTATAAAATCGCTTCTACCAGGATGCAATTTGAGAAGAAATTG
* *
10349592 TGAAATCGCGCCCTCGTGGACACGATTTTGCTACAGTAG
65 TGAAATCGCACCCTAGTGGACACGATTTTGCTACAGTAG
10349631 CAAGTTTGGG
Statistics
Matches: 97, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
126 96 0.99
127 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.31
Consensus pattern (126 bp):
GTTGACGTTTCTGGTCAAATAGTATAAAATCGCTTCTACCAGGATGCAATTTGAGAAGAAATTGT
GAAATCGCACCCTAGTGGACACGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
Found at i:10351685 original size:11 final size:11
Alignment explanation
Indices: 10351669--10351693 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10351659 GCGAACGACG
10351669 ACAAGTGACCA
1 ACAAGTGACCA
10351680 ACAAGTGACCA
1 ACAAGTGACCA
10351691 ACA
1 ACA
10351694 TGCATAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.28, G:0.16, T:0.08
Consensus pattern (11 bp):
ACAAGTGACCA
Found at i:10352673 original size:54 final size:56
Alignment explanation
Indices: 10352510--10352711 Score: 279
Period size: 55 Copynumber: 3.6 Consensus size: 56
10352500 TAAAATTGTG
*
10352510 TAAAATTATTAAG-CCAAAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAAAC
1 TAAAATTATTAAGTCC--AAAAATTGTGTTAATGGTTAGTAAAATTTATAAAATAAAC
* **
10352567 TAAAATTATTAAGTCCAGAAATTGTGTTAATGGTTAGTAAAA-TTATCAAAAT-ATG
1 TAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTTAT-AAAATAAAC
* *
10352622 TAAAATTATTAAG-CCAAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAAC
1 TAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTTATAAAATAAAC
*
10352677 T-AAATTATTAAGTCCAAAAATTGTGTTAATAGTTA
1 TAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTA
10352712 CGGTTAGGGT
Statistics
Matches: 129, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
54 41 0.32
55 44 0.34
56 29 0.22
57 13 0.10
58 2 0.02
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.36
Consensus pattern (56 bp):
TAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTTATAAAATAAAC
Found at i:10352747 original size:29 final size:29
Alignment explanation
Indices: 10352713--10352884 Score: 209
Period size: 29 Copynumber: 5.6 Consensus size: 29
10352703 TAATAGTTAC
*
10352713 GGTTAGGGTTAGAGTTTTTAGTTAATTTA
1 GGTTAGGGTTAGGGTTTTTAGTTAATTTA
10352742 GGTTAGGGTTAGGGTTTTTAGTTAATTTA
1 GGTTAGGGTTAGGGTTTTTAGTTAATTTA
*
10352771 GGTTAGGGTTAGGGTTTTTGGTTAATTTA
1 GGTTAGGGTTAGGGTTTTTAGTTAATTTA
**
10352800 GGTTAGATTTAGGGTTAGGGTTTTTAGTTAGGTTA
1 -G---G--TTAGGGTTAGGGTTTTTAGTTAATTTA
* *
10352835 GGTTAGGGTTAGGGTTTTTAATTAAGTTA
1 GGTTAGGGTTAGGGTTTTTAGTTAATTTA
10352864 GGTTAGGTTAGTTAGGGTTTT
1 GGTTAGG---GTTAGGGTTTT
10352885 CAATTAAATT
Statistics
Matches: 127, Mismatches: 7, Indels: 15
0.85 0.05 0.10
Matches are distributed among these distances:
29 88 0.69
30 1 0.01
31 1 0.01
32 11 0.09
33 1 0.01
34 1 0.01
35 24 0.19
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (29 bp):
GGTTAGGGTTAGGGTTTTTAGTTAATTTA
Found at i:10352812 original size:64 final size:62
Alignment explanation
Indices: 10352707--10352884 Score: 224
Period size: 64 Copynumber: 2.9 Consensus size: 62
10352697 TTGTGTTAAT
*
10352707 AGTTACGGTTAGGGTTAGAGTTTTTAGTTAATTTA-G---GTTAGGGTTAGGGTTTTTAGTTA
1 AGTTA-GGTTAGGGTTAGGGTTTTTAGTTAATTTAGGTTAGTTAGGGTTAGGGTTTTTAGTTA
* *
10352766 ATTTAGGTTAGGGTTAGGGTTTTTGGTTAATTTAGGTTAGATTTAGGGTTAGGGTTTTTAGTTA
1 AGTTAGGTTAGGGTTAGGGTTTTTAGTTAATTTAGGTTAG--TTAGGGTTAGGGTTTTTAGTTA
* * *
10352830 GGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGTTA--GTTAGGGTTTT
1 AGTTAGGTTAGGGTTAGGGTTTTTAGTTAATTTAGGTTA-GTTAGGGTTAGGGTTTT
10352885 CAATTAAATT
Statistics
Matches: 104, Mismatches: 8, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
58 27 0.26
59 5 0.05
61 11 0.11
62 1 0.01
63 3 0.03
64 56 0.54
65 1 0.01
ACGTcount: A:0.21, C:0.01, G:0.32, T:0.47
Consensus pattern (62 bp):
AGTTAGGTTAGGGTTAGGGTTTTTAGTTAATTTAGGTTAGTTAGGGTTAGGGTTTTTAGTTA
Found at i:10352975 original size:26 final size:25
Alignment explanation
Indices: 10352945--10352993 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
10352935 CTTCAAAAAT
10352945 TTCTATGCGTATTACATCAAATAAAC
1 TTCTAT-CGTATTACATCAAATAAAC
**
10352971 TTCTATTTTATTACATCAAATAA
1 TTCTATCGTATTACATCAAATAA
10352994 TAAATTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.41
Consensus pattern (25 bp):
TTCTATCGTATTACATCAAATAAAC
Found at i:10353436 original size:18 final size:18
Alignment explanation
Indices: 10353392--10353437 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
10353382 TATTCGGAAA
* *
10353392 AGGATACATGTAAGGGTT
1 AGGATACATATAAGGGCT
*
10353410 AGGGTACATATAAGGGCT
1 AGGATACATATAAGGGCT
*
10353428 AGGAAACATA
1 AGGATACATA
10353438 CCTGGCATCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.30, T:0.22
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:10354092 original size:7 final size:7
Alignment explanation
Indices: 10354082--10354106 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10354072 TTATATACAT
10354082 AATACTA
1 AATACTA
10354089 AATACTA
1 AATACTA
10354096 AATACTA
1 AATACTA
10354103 AATA
1 AATA
10354107 TCAATCCACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:10355090 original size:15 final size:16
Alignment explanation
Indices: 10355065--10355095 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
10355055 ATAATTATCT
10355065 AAAAATACTTAAATAA
1 AAAAATACTTAAATAA
10355081 AAAAAT-CTTAAATAA
1 AAAAATACTTAAATAA
10355096 TAATTACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAAATACTTAAATAA
Found at i:10355235 original size:21 final size:21
Alignment explanation
Indices: 10355196--10355235 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
10355186 TGAAAATATA
* **
10355196 AAAAAATTTAAAATTATTTTT
1 AAAAAATATAAAAAAATTTTT
10355217 AAAAAATATAAAAAAATTT
1 AAAAAATATAAAAAAATTT
10355236 ATAATTATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
AAAAAATATAAAAAAATTTTT
Found at i:10355247 original size:30 final size:31
Alignment explanation
Indices: 10355188--10355254 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
10355178 GCTATTGATG
10355188 AAAATATAAAAAAATTTAAAATTATTTTTAA
1 AAAATATAAAAAAATTTAAAATTATTTTTAA
*
10355219 AAAATATAAAAAAATTTATAATTA-TTTTAA
1 AAAATATAAAAAAATTTAAAATTATTTTTAA
10355249 AAAATA
1 AAAATA
10355255 GATTTGAGAG
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 12 0.34
31 23 0.66
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (31 bp):
AAAATATAAAAAAATTTAAAATTATTTTTAA
Found at i:10360961 original size:31 final size:30
Alignment explanation
Indices: 10360908--10360982 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 30
10360898 ATGGATAAAA
*
10360908 TTTTTAACA-AAAATAATAAATTTACT-TT
1 TTTTTAACATACAATAATAAATTTACTATT
10360936 TTAATTTAACATACAATAACT-AATTTACTATT
1 TT--TTTAACATACAATAA-TAAATTTACTATT
10360968 TTTTTAATCATACAA
1 TTTTTAA-CATACAA
10360983 CCTCCAAATA
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
28 2 0.05
30 12 0.30
31 21 0.52
32 5 0.12
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.45
Consensus pattern (30 bp):
TTTTTAACATACAATAATAAATTTACTATT
Found at i:10363536 original size:2 final size:2
Alignment explanation
Indices: 10363529--10363555 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10363519 GTGAATGTAC
10363529 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
10363556 AAACTAAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10365920 original size:31 final size:31
Alignment explanation
Indices: 10365882--10365950 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
10365872 TTGTGGTACC
*
10365882 AATGACTTAAATGAAAAATT-TCGAATAGTTT
1 AATGACTTAAAT-AAAAATTATCGAATAATTT
* *
10365913 AATGACTTGAATCAAAATTATCGAATAATTT
1 AATGACTTAAATAAAAATTATCGAATAATTT
*
10365944 GATGACT
1 AATGACT
10365951 ATTTAGTAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 6 0.18
31 27 0.82
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (31 bp):
AATGACTTAAATAAAAATTATCGAATAATTT
Found at i:10373358 original size:39 final size:39
Alignment explanation
Indices: 10373283--10373361 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
10373273 AAATGTGAAT
10373283 ATCTTCAAATTTCATCATCTTATAGCTAGAAACTAGCTC
1 ATCTTCAAATTTCATCATCTTATAGCTAGAAACTAGCTC
10373322 ATCTTCAAATTTCATCATCTTATAGCTAGAAACTAGCTC
1 ATCTTCAAATTTCATCATCTTATAGCTAGAAACTAGCTC
10373361 A
1 A
10373362 CCATAAAAGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.35
Consensus pattern (39 bp):
ATCTTCAAATTTCATCATCTTATAGCTAGAAACTAGCTC
Found at i:10381922 original size:31 final size:31
Alignment explanation
Indices: 10381868--10381939 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 31
10381858 ATTTATATTT
10381868 ATTATAAATTATAAATATGATTTATA-TATATAA
1 ATTA-AAATTATAAATA-GATTTATATTA-ATAA
*
10381901 ATTAAAATATATAAATA-ATTTATATTAATTA
1 ATTAAAAT-TATAAATAGATTTATATTAATAA
10381932 ATTAAAAT
1 ATTAAAAT
10381940 GCATTTAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
31 18 0.50
32 6 0.17
33 12 0.33
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (31 bp):
ATTAAAATTATAAATAGATTTATATTAATAA
Found at i:10382256 original size:31 final size:31
Alignment explanation
Indices: 10382195--10382261 Score: 84
Period size: 31 Copynumber: 2.1 Consensus size: 31
10382185 AGCCTTAATA
10382195 TTTAAAATATAATTTATATATTCAAATTAAAT
1 TTTAAAATATAATTTATATATT-AAATTAAAT
*
10382227 TTTAAAA-ATAATTTATATTAATT-ATTTAAAT
1 TTTAAAATATAATTTATA-T-ATTAAATTAAAT
10382258 TTTA
1 TTTA
10382262 TATTTTATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
31 21 0.66
32 8 0.25
33 3 0.09
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (31 bp):
TTTAAAATATAATTTATATATTAAATTAAAT
Found at i:10386912 original size:21 final size:21
Alignment explanation
Indices: 10386883--10386930 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
10386873 AAATTTACTT
** *
10386883 ATATATTGTACTTATATATAC
1 ATATATTGTAAATACATATAC
*
10386904 ATATTTTGTAAATACATATAC
1 ATATATTGTAAATACATATAC
10386925 ATATAT
1 ATATAT
10386931 AATTCATATT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.46
Consensus pattern (21 bp):
ATATATTGTAAATACATATAC
Found at i:10387658 original size:31 final size:31
Alignment explanation
Indices: 10387623--10387681 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
10387613 AATAGCCTAG
*
10387623 TAACTTAAATAAAAACTTTCGAATAATTTAA
1 TAACTTAAATAAAAACTTTCAAATAATTTAA
* * *
10387654 TAACTTAAATGAAATCTTTTAAATAATT
1 TAACTTAAATAAAAACTTTCAAATAATT
10387682 CAATGACTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.39
Consensus pattern (31 bp):
TAACTTAAATAAAAACTTTCAAATAATTTAA
Found at i:10388072 original size:78 final size:76
Alignment explanation
Indices: 10387989--10388163 Score: 305
Period size: 78 Copynumber: 2.3 Consensus size: 76
10387979 AAATTAGTCT
*
10387989 GATCCATATAGGTTATGTTTAGATTTATTTTGATTTAATTTTCATCATGTGATAAAAAATATTTA
1 GATCCATGTAGGTTATGTTTAGATTTATTTTGATTTAATTTTCATCATGTGAT-AAAAATA-TTA
10388054 AAAAAAATAATCC
64 AAAAAAATAATCC
10388067 GATCCATGTAGGTTATGTTTAGATTTATTTTGATTTAATTTTCATCATGTGATAAAAATATTAAA
1 GATCCATGTAGGTTATGTTTAGATTTATTTTGATTTAATTTTCATCATGTGATAAAAATATTAAA
**
10388132 AAATTTAATCC
66 AAAAATAATCC
10388143 GATCCATGTAGGTTATGTTTA
1 GATCCATGTAGGTTATGTTTA
10388164 TATCTGACTT
Statistics
Matches: 94, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
76 35 0.37
77 7 0.07
78 52 0.55
ACGTcount: A:0.36, C:0.08, G:0.13, T:0.43
Consensus pattern (76 bp):
GATCCATGTAGGTTATGTTTAGATTTATTTTGATTTAATTTTCATCATGTGATAAAAATATTAAA
AAAAATAATCC
Found at i:10391047 original size:26 final size:26
Alignment explanation
Indices: 10390995--10391047 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10390985 TTATATTTAA
* * *
10390995 AATTTTAAAATATTTTATGTATCATT
1 AATTTTAAAATAATTTATGAATAATT
10391021 AATTTTACAAATAATTTAT-AATAATT
1 AATTTTA-AAATAATTTATGAATAATT
10391047 A
1 A
10391048 TTTATACTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 13 0.57
27 10 0.43
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (26 bp):
AATTTTAAAATAATTTATGAATAATT
Found at i:10395815 original size:14 final size:15
Alignment explanation
Indices: 10395779--10395808 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10395769 ATTTCCGTCA
10395779 AATAT-ATAAAAATG
1 AATATAATAAAAATG
10395793 AATATAATAAAAATG
1 AATATAATAAAAATG
10395808 A
1 A
10395809 TTAAATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (15 bp):
AATATAATAAAAATG
Found at i:10396775 original size:19 final size:19
Alignment explanation
Indices: 10396751--10396787 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
10396741 GTAAAATATT
10396751 TTTTTTTG-TCTCAAAAGTA
1 TTTTTTTGTTC-CAAAAGTA
10396770 TTTTTTTGTTCCAAAAGT
1 TTTTTTTGTTCCAAAAGT
10396788 GTTTCTGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.24, C:0.11, G:0.11, T:0.54
Consensus pattern (19 bp):
TTTTTTTGTTCCAAAAGTA
Found at i:10398221 original size:19 final size:20
Alignment explanation
Indices: 10398199--10398236 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
10398189 CCCTACAAAT
10398199 TAAAAATAAA-TTAAAAAAC
1 TAAAAATAAATTTAAAAAAC
10398218 TAAAAATAAATTTAAAAAA
1 TAAAAATAAATTTAAAAAA
10398237 ATCTTTGTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (20 bp):
TAAAAATAAATTTAAAAAAC
Found at i:10400123 original size:78 final size:78
Alignment explanation
Indices: 10399948--10400490 Score: 670
Period size: 78 Copynumber: 7.0 Consensus size: 78
10399938 AAAAAAAATC
* * * * *
10399948 AATCAACTCATAATGCAAGAGGTGAGTTGAGCCTCGGGTCGCATGCCGAGGTATTCTTTTCAATT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTA-T-TTTTCAATT
* **
10400013 TTTACTTTTCAAAAA
64 TCTGTTTTTCAAAAA
* **
10400028 AATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCGGGTCGTACGCTGAGGTATTTTTCAATTTC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTTCAATTTC
10400093 TGTTTTTCAAAAA
66 TGTTTTTCAAAAA
* * *
10400106 AATCAACTCATAATGCGAGAGTTGAGTTGAGCCTCGGATCACACGCTGAGGTATTTTTCAATTTC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTTCAATTTC
10400171 TGTTTTTCAAAAA
66 TGTTTTTCAAAAA
* * *
10400184 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACACACTGAGGTATTTTTTAAATTT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTA-TTTTTCAATTT
*
10400249 CCGTTTTTC--AAA
65 CTGTTTTTCAAAAA
* * *
10400261 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACACTGAGGTATTTCTTTTAAAT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTA--T-TTTTCAAT
10400326 TTCTG-TTTTC--AAA
63 TTCTGTTTTTCAAAAA
* * *
10400339 AATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGT--CACG-TCGATGTATTTTTCAATTT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCT-GAGGTATTTTTCAATTT
* *
10400401 TTGGTTTTCAAAAA
65 CTGTTTTTCAAAAA
* * * * * *
10400415 AATCAACTTATATTGCGAGAGGTGAATTGAGCCTTGGGTCATATGCCGAGGTATTTTTCAATTTC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTTCAATTTC
*
10400480 TATTTTTCAAA
66 TGTTTTTCAAA
10400491 GGTCAACTCA
Statistics
Matches: 410, Mismatches: 43, Indels: 22
0.86 0.09 0.05
Matches are distributed among these distances:
73 11 0.03
74 6 0.01
75 1 0.00
76 45 0.11
77 54 0.13
78 215 0.52
79 31 0.08
80 47 0.11
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (78 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTTTTCAATTTC
TGTTTTTCAAAAA
Found at i:10400349 original size:233 final size:230
Alignment explanation
Indices: 10399948--10400502 Score: 724
Period size: 233 Copynumber: 2.4 Consensus size: 230
10399938 AAAAAAAATC
* * *
10399948 AATCAACTCATAATGCAAGAGGTGAGTTGAGCCTCGGGTCGCATGCCGAGGTATTCTTTTCAATT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATT-TTTTCAATT
* * * * *
10400013 TTTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCGGGTCGTACGCTGAG
65 TCTATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACACTGAG
* *
10400078 GTATTTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATAATGCGAGAGTTGAGTTGAGCCTCG-
128 GTATTTTTAAATTTCTGTTTTTC-AAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGA
*
10400142 GATCACACG-CTGAGGTATTTTTCAATTTCTGTTTTTCAAAAA
192 G-T--CACGTC-GAGGTATTTTTCAATTTCTGGTTTTCAAAAA
* ** * *
10400184 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACACACTGAGGTATTTTTTAAATTT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTTTCAATTT
**
10400249 CCGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACACTGAGGTA
66 CTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACACTGAGGTA
* *
10400314 TTTCTTTTAAATTTCTG-TTTTC-AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAG
131 --T-TTTTAAATTTCTGTTTTTCAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGAG
* *
10400377 TCACGTCGATGTATTTTTCAATTTTTGGTTTTCAAAAA
193 TCACGTCGAGGTATTTTTCAATTTCTGGTTTTCAAAAA
* * * *
10400415 AATCAACTTATATTGCGAGAGGTGAATTGAGCCTTGGGTCATATGCCGAGGTA-TTTTTCAATTT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTTTCAATTT
**
10400479 CTATTTTTCAAAGGTCAACTCATA
66 CTATTTTTCAAAAATCAACTCATA
10400503 ATTTGAGAAG
Statistics
Matches: 279, Mismatches: 35, Indels: 16
0.85 0.11 0.05
Matches are distributed among these distances:
230 30 0.11
231 77 0.28
232 1 0.00
233 90 0.32
234 1 0.00
235 20 0.07
236 60 0.22
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (230 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTTTCAATTT
CTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACACTGAGGTA
TTTTTAAATTTCTGTTTTTCAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGAGTCA
CGTCGAGGTATTTTTCAATTTCTGGTTTTCAAAAA
Found at i:10400358 original size:155 final size:153
Alignment explanation
Indices: 10399948--10400490 Score: 634
Period size: 155 Copynumber: 3.5 Consensus size: 153
10399938 AAAAAAAATC
* * *
10399948 AATCAACTCATAATGCAAGAGGTGAGTTGAGCCTCGGGTCGCATGCCGAGGTATTCTTTTCAATT
1 AATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTCTTTTCAATT
* * *
10400013 TTTACTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCGGG-TCGTACGCTGA
66 TCT-GTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTC--AC-CTGA
10400077 GGTATTTTTCAATTTCTGTTTTTCAAAAA
126 GGTATTTTTCAATTTCTGTTTTTC-AAAA
* * *
10400106 AATCAACTCATAATGCGAGAGTTGAGTTGAGCCTCGGATCACACGCTGAGGTA-T-TTTTCAATT
1 AATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTCTTTTCAATT
10400169 TCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTACACACTGAG
66 TCTG-TTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTT-CAC-CTGAG
* *
10400234 GTATTTTTTAAATTTCCGTTTTTC-AAA
127 GTA-TTTTTCAATTTCTGTTTTTCAAAA
* * *
10400261 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACACTGAGGTATTTCTTTTAAAT
1 AATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTA-TTCTTTTCAAT
* * * *
10400326 TTCTGTTTTC-AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAG-TCACGTCGATGT
65 TTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTCACCT-GAGGT
* *
10400389 ATTTTTCAATTTTTGGTTTTCAAAAA
129 ATTTTTCAATTTCTGTTTTTC-AAAA
* * * * ** * *
10400415 AATCAACTTATATTGCGAGAGGTGAATTGAGCCTTGGGTCATATGCCGAGGTA-T-TTTTCAATT
1 AATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTCTTTTCAATT
*
10400478 TCTATTTTTCAAA
66 TCT-GTTTTCAAA
10400491 GGTCAACTCA
Statistics
Matches: 337, Mismatches: 36, Indels: 29
0.84 0.09 0.07
Matches are distributed among these distances:
151 11 0.03
152 23 0.07
153 10 0.03
154 49 0.15
155 90 0.27
156 68 0.20
157 26 0.08
158 60 0.18
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (153 bp):
AATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTCTTTTCAATT
TCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTTCACCTGAGGTAT
TTTTCAATTTCTGTTTTTCAAAA
Found at i:10400579 original size:13 final size:13
Alignment explanation
Indices: 10400561--10400585 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10400551 TTTAGGCTTT
10400561 CAAAAAATATAAA
1 CAAAAAATATAAA
10400574 CAAAAAATATAA
1 CAAAAAATATAA
10400586 TAATTTTAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (13 bp):
CAAAAAATATAAA
Found at i:10401483 original size:4 final size:4
Alignment explanation
Indices: 10401474--10401511 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 4
10401464 GGCTGAACGG
10401474 GAAA GAAA GAAA GAAA GAAA -AAGA GAAA -AAA GAAA GAA
1 GAAA GAAA GAAA GAAA GAAA GAA-A GAAA GAAA GAAA GAA
10401512 GAAGGAAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
3 5 0.16
4 24 0.77
5 2 0.06
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:10401506 original size:23 final size:23
Alignment explanation
Indices: 10401474--10401528 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
10401464 GGCTGAACGG
10401474 GAAAGAAAGAAAGAAAGAA-AAAGA
1 GAAA-AAAGAAAG-AAGAAGAAAGA
*
10401498 GAAAAAAGAAAGAAGAAGGAAGA
1 GAAAAAAGAAAGAAGAAGAAAGA
*
10401521 AAAAAAAG
1 GAAAAAAG
10401529 GAGCAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 5 0.18
23 19 0.68
24 4 0.14
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (23 bp):
GAAAAAAGAAAGAAGAAGAAAGA
Found at i:10401507 original size:7 final size:7
Alignment explanation
Indices: 10401474--10401525 Score: 50
Period size: 7 Copynumber: 7.0 Consensus size: 7
10401464 GGCTGAACGG
10401474 GAAAGAAA
1 GAAA-AAA
10401482 GAAAGAAA
1 GAAA-AAA
10401490 GAAAAAGA
1 GAAAAA-A
10401498 GAAAAAA
1 GAAAAAA
*
10401505 GAAAGAA
1 GAAAAAA
**
10401512 GAAGGAA
1 GAAAAAA
10401519 GAAAAAA
1 GAAAAAA
10401526 AAGGAGCAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
7 20 0.51
8 19 0.49
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (7 bp):
GAAAAAA
Found at i:10401528 original size:19 final size:19
Alignment explanation
Indices: 10401477--10401528 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
10401467 TGAACGGGAA
*
10401477 AGAAAGAAAGAAAGAAAAAG
1 AGAAA-AAAAAAAGAAAAAG
* *
10401497 AGAAAAAAGAAAGAAGAAG
1 AGAAAAAAAAAAGAAAAAG
10401516 -GAAGAAAAAAAAG
1 AGAA-AAAAAAAAG
10401529 GAGCAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 3 0.10
19 21 0.72
20 5 0.17
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (19 bp):
AGAAAAAAAAAAGAAAAAG
Found at i:10402277 original size:18 final size:18
Alignment explanation
Indices: 10402249--10402571 Score: 168
Period size: 17 Copynumber: 17.8 Consensus size: 18
10402239 CTTAAAAAAA
10402249 TCGTG-TTTCAAAAATTT
1 TCGTGTTTTCAAAAATTT
10402266 TCGTGTTTTCAAAATAATTT
1 TCGTGTTTTC-AAA-AATTT
10402286 CTCGTG-TTTCAAAAAATTCCT
1 -TCGTGTTTTC-AAAAATT--T
* * *
10402307 T-GTTTTTTAAAAAAATT
1 TCGTGTTTTCAAAAATTT
* *
10402324 TCGAGTTTTCAAAAATTC
1 TCGTGTTTTCAAAAATTT
* *
10402342 TCATG-TTTCAAAAATCT
1 TCGTGTTTTCAAAAATTT
10402359 TCGTGTTTTC-AAAA-TT
1 TCGTGTTTTCAAAAATTT
* *
10402375 CCAGTG-TGTCAAAAATTT
1 TC-GTGTTTTCAAAAATTT
* *
10402393 TTGTGTTTTC-AAGATTT
1 TCGTGTTTTCAAAAATTT
* * *
10402410 CCTGTGTTTTCAAATATTC
1 TC-GTGTTTTCAAAAATTT
* *
10402429 TCGT-ATTTCGAAAATTT
1 TCGTGTTTTCAAAAATTT
* *
10402446 TCTTGTTTTAAAAAAAAATTT
1 TCGTGTTTT---CAAAAATTT
*
10402467 TCCGTG-TTTCATAAATTT
1 T-CGTGTTTTCAAAAATTT
* * *
10402485 CCGTGTTTTAAAAAAAATT
1 TCGTGTTTT-CAAAAATTT
*
10402504 TCGT-CTTTCAAAAATTT
1 TCGTGTTTTCAAAAATTT
* *
10402521 TCGTGTTTTTAAAAAATTGA
1 TCGTG-TTTTCAAAAATT-T
* * *
10402541 CCATG-TTTCATAAATTT
1 TCGTGTTTTCAAAAATTT
10402558 TCGTG-TTTCAAAAA
1 TCGTGTTTTCAAAAA
10402572 AAATCCTCGT
Statistics
Matches: 226, Mismatches: 55, Indels: 50
0.68 0.17 0.15
Matches are distributed among these distances:
16 5 0.02
17 79 0.35
18 62 0.27
19 40 0.18
20 20 0.09
21 17 0.08
22 3 0.01
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (18 bp):
TCGTGTTTTCAAAAATTT
Found at i:10402550 original size:37 final size:36
Alignment explanation
Indices: 10402242--10402587 Score: 158
Period size: 38 Copynumber: 9.5 Consensus size: 36
10402232 GGTACTTCTT
10402242 AAAAAAA-T-CGTGTTTCAAAAATTTTCGTGTTTTCA
1 AAAAAAATTCCGTGTTTCAAAAATTTTCGTGTTTT-A
* * * * * *
10402277 AAATAATTTCTCGTGTTTCAAAAAATTCCTTGTTTTTT
1 AAAAAAATTC-CGTGTTTCAAAAATTTTCGTG-TTTTA
* * * * *
10402315 AAAAAAATTTCGAGTTTTCAAAAATTCTCATG-TTTC
1 AAAAAAATTCCGTG-TTTCAAAAATTTTCGTGTTTTA
** * *
10402351 AAAAATCTT-CGTGTTTTC-AAAA-TTCCAGTG-TGT-
1 AAAAAAATTCCGTG-TTTCAAAAATTTTC-GTGTTTTA
* * ** * *
10402384 CAAAAATTTTTGTGTTTTC-AAGATTTCCTGTGTTTT-
1 AAAAAAATTCCGTG-TTTCAAAAATTTTC-GTGTTTTA
* * * * *
10402420 -CAAATATTCTCGTATTTCGAAAATTTTCTTGTTTTAA
1 AAAAAAATTC-CGTGTTTCAAAAATTTTCGTGTTTT-A
* *
10402457 AAAAAAATTTTCCGTGTTTCATAAATTTCCGTGTTTTA
1 AAAAAAA--TTCCGTGTTTCAAAAATTTTCGTGTTTTA
* *
10402495 AAAAAAATTTCGTCTTTCAAAAATTTTCGTGTTTT-
1 AAAAAAATTCCGTGTTTCAAAAATTTTCGTGTTTTA
* * * *
10402530 TAAAAAATTGACCATGTTTCATAAATTTTCGTGTTTCA
1 AAAAAAATT--CCGTGTTTCAAAAATTTTCGTGTTTTA
*
10402568 AAAAAAATCCTCGTGTTTCA
1 AAAAAAATTC-CGTGTTTCA
10402588 TTTTTTATCA
Statistics
Matches: 233, Mismatches: 58, Indels: 38
0.71 0.18 0.12
Matches are distributed among these distances:
33 8 0.03
34 19 0.08
35 43 0.18
36 47 0.20
37 32 0.14
38 57 0.24
39 24 0.10
40 3 0.01
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.44
Consensus pattern (36 bp):
AAAAAAATTCCGTGTTTCAAAAATTTTCGTGTTTTA
Found at i:10402563 original size:73 final size:74
Alignment explanation
Indices: 10402429--10402575 Score: 197
Period size: 73 Copynumber: 2.0 Consensus size: 74
10402419 TCAAATATTC
* * ** * *
10402429 TCGTATTTCGAAAATTTTCTTGTTTTAAAAAAAAATTTTCCGTGTTTCATAAATTTCCGTGTTTT
1 TCGTATTTCAAAAATTTTCGTGTTTT-AAAAAAAATTGACCATGTTTCATAAATTTCCGTGTTTC
10402494 AAAAAAAATT
65 AAAAAAAATT
* * *
10402504 TCGTCTTTCAAAAATTTTCGTGTTTT-TAAAAAATTGACCATGTTTCATAAATTTTCGTGTTTCA
1 TCGTATTTCAAAAATTTTCGTGTTTTAAAAAAAATTGACCATGTTTCATAAATTTCCGTGTTTCA
10402568 AAAAAAAT
66 AAAAAAAT
10402576 CCTCGTGTTT
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
73 40 0.63
75 23 0.37
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.44
Consensus pattern (74 bp):
TCGTATTTCAAAAATTTTCGTGTTTTAAAAAAAATTGACCATGTTTCATAAATTTCCGTGTTTCA
AAAAAAATT
Found at i:10402588 original size:37 final size:36
Alignment explanation
Indices: 10402427--10402588 Score: 148
Period size: 37 Copynumber: 4.4 Consensus size: 36
10402417 TTTCAAATAT
* *
10402427 TCTCGTATTTCGA-AAATTTTCTTGTTTTAAAAAAAAA
1 TCTCGTGTTTC-ATAAATTTTCGTGTTTT-AAAAAAAA
* *
10402464 TTTTCCGTGTTTCATAAATTTCCGTGTTTTAAAAAAAA
1 -TCT-CGTGTTTCATAAATTTTCGTGTTTTAAAAAAAA
* * * * *
10402502 TTTCGTCTTTCAAAAATTTTCGTGTTTTTAAAAAAT
1 TCTCGTGTTTCATAAATTTTCGTGTTTTAAAAAAAA
* *
10402538 TGAC-CATGTTTCATAAATTTTCGTGTTTCAAAAAAAA
1 T--CTCGTGTTTCATAAATTTTCGTGTTTTAAAAAAAA
10402575 TCCTCGTGTTTCAT
1 T-CTCGTGTTTCAT
10402589 TTTTTATCAA
Statistics
Matches: 101, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
36 30 0.30
37 40 0.40
38 11 0.11
39 20 0.20
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.44
Consensus pattern (36 bp):
TCTCGTGTTTCATAAATTTTCGTGTTTTAAAAAAAA
Found at i:10402623 original size:21 final size:20
Alignment explanation
Indices: 10402599--10402638 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
10402589 TTTTTATCAA
10402599 AAATTTTATGTTTTCAAAAAC
1 AAATTTTATGTTTT-AAAAAC
*
10402620 AAATTTTGTGTTTTAAAAA
1 AAATTTTATGTTTTAAAAA
10402639 TTTTCGTGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.45
Consensus pattern (20 bp):
AAATTTTATGTTTTAAAAAC
Found at i:10402680 original size:20 final size:20
Alignment explanation
Indices: 10402652--10402689 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
10402642 TCGTGTCTCG
*
10402652 AAAAGAAAATTCATGTTTTT
1 AAAAAAAAATTCATGTTTTT
*
10402672 AAAAAAAAATTCGTGTTT
1 AAAAAAAAATTCATGTTT
10402690 CAAAAATTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.05, G:0.11, T:0.37
Consensus pattern (20 bp):
AAAAAAAAATTCATGTTTTT
Found at i:10402695 original size:20 final size:20
Alignment explanation
Indices: 10402641--10402695 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
10402631 TTTAAAAATT
* * *
10402641 TTCGTGTCTCGAAAAGAAAA
1 TTCGTGTTTCAAAAAAAAAA
* **
10402661 TTCATGTTTTTAAAAAAAAA
1 TTCGTGTTTCAAAAAAAAAA
10402681 TTCGTGTTTCAAAAA
1 TTCGTGTTTCAAAAA
10402696 TTCTCGTGTT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.35
Consensus pattern (20 bp):
TTCGTGTTTCAAAAAAAAAA
Found at i:10402795 original size:35 final size:35
Alignment explanation
Indices: 10402717--10402814 Score: 112
Period size: 36 Copynumber: 2.7 Consensus size: 35
10402707 AATACGGTAC
* *
10402717 TTTTTAAAAAAA-TTGTGTTTCAAAATTTTCGTGT
1 TTTTAAAAAAAATTTGTGTTTCAAAATTTTCGTGA
10402751 TTTTAAAAAAAAATTTGTGTTTCTAAAATTCTT-GT-A
1 TTTT-AAAAAAAATTTGTGTTTC-AAAATT-TTCGTGA
10402787 TTTTAAAAAAAATTTCGTGTTTTCAAAA
1 TTTTAAAAAAAATTT-GTG-TTTCAAAA
10402815 AAAGAAAAAG
Statistics
Matches: 56, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
34 4 0.07
35 18 0.32
36 20 0.36
37 12 0.21
38 2 0.04
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (35 bp):
TTTTAAAAAAAATTTGTGTTTCAAAATTTTCGTGA
Found at i:10402814 original size:20 final size:20
Alignment explanation
Indices: 10402738--10402817 Score: 55
Period size: 20 Copynumber: 4.2 Consensus size: 20
10402728 ATTGTGTTTC
* *
10402738 AAAATTTTCGTGTTTTTAAAA
1 AAAAATTTCGTG-TTTTCAAA
10402759 AAAAATTT-GTG-TTTC---
1 AAAAATTTCGTGTTTTCAAA
* * *
10402774 TAAAA-TTCTTGTATTTTAAA
1 AAAAATTTCGTGT-TTTCAAA
10402794 AAAAATTTCGTGTTTTCAAA
1 AAAAATTTCGTGTTTTCAAA
10402814 AAAA
1 AAAA
10402818 GAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 15
0.66 0.12 0.22
Matches are distributed among these distances:
14 2 0.05
15 6 0.14
17 3 0.07
18 3 0.07
20 17 0.39
21 13 0.30
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (20 bp):
AAAAATTTCGTGTTTTCAAA
Found at i:10404002 original size:40 final size:41
Alignment explanation
Indices: 10403918--10404003 Score: 104
Period size: 40 Copynumber: 2.1 Consensus size: 41
10403908 TTCAACTATA
* *
10403918 GATTTTTGCTAATTTGGTTGCATATAAATTGACGAACAATT
1 GATTTTTGCTAATTTGGTTGCATATAAATTGACAAACAACT
* * *
10403959 GATTTTTGCTAATTTTG-TGCATATAAGTTG-CTAAACTACT
1 GATTTTTGCTAATTTGGTTGCATATAAATTGAC-AAACAACT
10403999 GATTT
1 GATTT
10404004 CCCAGATAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.03
40 22 0.56
41 16 0.41
ACGTcount: A:0.29, C:0.10, G:0.16, T:0.44
Consensus pattern (41 bp):
GATTTTTGCTAATTTGGTTGCATATAAATTGACAAACAACT
Found at i:10413669 original size:17 final size:18
Alignment explanation
Indices: 10413632--10413671 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
10413622 TATTGTTTAA
**
10413632 AAAATATTATGAAAATTT
1 AAAATATTATGAAAAACT
10413650 AAAATATT-TGAAAAACT
1 AAAATATTATGAAAAACT
10413667 AAAAT
1 AAAAT
10413672 TAATTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.33
Consensus pattern (18 bp):
AAAATATTATGAAAAACT
Found at i:10413725 original size:19 final size:20
Alignment explanation
Indices: 10413683--10413725 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
10413673 AATTTTTTTT
**
10413683 AAAAACAACAAAAATTAAAA
1 AAAAACAACAAAAAACAAAA
10413703 AAAAA-AACAAAAAACAAAGA
1 AAAAACAACAAAAAACAAA-A
10413723 AAA
1 AAA
10413726 GTAATATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.84, C:0.09, G:0.02, T:0.05
Consensus pattern (20 bp):
AAAAACAACAAAAAACAAAA
Found at i:10420957 original size:24 final size:25
Alignment explanation
Indices: 10420890--10420999 Score: 95
Period size: 25 Copynumber: 4.4 Consensus size: 25
10420880 GTACATGTAT
* *
10420890 GCTCATAAGAGCT-ATGAATCGGTAT
1 GCTCATACGAGCTGA-GAATCGGTAA
* * *
10420915 GCT-TTCACGAGCAGTGAATCGG-AA
1 GCTCAT-ACGAGCTGAGAATCGGTAA
10420939 GCTCATACGAGCTGAGAATCGGTAA
1 GCTCATACGAGCTGAGAATCGGTAA
*
10420964 GCTC-TCACGAGCTGTA-AATTGGTAA
1 GCTCAT-ACGAGCTG-AGAATCGGTAA
10420989 GCTCATACGAG
1 GCTCATACGAG
10421000 ATGTGGTGTG
Statistics
Matches: 69, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
24 20 0.29
25 47 0.68
26 2 0.03
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (25 bp):
GCTCATACGAGCTGAGAATCGGTAA
Found at i:10420962 original size:49 final size:50
Alignment explanation
Indices: 10420890--10420999 Score: 143
Period size: 49 Copynumber: 2.2 Consensus size: 50
10420880 GTACATGTAT
* * * *
10420890 GCTCATAAGAGCTATGAATCGGTATGCTTTCACGAGCAGTGAATCGG-AA
1 GCTCATACGAGCTATGAATCGGTAAGCTCTCACGAGCAGTAAATCGGTAA
* *
10420939 GCTCATACGAGCTGA-GAATCGGTAAGCTCTCACGAGCTGTAAATTGGTAA
1 GCTCATACGAGCT-ATGAATCGGTAAGCTCTCACGAGCAGTAAATCGGTAA
10420989 GCTCATACGAG
1 GCTCATACGAG
10421000 ATGTGGTGTG
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
49 39 0.74
50 14 0.26
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (50 bp):
GCTCATACGAGCTATGAATCGGTAAGCTCTCACGAGCAGTAAATCGGTAA
Found at i:10424163 original size:2 final size:2
Alignment explanation
Indices: 10424110--10424143 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
10424100 ATAGTGTATG
10424110 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10424144 AGGTTCGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10424753 original size:41 final size:41
Alignment explanation
Indices: 10424708--10424852 Score: 202
Period size: 41 Copynumber: 3.5 Consensus size: 41
10424698 GGCTCGATGC
** * * * *
10424708 CTAGCAGATTTAATGCCGGTGAATTATTTCAGACTTTATGT
1 CTAGCAGGCTTAAGGCCGGTGAAATAATTCAGACTTTAAGT
*
10424749 CTAGCAGGCTTAAGGTCGGTGAAATAATTCAGACTTTAAGT
1 CTAGCAGGCTTAAGGCCGGTGAAATAATTCAGACTTTAAGT
10424790 CTAGCAGGCTTAAGGCCGGTGAAATAATTCAGACTTTAAGT
1 CTAGCAGGCTTAAGGCCGGTGAAATAATTCAGACTTTAAGT
*
10424831 CTAGTAGGC-TAAGTGCCGGTGA
1 CTAGCAGGCTTAAG-GCCGGTGA
10424853 TCTGAATCAG
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
40 4 0.04
41 90 0.96
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (41 bp):
CTAGCAGGCTTAAGGCCGGTGAAATAATTCAGACTTTAAGT
Found at i:10424851 original size:82 final size:82
Alignment explanation
Indices: 10424707--10424935 Score: 216
Period size: 82 Copynumber: 2.8 Consensus size: 82
10424697 AGGCTCGATG
** * * * * *
10424707 CCTAGCAGATTTAATGCCGGTGAATTATTTCAGACTTTATGTCTAGCAGGCTTAAG-GTCGGTGA
1 CCTAGCAGGCTTAAGGCCGGTGAAATAATTCAGACTTTAAGTCTAGCAGGC-TAAGTGCCGGTGA
*
10424771 AAT-AATTCAGACTT-TAAG
65 AATGAA-TCAG-CTTATAAA
* * *
10424789 TCTAGCAGGCTTAAGGCCGGTGAAATAATTCAGACTTTAAGTCTAGTAGGCTAAGTGCCGGTGAT
1 CCTAGCAGGCTTAAGGCCGGTGAAATAATTCAGACTTTAAGTCTAGCAGGCTAAGTGCCGGTGAA
* *
10424854 CTGAATCAGGTTATAAA
66 ATGAATCAGCTTATAAA
** * * *
10424871 CCTAGCAGGC-TAAGTGCCGGTGATCTGAA-TCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTG
1 CCTAGCAGGCTTAAG-GCCGGTGAAAT-AATTCAGACTTTAAGTCTAGCAGGCTAAGTGCCGGTG
10424934 AA
64 AA
10424936 TATGTTAAAT
Statistics
Matches: 121, Mismatches: 21, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
81 10 0.08
82 107 0.88
83 4 0.03
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (82 bp):
CCTAGCAGGCTTAAGGCCGGTGAAATAATTCAGACTTTAAGTCTAGCAGGCTAAGTGCCGGTGAA
ATGAATCAGCTTATAAA
Found at i:10424881 original size:41 final size:41
Alignment explanation
Indices: 10424831--10424934 Score: 181
Period size: 41 Copynumber: 2.5 Consensus size: 41
10424821 GACTTTAAGT
* *
10424831 CTAGTAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAAC
*
10424872 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAAC
10424913 CTAGCAGGCTAAGTGCCGGTGA
1 CTAGCAGGCTAAGTGCCGGTGA
10424935 ATATGTTAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAAC
Found at i:10426986 original size:23 final size:23
Alignment explanation
Indices: 10426956--10427022 Score: 116
Period size: 23 Copynumber: 2.9 Consensus size: 23
10426946 GAATAGGAAC
*
10426956 AAGTATTAGAAGATGCGGTGTAG
1 AAGTATTAGAAGATGCAGTGTAG
*
10426979 AAGTATTAGAAGATGCAGTATAG
1 AAGTATTAGAAGATGCAGTGTAG
10427002 AAGTATTAGAAGATGCAGTGT
1 AAGTATTAGAAGATGCAGTGT
10427023 TTTACAAGCT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.39, C:0.04, G:0.30, T:0.27
Consensus pattern (23 bp):
AAGTATTAGAAGATGCAGTGTAG
Found at i:10427267 original size:57 final size:57
Alignment explanation
Indices: 10427193--10427307 Score: 194
Period size: 57 Copynumber: 2.0 Consensus size: 57
10427183 GAACTATGCC
*
10427193 AGTGTGATTGGAAAGTACTTTTTAAATAAGTACCAAGAGAGGTGAACTCGACTACTG
1 AGTGTGATTGGAAAGTACTCTTTAAATAAGTACCAAGAGAGGTGAACTCGACTACTG
* * *
10427250 AGTGTGATTTGAAAGTACTCTTTAAATAAGTACTAAGAGAGGTGAACTGGACTACTG
1 AGTGTGATTGGAAAGTACTCTTTAAATAAGTACCAAGAGAGGTGAACTCGACTACTG
10427307 A
1 A
10427308 TATTTTAGCT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.29
Consensus pattern (57 bp):
AGTGTGATTGGAAAGTACTCTTTAAATAAGTACCAAGAGAGGTGAACTCGACTACTG
Found at i:10430085 original size:24 final size:24
Alignment explanation
Indices: 10430051--10430096 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
10430041 ATTACACATA
*
10430051 CCTGTATATTCTTCTTATCATCTT
1 CCTGTACATTCTTCTTATCATCTT
10430075 CCTGTACATTCTTCTTATCATC
1 CCTGTACATTCTTCTTATCATC
10430097 ATTTCCAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.17, C:0.28, G:0.04, T:0.50
Consensus pattern (24 bp):
CCTGTACATTCTTCTTATCATCTT
Found at i:10434012 original size:11 final size:10
Alignment explanation
Indices: 10433988--10434033 Score: 51
Period size: 9 Copynumber: 4.5 Consensus size: 10
10433978 ACTTCTTGTT
10433988 ATTTTT-TGA
1 ATTTTTATGA
10433997 ATTTTTATGAA
1 ATTTTTATG-A
10434008 ATTTTTAT-A
1 ATTTTTATGA
10434017 ATTTCTTATTGA
1 ATTT-TTA-TGA
10434029 ATTTT
1 ATTTT
10434034 ATTTTTTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
9 11 0.34
10 5 0.16
11 11 0.34
12 5 0.16
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (10 bp):
ATTTTTATGA
Found at i:10434025 original size:21 final size:20
Alignment explanation
Indices: 10433988--10434033 Score: 51
Period size: 20 Copynumber: 2.2 Consensus size: 20
10433978 ACTTCTTGTT
10433988 ATTTTTTGAATTTTTA-TGAA
1 ATTTTTTGAATTTTTATTG-A
10434008 ATTTTTAT-AATTTCTTATTGA
1 ATTTTT-TGAATTT-TTATTGA
10434029 ATTTT
1 ATTTT
10434034 ATTTTTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
20 11 0.48
21 10 0.43
22 2 0.09
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (20 bp):
ATTTTTTGAATTTTTATTGA
Done.