Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55868233
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 983842 characters in sequence are not A, C, G, or T
File 37 of 187
Found at i:11696133 original size:81 final size:81
Alignment explanation
Indices: 11696019--11696182 Score: 249
Period size: 81 Copynumber: 2.0 Consensus size: 81
11696009 GACCGTAACA
* * *
11696019 CCCTGTAGGGTAAAATGACTGTAATGAGACTATAGGGTAAAATGACCGTAATGCCCTTGTAGGGT
1 CCCTGTAGGGTAAAATAACTATAATGACACTATAGGGTAAAATGACCGTAATGCCCTTGTAGGGT
11696084 AAAATGACCATAATGC
66 AAAATGACCATAATGC
* **
11696100 CCCTGTAGGGTAAAATAACTATAAT-ACCCCTATAGGGTAAAATGTTCGTAATGCCCTTGTAGGG
1 CCCTGTAGGGTAAAATAACTATAATGA-CACTATAGGGTAAAATGACCGTAATGCCCTTGTAGGG
*
11696164 TAAAATGACCGTAATGC
65 TAAAATGACCATAATGC
11696181 CC
1 CC
11696183 TAGTGGGTAA
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
80 1 0.01
81 74 0.99
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.26
Consensus pattern (81 bp):
CCCTGTAGGGTAAAATAACTATAATGACACTATAGGGTAAAATGACCGTAATGCCCTTGTAGGGT
AAAATGACCATAATGC
Found at i:11696294 original size:24 final size:24
Alignment explanation
Indices: 11696228--11696296 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
11696218 AAATGATTGT
* * *
11696228 TTTGTCTGTGGTT-AAATGACTGA
1 TTTGTCTGTGTTTGGAATGACTAA
*
11696251 TTTGTCTGTGTTTGGTATGACTAA
1 TTTGTCTGTGTTTGGAATGACTAA
*
11696275 TTTGTTTGTGATTT-GAATGACT
1 TTTGTCTGTG-TTTGGAATGACT
11696297 GATTCTAAGC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
23 12 0.32
24 23 0.61
25 3 0.08
ACGTcount: A:0.19, C:0.07, G:0.25, T:0.49
Consensus pattern (24 bp):
TTTGTCTGTGTTTGGAATGACTAA
Found at i:11696615 original size:32 final size:32
Alignment explanation
Indices: 11696468--11696672 Score: 162
Period size: 32 Copynumber: 6.4 Consensus size: 32
11696458 GCTACGATGC
* *
11696468 TACTGATGGCTTTGTGCCGATCATAGTACCGT
1 TACTGATGGCTTTGTACCGATCATATTACCGT
* * ** *
11696500 TACTGGTGGCTTTGTGCTAATCATAGTACCGT
1 TACTGATGGCTTTGTACCGATCATATTACCGT
* * *
11696532 TACTGATGGCTTTGTACAGATTATATTATCGT
1 TACTGATGGCTTTGTACCGATCATATTACCGT
* * *
11696564 TACCGATGG-TTATAG-ACCGATCATGTTACCAT
1 TACTGATGGCTT-T-GTACCGATCATATTACCGT
* * * *
11696596 TACTGATGGCTGTGTACCGATCATATCACTGC
1 TACTGATGGCTTTGTACCGATCATATTACCGT
* * * * ***
11696628 TACTGATGGCTGTGTGCCGACCATATCACTAC
1 TACTGATGGCTTTGTACCGATCATATTACCGT
11696660 TACTGATGGCTTT
1 TACTGATGGCTTT
11696673 TTGCAATCAC
Statistics
Matches: 142, Mismatches: 27, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
31 3 0.02
32 137 0.96
33 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.35
Consensus pattern (32 bp):
TACTGATGGCTTTGTACCGATCATATTACCGT
Found at i:11696808 original size:26 final size:26
Alignment explanation
Indices: 11696757--11696808 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
11696747 AACCCTTCTA
* * * *
11696757 ACTACTGGCAGCTCTGTTGCATTATT
1 ACTACTGGCAGCTATGCTACAATATT
11696783 ACTACTGGCAGCTATGCTACAATATT
1 ACTACTGGCAGCTATGCTACAATATT
11696809 GGTATGAGGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (26 bp):
ACTACTGGCAGCTATGCTACAATATT
Found at i:11713971 original size:23 final size:23
Alignment explanation
Indices: 11713941--11713990 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
11713931 TTTGGGCTAA
11713941 AATTTTGGTCCTACCCCAAAAGC
1 AATTTTGGTCCTACCCCAAAAGC
11713964 AATTTTGGTCCTACCCCAAAAGC
1 AATTTTGGTCCTACCCCAAAAGC
11713987 AATT
1 AATT
11713991 AGTATCTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.28
Consensus pattern (23 bp):
AATTTTGGTCCTACCCCAAAAGC
Found at i:11714395 original size:23 final size:23
Alignment explanation
Indices: 11714369--11714418 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
11714359 AAACAACAAG
* *
11714369 AAAATACCAAGAAAACAGTAAAA
1 AAAAAACCAACAAAACAGTAAAA
*
11714392 AAAAAAGCAACAAAACAGTAAAA
1 AAAAAACCAACAAAACAGTAAAA
11714415 AAAA
1 AAAA
11714419 CCAACAGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.74, C:0.12, G:0.08, T:0.06
Consensus pattern (23 bp):
AAAAAACCAACAAAACAGTAAAA
Found at i:11714416 original size:21 final size:22
Alignment explanation
Indices: 11714369--11714424 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
11714359 AAACAACAAG
* *
11714369 AAAATACCAAGAAAACAGTAAAA
1 AAAAAACCAACAAAACAGT-AAA
*
11714392 AAAAAAGCAACAAAACAGT-AA
1 AAAAAACCAACAAAACAGTAAA
11714413 AAAAAACCAACA
1 AAAAAACCAACA
11714425 GATTTTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 13 0.45
23 16 0.55
ACGTcount: A:0.71, C:0.16, G:0.07, T:0.05
Consensus pattern (22 bp):
AAAAAACCAACAAAACAGTAAA
Found at i:11716965 original size:23 final size:22
Alignment explanation
Indices: 11716935--11716980 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
11716925 ATCAACACAA
*
11716935 ATATAATCA-CATACATATTCAC
1 ATATAATCATCATA-ATAATCAC
11716957 ATATCAATCATCATAATAATCAC
1 ATAT-AATCATCATAATAATCAC
11716980 A
1 A
11716981 AGTTCTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 13 0.62
24 4 0.19
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (22 bp):
ATATAATCATCATAATAATCAC
Found at i:11717773 original size:21 final size:21
Alignment explanation
Indices: 11717744--11717783 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
11717734 CATTTAAAAT
* *
11717744 ATCACTATTATTTATTATTTA
1 ATCAATATTATTAATTATTTA
11717765 ATCAATATTATTAATTATT
1 ATCAATATTATTAATTATT
11717784 ATCAAGAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (21 bp):
ATCAATATTATTAATTATTTA
Found at i:11721797 original size:18 final size:18
Alignment explanation
Indices: 11721744--11721797 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
11721734 AAAATAAAAA
*
11721744 AACGTTTTGAAATTGAAT
1 AACGTTTTGAAAATGAAT
* *
11721762 AACGATTTGTAAATGAAT
1 AACGTTTTGAAAATGAAT
* *
11721780 AATGTTTTGAAAACGAAT
1 AACGTTTTGAAAATGAAT
11721798 GACACGATTT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.43, C:0.06, G:0.17, T:0.35
Consensus pattern (18 bp):
AACGTTTTGAAAATGAAT
Found at i:11725013 original size:27 final size:27
Alignment explanation
Indices: 11724945--11725379 Score: 305
Period size: 27 Copynumber: 16.2 Consensus size: 27
11724935 GATTCTTGGG
** *
11724945 AAAATTA-TGGAAATACCCTCAAAAGGT
1 AAAATTACT-GAAATACCCTTGAAGGGT
*
11724972 -AATTTACTGAAATACCCTTGAAGGGT
1 AAAATTACTGAAATACCCTTGAAGGGT
* *
11724998 AAGATTACTGAAATA-CCTTCAATGGGT
1 AAAATTACTGAAATACCCTTGAA-GGGT
* ** *
11725025 AAAATTACCGAAATACCCTCAAAAGGT
1 AAAATTACTGAAATACCCTTGAAGGGT
* * *
11725052 AAGATTACCGAAATACCCTCGACA-GGT
1 AAAATTACTGAAATACCCTTGA-AGGGT
* *
11725079 AAAATTTCTGAAATA-CCTCTGAAAGGT
1 AAAATTACTGAAATACCCT-TGAAGGGT
* *
11725106 AAAATTACTAAAATACCCTTGATGGGT
1 AAAATTACTGAAATACCCTTGAAGGGT
* *
11725133 AATATTACTGAAATACCTTTGAAGGGT
1 AAAATTACTGAAATACCCTTGAAGGGT
* **
11725160 AAACTTA-TCGAAATACCCCCGAAGGGT
1 AAAATTACT-GAAATACCCTTGAAGGGT
* * *
11725187 AAAATTACCGAAATACCCTAGATGGGT
1 AAAATTACTGAAATACCCTTGAAGGGT
*
11725214 AAAATTACCT-AAATACCC-TAAAGGGT
1 AAAATTA-CTGAAATACCCTTGAAGGGT
* * * * *
11725240 AAAATGACCGAAATATCCTCGATGGGT
1 AAAATTACTGAAATACCCTTGAAGGGT
* * *
11725267 AAAATTATTGAAATACTCTCGAAGGGT
1 AAAATTACTGAAATACCCTTGAAGGGT
* * * * *
11725294 AAAATGA-TCAAAATACCCTCGATGGGA
1 AAAATTACT-GAAATACCCTTGAAGGGT
** * *
11725321 AAAATTACCAAAATACCCCTAAAGGGT
1 AAAATTACTGAAATACCCTTGAAGGGT
* * * *
11725348 AGAATGACCGTAATACCCTT-ATAGGGT
1 AAAATTACTGAAATACCCTTGA-AGGGT
11725375 AAAAT
1 AAAAT
11725380 GACCATTATA
Statistics
Matches: 322, Mismatches: 70, Indels: 32
0.76 0.17 0.08
Matches are distributed among these distances:
25 1 0.00
26 51 0.16
27 260 0.81
28 10 0.03
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGAAGGGT
Found at i:11725618 original size:26 final size:26
Alignment explanation
Indices: 11725584--11725678 Score: 102
Period size: 26 Copynumber: 3.7 Consensus size: 26
11725574 AATACTGTTG
11725584 CTGGCAGCTTTGCTGCGTTACCGATA
1 CTGGCAGCTTTGCTGCGTTACCGATA
* * * * *
11725610 CTGGTAGCTCTGTTGCGTTACTGTTA
1 CTGGCAGCTTTGCTGCGTTACCGATA
* * *
11725636 TTGGCAGCTTTGCTGCATTA-CTATTA
1 CTGGCAGCTTTGCTGCGTTACCGA-TA
11725662 CTGGCAGCTTTGCTGCG
1 CTGGCAGCTTTGCTGCG
11725679 ATATTGGTAT
Statistics
Matches: 53, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.14, C:0.23, G:0.26, T:0.37
Consensus pattern (26 bp):
CTGGCAGCTTTGCTGCGTTACCGATA
Found at i:11725858 original size:30 final size:29
Alignment explanation
Indices: 11725798--11725900 Score: 118
Period size: 30 Copynumber: 3.5 Consensus size: 29
11725788 GAATATTTTT
*
11725798 TTGGGCTAAGGCCCACA-CTGATACTGTA
1 TTGGGCTAAGGCCCACACCTGATATTGTA
*
11725826 TTGGGCTAAGGCCCACACTCTGTTATTGTA
1 TTGGGCTAAGGCCCACAC-CTGATATTGTA
* * *
11725856 TTGGGCTATGACCCACACACTGCTATTGTA
1 TTGGGCTAAGGCCCACAC-CTGATATTGTA
* *
11725886 TAGGGCTCAGGCCCA
1 TTGGGCTAAGGCCCA
11725901 GACTGATTCT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 17 0.27
30 46 0.73
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.27
Consensus pattern (29 bp):
TTGGGCTAAGGCCCACACCTGATATTGTA
Found at i:11727126 original size:16 final size:16
Alignment explanation
Indices: 11727105--11727142 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
11727095 GTGTGGAATT
11727105 AGGCTTTAAGTCTAGC
1 AGGCTTTAAGTCTAGC
11727121 AGGCTTTAAGTCTAGC
1 AGGCTTTAAGTCTAGC
11727137 AGGCTT
1 AGGCTT
11727143 CGTTCCAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (16 bp):
AGGCTTTAAGTCTAGC
Found at i:11734562 original size:16 final size:17
Alignment explanation
Indices: 11734527--11734558 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
11734517 ATATGGTAGA
11734527 AAATTGATTAAGTTATT
1 AAATTGATTAAGTTATT
11734544 AAATT-ATTAA-TTATT
1 AAATTGATTAAGTTATT
11734559 TAAAAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.33
16 5 0.33
17 5 0.33
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (17 bp):
AAATTGATTAAGTTATT
Found at i:11734809 original size:15 final size:14
Alignment explanation
Indices: 11734774--11734811 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
11734764 TCATATTATT
11734774 TTATAAAAAATATA
1 TTATAAAAAATATA
* *
11734788 AT-TAAAATATATA
1 TTATAAAAAATATA
11734801 TTATAAAAAAT
1 TTATAAAAAAT
11734812 CATTTATTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 2
0.76 0.16 0.08
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
TTATAAAAAATATA
Found at i:11735341 original size:14 final size:14
Alignment explanation
Indices: 11735322--11735367 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
11735312 GCAAATTAGA
11735322 AAAGAAAGAAAAGG
1 AAAGAAAGAAAAGG
11735336 AAAGAAAGAAAA--
1 AAAGAAAGAAAAGG
11735348 AAAGAAA-AAGAAGG
1 AAAGAAAGAA-AAGG
11735362 AAAGAA
1 AAAGAA
11735368 CGCACGACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
11 2 0.07
12 9 0.31
14 18 0.62
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (14 bp):
AAAGAAAGAAAAGG
Found at i:11735353 original size:22 final size:23
Alignment explanation
Indices: 11735319--11735367 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
11735309 CATGCAAATT
*
11735319 AGAAAAGAAAGAAAAGGAAAGAA
1 AGAAAAGAAAGAAAAAGAAAGAA
*
11735342 AGAAAA-AAAGAAAAAGAAGGAA
1 AGAAAAGAAAGAAAAAGAAAGAA
11735364 AGAA
1 AGAA
11735368 CGCACGACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (23 bp):
AGAAAAGAAAGAAAAAGAAAGAA
Found at i:11737713 original size:49 final size:49
Alignment explanation
Indices: 11737641--11737734 Score: 170
Period size: 49 Copynumber: 1.9 Consensus size: 49
11737631 TCAAGAATGG
*
11737641 ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACTAAGCTTAGCAATAT
1 ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGCTTAGCAATAT
*
11737690 ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGCA
1 ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGCTTAGCA
11737735 TTGCATAGCA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.43, C:0.09, G:0.26, T:0.23
Consensus pattern (49 bp):
ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGCTTAGCAATAT
Found at i:11738772 original size:13 final size:13
Alignment explanation
Indices: 11738754--11738778 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11738744 TAATATATTT
11738754 ATTAATTAAAAAC
1 ATTAATTAAAAAC
11738767 ATTAATTAAAAA
1 ATTAATTAAAAA
11738779 AAAGCTTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAC
Found at i:11740199 original size:10 final size:10
Alignment explanation
Indices: 11740170--11740200 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
11740160 GTGTTAATTG
*
11740170 CACCAAACTC
1 CACCAAACTT
11740180 CACCAAACTT
1 CACCAAACTT
11740190 CACCAAACTT
1 CACCAAACTT
11740200 C
1 C
11740201 GACCTATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.39, C:0.45, G:0.00, T:0.16
Consensus pattern (10 bp):
CACCAAACTT
Found at i:11742922 original size:23 final size:22
Alignment explanation
Indices: 11742882--11742925 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
11742872 ATTTTTTTAT
* *
11742882 TTTTTTGAGAATTTATATAATC
1 TTTTTTAAAAATTTATATAATC
11742904 TTTTTTAAAAATTTCATATAAT
1 TTTTTTAAAAATTT-ATATAAT
11742926 GATATAATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.55
Consensus pattern (22 bp):
TTTTTTAAAAATTTATATAATC
Found at i:11743719 original size:2 final size:2
Alignment explanation
Indices: 11743714--11743754 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
11743704 TATGTAAAAA
*
11743714 AT AT AT -T AT -T AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11743754 A
1 A
11743755 AAAGAATCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 2 0.06
2 33 0.94
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:11743733 original size:16 final size:17
Alignment explanation
Indices: 11743701--11743753 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 17
11743691 TGACTAAAAC
* *
11743701 TATTATGTAAA-AAATA
1 TATTATATAAATATATA
11743717 TATTAT-TAAATATATA
1 TATTATATAAATATATA
*
11743733 TATATATATATATATATA
1 TAT-TATATAAATATATA
11743751 TAT
1 TAT
11743754 AAAAGAATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 4 0.12
16 13 0.41
17 3 0.09
18 12 0.38
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (17 bp):
TATTATATAAATATATA
Found at i:11744462 original size:17 final size:17
Alignment explanation
Indices: 11744440--11744499 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 17
11744430 ATAATTATAA
11744440 TTTATATTTTCATTAAT
1 TTTATATTTTCATTAAT
*
11744457 TTTATATAATT--TTAAT
1 TTTATAT-TTTCATTAAT
11744473 TATTATATTTTTTCATTAAT
1 T-TTATA--TTTTCATTAAT
*
11744493 TGTATAT
1 TTTATAT
11744500 AATTTTAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 12
0.69 0.06 0.24
Matches are distributed among these distances:
16 6 0.18
17 13 0.38
18 4 0.12
19 5 0.15
20 6 0.18
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (17 bp):
TTTATATTTTCATTAAT
Found at i:11744474 original size:20 final size:20
Alignment explanation
Indices: 11744445--11744509 Score: 66
Period size: 20 Copynumber: 3.5 Consensus size: 20
11744435 TATAATTTAT
*
11744445 ATTTTCATTAATTTTATATA
1 ATTTTAATTAATTTTATATA
11744465 ATTTTAATT-A--TTATAT-
1 ATTTTAATTAATTTTATATA
* * *
11744481 TTTTTCATTAATTGTATATA
1 ATTTTAATTAATTTTATATA
11744501 ATTTTAATT
1 ATTTTAATT
11744510 GATATAATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
16 7 0.20
17 7 0.20
19 6 0.17
20 15 0.43
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.62
Consensus pattern (20 bp):
ATTTTAATTAATTTTATATA
Found at i:11744516 original size:15 final size:16
Alignment explanation
Indices: 11744488--11744517 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
11744478 TATTTTTTCA
11744488 TTAATTGTATATAATT
1 TTAATTGTATATAATT
11744504 TTAATTG-ATATAAT
1 TTAATTGTATATAAT
11744518 AACGAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (16 bp):
TTAATTGTATATAATT
Found at i:11744675 original size:2 final size:2
Alignment explanation
Indices: 11744628--11744656 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
11744618 ATAAAAAACA
11744628 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11744657 AATTTAGCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11745377 original size:21 final size:20
Alignment explanation
Indices: 11745335--11745394 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
11745325 AACTTATTTA
* **
11745335 TATTTTAATTAATCATGTTT
1 TATTTTAATTAATCTTAATT
11745355 TAGTTTTAATTAATCTTAATT
1 TA-TTTTAATTAATCTTAATT
* *
11745376 TA-CTTAATTAAGCTTAATT
1 TATTTTAATTAATCTTAATT
11745395 ATTAATTTCG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
19 15 0.44
20 2 0.06
21 17 0.50
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (20 bp):
TATTTTAATTAATCTTAATT
Found at i:11749050 original size:72 final size:72
Alignment explanation
Indices: 11748929--11749275 Score: 268
Period size: 72 Copynumber: 4.7 Consensus size: 72
11748919 AGATGGGCGT
* * * * *
11748929 TGAATTGCTACCAAAGCTTTTAGATGGTTCTACAATTGCCAACAG-GATGGGTACGAATATGCAG
1 TGAATTGCTACCAAAGCTTATAGAAGATTCTACAAGTGCTAA-AGAGATGGGTACGAATATGCAG
*
11748993 GTGAACAC
65 ATGAACAC
* * * * *
11749001 TGAATTGCTACCATATCTTATAGAAGATTCTACAAGTGCTAAAGAGATGGGTAAGACTATGGAGA
1 TGAATTGCTACCAAAGCTTATAGAAGATTCTACAAGTGCTAAAGAGATGGGTACGAATATGCAGA
*
11749066 TGAACAT
66 TGAACAC
* * *
11749073 TGAATTGTTACCAAAGCTTATAGAAGATTCTACAAGTCCTAAAGAGATGGGT-CGTAATATGGAG
1 TGAATTGCTACCAAAGCTTATAGAAGATTCTACAAGTGCTAAAGAGATGGGTACG-AATATGCA-
* * *
11749137 GAGTGGAGAA
64 GA-TGAACAC
* * * * * * * ** * *
11749147 TCGAATTGATATCAAAGCGTATAGAAGATTTTCCGAGTGCTAAAGAGATAGACATGAATATGGAG
1 T-GAATTGCTACCAAAGCTTATAGAAGATTCTACAAGTGCTAAAGAGATGGGTACGAATATGCAG
*
11749212 AAGGAGA-AC
65 -ATGA-ACAC
* ** * * *
11749221 GTTGAATTGATGTCAAAGCTTACAGAAGATTCTTCAAATGCTAAAGAGATGGGTA
1 --TGAATTGCTACCAAAGCTTATAGAAGATTCTACAAGTGCTAAAGAGATGGGTA
11749276 AGGATGTGGC
Statistics
Matches: 220, Mismatches: 45, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
71 3 0.01
72 112 0.51
73 2 0.01
74 8 0.04
75 93 0.42
76 2 0.01
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (72 bp):
TGAATTGCTACCAAAGCTTATAGAAGATTCTACAAGTGCTAAAGAGATGGGTACGAATATGCAGA
TGAACAC
Found at i:11749190 original size:75 final size:73
Alignment explanation
Indices: 11749017--11749274 Score: 263
Period size: 75 Copynumber: 3.5 Consensus size: 73
11749007 GCTACCATAT
* *
11749017 CTTATAGAAGATTCTACAAGTGCTAAAGAGATGGGTAAG-ACTATGGAGAT-GA-ACATTGAATT
1 CTTATAGAAGATTCTACAAGTGCTAAAGAGATGGGT-CGTAATATGGAGATGGAGA-ATTGAATT
* *
11749079 GTTACCAAAG
64 GATATCAAAG
* *
11749089 CTTATAGAAGATTCTACAAGTCCTAAAGAGATGGGTCGTAATATGGAGGAGTGGAGAATCGAATT
1 CTTATAGAAGATTCTACAAGTGCTAAAGAGATGGGTCGTAATATGGA-GA-TGGAGAATTGAATT
11749154 GATATCAAAG
64 GATATCAAAG
* * * * * * * *
11749164 CGTATAGAAGATTTTCCGAGTGCTAAAGAGAT-AGACATGAATATGGAGAAGGAGAACGTTGAAT
1 CTTATAGAAGATTCTACAAGTGCTAAAGAGATGGGTCGT-AATATGGAGATGGAGAA--TTGAAT
*
11749228 TGATGTCAAAG
63 TGATATCAAAG
* * *
11749239 CTTACAGAAGATTCTTCAAATGCTAAAGAGATGGGT
1 CTTATAGAAGATTCTACAAGTGCTAAAGAGATGGGT
11749275 AAGGATGTGG
Statistics
Matches: 152, Mismatches: 25, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
71 1 0.01
72 42 0.28
73 8 0.05
74 6 0.04
75 93 0.61
76 2 0.01
ACGTcount: A:0.38, C:0.11, G:0.26, T:0.26
Consensus pattern (73 bp):
CTTATAGAAGATTCTACAAGTGCTAAAGAGATGGGTCGTAATATGGAGATGGAGAATTGAATTGA
TATCAAAG
Found at i:11749495 original size:21 final size:21
Alignment explanation
Indices: 11749471--11749522 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
11749461 TTTTTCCAAG
* *
11749471 ATTTGATTTTTTCGGTTTTAA
1 ATTTGATTTTTTAGCTTTTAA
*
11749492 ATTTAGTTTTTTTAGCTTTTAA
1 ATTT-GATTTTTTAGCTTTTAA
*
11749514 ATTTTATTT
1 ATTTGATTT
11749523 ATTATATAGA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 7 0.28
22 18 0.72
ACGTcount: A:0.21, C:0.04, G:0.10, T:0.65
Consensus pattern (21 bp):
ATTTGATTTTTTAGCTTTTAA
Found at i:11751044 original size:27 final size:27
Alignment explanation
Indices: 11751004--11751081 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
11750994 TAGTATTGGC
*
11751004 GCCTATCTCAGAGGCGCCAATGGTGGT
1 GCCTATCTGAGAGGCGCCAATGGTGGT
* * * **
11751031 GCCTATCTGGGAGGCGCTATTATTGGT
1 GCCTATCTGAGAGGCGCCAATGGTGGT
11751058 GCC-ATACTGAGAGGCGCCAATGGT
1 GCCTAT-CTGAGAGGCGCCAATGGT
11751082 CTGATTTTTC
Statistics
Matches: 39, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
26 2 0.05
27 37 0.95
ACGTcount: A:0.19, C:0.23, G:0.33, T:0.24
Consensus pattern (27 bp):
GCCTATCTGAGAGGCGCCAATGGTGGT
Found at i:11751171 original size:18 final size:18
Alignment explanation
Indices: 11751138--11751186 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 18
11751128 AGAGAAACGG
11751138 AAGAAATAAGAAGGAAGCAA
1 AAGAAA-AA-AAGGAAGCAA
*
11751158 AAGAAAAAAAGGAAGGAA
1 AAGAAAAAAAGGAAGCAA
11751176 AAGAAGAAAAA
1 AAGAA-AAAAA
11751187 AATAAGGTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 14 0.52
19 7 0.26
20 6 0.22
ACGTcount: A:0.71, C:0.02, G:0.24, T:0.02
Consensus pattern (18 bp):
AAGAAAAAAAGGAAGCAA
Found at i:11751294 original size:17 final size:17
Alignment explanation
Indices: 11751260--11751295 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
11751250 TTTGAAAGTT
*
11751260 ATTTTGTTAGGTTATTA
1 ATTTTGTTAGCTTATTA
*
11751277 ATTTTGTTAGCTTCTTA
1 ATTTTGTTAGCTTATTA
11751294 AT
1 AT
11751296 GAAAAATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.22, C:0.06, G:0.14, T:0.58
Consensus pattern (17 bp):
ATTTTGTTAGCTTATTA
Found at i:11754188 original size:28 final size:28
Alignment explanation
Indices: 11754156--11754218 Score: 101
Period size: 27 Copynumber: 2.3 Consensus size: 28
11754146 AAATTGCAAA
*
11754156 ATAAAAAAAATATTATAATTTTATTTAC
1 ATAAAAAAAACATTATAATTTTATTTAC
*
11754184 AT-AAAAAACCATTATAATTTTATTTAC
1 ATAAAAAAAACATTATAATTTTATTTAC
11754211 ATAAAAAA
1 ATAAAAAA
11754219 TCATTACATA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 25 0.78
28 7 0.22
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (28 bp):
ATAAAAAAAACATTATAATTTTATTTAC
Found at i:11754216 original size:26 final size:27
Alignment explanation
Indices: 11754167--11754224 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
11754157 TAAAAAAAAT
11754167 ATTATAATTTTATTTACATAAAAAACC
1 ATTATAATTTTATTTACATAAAAAACC
*
11754194 ATTATAATTTTATTTACATAAAAAATC
1 ATTATAATTTTATTTACATAAAAAACC
11754221 ATTA
1 ATTA
11754225 CATAAATATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (27 bp):
ATTATAATTTTATTTACATAAAAAACC
Found at i:11756250 original size:16 final size:15
Alignment explanation
Indices: 11756219--11756262 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 15
11756209 ACAAAATCAA
11756219 ATAAAATTAAATTAT
1 ATAAAATTAAATTAT
*
11756234 ATAAAAGTTACATTAT
1 ATAAAA-TTAAATTAT
11756250 ATAAAAATTAAAT
1 AT-AAAATTAAAT
11756263 GAGTTAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 6 0.24
16 15 0.60
17 4 0.16
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (15 bp):
ATAAAATTAAATTAT
Found at i:11756450 original size:60 final size:60
Alignment explanation
Indices: 11756374--11756495 Score: 174
Period size: 60 Copynumber: 2.0 Consensus size: 60
11756364 ATACTAAACT
* * * * * *
11756374 AAACACAACAACTTATAGCTTAATCCTAAATTACTAATAAATTAAATT-TTAAATAATTAC
1 AAACACAAAAAATTATAACATAATCCTAAATTACTAACAAATT-AATTATAAAATAATTAC
11756434 AAACACAAAAAATTATAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATTAC
1 AAACACAAAAAATTATAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATTAC
11756494 AA
1 AA
11756496 TATTCATACA
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
59 4 0.07
60 51 0.93
ACGTcount: A:0.55, C:0.14, G:0.01, T:0.30
Consensus pattern (60 bp):
AAACACAAAAAATTATAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATTAC
Found at i:11756522 original size:29 final size:30
Alignment explanation
Indices: 11756489--11756550 Score: 108
Period size: 29 Copynumber: 2.1 Consensus size: 30
11756479 TTATAAAATA
11756489 ATTACAATATTCATAC-AAAAAATTACAAT
1 ATTACAATATTCATACAAAAAAATTACAAT
*
11756518 ATTACAATATTCATACAAAAAAATTGCAAT
1 ATTACAATATTCATACAAAAAAATTACAAT
11756548 ATT
1 ATT
11756551 CATATAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 16 0.52
30 15 0.48
ACGTcount: A:0.53, C:0.13, G:0.02, T:0.32
Consensus pattern (30 bp):
ATTACAATATTCATACAAAAAAATTACAAT
Found at i:11756548 original size:22 final size:22
Alignment explanation
Indices: 11756518--11756670 Score: 206
Period size: 22 Copynumber: 6.9 Consensus size: 22
11756508 AAATTACAAT
11756518 ATTACAATATTCATACAAAAAA
1 ATTACAATATTCATACAAAAAA
* *
11756540 ATTGCAATATTCATATAAAATTATAA
1 ATTACAATATTCATA-CAAA--A-AA
11756566 TATTACAATATTCATACAAAAAA
1 -ATTACAATATTCATACAAAAAA
11756589 ATTACAATATTCATAC---AAA
1 ATTACAATATTCATACAAAAAA
11756608 ATTACAATATTCATACAAAAAA
1 ATTACAATATTCATACAAAAAA
11756630 ATTACAATATTCATAC-AAAAA
1 ATTACAATATTCATACAAAAAA
*
11756651 ATTAGAATATTCATACAAAA
1 ATTACAATATTCATACAAAA
11756671 TTCTAATCCA
Statistics
Matches: 117, Mismatches: 5, Indels: 18
0.84 0.04 0.13
Matches are distributed among these distances:
19 19 0.16
21 20 0.17
22 52 0.44
23 5 0.04
24 1 0.01
25 1 0.01
26 5 0.04
27 14 0.12
ACGTcount: A:0.56, C:0.12, G:0.01, T:0.31
Consensus pattern (22 bp):
ATTACAATATTCATACAAAAAA
Found at i:11756568 original size:41 final size:41
Alignment explanation
Indices: 11756518--11756670 Score: 189
Period size: 41 Copynumber: 3.5 Consensus size: 41
11756508 AAATTACAAT
*
11756518 ATTACAATATTCATACAAAAAAATTGCAATATTCATATAAAATTATAA
1 ATTACAATATTCATACAAAAAAATTACAATATTC--AT--AA--A-AA
*
11756566 TATTACAATATTCATACAAAAAAATTACAATATTCATACAAA
1 -ATTACAATATTCATACAAAAAAATTACAATATTCATAAAAA
11756608 ATTACAATATTCATACAAAAAAATTACAATATTCATACAAAAA
1 ATTACAATATTCATACAAAAAAATTACAATATTCAT--AAAAA
*
11756651 ATTAGAATATTCATACAAAA
1 ATTACAATATTCATACAAAA
11756671 TTCTAATCCA
Statistics
Matches: 98, Mismatches: 4, Indels: 10
0.88 0.04 0.09
Matches are distributed among these distances:
41 36 0.37
42 2 0.02
43 24 0.24
45 1 0.01
47 2 0.02
49 33 0.34
ACGTcount: A:0.56, C:0.12, G:0.01, T:0.31
Consensus pattern (41 bp):
ATTACAATATTCATACAAAAAAATTACAATATTCATAAAAA
Found at i:11756568 original size:49 final size:49
Alignment explanation
Indices: 11756483--11756661 Score: 212
Period size: 49 Copynumber: 3.7 Consensus size: 49
11756473 AATTAATTAT
*
11756483 AAAATAATTACAATATTCATACAAAAAATTACAATATTACAATATTCATAC
1 AAAAAAATTACAATATTCAT--AAAAAATTACAATATTACAATATTCATAC
* * *
11756534 AAAAAAATTGCAATATTCATATAAAATTATAATATTACAATATTCATAC
1 AAAAAAATTACAATATTCATAAAAAATTACAATATTACAATATTCATAC
*
11756583 AAAAAAATTACAATATTC-------A-TACAAAATTACAATATTCATAC
1 AAAAAAATTACAATATTCATAAAAAATTACAATATTACAATATTCATAC
*
11756624 AAAAAAATTACAATATTCATACAAAAAATTAGAATATT
1 AAAAAAATTACAATATTCAT--AAAAAATTACAATATT
11756662 CATACAAAAT
Statistics
Matches: 109, Mismatches: 9, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
41 38 0.35
42 1 0.01
49 44 0.40
50 1 0.01
51 25 0.23
ACGTcount: A:0.56, C:0.12, G:0.01, T:0.31
Consensus pattern (49 bp):
AAAAAAATTACAATATTCATAAAAAATTACAATATTACAATATTCATAC
Found at i:11756756 original size:12 final size:12
Alignment explanation
Indices: 11756739--11756764 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
11756729 AAAAATTCAC
11756739 AATATCTTCTAA
1 AATATCTTCTAA
11756751 AATATCTTCTAA
1 AATATCTTCTAA
11756763 AA
1 AA
11756765 AATTCACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (12 bp):
AATATCTTCTAA
Found at i:11756890 original size:15 final size:14
Alignment explanation
Indices: 11756849--11756894 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
11756839 CTTTCTTCTT
* *
11756849 CTTCTTCTTCTCTT
1 CTTCTCCTTCTCTC
*
11756863 CGTCTCCTTCTCTC
1 CTTCTCCTTCTCTC
11756877 CTTCTCCTTTCTCTC
1 CTTCTCC-TTCTCTC
11756892 CTT
1 CTT
11756895 TTTTTTTCTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
14 17 0.63
15 10 0.37
ACGTcount: A:0.00, C:0.43, G:0.02, T:0.54
Consensus pattern (14 bp):
CTTCTCCTTCTCTC
Found at i:11756905 original size:15 final size:15
Alignment explanation
Indices: 11756865--11756894 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
11756855 CTTCTCTTCG
11756865 TCTCC-TTCTCTCCT
1 TCTCCTTTCTCTCCT
11756879 TCTCCTTTCTCTCCT
1 TCTCCTTTCTCTCCT
11756894 T
1 T
11756895 TTTTTTTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (15 bp):
TCTCCTTTCTCTCCT
Found at i:11762779 original size:16 final size:16
Alignment explanation
Indices: 11762720--11762789 Score: 52
Period size: 16 Copynumber: 4.3 Consensus size: 16
11762710 TGTTCATGTT
*
11762720 ATTTTAATTTTAAATTA
1 ATTTTAAATTTAAA-TA
* * * *
11762737 ACTTCAAACTTAAATC
1 ATTTTAAATTTAAATA
11762753 A-TTTAAGATTTAAATA
1 ATTTTAA-ATTTAAATA
* *
11762769 ATTTTAAATTTGAGTA
1 ATTTTAAATTTAAATA
11762785 ATTTT
1 ATTTT
11762790 GATGTCAAGT
Statistics
Matches: 41, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
15 4 0.10
16 22 0.54
17 15 0.37
ACGTcount: A:0.41, C:0.06, G:0.04, T:0.49
Consensus pattern (16 bp):
ATTTTAAATTTAAATA
Found at i:11762966 original size:16 final size:17
Alignment explanation
Indices: 11762921--11762976 Score: 62
Period size: 16 Copynumber: 3.4 Consensus size: 17
11762911 TTCCAATAAT
* *
11762921 TTCAAATAAATTTGA-A
1 TTCAAATTAATTTTAGA
11762937 TTCAAATTAATTTTAGA
1 TTCAAATTAATTTTAGA
**
11762954 TTCAAATTTTTTTTAG-
1 TTCAAATTAATTTTAGA
11762970 TTCAAAT
1 TTCAAAT
11762977 CAATCTGAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
16 20 0.57
17 15 0.43
ACGTcount: A:0.39, C:0.07, G:0.05, T:0.48
Consensus pattern (17 bp):
TTCAAATTAATTTTAGA
Found at i:11765128 original size:24 final size:24
Alignment explanation
Indices: 11765096--11765144 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
11765086 GATGCATAAG
*
11765096 AAAACCACCACATAGTCGTCATTT
1 AAAACCACCACATAATCGTCATTT
11765120 AAAACCACCACATAATCGTCATTT
1 AAAACCACCACATAATCGTCATTT
11765144 A
1 A
11765145 TATCATATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.41, C:0.29, G:0.06, T:0.24
Consensus pattern (24 bp):
AAAACCACCACATAATCGTCATTT
Found at i:11772518 original size:3 final size:3
Alignment explanation
Indices: 11772512--11772538 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
11772502 GAAGGGTAAG
11772512 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
11772539 GAACAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:11772628 original size:23 final size:21
Alignment explanation
Indices: 11772601--11772649 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 21
11772591 ATAAAAAGGG
11772601 TAATAAAT-AAATAGATAAATAGA
1 TAATAAATAAAATAG-T-AATA-A
11772624 TAAT-AATAAAATAGTAATAA
1 TAATAAATAAAATAGTAATAA
11772644 TAATAA
1 TAATAA
11772650 TGAAGGAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
20 5 0.21
21 5 0.21
22 4 0.17
23 10 0.42
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (21 bp):
TAATAAATAAAATAGTAATAA
Found at i:11772641 original size:14 final size:15
Alignment explanation
Indices: 11772617--11772646 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
11772607 ATAAATAGAT
11772617 AAATAGATAATAATA
1 AAATAGATAATAATA
11772632 AAATAG-TAATAATA
1 AAATAGATAATAATA
11772646 A
1 A
11772647 TAATGAAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (15 bp):
AAATAGATAATAATA
Found at i:11772698 original size:27 final size:25
Alignment explanation
Indices: 11772639--11772699 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 25
11772629 ATAAAATAGT
* *
11772639 AATAATAATAATGAAGGAAAAATAA
1 AATAATAATAATGAACGAAAAAAAA
*
11772664 AATAAATAATCGATGAACGAAAATAAAA
1 AAT-AATAAT-AATGAACGAAAA-AAAA
11772692 AATAATAA
1 AATAATAA
11772700 AATAATAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 3 0.10
26 6 0.20
27 15 0.50
28 6 0.20
ACGTcount: A:0.67, C:0.03, G:0.10, T:0.20
Consensus pattern (25 bp):
AATAATAATAATGAACGAAAAAAAA
Found at i:11772703 original size:32 final size:34
Alignment explanation
Indices: 11772656--11772728 Score: 87
Period size: 32 Copynumber: 2.2 Consensus size: 34
11772646 ATAATGAAGG
**
11772656 AAAAATAAAATAAATAATCGATGAACGAA-AATA
1 AAAAATAAAATAAATAATAAATGAACGAATAATA
* *
11772689 AAAAATAATA-AAATAATAAATGAAGGAATAATA
1 AAAAATAAAATAAATAATAAATGAACGAATAATA
11772722 AATAAAT
1 AA-AAAT
11772729 GAATGCAAGG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
32 15 0.44
33 15 0.44
34 4 0.12
ACGTcount: A:0.68, C:0.03, G:0.08, T:0.21
Consensus pattern (34 bp):
AAAAATAAAATAAATAATAAATGAACGAATAATA
Found at i:11772721 original size:23 final size:24
Alignment explanation
Indices: 11772692--11772779 Score: 75
Period size: 23 Copynumber: 3.9 Consensus size: 24
11772682 GAAAATAAAA
11772692 AATAATAAAAT-AATAAATGAAGG
1 AATAATAAAATAAATAAATGAAGG
*
11772715 AATAAT-AAATAAATGAATGCAAGG
1 AATAATAAAATAAATAAATG-AAGG
*
11772739 -AT--TAAAATAAAATAAATGAA-T
1 AATAATAAAAT-AAATAAATGAAGG
*
11772760 AA-AATAAAATGAAT-AATGAA
1 AATAATAAAATAAATAAATGAA
11772780 TAAATAAACA
Statistics
Matches: 54, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
21 7 0.13
22 14 0.26
23 29 0.54
24 4 0.07
ACGTcount: A:0.65, C:0.01, G:0.11, T:0.23
Consensus pattern (24 bp):
AATAATAAAATAAATAAATGAAGG
Found at i:11772746 original size:59 final size:58
Alignment explanation
Indices: 11772625--11772787 Score: 147
Period size: 59 Copynumber: 2.7 Consensus size: 58
11772615 ATAAATAGAT
* * *
11772625 AATAATAAAATAGTAATAATAAT-AATGAAGGAAAAATAAAATAAATAATCGATGAACGAA
1 AATAA-AAAATAATAA-AATAATAAATGAAGGAATAAT-AAATAAATAATCGAAGAACGAA
* **
11772685 AATAAAAAATAATAAAATAATAAATGAAGGAATAATAAATAAATGAAT-GCAAGGATTAA
1 AATAAAAAATAATAAAATAATAAATGAAGGAATAATAAATAAAT-AATCG-AAGAACGAA
*
11772744 AATAAAATAAATGAATAAAAT-A-AAATGAA-TAATGAATAAATAAA
1 AAT-AAA-AAAT-AATAAAATAATAAATGAAGGAAT-AATAAATAAA
11772788 CAAGTAAATA
Statistics
Matches: 89, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
58 15 0.17
59 36 0.40
60 25 0.28
61 5 0.06
62 8 0.09
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (58 bp):
AATAAAAAATAATAAAATAATAAATGAAGGAATAATAAATAAATAATCGAAGAACGAA
Found at i:11772771 original size:14 final size:13
Alignment explanation
Indices: 11772744--11772821 Score: 56
Period size: 14 Copynumber: 5.8 Consensus size: 13
11772734 CAAGGATTAA
11772744 AATAAAATAAATG
1 AATAAAATAAATG
11772757 AATAAAATAAAATG
1 AATAAAAT-AAATG
11772771 AATAATGAATAAAT-
1 AATAA--AATAAATG
*
11772785 AA-ACAAGTAAAT-
1 AATA-AAATAAATG
*
11772797 AA-ACAAATAAAGG
1 AATA-AAATAAATG
11772810 AAATAAAATAAA
1 -AATAAAATAAA
11772822 ATAAAAGCTT
Statistics
Matches: 55, Mismatches: 3, Indels: 13
0.77 0.04 0.18
Matches are distributed among these distances:
12 16 0.29
13 9 0.16
14 22 0.40
15 5 0.09
16 3 0.05
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.19
Consensus pattern (13 bp):
AATAAAATAAATG
Found at i:11772797 original size:12 final size:12
Alignment explanation
Indices: 11772778--11772807 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
11772768 ATGAATAATG
11772778 AATAAATAAACA
1 AATAAATAAACA
*
11772790 AGTAAATAAACA
1 AATAAATAAACA
11772802 AATAAA
1 AATAAA
11772808 GGAAATAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.73, C:0.07, G:0.03, T:0.17
Consensus pattern (12 bp):
AATAAATAAACA
Found at i:11774727 original size:44 final size:44
Alignment explanation
Indices: 11774679--11775173 Score: 332
Period size: 44 Copynumber: 10.9 Consensus size: 44
11774669 GGCTTTGTCA
*
11774679 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTAGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAG
* * * * * * * * *
11774723 CTTCAAACAGTTCCATTACAACTTCAGAGAGATTAGATTCATTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-AGTAG
* * * * *
11774768 CTTCAATATTCTCCATTGCAACTTCAGGGAGATAAGATTCACTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-AGTAG
11774813 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGCTATGGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-T---TA--GTAG
* * * * * * *
11774863 ATTTAATCTAAC-CTACTGCAACTTCAGAGG-TATAGGATTTGTCA-
1 CTTCAATCT-GCTCCACTGCAACTTCAG-GGAGATAAGATTAGT-AG
* * * *
11774907 CTTCAATCTACTCCACTGCTACTTAAGGGAGATAAGACTT-GTAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTAGTAG
* *
11774951 CTTCGATCTGCTCCACTGCAACTCCAGGGAGATAAGATTTGTAACTTGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-T-A---GTAG
* ** * * * *
11775002 CTTTAATCTATTCCACTACAACTTCAGGGAAATAAGATTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAG-TAG
* * * * *
11775047 CTTCAATTTGCTCTACTGCAACTTCAGGAAGATAAGATTTGTTG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAG
* * * * * *
11775091 TTTTAATCTGCTCCTCTACAACTTCAGGGAGATAAGATTTGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAG
* * * *
11775135 CTTTAATCTGCCCCACTGCATCTTCAGTGAGATAAGATT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
11775174 CACCACAATG
Statistics
Matches: 353, Mismatches: 76, Indels: 44
0.75 0.16 0.09
Matches are distributed among these distances:
43 5 0.01
44 164 0.46
45 112 0.32
46 3 0.01
48 2 0.01
49 3 0.01
50 28 0.08
51 36 0.10
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAGTAG
Found at i:11774790 original size:45 final size:45
Alignment explanation
Indices: 11774679--11774849 Score: 193
Period size: 45 Copynumber: 3.8 Consensus size: 45
11774669 GGCTTTGTCA
* * * * *
11774679 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATT-AGTAG
1 CTTCAATATGCTCCATTGCAACTTCAGGGAGATAAGATTCACTAT
* * * * * *
11774723 CTTCAA-ACAGTTCCATTACAACTTCAGAGAGATTAGATTCATTAT
1 CTTCAATA-TGCTCCATTGCAACTTCAGGGAGATAAGATTCACTAT
*
11774768 CTTCAATATTCTCCATTGCAACTTCAGGGAGATAAGATTCACTAT
1 CTTCAATATGCTCCATTGCAACTTCAGGGAGATAAGATTCACTAT
* *
11774813 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
1 CTTCAATATGCTCCATTGCAACTTCAGGGAGATAAGA
11774850 CTCGCTATGG
Statistics
Matches: 106, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
44 32 0.30
45 73 0.69
46 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (45 bp):
CTTCAATATGCTCCATTGCAACTTCAGGGAGATAAGATTCACTAT
Found at i:11775113 original size:140 final size:136
Alignment explanation
Indices: 11774680--11775132 Score: 404
Period size: 140 Copynumber: 3.3 Consensus size: 136
11774670 GCTTTGTCAC
* * * * *
11774680 TTCAATCTGCTCCACTACAACTTCAGGGAGATAAGA--T-TA--GTAGCTTCAAAC-AGTTCCAT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATGGTAGATTTAATCTA-TTCCAC
* * * *
11774739 TACAACTTCAGAGAGATTAGATTCAT-TATCTTCAATATTCTCCATTGCAACTTCAGGGAGATAA
65 TACAACTTCAGGGAAATAAGATT--TGTATCTTCAAT-TTCTCCACTGCAACTTCAGGGAGATAA
***
11774803 GATTCACTAT
127 GATTTGTTAT
* * *
11774813 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGCTATGGTAGATTTAATCTA-ACCT
1 -TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATGGTAGATTTAATCTATTCC-
* * * * * *
11774877 ACTGCAACTTCAGAGG-TATAGGATTTGTCA-CTTCAATCTACTCCACTGCTACTTAAGGGAGAT
63 ACTACAACTTCAG-GGAAATAAGATTTGT-ATCTTCAAT-TTCTCCACTGCAACTTCAGGGAGAT
* * *
11774940 AAGACTTGTAAC
125 AAGATTTGTTAT
* * * *
11774952 TTCGATCTGCTCCACTGCAACTCCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTATTCCA
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-A-TGGTAGATTTAATCTATTCCA
* *
11775017 CTACAACTTCAGGGAAATAAGATTTGCTATCTTCAATTTGCTCTACTGCAACTTCAGGAAGATAA
64 CTACAACTTCAGGGAAATAAGATTTG-TATCTTCAATTT-CTCCACTGCAACTTCAGGGAGATAA
*
11775082 GATTTGTTGT
127 GATTTGTTAT
* * *
11775092 TTTAATCTGCTCCTCTACAACTTCAGGGAGATAAGATTTGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT
11775133 GGCTTTAATC
Statistics
Matches: 254, Mismatches: 47, Indels: 30
0.77 0.14 0.09
Matches are distributed among these distances:
134 35 0.14
137 1 0.00
138 42 0.17
139 74 0.29
140 100 0.39
141 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (136 bp):
TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATGGTAGATTTAATCTATTCCACT
ACAACTTCAGGGAAATAAGATTTGTATCTTCAATTTCTCCACTGCAACTTCAGGGAGATAAGATT
TGTTAT
Found at i:11778306 original size:84 final size:84
Alignment explanation
Indices: 11778164--11778324 Score: 277
Period size: 84 Copynumber: 1.9 Consensus size: 84
11778154 CTTCTTGCTA
* *
11778164 ATGTAGTATATCACTCTTTTTTCCTTCTTGACTCATCGTGTCGGCCAAGCACGCATCCCATCGAA
1 ATGTAGTATATCACTCTTTTTTCCTTCCTGACTCATCGTGTCGGCCAAGCACGCATCCCATCAAA
11778229 TTCCCAAATACTACTAAGT
66 TTCCCAAATACTACTAAGT
* * *
11778248 ATGTAGTATATCACTCTTTTTTCCTTCCTGACTCATCGTGTTGGCCGAGCACGTATCCCATCAAA
1 ATGTAGTATATCACTCTTTTTTCCTTCCTGACTCATCGTGTCGGCCAAGCACGCATCCCATCAAA
11778313 TTCCCAAATACT
66 TTCCCAAATACT
11778325 GCCAAGTACA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 72 1.00
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.34
Consensus pattern (84 bp):
ATGTAGTATATCACTCTTTTTTCCTTCCTGACTCATCGTGTCGGCCAAGCACGCATCCCATCAAA
TTCCCAAATACTACTAAGT
Found at i:11780097 original size:15 final size:15
Alignment explanation
Indices: 11780059--11780097 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
11780049 TCCTTTCTTG
*
11780059 TTTCTTCTCCAGCTC
1 TTTCTTCTTCAGCTC
11780074 TTTCTTCTTCAGCTC
1 TTTCTTCTTCAGCTC
11780089 TTTCTTCTT
1 TTTCTTCTT
11780098 TTGAATCGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.05, C:0.33, G:0.05, T:0.56
Consensus pattern (15 bp):
TTTCTTCTTCAGCTC
Found at i:11783264 original size:19 final size:20
Alignment explanation
Indices: 11783242--11783292 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
11783232 GTCTTTTTGG
*
11783242 GAAATTTAATGCAGATG-AT
1 GAAATGTAATGCAGATGAAT
*
11783261 GAAATGTAATGCTGATGAAT
1 GAAATGTAATGCAGATGAAT
11783281 GAAATG-AATGCA
1 GAAATGTAATGCA
11783293 ATAAGAGGCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 20 0.71
20 8 0.29
ACGTcount: A:0.43, C:0.06, G:0.24, T:0.27
Consensus pattern (20 bp):
GAAATGTAATGCAGATGAAT
Found at i:11783688 original size:21 final size:22
Alignment explanation
Indices: 11783649--11783689 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
11783639 TTGCAGTGCG
* *
11783649 GCTTTGAGCTCTTCTATCTTTC
1 GCTTTGAGCACTTCAATCTTTC
11783671 GCTTT-AGCACTTCAATCTT
1 GCTTTGAGCACTTCAATCTT
11783690 GTTTAGACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.15, C:0.27, G:0.12, T:0.46
Consensus pattern (22 bp):
GCTTTGAGCACTTCAATCTTTC
Found at i:11786978 original size:3 final size:3
Alignment explanation
Indices: 11786970--11786998 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
11786960 AAAGGTAAGT
11786970 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
11786999 CAATAAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:11787084 original size:23 final size:21
Alignment explanation
Indices: 11787058--11787106 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 21
11787048 ATGAAAAGGG
11787058 TAATAAAT-AAATAGATAAATAGA
1 TAATAAATAAAATAG-T-AATA-A
11787081 TAAT-AATAAAATAGTAATAA
1 TAATAAATAAAATAGTAATAA
11787101 TAATAA
1 TAATAA
11787107 TAATAATGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
20 5 0.21
21 5 0.21
22 4 0.17
23 10 0.42
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (21 bp):
TAATAAATAAAATAGTAATAA
Found at i:11787088 original size:3 final size:3
Alignment explanation
Indices: 11787075--11787113 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
11787065 TAAATAGATA
*
11787075 AAT AGAT AAT AAT AA- AAT AGT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
11787114 GAAGGCATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.06
3 27 0.84
4 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:11787184 original size:4 final size:4
Alignment explanation
Indices: 11787175--11787322 Score: 68
Period size: 4 Copynumber: 36.5 Consensus size: 4
11787165 ATGAAGGGAT
* ** * * *
11787175 AATA AATA AATG AATA CAAGG ATTA AAATA AA-A AATAA AAAA AATA AATC
1 AATA AATA AATA AATA -AATA AATA AA-TA AATA AAT-A AATA AATA AATA
* * * * * *
11787225 AAT- AATA TATG AATA AATA AGTA AATG AACA AATA AATT AATAA AATCA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AAT-A AAT-A
** * * * *
11787274 AAGG AAT- AATG AATA AATA AACA AGTA AATA AGTA AATA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
11787321 AA
1 AA
11787323 AGAATTAAAA
Statistics
Matches: 103, Mismatches: 34, Indels: 14
0.68 0.23 0.09
Matches are distributed among these distances:
3 9 0.09
4 79 0.77
5 15 0.15
ACGTcount: A:0.67, C:0.03, G:0.07, T:0.22
Consensus pattern (4 bp):
AATA
Found at i:11788936 original size:16 final size:15
Alignment explanation
Indices: 11788917--11788952 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
11788907 ATTTATTATA
11788917 TTTTTGGTTTAATCC
1 TTTTTGGTTTAATCC
11788932 TTTTTGGTTTAATCC
1 TTTTTGGTTTAATCC
11788947 TTTTTG
1 TTTTTG
11788953 TTCTATTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.11, C:0.11, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTGGTTTAATCC
Found at i:11796362 original size:21 final size:22
Alignment explanation
Indices: 11796321--11796362 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
11796311 AATAACATAG
* *
11796321 TTTTGATAAATGCAGAAAAATC
1 TTTTAATAAATGCAAAAAAATC
11796343 TTTTAATAAATG-AAAAAAAT
1 TTTTAATAAATGCAAAAAAAT
11796363 TTGAACTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.33
Consensus pattern (22 bp):
TTTTAATAAATGCAAAAAAATC
Found at i:11803642 original size:13 final size:13
Alignment explanation
Indices: 11803614--11803656 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
11803604 TAGTTCATTC
*
11803614 AAAAAAATTATAT
1 AAAAAATTTATAT
11803627 AAAAACATTTAT-T
1 AAAAA-ATTTATAT
11803640 -AAAAATTTATAT
1 AAAAAATTTATAT
11803652 AAAAA
1 AAAAA
11803657 TTAAATGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
11 6 0.23
12 5 0.19
13 10 0.38
14 5 0.19
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (13 bp):
AAAAAATTTATAT
Found at i:11803643 original size:12 final size:12
Alignment explanation
Indices: 11803615--11803658 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
11803605 AGTTCATTCA
*
11803615 AAAAAATTATAT
1 AAAAATTTATAT
11803627 AAAAACATTTAT-T
1 -AAAA-ATTTATAT
11803640 AAAAATTTATAT
1 AAAAATTTATAT
11803652 AAAAATT
1 AAAAATT
11803659 AAATGAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 6 0.21
12 12 0.43
13 5 0.18
14 5 0.18
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (12 bp):
AAAAATTTATAT
Found at i:11816592 original size:21 final size:22
Alignment explanation
Indices: 11816566--11816608 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
11816556 TATTAAATAC
11816566 TTTTATT-TACATTTTC-CAAAA
1 TTTTATTATAC-TTTTCTCAAAA
11816587 TTTTATTATACTTTTCTCAAAA
1 TTTTATTATACTTTTCTCAAAA
11816609 ATCCAATATG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.33, C:0.14, G:0.00, T:0.53
Consensus pattern (22 bp):
TTTTATTATACTTTTCTCAAAA
Found at i:11817564 original size:27 final size:28
Alignment explanation
Indices: 11817533--11817585 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
11817523 AGTAAATATC
* *
11817533 TTATTTTCGTAATTAATTT-TTTTTACT
1 TTATTTTCATAATCAATTTATTTTTACT
*
11817560 TTATTTTTATAATCAATTTATTTTTA
1 TTATTTTCATAATCAATTTATTTTTA
11817586 ATATCATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 16 0.73
28 6 0.27
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.66
Consensus pattern (28 bp):
TTATTTTCATAATCAATTTATTTTTACT
Found at i:11820281 original size:27 final size:25
Alignment explanation
Indices: 11820249--11820317 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 25
11820239 AATTTAATGC
*
11820249 TAAAATTATATTTTAACTCTTTAAAAA
1 TAAAATTATATTTTAAC-C-TAAAAAA
* * *
11820276 TTAAATTTTAGTTTTGACCTAAAAAA
1 TAAAATTATA-TTTTAACCTAAAAAA
11820302 TAAAATTTATATTTTA
1 TAAAA-TTATATTTTA
11820318 GTCTTATAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
26 14 0.42
27 13 0.39
28 6 0.18
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.46
Consensus pattern (25 bp):
TAAAATTATATTTTAACCTAAAAAA
Found at i:11829216 original size:26 final size:26
Alignment explanation
Indices: 11829184--11829233 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
11829174 TTAATCAAAT
*
11829184 TAATCGATTTAATTGAATTATTTCAG
1 TAATCGATCTAATTGAATTATTTCAG
11829210 TAATCGATCTAATTGAATTATTTC
1 TAATCGATCTAATTGAATTATTTC
11829234 CGTCAGCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.46
Consensus pattern (26 bp):
TAATCGATCTAATTGAATTATTTCAG
Found at i:11829379 original size:62 final size:62
Alignment explanation
Indices: 11829282--11829406 Score: 232
Period size: 62 Copynumber: 2.0 Consensus size: 62
11829272 AGTTTTTTGA
*
11829282 ATTTTTAGTTAACGATTAATTCGGTTCAAGATCAAATAATTAACCGATTACTTAAAATTATT
1 ATTTTTAGTTAACGATTAATTCGGTTCAAAATCAAATAATTAACCGATTACTTAAAATTATT
*
11829344 ATTTTTAGTTAACGATTAATTCGGTTCAAAATCAAATAATTAACCGATTATTTAAAATTATT
1 ATTTTTAGTTAACGATTAATTCGGTTCAAAATCAAATAATTAACCGATTACTTAAAATTATT
11829406 A
1 A
11829407 ATAATAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.41
Consensus pattern (62 bp):
ATTTTTAGTTAACGATTAATTCGGTTCAAAATCAAATAATTAACCGATTACTTAAAATTATT
Found at i:11829729 original size:93 final size:93
Alignment explanation
Indices: 11829621--11829796 Score: 253
Period size: 93 Copynumber: 1.9 Consensus size: 93
11829611 TCTCAAACTC
** * *
11829621 AAAACAAAGTCTAGGTAGAGATGGTAATTTTTCGGATAATAAAAATACTATCCGTTGCGGATGCG
1 AAAACAAAGTCTAGGTAGAGATGACAATTTTTCGAATAATAAAAATACTATCCGATGCGGATGCG
*
11829686 TATTTAACCCCATGAATAATGGATAGTA
66 GATTTAACCCCATGAATAATGGATAGTA
* * * **
11829714 AAAACAAAGTTTAGGTAGAGATGACAATTTTTCGAATAGTAAAAATATTATTTGATGCGGATGCG
1 AAAACAAAGTCTAGGTAGAGATGACAATTTTTCGAATAATAAAAATACTATCCGATGCGGATGCG
*
11829779 GATTTAACCCCTTGAATA
66 GATTTAACCCCATGAATA
11829797 TCTCCATTAT
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (93 bp):
AAAACAAAGTCTAGGTAGAGATGACAATTTTTCGAATAATAAAAATACTATCCGATGCGGATGCG
GATTTAACCCCATGAATAATGGATAGTA
Found at i:11831399 original size:27 final size:25
Alignment explanation
Indices: 11831340--11831400 Score: 65
Period size: 24 Copynumber: 2.4 Consensus size: 25
11831330 AAAAATATAT
*
11831340 ATTTATAT-TATTTTTAATTTAATA
1 ATTTATATATATTTTTAATTTAAAA
11831364 ATTTA-ATATATTTTT-ATTTATTAAA
1 ATTTATATATATTTTTAATTTA--AAA
11831389 ATTTTATATATA
1 A-TTTATATATA
11831401 GAGTCACCTC
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
23 7 0.23
24 12 0.39
25 3 0.10
26 4 0.13
27 5 0.16
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
ATTTATATATATTTTTAATTTAAAA
Found at i:11835272 original size:21 final size:22
Alignment explanation
Indices: 11835235--11835277 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
11835225 CCAATTAACC
11835235 TAGCCCAAACACTAAGCCCAAT
1 TAGCCCAAACACTAAGCCCAAT
*
11835257 TAGCCTAAAC-CTAAGCCCAAT
1 TAGCCCAAACACTAAGCCCAAT
11835278 ACCCTGGCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.40, C:0.35, G:0.09, T:0.16
Consensus pattern (22 bp):
TAGCCCAAACACTAAGCCCAAT
Found at i:11838231 original size:2 final size:2
Alignment explanation
Indices: 11838226--11838250 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
11838216 AAAGACAAAT
11838226 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
11838251 TTCTTTCTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11838659 original size:15 final size:15
Alignment explanation
Indices: 11838630--11838699 Score: 54
Period size: 15 Copynumber: 4.7 Consensus size: 15
11838620 CTAGACATTA
11838630 AAAAAAGAAGAAGAAAG
1 AAAAAA-AAG-AGAAAG
*
11838647 AAAAAAAAGAGAACG
1 AAAAAAAAGAGAAAG
* *
11838662 ACAAAATAGA-AAA-
1 AAAAAAAAGAGAAAG
* *
11838675 AAAATAAAGAGAGAG
1 AAAAAAAAGAGAAAG
*
11838690 AAATAAAAGA
1 AAAAAAAAGA
11838700 ATTAAAAAAA
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
13 7 0.17
14 4 0.10
15 21 0.51
16 3 0.07
17 6 0.15
ACGTcount: A:0.74, C:0.03, G:0.19, T:0.04
Consensus pattern (15 bp):
AAAAAAAAGAGAAAG
Found at i:11838700 original size:28 final size:28
Alignment explanation
Indices: 11838640--11838711 Score: 69
Period size: 28 Copynumber: 2.6 Consensus size: 28
11838630 AAAAAAGAAG
11838640 AAGAAAGAAAAAAAAGAGAACGACAAAA
1 AAGAAAGAAAAAAAAGAGAACGACAAAA
*
11838668 TAGAAA-AAAAATAAAGAGAGA-GA-AATAA
1 AAGAAAGAAAAA-AAAGAGA-ACGACAA-AA
**
11838696 AAGAATTAAAAAAAAG
1 AAGAAAGAAAAAAAAG
11838712 TATATTTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
27 7 0.19
28 24 0.65
29 6 0.16
ACGTcount: A:0.74, C:0.03, G:0.17, T:0.07
Consensus pattern (28 bp):
AAGAAAGAAAAAAAAGAGAACGACAAAA
Found at i:11852218 original size:41 final size:40
Alignment explanation
Indices: 11852173--11852277 Score: 129
Period size: 41 Copynumber: 2.5 Consensus size: 40
11852163 ACAAATTCAA
* * *
11852173 CGGCACATAGCCCGCTAAACTTATAGCCTGATTCAGATCAC
1 CGGCA-ATAGCCTGCTAGACTTATAACCTGATTCAGATCAC
* **
11852214 CGGCATGTAGCCTGCTAGGTTTATAACCTGATTCAGATCAC
1 CGGCA-ATAGCCTGCTAGACTTATAACCTGATTCAGATCAC
11852255 CGGCAATTAGCCTGCTAGACTTA
1 CGGCAA-TAGCCTGCTAGACTTA
11852278 AAGTCTGAAA
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
CGGCAATAGCCTGCTAGACTTATAACCTGATTCAGATCAC
Found at i:11852708 original size:2 final size:2
Alignment explanation
Indices: 11852701--11852751 Score: 52
Period size: 2 Copynumber: 26.0 Consensus size: 2
11852691 CAATAACTTT
* * *
11852701 TA TA TA TA TA TG TA TA TA TA T- TC TA GCA T- TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
11852742 TA TA TA TA TA
1 TA TA TA TA TA
11852752 CATGCTTATT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
1 2 0.05
2 38 0.93
3 1 0.02
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (2 bp):
TA
Found at i:11859197 original size:41 final size:41
Alignment explanation
Indices: 11859152--11859256 Score: 149
Period size: 41 Copynumber: 2.6 Consensus size: 41
11859142 ACAAATTCAA
* *
11859152 CGGCACATAGCCCGCTAGACTTATAGCCTGATTCAGATCAC
1 CGGCACATAGCCTGCTAGACTTATAACCTGATTCAGATCAC
* **
11859193 CGGCACGTAGCCTGCTAGGTTTATAACCTGATTCAGATCAC
1 CGGCACATAGCCTGCTAGACTTATAACCTGATTCAGATCAC
11859234 CGGCA-ATTAGCCTGCTAGACTTA
1 CGGCACA-TAGCCTGCTAGACTTA
11859257 AAGTCTGAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (41 bp):
CGGCACATAGCCTGCTAGACTTATAACCTGATTCAGATCAC
Found at i:11859741 original size:2 final size:2
Alignment explanation
Indices: 11859734--11859770 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
11859724 TCATTTATGC
*
11859734 AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11859771 ACACTCATAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:11860083 original size:12 final size:12
Alignment explanation
Indices: 11860038--11860090 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
11860028 TAACTTTTAT
**
11860038 ATATATATATGT
1 ATATATATATAC
*
11860050 ATATATATTCTAGC
1 ATATATA-TATA-C
11860064 ATTATATATATAC
1 A-TATATATATAC
11860077 ATATATATATAC
1 ATATATATATAC
11860089 AT
1 AT
11860091 TTCTTATTCG
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
12 20 0.59
13 4 0.12
14 4 0.12
15 6 0.18
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.45
Consensus pattern (12 bp):
ATATATATATAC
Found at i:11869656 original size:20 final size:19
Alignment explanation
Indices: 11869607--11869665 Score: 52
Period size: 18 Copynumber: 3.2 Consensus size: 19
11869597 TAACAACACT
* *
11869607 TTTTTTATTTTTTTATAAA
1 TTTTGTATTTTTTTATATA
* *
11869626 TTTTG-AATTTTTTATATC
1 TTTTGTATTTTTTTATATA
11869644 TTTCTGTA--TTTTTATATA
1 TTT-TGTATTTTTTTATATA
11869662 TTTT
1 TTTT
11869666 AATAAATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
17 1 0.03
18 25 0.76
19 6 0.18
20 1 0.03
ACGTcount: A:0.22, C:0.03, G:0.03, T:0.71
Consensus pattern (19 bp):
TTTTGTATTTTTTTATATA
Found at i:11869863 original size:14 final size:15
Alignment explanation
Indices: 11869844--11869874 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
11869834 ATTAAGTGTA
11869844 AAAAAAAAGAA-AAG
1 AAAAAAAAGAAGAAG
11869858 AAAAAAAAGAAGAAG
1 AAAAAAAAGAAGAAG
11869873 AA
1 AA
11869875 GCAAGGTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAGAAG
Found at i:11871654 original size:22 final size:23
Alignment explanation
Indices: 11871611--11871657 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
11871601 GGCATCTCCA
*
11871611 TTTTTTCTTTCTTCTTCTTCTTC
1 TTTTTCCTTTCTTCTTCTTCTTC
* *
11871634 TTTTTCCTTTGTTTTTC-TCTTC
1 TTTTTCCTTTCTTCTTCTTCTTC
11871656 TT
1 TT
11871658 CTTCTACTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.00, C:0.23, G:0.02, T:0.74
Consensus pattern (23 bp):
TTTTTCCTTTCTTCTTCTTCTTC
Found at i:11874463 original size:13 final size:12
Alignment explanation
Indices: 11874446--11874502 Score: 53
Period size: 13 Copynumber: 4.4 Consensus size: 12
11874436 TTTTAATTTT
11874446 AAATTTTTTAAA
1 AAATTTTTTAAA
11874458 AGAATTTAATTTAAA
1 A-AATTT--TTTAAA
*
11874473 AAATGGTTTT-AA
1 AAAT-TTTTTAAA
11874485 AAATATTTTTAAA
1 AAAT-TTTTTAAA
11874498 AAATT
1 AAATT
11874503 ATTAAAACAA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
12 12 0.32
13 14 0.38
14 3 0.08
15 8 0.22
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (12 bp):
AAATTTTTTAAA
Found at i:11874493 original size:11 final size:11
Alignment explanation
Indices: 11874467--11874519 Score: 52
Period size: 12 Copynumber: 4.5 Consensus size: 11
11874457 AAGAATTTAA
11874467 TTTAAAAAATGGT
1 TTTAAAAAAT--T
11874480 TTTAAAAATATT
1 TTTAAAAA-ATT
11874492 TTTAAAAAATT
1 TTTAAAAAATT
* *
11874503 ATTAAAACAATA
1 TTTAAAA-AATT
11874515 TTTAA
1 TTTAA
11874520 TGTATTATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
11 9 0.26
12 16 0.46
13 8 0.23
14 2 0.06
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.42
Consensus pattern (11 bp):
TTTAAAAAATT
Found at i:11882637 original size:16 final size:17
Alignment explanation
Indices: 11882610--11882643 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
11882600 TAAATATATA
11882610 TTAAGTTTTTTTATGTT
1 TTAAGTTTTTTTATGTT
11882627 TTAAG-TTTTTTATGTT
1 TTAAGTTTTTTTATGTT
11882643 T
1 T
11882644 AAAAAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.18, C:0.00, G:0.12, T:0.71
Consensus pattern (17 bp):
TTAAGTTTTTTTATGTT
Found at i:11884709 original size:17 final size:18
Alignment explanation
Indices: 11884670--11884710 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
11884660 CTAAATCTAC
*
11884670 AATTCTGTTGTAAACAGG
1 AATTCTGTTATAAACAGG
*
11884688 AATTCTGTTATGAACA-G
1 AATTCTGTTATAAACAGG
11884705 AATTCT
1 AATTCT
11884711 TATCTCAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (18 bp):
AATTCTGTTATAAACAGG
Found at i:11886592 original size:93 final size:93
Alignment explanation
Indices: 11886399--11886584 Score: 363
Period size: 93 Copynumber: 2.0 Consensus size: 93
11886389 GGGGGAATAC
*
11886399 CTCGAGTACTCCTGGGAGGCAACACATATCTATTCTCTTCTAAATTAGACTCAGGCGCATTATCC
1 CTCGAGTACTCCTGGGAGGCAACACATATCTATTCTCTTCCAAATTAGACTCAGGCGCATTATCC
11886464 TGAGATTCTACATGAATAACTTCATCAG
66 TGAGATTCTACATGAATAACTTCATCAG
11886492 CTCGAGTACTCCTGGGAGGCAACACATATCTATTCTCTTCCAAATTAGACTCAGGCGCATTATCC
1 CTCGAGTACTCCTGGGAGGCAACACATATCTATTCTCTTCCAAATTAGACTCAGGCGCATTATCC
11886557 TGAGATTCTACATGAATAACTTCATCAG
66 TGAGATTCTACATGAATAACTTCATCAG
11886585 TGGGAGTATC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 92 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (93 bp):
CTCGAGTACTCCTGGGAGGCAACACATATCTATTCTCTTCCAAATTAGACTCAGGCGCATTATCC
TGAGATTCTACATGAATAACTTCATCAG
Found at i:11889613 original size:17 final size:18
Alignment explanation
Indices: 11889574--11889614 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
11889564 CTAAATCTAC
*
11889574 AATTCTGTTGTAAACAGG
1 AATTCTGTTATAAACAGG
*
11889592 AATTCTGTTATGAACA-G
1 AATTCTGTTATAAACAGG
11889609 AATTCT
1 AATTCT
11889615 TATCTCAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (18 bp):
AATTCTGTTATAAACAGG
Found at i:11890600 original size:92 final size:92
Alignment explanation
Indices: 11890494--11890708 Score: 376
Period size: 92 Copynumber: 2.3 Consensus size: 92
11890484 AAGCTACAAT
* *
11890494 TTTTAACCTATTTGTATATTTAATAAAATATGAATCTATTTGCATCAAAGTATGCATATAAGCTA
1 TTTTAACCTATTTGTATATTTAATAAAATATAAACCTATTTGCATCAAAGTATGCATATAAGCTA
*
11890559 CAATTTAGACAGCAAGTATGCATTTTG
66 CAATTTAAACAGCAAGTATGCATTTTG
* *
11890586 TTTTAACCAATTTGTATATTTAATAAAATATAAACCTATTTGTATCAAAGTATGCATATAAGCTA
1 TTTTAACCTATTTGTATATTTAATAAAATATAAACCTATTTGCATCAAAGTATGCATATAAGCTA
*
11890651 TAATTTAAACAGCAAGTATGCATTTTG
66 CAATTTAAACAGCAAGTATGCATTTTG
11890678 TTTTAACCTATTTGTATATTTAATAAAATAT
1 TTTTAACCTATTTGTATATTTAATAAAATAT
11890709 TTGTATATAT
Statistics
Matches: 116, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
92 116 1.00
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.41
Consensus pattern (92 bp):
TTTTAACCTATTTGTATATTTAATAAAATATAAACCTATTTGCATCAAAGTATGCATATAAGCTA
CAATTTAAACAGCAAGTATGCATTTTG
Found at i:11893348 original size:19 final size:18
Alignment explanation
Indices: 11893305--11893349 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
11893295 CTTATTTGTT
11893305 TACAAAAATATTTGATAA
1 TACAAAAATATTTGATAA
11893323 TACAAAAATATTTGATAA
1 TACAAAAATATTTGATAA
11893341 TACAAAAAT
1 TACAAAAAT
11893350 GTAAACTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.58, C:0.07, G:0.04, T:0.31
Consensus pattern (18 bp):
TACAAAAATATTTGATAA
Found at i:11893395 original size:9 final size:9
Alignment explanation
Indices: 11893381--11893424 Score: 74
Period size: 9 Copynumber: 5.1 Consensus size: 9
11893371 TTTTGTTACA
11893381 ACAATTAAT
1 ACAATTAAT
11893390 ACAATTAAT
1 ACAATTAAT
11893399 ACAATT-A-
1 ACAATTAAT
11893406 ACAATTAAT
1 ACAATTAAT
11893415 ACAATTAAT
1 ACAATTAAT
11893424 A
1 A
11893425 ATTTGATAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 6 0.18
8 2 0.06
9 25 0.76
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:11893411 original size:16 final size:16
Alignment explanation
Indices: 11893390--11893427 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
11893380 AACAATTAAT
11893390 ACAATTAATACAATTA
1 ACAATTAATACAATTA
11893406 ACAATTAATACAATTA
1 ACAATTAATACAATTA
*
11893422 ATAATT
1 ACAATT
11893428 TGATAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (16 bp):
ACAATTAATACAATTA
Found at i:11893518 original size:16 final size:16
Alignment explanation
Indices: 11893497--11893538 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
11893487 AATAATTTGA
*
11893497 TAATTTTACTAAAAAT
1 TAATTTTAATAAAAAT
*
11893513 TAATTTTAATAATAAT
1 TAATTTTAATAAAAAT
*
11893529 TAGTTTTAAT
1 TAATTTTAAT
11893539 TTTATCAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (16 bp):
TAATTTTAATAAAAAT
Found at i:11893530 original size:59 final size:66
Alignment explanation
Indices: 11893399--11893519 Score: 166
Period size: 66 Copynumber: 1.9 Consensus size: 66
11893389 TACAATTAAT
*
11893399 ACAATT-A-ACAATTAATACAATTAATAATTTGATAATTTTACTAATCAAATGTTAGATTTTGTT
1 ACAATTAATACAATTAATACAATTAATAATTTGATAATTTTACTAA-CAAA-GTTAGATTTTGTA
11893462 ACA
64 ACA
11893465 ACAATTAATACAATT-A-ACAATTAATAATTTGATAATTTTACTAA-AAA-TTA-ATTTT
1 ACAATTAATACAATTAATACAATTAATAATTTGATAATTTTACTAACAAAGTTAGATTTT
11893520 AATAATAATT
Statistics
Matches: 53, Mismatches: 0, Indels: 9
0.85 0.00 0.15
Matches are distributed among these distances:
61 5 0.09
62 3 0.06
64 3 0.06
66 34 0.64
67 2 0.04
68 6 0.11
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.41
Consensus pattern (66 bp):
ACAATTAATACAATTAATACAATTAATAATTTGATAATTTTACTAACAAAGTTAGATTTTGTAAC
A
Found at i:11894937 original size:31 final size:31
Alignment explanation
Indices: 11894898--11894966 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 31
11894888 AAAAATTATA
*
11894898 ATTT-AGTCATTAAACTATTCAAAAGTTTTC
1 ATTTAAGTCACTAAACTATTCAAAAGTTTTC
* *
11894928 ATTTAAGTCACTAAACTATTCAAAATTTTTT
1 ATTTAAGTCACTAAACTATTCAAAAGTTTTC
11894959 ATTTAAGT
1 ATTTAAGT
11894967 TACTGGGTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
30 4 0.11
31 31 0.89
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.45
Consensus pattern (31 bp):
ATTTAAGTCACTAAACTATTCAAAAGTTTTC
Found at i:11907133 original size:6 final size:6
Alignment explanation
Indices: 11907122--11907148 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
11907112 GTGTGTCGAA
11907122 TACTGT TACTGT TACTGT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TAC
11907149 CGATTCGGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (6 bp):
TACTGT
Found at i:11907142 original size:51 final size:45
Alignment explanation
Indices: 11907004--11907234 Score: 311
Period size: 45 Copynumber: 5.0 Consensus size: 45
11906994 ATTTGCCGGC
* * * * *
11907004 TTACTGATTAGGCAC-TTATGTGCCGACTACTGTTACTGTTACTG
1 TTACAGATTCGGCACTTTGTGTGTCGAATACTGTTACTGTTACTG
*
11907048 ATTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTGTTACTG
1 -TTACAGATTCGGCACTTTGTGTGTCGAATACTGTTACTGTTACTG
11907094 TTACAGATTCGGCACTTTGTGTGTCGAATACTGTTACTGTTACTG
1 TTACAGATTCGGCACTTTGTGTGTCGAATACTGTTACTGTTACTG
11907139 TTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGTTACTGTTACTG
1 TTAC----A--GATTCGGCACTTTGTGTGTCGAATACTGTTACTGTTACTG
* * *
11907190 TTACAGATTCAGCACTTTGCGTGTTGAATACTGTTACTGTTACTG
1 TTACAGATTCGGCACTTTGTGTGTCGAATACTGTTACTGTTACTG
11907235 CTACCGTTAC
Statistics
Matches: 171, Mismatches: 8, Indels: 14
0.89 0.04 0.07
Matches are distributed among these distances:
45 99 0.58
46 26 0.15
47 1 0.01
49 1 0.01
51 44 0.26
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.40
Consensus pattern (45 bp):
TTACAGATTCGGCACTTTGTGTGTCGAATACTGTTACTGTTACTG
Found at i:11907172 original size:96 final size:96
Alignment explanation
Indices: 11907031--11907249 Score: 375
Period size: 96 Copynumber: 2.3 Consensus size: 96
11907021 ATGTGCCGAC
11907031 TACTGTTACTGTTACTGATTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTGTTACTGTT
1 TACTGTTACTGTTACTG-TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTGTTACTGTT
* *
11907096 ACAGATTCGGCACTTTGTGTGTCGAATACTGT
65 ACAGATTCAGCACTTTGCGTGTCGAATACTGT
*
11907128 TACTGTTACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGTTACTGTTACTGTTA
1 TACTGTTACTGTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTGTTACTGTTA
*
11907193 CAGATTCAGCACTTTGCGTGTTGAATACTGT
66 CAGATTCAGCACTTTGCGTGTCGAATACTGT
* *
11907224 TACTGTTACTGCTACCGTTACTGATT
1 TACTGTTACTGTTACTGTTACTGATT
11907250 ACTGTTTACT
Statistics
Matches: 115, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
96 98 0.85
97 17 0.15
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.41
Consensus pattern (96 bp):
TACTGTTACTGTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTGTTACTGTTA
CAGATTCAGCACTTTGCGTGTCGAATACTGT
Found at i:11907229 original size:6 final size:6
Alignment explanation
Indices: 11907218--11907260 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
11907208 GCGTGTTGAA
* *
11907218 TACTGT TACTGT TACTGC TACCGT TACTGAT TACTGTT TACTG
1 TACTGT TACTGT TACTGT TACTGT TACTG-T TACTG-T TACTG
11907261 GTGTGTTTGG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
6 19 0.61
7 12 0.39
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.44
Consensus pattern (6 bp):
TACTGT
Found at i:11907766 original size:13 final size:15
Alignment explanation
Indices: 11907748--11907779 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
11907738 TATATGAAAT
11907748 AATGATT-TT-ATGA
1 AATGATTATTGATGA
11907761 AATGATTATTGATGA
1 AATGATTATTGATGA
11907776 AATG
1 AATG
11907780 CATGAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 2 0.12
15 8 0.47
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (15 bp):
AATGATTATTGATGA
Found at i:11910314 original size:27 final size:27
Alignment explanation
Indices: 11910275--11910352 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
11910265 TAGTATTGGC
*
11910275 GCCTATCTCAGAGGCGCCAATGGTGGT
1 GCCTATCTGAGAGGCGCCAATGGTGGT
* *
11910302 GCCTATCTGAGAGGCGCCATTAGTGGT
1 GCCTATCTGAGAGGCGCCAATGGTGGT
*
11910329 GCC-ATGTTGAGAGGCGCCAATGGT
1 GCCTAT-CTGAGAGGCGCCAATGGT
11910353 CTAATTTTTC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
26 2 0.05
27 42 0.95
ACGTcount: A:0.19, C:0.23, G:0.35, T:0.23
Consensus pattern (27 bp):
GCCTATCTGAGAGGCGCCAATGGTGGT
Found at i:11911753 original size:6 final size:6
Alignment explanation
Indices: 11911736--11911765 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
11911726 GTAGTTCCGT
*
11911736 CTCTGG CACTGG CTCTGG CTCTGG CTCTGG
1 CTCTGG CTCTGG CTCTGG CTCTGG CTCTGG
11911766 TGCATGATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.03, C:0.33, G:0.33, T:0.30
Consensus pattern (6 bp):
CTCTGG
Found at i:11913802 original size:19 final size:19
Alignment explanation
Indices: 11913778--11913839 Score: 88
Period size: 19 Copynumber: 3.2 Consensus size: 19
11913768 ATTATAAAAT
*
11913778 AATTACAATGTTCATACAA
1 AATTACAATATTCATACAA
11913797 AATTACAATATTCATACAAAA
1 AATTACAATATTCATAC--AA
*
11913818 AATTAGAATATTCATACAA
1 AATTACAATATTCATACAA
11913837 AAT
1 AAT
11913840 ACTAATCCAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
19 21 0.54
21 18 0.46
ACGTcount: A:0.53, C:0.13, G:0.03, T:0.31
Consensus pattern (19 bp):
AATTACAATATTCATACAA
Found at i:11913821 original size:21 final size:21
Alignment explanation
Indices: 11913773--11913838 Score: 91
Period size: 21 Copynumber: 3.2 Consensus size: 21
11913763 ATTTAATTAT
*
11913773 AAAATAATTACAATGTTCATAC
1 AAAA-AATTACAATATTCATAC
11913795 --AAAATTACAATATTCATAC
1 AAAAAATTACAATATTCATAC
*
11913814 AAAAAATTAGAATATTCATAC
1 AAAAAATTACAATATTCATAC
11913835 AAAA
1 AAAA
11913839 TACTAATCCA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
19 16 0.40
20 2 0.05
21 22 0.55
ACGTcount: A:0.56, C:0.12, G:0.03, T:0.29
Consensus pattern (21 bp):
AAAAAATTACAATATTCATAC
Found at i:11914035 original size:14 final size:13
Alignment explanation
Indices: 11914011--11914050 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
11914001 TACATTTTTT
11914011 TTCTTTCTTCTTC
1 TTCTTTCTTCTTC
11914024 TTCTTCTCTTCTTC
1 TTCTT-TCTTCTTC
*
11914038 TCCTTTCTCTCTT
1 TTCTTTCT-TCTT
11914051 TTTTTTTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 8 0.33
14 16 0.67
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (13 bp):
TTCTTTCTTCTTC
Found at i:11914202 original size:27 final size:27
Alignment explanation
Indices: 11914172--11914236 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
11914162 AGAAGGCCAC
11914172 CATTGGCGCCTC-CTTATGAGGCACATT
1 CATTGGCGCCTCTC-TATGAGGCACATT
11914199 CATTGGCGCCTCTCTATGAGGCACATT
1 CATTGGCGCCTCTCTATGAGGCACATT
11914226 CATTGGCGCCT
1 CATTGGCGCCT
11914237 ACCTGATAGG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.17, C:0.31, G:0.23, T:0.29
Consensus pattern (27 bp):
CATTGGCGCCTCTCTATGAGGCACATT
Found at i:11914449 original size:28 final size:25
Alignment explanation
Indices: 11914401--11914468 Score: 77
Period size: 28 Copynumber: 2.6 Consensus size: 25
11914391 GAAAAAAGTA
*
11914401 ACCC-ATTTTGGTAAATATTTTTTT
1 ACCCTATTTTAGTAAATATTTTTTT
11914425 GACATCCTATTTTAGTACAAT-TTTTTTT
1 -AC--CCTATTTTAGTA-AATATTTTTTT
11914453 ACCCTATTTTAGTAAA
1 ACCCTATTTTAGTAAA
11914469 AAACCCTGCA
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
24 2 0.05
25 14 0.37
27 4 0.11
28 15 0.39
29 3 0.08
ACGTcount: A:0.28, C:0.15, G:0.07, T:0.50
Consensus pattern (25 bp):
ACCCTATTTTAGTAAATATTTTTTT
Found at i:11915885 original size:25 final size:25
Alignment explanation
Indices: 11915848--11915924 Score: 75
Period size: 25 Copynumber: 3.1 Consensus size: 25
11915838 CAACTTGCAA
* * *
11915848 GAGCGTCCCGTTATTTAGCTCTTAT
1 GAGCATCCCGTTATATAGCTCTCAT
* *
11915873 GAGCATCCTGTTATATGGCTCTCAT
1 GAGCATCCCGTTATATAGCTCTCAT
* *
11915898 GAGCTTCCCGATAT-TAGGCTCTCAT
1 GAGCATCCCGTTATATA-GCTCTCAT
11915923 GA
1 GA
11915925 CCTTCCCAAT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (25 bp):
GAGCATCCCGTTATATAGCTCTCAT
Found at i:11915941 original size:50 final size:48
Alignment explanation
Indices: 11915887--11916030 Score: 143
Period size: 50 Copynumber: 2.9 Consensus size: 48
11915877 ATCCTGTTAT
*
11915887 ATGGCTCTCATGAGCTTCCCGATATTA-GGCTCTCATGACCTTCCCAATTA
1 ATGGCT-TCATGAGCTTCCCGAT-TTATGGCTCTCATGAGCTTCCCAA-TA
* *
11915937 ATGGCTTTCTTGAGATTCCCG-TTTATGGCTCGT-ATGAGCTTCCCAATA
1 ATGGC-TTCATGAGCTTCCCGATTTATGGCTC-TCATGAGCTTCCCAATA
* *
11915985 ATTGGCTTGCAAGAGCTTCCC-ATTATATGGCTCACATGAGCTTCCC
1 A-TGGCTT-CATGAGCTTCCCGATT-TATGGCTCTCATGAGCTTCCC
11916031 GTTACATGGT
Statistics
Matches: 79, Mismatches: 7, Indels: 16
0.77 0.07 0.16
Matches are distributed among these distances:
48 8 0.10
49 33 0.42
50 37 0.47
51 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (48 bp):
ATGGCTTCATGAGCTTCCCGATTTATGGCTCTCATGAGCTTCCCAATA
Found at i:11916030 original size:74 final size:75
Alignment explanation
Indices: 11915841--11916039 Score: 192
Period size: 74 Copynumber: 2.7 Consensus size: 75
11915831 CACACCACAA
* * * * * * *
11915841 CTTGCAAGAGCGTCCCGTTATTTAGCTCTTATGAGCATCCTGTTATATGGCTCTCATGAGCTTCC
1 CTTGCAAGAGCTTCCCATTATATGGCTCTCATGAGCTTCCCGTTATATGGCTCTCATGAGCTTCC
*
11915906 CGATATTAGG
66 CAATATTAGG
* * * * *
11915916 CTCT-CATGACCTTCCCAATTA-ATGGCTTTCTTGAGATTCCCGTT-TATGGCTCGT-ATGAGCT
1 CT-TGCAAGAGCTTCCC-ATTATATGGCTCTCATGAGCTTCCCGTTATATGGCTC-TCATGAGCT
11915977 TCCCAATAATT-GG
63 TCCCAAT-ATTAGG
* *
11915990 CTTGCAAGAGCTTCCCATTATATGGCTCACATGAGCTTCCCGTTACATGG
1 CTTGCAAGAGCTTCCCATTATATGGCTCTCATGAGCTTCCCGTTATATGG
11916040 TTCAAAAGAG
Statistics
Matches: 97, Mismatches: 20, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
73 5 0.05
74 54 0.56
75 34 0.35
76 4 0.04
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.34
Consensus pattern (75 bp):
CTTGCAAGAGCTTCCCATTATATGGCTCTCATGAGCTTCCCGTTATATGGCTCTCATGAGCTTCC
CAATATTAGG
Done.