Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55868233
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 983842 characters in sequence are not A, C, G, or T
File 49 of 187
Found at i:14698319 original size:20 final size:21
Alignment explanation
Indices: 14698278--14698320 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
14698268 AATTCTTTAA
14698278 TTTATAATATTTTAAAAGGAT
1 TTTATAATATTTTAAAAGGAT
*
14698299 TTTATTATATTTTAAAA-GAT
1 TTTATAATATTTTAAAAGGAT
14698319 TT
1 TT
14698321 AAAACCCAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (21 bp):
TTTATAATATTTTAAAAGGAT
Found at i:14706075 original size:25 final size:25
Alignment explanation
Indices: 14706001--14706075 Score: 96
Period size: 26 Copynumber: 2.9 Consensus size: 25
14705991 ACGGATTTTC
* *
14706001 TCAAAATTTTACCAGGAATAAAATCA
1 TCAAAATTTTACAAGG-GTAAAATCA
*
14706027 TCAAAATTTTATCAAGGGTAAAATCG
1 TCAAAATTTTA-CAAGGGTAAAATCA
*
14706053 TCAAAATTTTACTAGGGTAAAAT
1 TCAAAATTTTACAAGGGTAAAAT
14706076 TGGGTGAGAA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
25 11 0.25
26 29 0.66
27 4 0.09
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (25 bp):
TCAAAATTTTACAAGGGTAAAATCA
Found at i:14706365 original size:173 final size:173
Alignment explanation
Indices: 14706071--14706413 Score: 623
Period size: 173 Copynumber: 2.0 Consensus size: 173
14706061 TTACTAGGGT
* *
14706071 AAAATTGGGTGAGAAAATTATTTAATATGTAGATATTAAAGTTTATTTTGGGAAATAGAAAAACT
1 AAAACTGGGTGAGAAAATTATTTAATATGTAGATATTAAAGTTTATTTTGGAAAATAGAAAAACT
*
14706136 AAATCGGGTTGGATCATATTACAGGTACTCGGTCAAAAAGGTTCAAGAAGTACTCGTAATTAAAC
66 AAATCGGGTTGGATCATATTACAGGTACTCAGTCAAAAAGGTTCAAGAAGTACTCGTAATTAAAC
** *
14706201 CCGATGTGAGAAAGGCCCAAAATTCCTTATATAACATGAAAGG
131 CCGATGTGAGAAAGGCCCAAAACCCCTCATATAACATGAAAGG
14706244 AAAACTGGGTGAGAAAATTATTTAATATGTAGATATTAAAGTTTATTTTGGAAAATAGAAAAACT
1 AAAACTGGGTGAGAAAATTATTTAATATGTAGATATTAAAGTTTATTTTGGAAAATAGAAAAACT
*
14706309 AAATCGGGTTGGATCATATTACAGGTACTCAGTCAAAAAGGTTCAAGAAGTACTCGTAATTGAAC
66 AAATCGGGTTGGATCATATTACAGGTACTCAGTCAAAAAGGTTCAAGAAGTACTCGTAATTAAAC
14706374 CCGATGTGAGAAAGGCCCAAAACCCCTCATATAACATGAA
131 CCGATGTGAGAAAGGCCCAAAACCCCTCATATAACATGAA
14706414 GGGGGCGGCA
Statistics
Matches: 163, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
173 163 1.00
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (173 bp):
AAAACTGGGTGAGAAAATTATTTAATATGTAGATATTAAAGTTTATTTTGGAAAATAGAAAAACT
AAATCGGGTTGGATCATATTACAGGTACTCAGTCAAAAAGGTTCAAGAAGTACTCGTAATTAAAC
CCGATGTGAGAAAGGCCCAAAACCCCTCATATAACATGAAAGG
Found at i:14708483 original size:40 final size:40
Alignment explanation
Indices: 14708427--14708637 Score: 210
Period size: 40 Copynumber: 5.3 Consensus size: 40
14708417 AGATCAACTG
* * *
14708427 AACACACTAGACAAAAGCTCATAAGAGCTTA-CCAAACCGA
1 AACACACCAAACAAAAGCTCATAAGAGCTGATCC-AACCGA
* *
14708467 AACACACCAAATAAAAGCTCATAAGAGCTGATTCAACCGA
1 AACACACCAAACAAAAGCTCATAAGAGCTGATCCAACCGA
*** * **
14708507 AACATGTCAAACAGAAGCTCATAAGAGCTGATCCAATTGA
1 AACACACCAAACAAAAGCTCATAAGAGCTGATCCAACCGA
* * * * *
14708547 AACACACCAGACAGAAGCTTATAAGAGTTGATCCAACTGA
1 AACACACCAAACAAAAGCTCATAAGAGCTGATCCAACCGA
* * *
14708587 AACACACCAGACAGAAA-CTCATAAAAGCTGATCCAACGGA
1 AACACACCAAACA-AAAGCTCATAAGAGCTGATCCAACCGA
*
14708627 AACACGCCAAA
1 AACACACCAAA
14708638 TAAAGAGTAT
Statistics
Matches: 142, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
40 139 0.98
41 3 0.02
ACGTcount: A:0.46, C:0.25, G:0.15, T:0.14
Consensus pattern (40 bp):
AACACACCAAACAAAAGCTCATAAGAGCTGATCCAACCGA
Found at i:14711237 original size:16 final size:16
Alignment explanation
Indices: 14711216--14711274 Score: 50
Period size: 16 Copynumber: 3.7 Consensus size: 16
14711206 TTAATCAATT
14711216 TAATATTAAATTAATA
1 TAATATTAAATTAATA
** *
14711232 TAATATTTATTTTGATA
1 TAATA-TTAAATTAATA
*
14711249 -AATATTACATTAAT-
1 TAATATTAAATTAATA
14711263 TAAATATTAAAT
1 T-AATATTAAAT
14711275 CTTATTAAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
15 7 0.21
16 18 0.55
17 8 0.24
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (16 bp):
TAATATTAAATTAATA
Found at i:14715180 original size:17 final size:17
Alignment explanation
Indices: 14715158--14715190 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14715148 GTCCATTAAT
*
14715158 TAATATACTATCATAAA
1 TAATATACTATAATAAA
14715175 TAATATACTATAATAA
1 TAATATACTATAATAA
14715191 GAAATTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (17 bp):
TAATATACTATAATAAA
Found at i:14716510 original size:3 final size:3
Alignment explanation
Indices: 14716502--14716535 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
14716492 ACATGTAACT
*
14716502 TTC TTC TTC TTC TTC CTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
14716536 CATTTCAGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:14734732 original size:29 final size:28
Alignment explanation
Indices: 14734671--14734732 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 28
14734661 TTTAAATTTC
*
14734671 AAATA-TATTATATATTTTTAATTATTT
1 AAATATTATTATATATTTTTAATTACTT
** *
14734698 GTATATTATATATATATTTTTAATTGCTT
1 AAATATTAT-TATATATTTTTAATTACTT
14734727 AAATAT
1 AAATAT
14734733 GTAAAAAAAC
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
27 3 0.11
28 3 0.11
29 21 0.78
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (28 bp):
AAATATTATTATATATTTTTAATTACTT
Found at i:14737173 original size:64 final size:64
Alignment explanation
Indices: 14737071--14737255 Score: 253
Period size: 64 Copynumber: 2.9 Consensus size: 64
14737061 GCCTATATCG
* * * * *
14737071 GGACGCTAATAAAGAGCTACGGTATGTCCGCAATACATGCAGGATTAATACCGATCATATAACA
1 GGACGCTCACAAAGAGCTACGGTATGTCCGCAACACATGTAGGATAAATACCGATCATATAACA
* * * *
14737135 GGACGCTCACAAAGAGTTGCGGTATGTCCTCAACACATGTAGGATAAATACTGATCATATAACA
1 GGACGCTCACAAAGAGCTACGGTATGTCCGCAACACATGTAGGATAAATACCGATCATATAACA
* * * *
14737199 GGACGTTCACAAAGAGCAACGGTATATCCGCAACACATGTAGGATAAATACCTATCA
1 GGACGCTCACAAAGAGCTACGGTATGTCCGCAACACATGTAGGATAAATACCGATCA
14737256 GGATGCTTGC
Statistics
Matches: 104, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
64 104 1.00
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (64 bp):
GGACGCTCACAAAGAGCTACGGTATGTCCGCAACACATGTAGGATAAATACCGATCATATAACA
Found at i:14737991 original size:20 final size:20
Alignment explanation
Indices: 14737966--14738006 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
14737956 CAGCATACTC
*
14737966 ATCCGTGGCAAAAATTTTAT
1 ATCCGTGGAAAAAATTTTAT
14737986 ATCCGTGGAAAAAATTTTAT
1 ATCCGTGGAAAAAATTTTAT
14738006 A
1 A
14738007 CTTTGATAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (20 bp):
ATCCGTGGAAAAAATTTTAT
Found at i:14742216 original size:3 final size:3
Alignment explanation
Indices: 14742208--14742246 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
14742198 GTTACTTTCT
14742208 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14742247 TGCTTTTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14756525 original size:25 final size:25
Alignment explanation
Indices: 14756492--14756559 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
14756482 CTGTAAACAG
14756492 TAAGCTCCTCCGAGCTGAATAACGA
1 TAAGCTCCTCCGAGCTGAATAACGA
*
14756517 TAAGTTCCTCCGAGCTGAATAACGA
1 TAAGCTCCTCCGAGCTGAATAACGA
* *
14756542 TAAGCTCATACGAGCTGA
1 TAAGCTCCTCCGAGCTGA
14756560 GTATAGGTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (25 bp):
TAAGCTCCTCCGAGCTGAATAACGA
Found at i:14758304 original size:23 final size:23
Alignment explanation
Indices: 14758274--14758325 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
14758264 TACGGTATTT
* *
14758274 CTGTAATATCTCGAAAATTACTA
1 CTGTAATACCCCGAAAATTACTA
14758297 CTGTAATACCCCGAAAATTACTA
1 CTGTAATACCCCGAAAATTACTA
*
14758320 CAGTAA
1 CTGTAA
14758326 GAAATTAGGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (23 bp):
CTGTAATACCCCGAAAATTACTA
Found at i:14762463 original size:16 final size:17
Alignment explanation
Indices: 14762442--14762484 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
14762432 AAATAAATCT
*
14762442 TTAAAAATTTATAA-AA
1 TTAAAAATTTAAAATAA
14762458 TTAAAAATATTAAAATAA
1 TTAAAAAT-TTAAAATAA
14762476 TTAAAAATT
1 TTAAAAATT
14762485 GGTATAACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 8 0.33
17 6 0.25
18 10 0.42
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
TTAAAAATTTAAAATAA
Found at i:14762746 original size:15 final size:16
Alignment explanation
Indices: 14762726--14762762 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
14762716 ATTTGGTTAA
14762726 TTCAAA-ATCTTAATT
1 TTCAAATATCTTAATT
14762741 TTCAAATATCTTAATT
1 TTCAAATATCTTAATT
14762757 TTCAAA
1 TTCAAA
14762763 CAAATAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.41, C:0.14, G:0.00, T:0.46
Consensus pattern (16 bp):
TTCAAATATCTTAATT
Found at i:14762814 original size:21 final size:21
Alignment explanation
Indices: 14762790--14762833 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
14762780 ATAAAATCAT
*
14762790 AAATCATAAATTTCAAAGCTA
1 AAATCATAAAATTCAAAGCTA
** *
14762811 AAATTTTAAAATTCAAATCTA
1 AAATCATAAAATTCAAAGCTA
14762832 AA
1 AA
14762834 TTCTAATTCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.55, C:0.11, G:0.02, T:0.32
Consensus pattern (21 bp):
AAATCATAAAATTCAAAGCTA
Found at i:14767149 original size:5 final size:5
Alignment explanation
Indices: 14767139--14767172 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
14767129 AAATAAATGA
14767139 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
14767173 AACTACTAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:14769400 original size:34 final size:35
Alignment explanation
Indices: 14769356--14769422 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
14769346 CAGTAAAATG
14769356 TTTTCCGTAAAATGATTT-CTGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
14769390 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
14769423 TTGGTGTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:14771515 original size:31 final size:32
Alignment explanation
Indices: 14771458--14771519 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
14771448 TAGAGTTTTA
14771458 TTTTTTTTAAATTTAGATTATGATATTTAAAC
1 TTTTTTTTAAATTTAGATTATGATATTTAAAC
14771490 TTTTTTATTAAATTTTA-A-TAT-ATATTTAAA
1 TTTTTT-TTAAA-TTTAGATTATGATATTTAAA
14771520 ATTATGACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
31 9 0.32
32 9 0.32
33 6 0.21
34 4 0.14
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (32 bp):
TTTTTTTTAAATTTAGATTATGATATTTAAAC
Found at i:14772957 original size:9 final size:9
Alignment explanation
Indices: 14772940--14772970 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
14772930 TCGAGTTGAT
14772940 TCGAATAAC
1 TCGAATAAC
*
14772949 TCGATTAAC
1 TCGAATAAC
14772958 TCGAATAAC
1 TCGAATAAC
14772967 TCGA
1 TCGA
14772971 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:14773497 original size:22 final size:22
Alignment explanation
Indices: 14773472--14773516 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
14773462 ACGAAGATGG
*
14773472 GATCAAATCATAGCTTGAATTT
1 GATCAAATCATAGCTTAAATTT
* * *
14773494 GATCACATTATTGCTTAAATTT
1 GATCAAATCATAGCTTAAATTT
14773516 G
1 G
14773517 GCTAGAAAGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (22 bp):
GATCAAATCATAGCTTAAATTT
Found at i:14774864 original size:4 final size:4
Alignment explanation
Indices: 14774857--14774966 Score: 220
Period size: 4 Copynumber: 27.5 Consensus size: 4
14774847 ATATATATAC
14774857 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
14774905 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
14774953 ACAT ACAT ACAT AC
1 ACAT ACAT ACAT AC
14774967 TTGTCTCATG
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 106 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ACAT
Found at i:14783877 original size:16 final size:16
Alignment explanation
Indices: 14783858--14783895 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
14783848 GTTATATAAC
* *
14783858 ATATTTAATATAAGTA
1 ATATTTAAAATAAATA
14783874 ATATTTAAAATAAATA
1 ATATTTAAAATAAATA
14783890 ATATTT
1 ATATTT
14783896 TATAAAAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (16 bp):
ATATTTAAAATAAATA
Found at i:14788670 original size:21 final size:21
Alignment explanation
Indices: 14788617--14788808 Score: 84
Period size: 21 Copynumber: 9.2 Consensus size: 21
14788607 GTGCTAAATA
* * *
14788617 GAAACCCATAAGGGTTGAA-G
1 GAAACTCATAAGAGTTAAACG
* * *
14788637 GAAAGCTCGTAAGAGCTGAACG
1 GAAA-CTCATAAGAGTTAAACG
* * **
14788659 GAAACCCATAAGGGTTAAATT
1 GAAACTCATAAGAGTTAAACG
* * * *
14788680 GAAGCTCAAAAGAGCTGAACG
1 GAAACTCATAAGAGTTAAACG
* * * *
14788701 AAAACCCATAAGGGTTAAACT
1 GAAACTCATAAGAGTTAAACG
* * *
14788722 GAAGCTCAAAAGAGCTT-AATG
1 GAAACTCATAAGAG-TTAAACG
* * *
14788743 GAAACCCATAAGGGTTAAACT
1 GAAACTCATAAGAGTTAAACG
* * *
14788764 GAAACTCATATGAGTT-GACT
1 GAAACTCATAAGAGTTAAACG
* *
14788784 GAAACTCATGAGAGCTAAACG
1 GAAACTCATAAGAGTTAAACG
14788805 GAAA
1 GAAA
14788809 GCAAACACAG
Statistics
Matches: 118, Mismatches: 49, Indels: 9
0.67 0.28 0.05
Matches are distributed among these distances:
20 22 0.19
21 89 0.75
22 7 0.06
ACGTcount: A:0.42, C:0.17, G:0.23, T:0.18
Consensus pattern (21 bp):
GAAACTCATAAGAGTTAAACG
Found at i:14788685 original size:42 final size:42
Alignment explanation
Indices: 14788617--14788771 Score: 213
Period size: 42 Copynumber: 3.7 Consensus size: 42
14788607 GTGCTAAATA
* * **
14788617 GAAACCCATAAGGGTTGAA-GGAAAGCTCGTAAGAGCTGAACG
1 GAAACCCATAAGGGTTAAACTG-AAGCTCAAAAGAGCTGAACG
*
14788659 GAAACCCATAAGGGTTAAATTGAAGCTCAAAAGAGCTGAACG
1 GAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAGCTGAACG
* * *
14788701 AAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAGCTTAATG
1 GAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAGCTGAACG
*
14788743 GAAACCCATAAGGGTTAAACTGAAACTCA
1 GAAACCCATAAGGGTTAAACTGAAGCTCA
14788772 TATGAGTTGA
Statistics
Matches: 102, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
42 101 0.99
43 1 0.01
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.17
Consensus pattern (42 bp):
GAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAGCTGAACG
Found at i:14792365 original size:5 final size:5
Alignment explanation
Indices: 14792352--14792383 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
14792342 TCAGGATTAT
*
14792352 TTTTG TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT
14792384 CTTTTCAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:14793544 original size:17 final size:18
Alignment explanation
Indices: 14793522--14793556 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
14793512 ATTTCAGTCA
14793522 TGTGGG-CCACACGGGCG
1 TGTGGGCCCACACGGGCG
14793539 TGTGGGCCCACACGGGCG
1 TGTGGGCCCACACGGGCG
14793557 AACATCATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.11, C:0.31, G:0.46, T:0.11
Consensus pattern (18 bp):
TGTGGGCCCACACGGGCG
Found at i:14795701 original size:42 final size:42
Alignment explanation
Indices: 14795528--14795795 Score: 307
Period size: 41 Copynumber: 6.5 Consensus size: 42
14795518 TTTAAACAGA
* * * *
14795528 TTCACTGGCACTT-AGCCTGCTAGACTTAAAGCCTGAT-TCAG-
1 TTCACCGGCA-TTAAGCCTGCTAGACGTAAAGTCTGATAT-TGT
* * * *
14795569 TACACCGGCACTT-AGCCTGCTAGACATATAGTCTGA-AATGT
1 TTCACCGGCA-TTAAGCCTGCTAGACGTAAAGTCTGATATTGT
* * *
14795610 TTCACCGGCACTT-AGCCTGCTAGACATATAGTCTGA-AATGT
1 TTCACCGGCA-TTAAGCCTGCTAGACGTAAAGTCTGATATTGT
* *
14795651 TTCACCGGCATTAAGCCTGCTAGTCGTAAAGCCTGATATTGT
1 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGT
* *
14795693 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATTAT
1 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGT
*
14795735 TTCACCGGCATTAAGTCTGCTAGACGTAAAGTCTGATATTGT
1 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGT
14795777 TTCACCGGCATTAAGCCTG
1 TTCACCGGCATTAAGCCTG
14795796 ATAGGCACTA
Statistics
Matches: 202, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
40 3 0.01
41 100 0.50
42 99 0.49
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (42 bp):
TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGT
Found at i:14803140 original size:42 final size:42
Alignment explanation
Indices: 14803043--14803226 Score: 257
Period size: 42 Copynumber: 4.4 Consensus size: 42
14803033 TGATTCAGTA
* *
14803043 CACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATT-TTT
1 CACCGGCA-TTAAGCCTGCTAGACGTAAAGTCTGAAATTGTTT
*
14803084 CATCGGCATTAAGCCTGCTAGACGTAAAGTCT-AATATTGTTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAA-ATTGTTT
*
14803126 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATTATTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATTGTTT
* * *
14803168 CACTGGCATTAAGTCTGCTAGACGTAAAGTCTGATATTGTTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATTGTTT
*
14803210 CACTGGCATTAAGCCTG
1 CACCGGCATTAAGCCTG
14803227 ATAGGCACTG
Statistics
Matches: 129, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
40 4 0.03
41 29 0.22
42 94 0.73
43 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (42 bp):
CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATTGTTT
Found at i:14803157 original size:83 final size:84
Alignment explanation
Indices: 14803000--14803226 Score: 286
Period size: 84 Copynumber: 2.7 Consensus size: 84
14802990 TTTAAACAGA
* * * * *
14803000 TTCACTGGCACTT-AGCCTGCTAGACTTAAAGCCTGAT-TCAG-TACACCGGCACTT-AGCCTGC
1 TTCACTGGCA-TTAAGCCTGCTAGACGTAAAGTCTAATAT-TGTTTCACCGGCA-TTAAGCCTGC
*
14803061 TAGACATATAGTCTGAAATT-T
63 TAGACATAAAGTCTGAAATTAT
14803082 TTCA-TCGGCATTAAGCCTGCTAGACGTAAAGTCTAATATTGTTTCACCGGCATTAAGCCTGCTA
1 TTCACT-GGCATTAAGCCTGCTAGACGTAAAGTCTAATATTGTTTCACCGGCATTAAGCCTGCTA
*
14803146 GACGTAAAGTCTGAAATTAT
65 GACATAAAGTCTGAAATTAT
* * *
14803166 TTCACTGGCATTAAGTCTGCTAGACGTAAAGTCTGATATTGTTTCACTGGCATTAAGCCTG
1 TTCACTGGCATTAAGCCTGCTAGACGTAAAGTCTAATATTGTTTCACCGGCATTAAGCCTG
14803227 ATAGGCACTG
Statistics
Matches: 128, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
81 3 0.02
82 32 0.25
83 35 0.27
84 57 0.45
85 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (84 bp):
TTCACTGGCATTAAGCCTGCTAGACGTAAAGTCTAATATTGTTTCACCGGCATTAAGCCTGCTAG
ACATAAAGTCTGAAATTAT
Found at i:14803403 original size:2 final size:2
Alignment explanation
Indices: 14803396--14803426 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
14803386 ACATCCGAAC
*
14803396 AT AT AT AT AT AT AT AT AT AT AT AT CT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14803427 ACTTAATACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14805271 original size:18 final size:18
Alignment explanation
Indices: 14805230--14805274 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
14805220 AATAAAAAAA
14805230 GTTTTGAAATTGAATAAC
1 GTTTTGAAATTGAATAAC
* *
14805248 GATTTGTAAA-TGAATAAT
1 GTTTTG-AAATTGAATAAC
14805266 GTTTTGAAA
1 GTTTTGAAA
14805275 ACGAACGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 3 0.13
18 17 0.74
19 3 0.13
ACGTcount: A:0.40, C:0.02, G:0.18, T:0.40
Consensus pattern (18 bp):
GTTTTGAAATTGAATAAC
Found at i:14811367 original size:18 final size:19
Alignment explanation
Indices: 14811346--14811381 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14811336 CTATTTTTCT
14811346 GAATTTT-CATAATATTTA
1 GAATTTTACATAATATTTA
*
14811364 GAATTTTATATAATATTT
1 GAATTTTACATAATATTT
14811382 TTATTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.53
Consensus pattern (19 bp):
GAATTTTACATAATATTTA
Found at i:14825477 original size:32 final size:32
Alignment explanation
Indices: 14825408--14825482 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
14825398 AAAAAGTGAC
*
14825408 TTGTCATTTAACCAGCCACGTTGGAGTCCTTA
1 TTGTCATTTAACCAGCCACGTTGGAGGCCTTA
* * * ** *
14825440 CTGTCATTTAATCGGCCACGTTGGAGGGTTTG
1 TTGTCATTTAACCAGCCACGTTGGAGGCCTTA
14825472 TTGTCATTTAA
1 TTGTCATTTAA
14825483 ACAATAGTAG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (32 bp):
TTGTCATTTAACCAGCCACGTTGGAGGCCTTA
Found at i:14826217 original size:3 final size:3
Alignment explanation
Indices: 14826205--14826237 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
14826195 GCATCTCCAT
14826205 TTC TTC -TC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
14826238 CCTCTTCCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:14842676 original size:19 final size:20
Alignment explanation
Indices: 14842652--14842697 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
14842642 TTTGGACAAT
* *
14842652 TTATAAAAATTTTTTAT-TA
1 TTATAAAAATTGTATATATA
*
14842671 TTATAAAAGTTGTATATATA
1 TTATAAAAATTGTATATATA
14842691 TTATAAA
1 TTATAAA
14842698 TTATATATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (20 bp):
TTATAAAAATTGTATATATA
Found at i:14842706 original size:18 final size:20
Alignment explanation
Indices: 14842669--14842712 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
14842659 AATTTTTTAT
*
14842669 TATTATAAAAGTTGTATATA
1 TATTATAAAAGTTATATATA
14842689 TATTAT-AAA-TTATATATA
1 TATTATAAAAGTTATATATA
*
14842707 TTTTAT
1 TATTAT
14842713 TTAATTTACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 13 0.59
19 3 0.14
20 6 0.27
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (20 bp):
TATTATAAAAGTTATATATA
Found at i:14849311 original size:31 final size:31
Alignment explanation
Indices: 14849276--14849337 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
14849266 AAATTGAAAC
14849276 CAAAATGAAAATAATAACACAATTGTCCCCA
1 CAAAATGAAAATAATAACACAATTGTCCCCA
14849307 CAAAATGAAAATAATAACACAATTGTCCCCA
1 CAAAATGAAAATAATAACACAATTGTCCCCA
14849338 TAAGAAGAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.52, C:0.23, G:0.06, T:0.19
Consensus pattern (31 bp):
CAAAATGAAAATAATAACACAATTGTCCCCA
Found at i:14849606 original size:10 final size:10
Alignment explanation
Indices: 14849588--14849620 Score: 52
Period size: 9 Copynumber: 3.5 Consensus size: 10
14849578 AAACTAACGT
14849588 GTGGGAAAAA
1 GTGGGAAAAA
14849598 GT-GGAAAAA
1 GTGGGAAAAA
14849607 GTGGGAAAAA
1 GTGGGAAAAA
14849617 -TGGG
1 GTGGG
14849621 GAAAGTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.45, C:0.00, G:0.42, T:0.12
Consensus pattern (10 bp):
GTGGGAAAAA
Found at i:14851247 original size:34 final size:34
Alignment explanation
Indices: 14851204--14851384 Score: 263
Period size: 34 Copynumber: 5.3 Consensus size: 34
14851194 GTAAACCCCA
* *
14851204 TATGACATAGCATGCGAACCCTCATGTTATGTAG
1 TATGACATAGTATGCGAACCCTCATGTTATATAG
** *
14851238 TATGACATAGTATGTAAACCTTCATGTTATATAG
1 TATGACATAGTATGCGAACCCTCATGTTATATAG
*
14851272 TATGACATAGTATGCGAACCCTCACGTTATATAG
1 TATGACATAGTATGCGAACCCTCATGTTATATAG
* *
14851306 TAAGACATAGTATGCGAACCCTTATGTTATATAG
1 TATGACATAGTATGCGAACCCTCATGTTATATAG
* * *
14851340 TAAGACATAGTATGTGAACCCTCATGTTATATGG
1 TATGACATAGTATGCGAACCCTCATGTTATATAG
14851374 TATGACATAGT
1 TATGACATAGT
14851385 GAACTGTTAG
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 131 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (34 bp):
TATGACATAGTATGCGAACCCTCATGTTATATAG
Found at i:14851566 original size:15 final size:15
Alignment explanation
Indices: 14851542--14851589 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
14851532 GTGAATTAGC
* *
14851542 ATGTGTGAACCTTAT
1 ATGTGCGAACCCTAT
14851557 ATGTGCGAACCCTAT
1 ATGTGCGAACCCTAT
** *
14851572 ACATGCGAACCCTGT
1 ATGTGCGAACCCTAT
14851587 ATG
1 ATG
14851590 CAATCCCTTG
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (15 bp):
ATGTGCGAACCCTAT
Found at i:14858434 original size:3 final size:3
Alignment explanation
Indices: 14858428--14858479 Score: 61
Period size: 3 Copynumber: 17.3 Consensus size: 3
14858418 AGAAATAGTA
* *
14858428 GAT GAT GAT GAT GAT GAT GAT GGT GAT GAT GAT GGA- GAT GAA GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT -GAT GAT GAT GAT
*
14858473 GAA GAT G
1 GAT GAT G
14858480 GCTTGAGCCA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 2 0.05
3 37 0.90
4 2 0.05
ACGTcount: A:0.35, C:0.00, G:0.38, T:0.27
Consensus pattern (3 bp):
GAT
Found at i:14859983 original size:22 final size:22
Alignment explanation
Indices: 14859916--14859986 Score: 70
Period size: 24 Copynumber: 3.0 Consensus size: 22
14859906 AAAACAATTC
14859916 ATATATAATATATATAATTTTAAA
1 ATATATAAT-TATA-AATTTTAAA
* ** *
14859940 AAATATTTTTTATAAAACTTTAAA
1 ATATA-TAATTAT-AAATTTTAAA
14859964 ATATATAATTATAAATTTTAAA
1 ATATATAATTATAAATTTTAAA
14859986 A
1 A
14859987 AGTTAAAATA
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
22 10 0.27
23 5 0.14
24 19 0.51
25 3 0.08
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (22 bp):
ATATATAATTATAAATTTTAAA
Found at i:14860016 original size:29 final size:28
Alignment explanation
Indices: 14859948--14860028 Score: 71
Period size: 29 Copynumber: 2.8 Consensus size: 28
14859938 AAAAATATTT
*
14859948 TTTATAAAACTTTAAAAT-ATATAATTATAAA
1 TTTATAAAA--TTAAAATAATAT-A-TAAAAA
14859979 TTT-TAAAAAGTTAAAATAATATATAAAAA
1 TTTAT-AAAA-TTAAAATAATATATAAAAA
14860008 TTTATAAAA-TAAAA-AATATAT
1 TTTATAAAATTAAAATAATATAT
14860029 TTAAATTACT
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
26 7 0.16
27 5 0.11
29 12 0.27
30 10 0.22
31 11 0.24
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (28 bp):
TTTATAAAATTAAAATAATATATAAAAA
Found at i:14860016 original size:30 final size:31
Alignment explanation
Indices: 14859948--14860016 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
14859938 AAAAATATTT
** *
14859948 TTTATAAAACTTTAAAATATATAATTATAAA
1 TTTATAAAAAGTTAAAATATATAATTAAAAA
14859979 TTT-TAAAAAGTTAAAATA-AT-ATATAAAAA
1 TTTATAAAAAGTTAAAATATATAAT-TAAAAA
14860008 TTTATAAAA
1 TTTATAAAA
14860017 TAAAAAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
28 2 0.06
29 10 0.30
30 18 0.55
31 3 0.09
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (31 bp):
TTTATAAAAAGTTAAAATATATAATTAAAAA
Found at i:14860087 original size:11 final size:11
Alignment explanation
Indices: 14860071--14860104 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
14860061 TTTTTATAAG
14860071 TTTTACAATTT
1 TTTTACAATTT
*
14860082 TTTTACATTTT
1 TTTTACAATTT
14860093 TTTTAC-ATTT
1 TTTTACAATTT
14860103 TT
1 TT
14860105 AATAATATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 5 0.24
11 16 0.76
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTTACAATTT
Found at i:14861458 original size:18 final size:17
Alignment explanation
Indices: 14861429--14861482 Score: 72
Period size: 17 Copynumber: 3.1 Consensus size: 17
14861419 AGTTTTATTC
* *
14861429 TAAAAATCCAAAAATAT
1 TAAAAATTCAAAAAAAT
14861446 TAAAAATTACAAAAAAAT
1 TAAAAATT-CAAAAAAAT
*
14861464 AAAAAATTCAAAAAAAT
1 TAAAAATTCAAAAAAAT
14861481 TA
1 TA
14861483 TAATATATTC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 17 0.53
18 15 0.47
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.22
Consensus pattern (17 bp):
TAAAAATTCAAAAAAAT
Found at i:14861485 original size:20 final size:19
Alignment explanation
Indices: 14861438--14861495 Score: 57
Period size: 18 Copynumber: 3.1 Consensus size: 19
14861428 CTAAAAATCC
*
14861438 AAAAATATTAAAAATT-ACA
1 AAAAATATAAAAAATTCA-A
14861457 AAAAA-ATAAAAAATTCAA
1 AAAAATATAAAAAATTCAA
* *
14861475 AAAAATTATAATATATTCAA
1 AAAAA-TATAAAAAATTCAA
14861495 A
1 A
14861496 TTATTATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
18 15 0.45
19 6 0.18
20 12 0.36
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (19 bp):
AAAAATATAAAAAATTCAA
Found at i:14864424 original size:18 final size:18
Alignment explanation
Indices: 14864401--14864442 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
14864391 TATATTAATC
*
14864401 TGTTATGAGCATATTAAA
1 TGTTATAAGCATATTAAA
14864419 TGTTATAAGCATATTAAA
1 TGTTATAAGCATATTAAA
14864437 TGTTAT
1 TGTTAT
14864443 TGTATTGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.38, C:0.05, G:0.14, T:0.43
Consensus pattern (18 bp):
TGTTATAAGCATATTAAA
Found at i:14864681 original size:44 final size:45
Alignment explanation
Indices: 14864587--14864681 Score: 106
Period size: 44 Copynumber: 2.1 Consensus size: 45
14864577 GCTATGCATA
*
14864587 CACAACTAGAGGCAAATTTCATCTGCAAGATTTTTGCTGTGTATC
1 CACAGCTAGAGGCAAATTTCATCTGCAAGATTTTTGCTGTGTATC
* * * *
14864632 TACAGCTAGAGGCAGA-TTCTATCTG-AAGGA-TTTTGTTGTGTGTC
1 CACAGCTAGAGGCAAATTTC-ATCTGCAA-GATTTTTGCTGTGTATC
14864676 CACAGC
1 CACAGC
14864682 CACTGGCAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
44 22 0.52
45 20 0.48
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (45 bp):
CACAGCTAGAGGCAAATTTCATCTGCAAGATTTTTGCTGTGTATC
Found at i:14867861 original size:26 final size:26
Alignment explanation
Indices: 14867825--14867995 Score: 177
Period size: 26 Copynumber: 6.5 Consensus size: 26
14867815 CACGGTGTTG
14867825 ATCGAAATACCCTCGATGGGTAAATT
1 ATCGAAATACCCTCGATGGGTAAATT
14867851 ATCGAAATACCCTCGATGGGTAAATT
1 ATCGAAATACCCTCGATGGGTAAATT
* * *
14867877 ACCAAAATACCTTCGATGGGTAAATT
1 ATCGAAATACCCTCGATGGGTAAATT
* *
14867903 ACCAAAATATCCC-CGATGGGTAAATT
1 ATCGAAATA-CCCTCGATGGGTAAATT
*
14867929 ATCGAAATACCCCCG-TAGGGTAAAATT
1 ATCGAAATACCCTCGAT-GGGT-AAATT
* * *
14867956 A-CTGAAATACCCCTAGAAGGGTAGATT
1 ATC-GAAATA-CCCTCGATGGGTAAATT
*
14867983 GATCGATATACCC
1 -ATCGAAATACCC
14867996 CTAGTAGATG
Statistics
Matches: 125, Mismatches: 11, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
25 4 0.03
26 85 0.68
27 21 0.17
28 14 0.11
29 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (26 bp):
ATCGAAATACCCTCGATGGGTAAATT
Found at i:14868743 original size:23 final size:24
Alignment explanation
Indices: 14868716--14868762 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
14868706 GTACAAATAA
*
14868716 TTTTTCAATACAAACAC-TATTTT
1 TTTTTCAAGACAAACACATATTTT
14868739 TTTTTCAAGACAAACACATATTTT
1 TTTTTCAAGACAAACACATATTTT
14868763 CAACTTCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.36, C:0.17, G:0.02, T:0.45
Consensus pattern (24 bp):
TTTTTCAAGACAAACACATATTTT
Found at i:14875420 original size:25 final size:25
Alignment explanation
Indices: 14875352--14875438 Score: 79
Period size: 26 Copynumber: 3.3 Consensus size: 25
14875342 CGGTGGTGAC
*
14875352 CGAAATACCCTCGATGGGTAAATTA
1 CGAAATACCCTCGATAGGTAAATTA
*
14875377 CTAAAATACCC-CTGATAGGTAAATTA
1 C-GAAATACCCTC-GATAGGTAAATTA
*
14875403 TCGAAATACCCTCG-TAGGGAAAAATTA
1 -CGAAATACCCTCGATA-GG-TAAATTA
14875430 CTGAAATAC
1 C-GAAATAC
14875439 TCCTAGAAGG
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
25 4 0.08
26 32 0.63
27 15 0.29
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (25 bp):
CGAAATACCCTCGATAGGTAAATTA
Found at i:14875647 original size:27 final size:27
Alignment explanation
Indices: 14875598--14875656 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
14875588 TGGAGGAAGC
* * *
14875598 ACTGTTTCTGGTGGCTCTACCACA-ATT
1 ACTGTTACTGATGGCTATACCACATA-T
*
14875625 ACTGTTACTGATGGCTATGCCACATAT
1 ACTGTTACTGATGGCTATACCACATAT
14875652 ACTGT
1 ACTGT
14875657 ATTGGCAGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (27 bp):
ACTGTTACTGATGGCTATACCACATAT
Found at i:14876153 original size:394 final size:394
Alignment explanation
Indices: 14875425--14876212 Score: 1452
Period size: 394 Copynumber: 2.0 Consensus size: 394
14875415 CGTAGGGAAA
14875425 AATTACTGAAATACTCCTAGAAGGGTAGATTGACCGATATACCCCTAGTAGATGAAATGATTGAT
1 AATTACTGAAATACTCCTAGAAGGGTAGATTGACCGATATACCCCTAGTAGATGAAATGATTGAT
14875490 ATGACTTTATGATATTTATTTAACTGATACTGAGTATGACATATTACATGTACGTATAATTCATG
66 ATGACTTTATGATATTTATTTAACTGATACTGAGTATGACATATTACATGTACGTATAATTCATG
14875555 ACATGATATACTGTATGAGTTGGGTTTCTATTATGGAGGAAGCACTGTTTCTGGTGGCTCTACCA
131 ACATGATATACTGTATGAGTTGGGTTTCTATTATGGAGGAAGCACTGTTTCTGGTGGCTCTACCA
14875620 CAATTACTGTTACTGATGGCTATGCCACATATACTGTATTGGCAGCTCGGCTGCATTTTTATTGC
196 CAATTACTGTTACTGATGGCTATGCCACATATACTGTATTGGCAGCTCGGCTGCATTTTTATTGC
*
14875685 TGGCAGCTCTGCTGCAATATTGGTGTGTGGGCTGACTGGGTCGACTTTGTCCTCACATGGTGTGT
261 TGGCAGCTATGCTGCAATATTGGTGTGTGGGCTGACTGGGTCGACTTTGTCCTCACATGGTGTGT
* * *
14875750 AGGGTTGGTATGGGTGGTGTGTTGGGCTGGATTGGGGTGAGTTTTGCATATTTGCACCATACTAA
326 AGGGTTGGTACGGGTGGTGTGTTAGGCTGGATTGGGGTGAGTTTTGCATATTTGAACCATACTAA
14875815 TACT
391 TACT
14875819 AATTACTGAAATACTCCTAGAAGGGTAGATTGACCGATATACCCCTAGTAGATGAAATGATTGAT
1 AATTACTGAAATACTCCTAGAAGGGTAGATTGACCGATATACCCCTAGTAGATGAAATGATTGAT
* *
14875884 ATGGCTTTATGATATTTATTTAACTGATACTGAGTATGACATATTACATGTATGTATAATTCATG
66 ATGACTTTATGATATTTATTTAACTGATACTGAGTATGACATATTACATGTACGTATAATTCATG
* *
14875949 ACATGATATACTGTATGAGTTGGGTTTCTGTTATGGAGGAAGCACTGTTTTTGGTGGCTCTACCA
131 ACATGATATACTGTATGAGTTGGGTTTCTATTATGGAGGAAGCACTGTTTCTGGTGGCTCTACCA
* * *
14876014 CAATTACTGTTACTGGTGGCTATGCCACATATACTGTATTGGCAGCTCGGCTGCGTTTTTATTGT
196 CAATTACTGTTACTGATGGCTATGCCACATATACTGTATTGGCAGCTCGGCTGCATTTTTATTGC
14876079 TGGCAGCTATGCTGCAATATTGGTGTGTGGGCTGACTGGGGT-GACTTTGTCCTCACATGGTGTG
261 TGGCAGCTATGCTGCAATATTGGTGTGTGGGCTGACT-GGGTCGACTTTGTCCTCACATGGTGTG
*
14876143 TAGGGTTGGTACGGGTGGTGTGTTAGGCTGGATTGGGGTGGGTTTTGCATATTTGAACCATACTA
325 TAGGGTTGGTACGGGTGGTGTGTTAGGCTGGATTGGGGTGAGTTTTGCATATTTGAACCATACTA
14876208 ATACT
390 ATACT
14876213 GTAATGGGCT
Statistics
Matches: 381, Mismatches: 12, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
394 377 0.99
395 4 0.01
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.36
Consensus pattern (394 bp):
AATTACTGAAATACTCCTAGAAGGGTAGATTGACCGATATACCCCTAGTAGATGAAATGATTGAT
ATGACTTTATGATATTTATTTAACTGATACTGAGTATGACATATTACATGTACGTATAATTCATG
ACATGATATACTGTATGAGTTGGGTTTCTATTATGGAGGAAGCACTGTTTCTGGTGGCTCTACCA
CAATTACTGTTACTGATGGCTATGCCACATATACTGTATTGGCAGCTCGGCTGCATTTTTATTGC
TGGCAGCTATGCTGCAATATTGGTGTGTGGGCTGACTGGGTCGACTTTGTCCTCACATGGTGTGT
AGGGTTGGTACGGGTGGTGTGTTAGGCTGGATTGGGGTGAGTTTTGCATATTTGAACCATACTAA
TACT
Found at i:14876277 original size:28 final size:28
Alignment explanation
Indices: 14876218--14876278 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
14876208 ATACTGTAAT
* * * **
14876218 GGGCTTAGGCCCACACTGTTAATATATT
1 GGGCTAAGGCCCACACTGATAATAGAAA
*
14876246 GGGCTAAGGCCCACACTGATACTAGAAA
1 GGGCTAAGGCCCACACTGATAATAGAAA
14876274 GGGCT
1 GGGCT
14876279 CGAGCCCAGT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (28 bp):
GGGCTAAGGCCCACACTGATAATAGAAA
Found at i:14878532 original size:21 final size:21
Alignment explanation
Indices: 14878508--14878554 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
14878498 CTTAAAGCAG
**
14878508 AGGCAGCAGTAAGGGAAACAA
1 AGGCAGCAACAAGGGAAACAA
* *
14878529 AGGCAGCAACAAGGGCAGCAA
1 AGGCAGCAACAAGGGAAACAA
14878550 AGGCA
1 AGGCA
14878555 ACAAGAAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.45, C:0.19, G:0.34, T:0.02
Consensus pattern (21 bp):
AGGCAGCAACAAGGGAAACAA
Found at i:14879877 original size:32 final size:32
Alignment explanation
Indices: 14879812--14879870 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
14879802 AATTTTAGAA
*
14879812 ATTTTAATAAATTTTGATTTGTTTTTATATAT
1 ATTTTAATAAATTTTGAATTGTTTTTATATAT
*
14879844 ATTTTTAT-AATTTTGAATT-TTTTTATA
1 ATTTTAATAAATTTTGAATTGTTTTTATA
14879871 AGTATATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 8 0.32
31 10 0.40
32 7 0.28
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (32 bp):
ATTTTAATAAATTTTGAATTGTTTTTATATAT
Found at i:14882927 original size:27 final size:27
Alignment explanation
Indices: 14882897--14882951 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
14882887 ATTTGTGTTA
14882897 ATAAACTATAAGATAAC-AGAGTAATTT
1 ATAAACTATAAGATAACGA-AGTAATTT
*
14882924 ATAAACTATAAGATGACGAAGTAATTT
1 ATAAACTATAAGATAACGAAGTAATTT
14882951 A
1 A
14882952 ATCTTTTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 25 0.96
28 1 0.04
ACGTcount: A:0.51, C:0.07, G:0.13, T:0.29
Consensus pattern (27 bp):
ATAAACTATAAGATAACGAAGTAATTT
Found at i:14892531 original size:32 final size:32
Alignment explanation
Indices: 14892495--14892561 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
14892485 AAATGTCACA
14892495 TTAATATGCAAACATCCTCTTTATTAGCGTTC
1 TTAATATGCAAACATCCTCTTTATTAGCGTTC
14892527 TTAATATGCAAACATCCTCTTTATTAGCGTTC
1 TTAATATGCAAACATCCTCTTTATTAGCGTTC
14892559 TTA
1 TTA
14892562 CAAATTTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (32 bp):
TTAATATGCAAACATCCTCTTTATTAGCGTTC
Found at i:14907768 original size:94 final size:94
Alignment explanation
Indices: 14907656--14907838 Score: 285
Period size: 94 Copynumber: 1.9 Consensus size: 94
14907646 GCTCACTAAT
* * *
14907656 TTACAATTACAGCATAAGTTCATTGATTTACGATCGTGAACAATTTATTCTGAGTTAGTTGATTT
1 TTACAATCACAGCATAAGTTCATTGATTTACGATCATGAACAATTTATTCTGAGTTAATTGATTT
*
14907721 ACGATCGCAACTCCAAATAGCTCGCTGAC
66 ACGATCACAACTCCAAATAGCTCGCTGAC
* * * * *
14907750 TTACAATCGCAGCCTAAGTTCATTGATTTACGATCATGAACCATTTCTTCTGAGTTAATTTATTT
1 TTACAATCACAGCATAAGTTCATTGATTTACGATCATGAACAATTTATTCTGAGTTAATTGATTT
14907815 ACGATCACAACTCCAAATAGCTCG
66 ACGATCACAACTCCAAATAGCTCG
14907839 TTGATTTATG
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
94 80 1.00
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (94 bp):
TTACAATCACAGCATAAGTTCATTGATTTACGATCATGAACAATTTATTCTGAGTTAATTGATTT
ACGATCACAACTCCAAATAGCTCGCTGAC
Found at i:14907938 original size:224 final size:223
Alignment explanation
Indices: 14907531--14908196 Score: 814
Period size: 224 Copynumber: 3.0 Consensus size: 223
14907521 TTGATTTATG
* * * * *
14907531 ATCACAACTTAAGTTCATTGATTTACGATCATGAAAAATTTATTTTAAGTTAGCTAATTTACGAT
1 ATCACAACCTAAGTTCATTGATTTACGATCATGAACAATTTCTTCTGAGTTAGCTAATTTACGAT
* * * * *
14907596 CACAACTCCAAATAACTCACTT-ATTTACGATCACGGTTGATATTAGTAAGGCTCACTAATTTAC
66 CACAACTCCAAATAGCT--CTTGATTTATGATCACGATTGATATTATTAAGGCTCATTAATTTAC
* * * *
14907660 AATTACAGCATAAGTTCATTGATTTACGATCGTGAACAATTTATTCTGAGTTAGTTGATTTACGA
129 AATCACAGCCTAAGTTCATTGATTTACGATCATGAACAATTTCTTCTGAGTTAGTTGATTTACGA
14907725 TCGCAACTCCAAATAGCTCGCTGACTTACA
194 TCGCAACTCCAAATAGCTCGCTGACTTACA
* * * ** *
14907755 ATCGCAGCCTAAGTTCATTGATTTACGATCATGAACCATTTCTTCTGAGTTAATTTATTTACGAT
1 ATCACAACCTAAGTTCATTGATTTACGATCATGAACAATTTCTTCTGAGTTAGCTAATTTACGAT
* * * *
14907820 CACAACTCCAAATAGCTCGTTGATTTATGATCACGACTGATATTATTAAGGCTCGTTGATTTACG
66 CACAACTCCAAATAGCTC-TTGATTTATGATCACGATTGATATTATTAAGGCTCATTAATTTACA
* * * ** **
14907885 ATCACATCCTAAGTTCCTTGATTTACGATTATGAATTATTTCTTCCAAGTTAGTTGATTTACGAT
130 ATCACAGCCTAAGTTCATTGATTTACGATCATGAACAATTTCTTCTGAGTTAGTTGATTTACGAT
* * ** * *
14907950 CACGA-TTGATATTATTAAGGCTCGCTGATTTACG
195 CGCAACTCCA-A--A-T-A-GCTCGCTGACTTACA
*
14907984 ATCACAACCTAAGTTCATTGATTTATGATCATGAACAATTTCTTCTGAGTTAGCTAATTTACGAT
1 ATCACAACCTAAGTTCATTGATTTACGATCATGAACAATTTCTTCTGAGTTAGCTAATTTACGAT
* *
14908049 CGCAACTCCAAACAGCTCTTGATTTATGATCACGATTGATATTATTAAGGCTCATTAATTTACAA
66 CACAACTCCAAATAGCTCTTGATTTATGATCACGATTGATATTATTAAGGCTCATTAATTTACAA
* * * * * *
14908114 TCACAGCCAAAGTTCATTAATTTATGATCATGAACCATTTCTTCTGAGTTAGCTGAATTACGATC
131 TCACAGCCTAAGTTCATTGATTTACGATCATGAACAATTTCTTCTGAGTTAGTTGATTTACGATC
*
14908179 GTAACTCCAAATAGCTCG
196 GCAACTCCAAATAGCTCG
14908197 TTGGTTTACG
Statistics
Matches: 366, Mismatches: 67, Indels: 19
0.81 0.15 0.04
Matches are distributed among these distances:
222 1 0.00
223 9 0.02
224 164 0.45
225 1 0.00
226 2 0.01
227 1 0.00
228 99 0.27
229 89 0.24
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (223 bp):
ATCACAACCTAAGTTCATTGATTTACGATCATGAACAATTTCTTCTGAGTTAGCTAATTTACGAT
CACAACTCCAAATAGCTCTTGATTTATGATCACGATTGATATTATTAAGGCTCATTAATTTACAA
TCACAGCCTAAGTTCATTGATTTACGATCATGAACAATTTCTTCTGAGTTAGTTGATTTACGATC
GCAACTCCAAATAGCTCGCTGACTTACA
Found at i:14907951 original size:99 final size:99
Alignment explanation
Indices: 14907838--14908049 Score: 307
Period size: 99 Copynumber: 2.1 Consensus size: 99
14907828 CAAATAGCTC
* * * *
14907838 GTTGATTTATGATCACGACTGATATTATTAAGGCTCGTTGATTTACGATCACATCCTAAGTTCCT
1 GTTGATTTACGATCACGACTGATATTATTAAGGCTCGCTGATTTACGATCACAACCTAAGTTCAT
* **
14907903 TGATTTACGATTATGAATTATTTCTTCCAAGTTA
66 TGATTTACGATCATGAACAATTTCTTCCAAGTTA
*
14907937 GTTGATTTACGATCACGATTGATATTATTAAGGCTCGCTGATTTACGATCACAACCTAAGTTCAT
1 GTTGATTTACGATCACGACTGATATTATTAAGGCTCGCTGATTTACGATCACAACCTAAGTTCAT
* **
14908002 TGATTTATGATCATGAACAATTTCTTCTGAGTTA
66 TGATTTACGATCATGAACAATTTCTTCCAAGTTA
* *
14908036 GCTAATTTACGATC
1 GTTGATTTACGATC
14908050 GCAACTCCAA
Statistics
Matches: 100, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
99 100 1.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.40
Consensus pattern (99 bp):
GTTGATTTACGATCACGACTGATATTATTAAGGCTCGCTGATTTACGATCACAACCTAAGTTCAT
TGATTTACGATCATGAACAATTTCTTCCAAGTTA
Found at i:14908044 original size:63 final size:63
Alignment explanation
Indices: 14907977--14908178 Score: 169
Period size: 63 Copynumber: 3.2 Consensus size: 63
14907967 AGGCTCGCTG
*
14907977 ATTTACGATCACAACCTAAGTTCATTGATTTATGATCATGAACAATTTCTTCTGAGTTAGCTA
1 ATTTACGATCACAACCAAAGTTCATTGATTTATGATCATGAACAATTTCTTCTGAGTTAGCTA
* * * *** * ** *
14908040 ATTTACGATCGCAACTCCAAACAGCTC-TTGATTTATGATCACGATTGATATTATTAAG-GCTCA
1 ATTTACGATCACAA--CC-AA-AGTTCATTGATTTATGATCATGAACAAT-TTCTTCTGAG-TTA
*
14908103 -TTA
60 GCTA
* * * *
14908106 ATTTACAATCACAGCCAAAGTTCATTAATTTATGATCATGAACCATTTCTTCTGAGTTAGCTGA
1 ATTTACGATCACAACCAAAGTTCATTGATTTATGATCATGAACAATTTCTTCTGAGTTAGCT-A
14908170 A-TTACGATC
1 ATTTACGATC
14908179 GTAACTCCAA
Statistics
Matches: 102, Mismatches: 27, Indels: 20
0.68 0.18 0.13
Matches are distributed among these distances:
62 11 0.11
63 41 0.40
64 4 0.04
65 2 0.02
66 33 0.32
67 11 0.11
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (63 bp):
ATTTACGATCACAACCAAAGTTCATTGATTTATGATCATGAACAATTTCTTCTGAGTTAGCTA
Found at i:14908272 original size:130 final size:130
Alignment explanation
Indices: 14907937--14908425 Score: 648
Period size: 130 Copynumber: 3.8 Consensus size: 130
14907927 TTCCAAGTTA
* * *
14907937 GTTGATTTACGATCACGATTGATATTATTAAGGCTCGCTGATTTACGATCACAACCTAAGTTCAT
1 GTTGATTTACGATCACGATTGATATTATTAAGGCTCACTAATTTACGATCACAGCCTAAGTTCAT
14908002 TGATTTATGATCATGAACAATTTCTTCTGAGTTAGCTAATTTACGATCGCAACTCCAAACAGCTC
66 TGATTTATGATCATGAACAATTTCTTCTGAGTTAGCTAATTTACGATCGCAACTCCAAACAGCTC
* * * *
14908067 -TTGATTTATGATCACGATTGATATTATTAAGGCTCATTAATTTACAATCACAGCCAAAGTTCAT
1 GTTGATTTACGATCACGATTGATATTATTAAGGCTCACTAATTTACGATCACAGCCTAAGTTCAT
* * * *
14908131 TAATTTATGATCATGAACCATTTCTTCTGAGTTAGCTGAA-TTACGATCGTAACTCCAAATAGCT
66 TGATTTATGATCATGAACAATTTCTTCTGAGTTAGCT-AATTTACGATCGCAACTCCAAACAGCT
14908195 C
130 C
* *
14908196 GTTGGTTTACGATCAC-AGTTGATATTATT-AGTGCTCACTGATTTACGATCACAGCCTAAGTTC
1 GTTGATTTACGATCACGA-TTGATATTATTAAG-GCTCACTAATTTACGATCACAGCCTAAGTTC
* * * * * * *
14908259 ATTGATTTATGATCATGAATAATTTCTTATTAGTTAGCTAATTTATGACCGCAACTCTAAACAAC
64 ATTGATTTATGATCATGAACAATTTCTTCTGAGTTAGCTAATTTACGATCGCAACTCCAAACAGC
14908324 TC
129 TC
* * * * *
14908326 GCTT-ATTTATGATCACAACTGATATTATTAAGGCT-AGTTAATTTACGATCATAGCCTAAGTTC
1 G-TTGATTTACGATCACGATTGATATTATTAAGGCTCA-CTAATTTACGATCACAGCCTAAGTTC
* *
14908389 ATTGATTTACGATCATGAACAATTTCTTCTAAGTTAG
64 ATTGATTTATGATCATGAACAATTTCTTCTGAGTTAG
14908426 TTGATTTGTG
Statistics
Matches: 312, Mismatches: 38, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
129 121 0.39
130 186 0.60
131 5 0.02
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (130 bp):
GTTGATTTACGATCACGATTGATATTATTAAGGCTCACTAATTTACGATCACAGCCTAAGTTCAT
TGATTTATGATCATGAACAATTTCTTCTGAGTTAGCTAATTTACGATCGCAACTCCAAACAGCTC
Found at i:14914302 original size:2 final size:2
Alignment explanation
Indices: 14914295--14914321 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14914285 ATGGAATTTA
14914295 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
14914322 GGGAAGATCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14916350 original size:26 final size:28
Alignment explanation
Indices: 14916298--14916351 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
14916288 AACTTTTGCA
*
14916298 AATATAACTATTACATTAGACCAAAAAAT
1 AATATAACTATCACATTAGA-CAAAAAAT
*
14916327 AATATAAGTATCACATTAG-CAAAAA
1 AATATAACTATCACATTAGACAAAAA
14916352 GTGTCAAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 6 0.26
29 17 0.74
ACGTcount: A:0.56, C:0.13, G:0.06, T:0.26
Consensus pattern (28 bp):
AATATAACTATCACATTAGACAAAAAAT
Found at i:14916832 original size:2 final size:2
Alignment explanation
Indices: 14916825--14916850 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14916815 ATTAACTAGT
14916825 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
14916851 AGAAAACCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14917642 original size:14 final size:16
Alignment explanation
Indices: 14917602--14917647 Score: 60
Period size: 15 Copynumber: 2.9 Consensus size: 16
14917592 TTAATAATTT
14917602 ATTAATATTAAATTTTC
1 ATTAATATT-AATTTTC
14917619 ATTAATATT-ATTTTC
1 ATTAATATTAATTTTC
*
14917634 -TTTATATTAATTTT
1 ATTAATATTAATTTT
14917648 AAATTTGGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 7 0.26
15 11 0.41
17 9 0.33
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTAATATTAATTTTC
Found at i:14918866 original size:19 final size:20
Alignment explanation
Indices: 14918833--14918872 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
14918823 TTGCAAAAAG
14918833 AAAATCAAAATAATTT-TAA
1 AAAATCAAAATAATTTATAA
14918852 AAAATTCAAAA-AATTTATAA
1 AAAA-TCAAAATAATTTATAA
14918872 A
1 A
14918873 TTTATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (20 bp):
AAAATCAAAATAATTTATAA
Found at i:14923052 original size:12 final size:12
Alignment explanation
Indices: 14923035--14923073 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
14923025 TTTTGAACCT
*
14923035 CTGCTTCTATTG
1 CTGCTTCTATCG
*
14923047 CTGCTTCTCTCG
1 CTGCTTCTATCG
*
14923059 CTGCTTCTCTCG
1 CTGCTTCTATCG
14923071 CTG
1 CTG
14923074 TAGCCTCTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.03, C:0.36, G:0.18, T:0.44
Consensus pattern (12 bp):
CTGCTTCTATCG
Found at i:14923085 original size:21 final size:21
Alignment explanation
Indices: 14923059--14923106 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
14923049 GCTTCTCTCG
* *
14923059 CTGCTTCTCTCGCTGTAGCCT
1 CTGCTTCCCTCGCTGCAGCCT
*
14923080 CTGCTTCCCTCGCTGCCGCCT
1 CTGCTTCCCTCGCTGCAGCCT
14923101 CTGCTT
1 CTGCTT
14923107 TAAGTTGCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.02, C:0.44, G:0.19, T:0.35
Consensus pattern (21 bp):
CTGCTTCCCTCGCTGCAGCCT
Found at i:14928596 original size:16 final size:17
Alignment explanation
Indices: 14928575--14928673 Score: 73
Period size: 16 Copynumber: 5.9 Consensus size: 17
14928565 GATTTAGGAA
14928575 TAAGTTATGTA-TTATG
1 TAAGTTATGTAGTTATG
*
14928591 TAAGTTATGTAAGTTGTG
1 TAAGTTATGT-AGTTATG
* *
14928609 TAAGTTGTGTAAGTTGTG
1 TAAGTTATGT-AGTTATG
* *
14928627 T-A-TTATGAAACTTATG
1 TAAGTTATG-TAGTTATG
* *
14928643 TACGTTATGT-CTTATG
1 TAAGTTATGTAGTTATG
14928659 TAAGTTATGTA-TTAT
1 TAAGTTATGTAGTTAT
14928674 TATGTAAGTA
Statistics
Matches: 68, Mismatches: 9, Indels: 12
0.76 0.10 0.13
Matches are distributed among these distances:
16 39 0.57
17 2 0.03
18 27 0.40
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.47
Consensus pattern (17 bp):
TAAGTTATGTAGTTATG
Found at i:14928600 original size:9 final size:9
Alignment explanation
Indices: 14928575--14928682 Score: 86
Period size: 9 Copynumber: 12.6 Consensus size: 9
14928565 GATTTAGGAA
14928575 TAAGTTATG
1 TAAGTTATG
14928584 T-A-TTATG
1 TAAGTTATG
14928591 TAAGTTATG
1 TAAGTTATG
*
14928600 TAAGTTGTG
1 TAAGTTATG
*
14928609 TAAGTTGTG
1 TAAGTTATG
*
14928618 TAAGTTGTG
1 TAAGTTATG
14928627 T-A-TTATG
1 TAAGTTATG
* *
14928634 AAACTTATG
1 TAAGTTATG
*
14928643 TACGTTATG
1 TAAGTTATG
*
14928652 T--CTTATG
1 TAAGTTATG
14928659 TAAGTTATG
1 TAAGTTATG
14928668 TATTA-TTATG
1 TA--AGTTATG
14928678 TAAGT
1 TAAGT
14928683 AGGGATGTAG
Statistics
Matches: 82, Mismatches: 8, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
7 16 0.20
8 5 0.06
9 53 0.65
10 7 0.09
11 1 0.01
ACGTcount: A:0.29, C:0.03, G:0.21, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:14928764 original size:10 final size:11
Alignment explanation
Indices: 14928749--14928810 Score: 74
Period size: 12 Copynumber: 5.5 Consensus size: 11
14928739 TTTATGGATG
14928749 TTATGTA-TTA
1 TTATGTAGTTA
14928759 TTATGTA-TTA
1 TTATGTAGTTA
14928769 TTATGTAAGTTA
1 TTATGT-AGTTA
14928781 TTATGTAGGTTA
1 TTATGTA-GTTA
*
14928793 TTATGTAAGTCA
1 TTATGT-AGTTA
14928805 TTATGT
1 TTATGT
14928811 TGGTTATGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
10 16 0.34
11 2 0.04
12 28 0.60
13 1 0.02
ACGTcount: A:0.29, C:0.02, G:0.16, T:0.53
Consensus pattern (11 bp):
TTATGTAGTTA
Found at i:14928783 original size:12 final size:12
Alignment explanation
Indices: 14928756--14928810 Score: 78
Period size: 12 Copynumber: 4.8 Consensus size: 12
14928746 ATGTTATGTA
14928756 TTATTATGT-A-
1 TTATTATGTAAG
14928766 TTATTATGTAAG
1 TTATTATGTAAG
*
14928778 TTATTATGTAGG
1 TTATTATGTAAG
14928790 TTATTATGTAAG
1 TTATTATGTAAG
*
14928802 TCATTATGT
1 TTATTATGT
14928811 TGGTTATGTA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
10 9 0.22
11 1 0.03
12 30 0.75
ACGTcount: A:0.29, C:0.02, G:0.16, T:0.53
Consensus pattern (12 bp):
TTATTATGTAAG
Found at i:14928798 original size:24 final size:24
Alignment explanation
Indices: 14928749--14928817 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
14928739 TTTATGGATG
14928749 TTATGT-A-TTATTATGTA--TTA
1 TTATGTAAGTTATTATGTAGGTTA
14928769 TTATGTAAGTTATTATGTAGGTTA
1 TTATGTAAGTTATTATGTAGGTTA
* *
14928793 TTATGTAAGTCATTATGTTGGTTA
1 TTATGTAAGTTATTATGTAGGTTA
14928817 T
1 T
14928818 GTAAGTTGTG
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.14
21 1 0.02
22 10 0.23
24 26 0.60
ACGTcount: A:0.28, C:0.01, G:0.17, T:0.54
Consensus pattern (24 bp):
TTATGTAAGTTATTATGTAGGTTA
Found at i:14928926 original size:23 final size:22
Alignment explanation
Indices: 14928769--14928942 Score: 84
Period size: 24 Copynumber: 7.9 Consensus size: 22
14928759 TTATGTATTA
14928769 TTATGTAAGTTAT-TATGTAGG
1 TTATGTAAGTTATGTATGTAGG
* *
14928790 TTATTATGTAAGTCAT-TATGTTGG
1 ---TTATGTAAGTTATGTATGTAGG
*
14928814 TTATGTAAGTTGTGATATG-A--
1 TTATGTAAGTTATG-TATGTAGG
* *
14928834 TTA-CTAA-TTATGTATGTAAG
1 TTATGTAAGTTATGTATGTAGG
* *
14928854 TTATGATATA-TGATTGCTAAATTTAGG
1 TTATG-TA-AGTTA-TG-T--ATGTAGG
*
14928881 TTATATAAGTTATGTAT-TA--
1 TTATGTAAGTTATGTATGTAGG
14928900 -TATGTAAGCTTATGTATGTAGG
1 TTATGTAAG-TTATGTATGTAGG
14928922 TTATGTAAGTTATGTAATGTA
1 TTATGTAAGTTATGT-ATGTA
14928943 TCAATTTTTA
Statistics
Matches: 117, Mismatches: 14, Indels: 39
0.69 0.08 0.23
Matches are distributed among these distances:
17 4 0.03
18 12 0.10
19 11 0.09
20 8 0.07
21 13 0.11
22 10 0.09
23 20 0.17
24 22 0.19
25 4 0.03
26 4 0.03
27 9 0.08
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.47
Consensus pattern (22 bp):
TTATGTAAGTTATGTATGTAGG
Found at i:14928972 original size:19 final size:19
Alignment explanation
Indices: 14928948--14929010 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
14928938 ATGTATCAAT
14928948 TTTTAAAAATATATATAAA
1 TTTTAAAAATATATATAAA
* *
14928967 TTTTAAATATATATATATA
1 TTTTAAAAATATATATAAA
* *
14928986 -TATATAAACTATATATAAA
1 TTTTA-AAAATATATATAAA
*
14929005 TATTAA
1 TTTTAA
14929011 TAAGTTATGT
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
18 3 0.09
19 29 0.85
20 2 0.06
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (19 bp):
TTTTAAAAATATATATAAA
Found at i:14928976 original size:17 final size:17
Alignment explanation
Indices: 14928954--14929010 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 17
14928944 CAATTTTTAA
14928954 AAATATATATAAATTTT
1 AAATATATATAAATTTT
*
14928971 AAATATATATATATATATAT
1 AAATATATATA-A-AT-TTT
*
14928991 AAACTATATATAAATATT
1 AAA-TATATATAAATTTT
14929009 AA
1 AA
14929011 TAAGTTATGT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
17 11 0.33
18 4 0.12
19 4 0.12
20 6 0.18
21 8 0.24
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (17 bp):
AAATATATATAAATTTT
Found at i:14929013 original size:21 final size:20
Alignment explanation
Indices: 14928950--14929013 Score: 66
Period size: 21 Copynumber: 3.4 Consensus size: 20
14928940 GTATCAATTT
14928950 TTAA-AAATATATATAAAT-
1 TTAATAAATATATATAAATA
*
14928968 TT--TAAATATATATATATA
1 TTAATAAATATATATAAATA
14928986 -TATATAAACTATATATAAATA
1 TTA-ATAAA-TATATATAAATA
14929007 TTAATAA
1 TTAATAA
14929014 GTTATGTAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
17 14 0.38
18 2 0.05
20 4 0.11
21 15 0.41
22 2 0.05
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (20 bp):
TTAATAAATATATATAAATA
Found at i:14929025 original size:9 final size:9
Alignment explanation
Indices: 14929011--14929091 Score: 51
Period size: 9 Copynumber: 9.0 Consensus size: 9
14929001 TAAATATTAA
14929011 TAAGTTATG
1 TAAGTTATG
14929020 TAAGTTATG
1 TAAGTTATG
* *
14929029 TATTA-TAAATT
1 TA--AGT-TATG
*
14929040 TAAGTTGTG
1 TAAGTTATG
14929049 TAAGTTATG
1 TAAGTTATG
14929058 -AA-TTATG
1 TAAGTTATG
*
14929065 TAAGATATG
1 TAAGTTATG
* *
14929074 TAAATTACG
1 TAAGTTATG
*
14929083 TAAGATATG
1 TAAGTTATG
14929092 AAATTTGAAC
Statistics
Matches: 53, Mismatches: 13, Indels: 12
0.68 0.17 0.15
Matches are distributed among these distances:
7 5 0.09
8 4 0.08
9 37 0.70
10 2 0.04
11 5 0.09
ACGTcount: A:0.38, C:0.01, G:0.19, T:0.42
Consensus pattern (9 bp):
TAAGTTATG
Found at i:14929085 original size:18 final size:17
Alignment explanation
Indices: 14929048--14929096 Score: 64
Period size: 18 Copynumber: 2.9 Consensus size: 17
14929038 TTTAAGTTGT
* *
14929048 GTAAGTTATG-AATTAT
1 GTAAGATATGAAATTAC
14929064 GTAAGATATGTAAATTAC
1 GTAAGATATG-AAATTAC
14929082 GTAAGATATGAAATT
1 GTAAGATATGAAATT
14929097 TGAACTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 9 0.31
17 5 0.17
18 15 0.52
ACGTcount: A:0.43, C:0.02, G:0.18, T:0.37
Consensus pattern (17 bp):
GTAAGATATGAAATTAC
Found at i:14932804 original size:115 final size:115
Alignment explanation
Indices: 14932483--14932879 Score: 489
Period size: 115 Copynumber: 3.5 Consensus size: 115
14932473 GCTAACAAAT
* *
14932483 AAGCGCCGCTAATAATATGATTTAGCGGCGATTTCTCGTGAACGCCACTAATTCCAGTATACATC
1 AAGCGCCGCTAATAATATAATTTAGCGGCGATTTCTCCTGAACGCCACTAATTCCAGTATACATC
* * * *
14932548 AAGATTTAAACACAGCGTTTCGGTTAATATATATTGCGACGCTTATAAGA
66 AAGATTTAAACGCAGCGTTTCGGTTAATATATCTTGCGGCGCTTCTAAGA
* * * * * * *
14932598 AAGCGCCGCTAATAGTATACTTTTGCGGCG--TT-TACGGAAAGCGCCACTAATTCAAGTATACG
1 AAGCGCCGCTAATAATATAATTTAGCGGCGATTTCTCCTG-AA-CGCCACTAATTCCAGTATACA
* * * *
14932660 TTAAGATCTAAACGCAGCGTTTAGGTTAATATATCTTGCGGCGCTTCTAATA
64 TCAAGATTTAAACGCAGCGTTTCGGTTAATATATCTTGCGGCGCTTCTAAGA
* *
14932712 AAGCGCTGCTAATAATATAATTTAGCGGCGATTTCTCCTGAACGCCACTAACTCCAGTATACATC
1 AAGCGCCGCTAATAATATAATTTAGCGGCGATTTCTCCTGAACGCCACTAATTCCAGTATACATC
*
14932777 AAGATTTAAACGCAGCGTTTCCGTTAATATATCTTGCGGCGCTTCTAAGA
66 AAGATTTAAACGCAGCGTTTCGGTTAATATATCTTGCGGCGCTTCTAAGA
* * * * * * *
14932827 AAGCGACACTAATAGTATACTTTTGCGGCG-TTTC-CATAAAGCGCCACTAATTC
1 AAGCGCCGCTAATAATATAATTTAGCGGCGATTTCTCCTGAA-CGCCACTAATTC
14932880 TAATATACCT
Statistics
Matches: 236, Mismatches: 40, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
112 2 0.01
113 8 0.03
114 104 0.44
115 115 0.49
116 4 0.02
117 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (115 bp):
AAGCGCCGCTAATAATATAATTTAGCGGCGATTTCTCCTGAACGCCACTAATTCCAGTATACATC
AAGATTTAAACGCAGCGTTTCGGTTAATATATCTTGCGGCGCTTCTAAGA
Found at i:14932831 original size:229 final size:229
Alignment explanation
Indices: 14932466--14932887 Score: 668
Period size: 229 Copynumber: 1.8 Consensus size: 229
14932456 TGAAGATCTT
* *
14932466 TTGCGGCGCTAACAAATAAGCGCCGCTAATAATATGATTTAGCGGCGATTTCTCGTGAACGCCAC
1 TTGCGGCGCTAACAAATAAGCGCCGCTAATAATATAATTTAGCGGCGATTTCTCCTGAACGCCAC
* *
14932531 TAATTCCAGTATACATCAAGATTTAAACACAGCGTTTCGGTTAATATATATTGCGACGCTTATAA
66 TAACTCCAGTATACATCAAGATTTAAACACAGCGTTTCCGTTAATATATATTGCGACGCTTATAA
* * *
14932596 GAAAGCGCCGCTAATAGTATACTTTTGCGGCGTTTACGGAAAGCGCCACTAATTC-AAGTATACG
131 GAAAGCGACACTAATAGTATACTTTTGCGGCGTTTACAGAAAGCGCCACTAATTCTAA-TATACG
14932660 TTAAGATCTAAACGCAGCGTTTAGGTTAATATATC
195 TTAAGATCTAAACGCAGCGTTTAGGTTAATATATC
* * *
14932695 TTGCGGCGCT-TCTAATAAAGCGCTGCTAATAATATAATTTAGCGGCGATTTCTCCTGAACGCCA
1 TTGCGGCGCTAACAAAT-AAGCGCCGCTAATAATATAATTTAGCGGCGATTTCTCCTGAACGCCA
* * * *
14932759 CTAACTCCAGTATACATCAAGATTTAAACGCAGCGTTTCCGTTAATATATCTTGCGGCGCTTCTA
65 CTAACTCCAGTATACATCAAGATTTAAACACAGCGTTTCCGTTAATATATATTGCGACGCTTATA
* *
14932824 AGAAAGCGACACTAATAGTATACTTTTGCGGCGTTTCCATAAAGCGCCACTAATTCTAATATAC
130 AGAAAGCGACACTAATAGTATACTTTTGCGGCGTTTACAGAAAGCGCCACTAATTCTAATATAC
14932888 CTCAATACCA
Statistics
Matches: 175, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
228 4 0.02
229 169 0.97
230 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (229 bp):
TTGCGGCGCTAACAAATAAGCGCCGCTAATAATATAATTTAGCGGCGATTTCTCCTGAACGCCAC
TAACTCCAGTATACATCAAGATTTAAACACAGCGTTTCCGTTAATATATATTGCGACGCTTATAA
GAAAGCGACACTAATAGTATACTTTTGCGGCGTTTACAGAAAGCGCCACTAATTCTAATATACGT
TAAGATCTAAACGCAGCGTTTAGGTTAATATATC
Found at i:14932923 original size:115 final size:112
Alignment explanation
Indices: 14932525--14932892 Score: 423
Period size: 114 Copynumber: 3.2 Consensus size: 112
14932515 TTCTCGTGAA
* * * * * *
14932525 CGCCACTAATTCCAGTATACATCAAGATTTAAACACAGCGTTTCGGTTAATATATATTGCGACGC
1 CGCCACTAATT-CAATATACATCAAGATCTAAACGCAGCGTTTAGGTTAATATATCTTGCGGCGC
* * **
14932590 TTATAAGAAAGCGCCGCTAATAGTATACTTTTGCGGCGTTTACGGAAAG
65 TTCTAAGAAAGCG-CGCTAATAGTATACTTTTGCGGCGTTTCCATAAAG
* *
14932639 CGCCACTAATTCAAGTATACGTTAAGATCTAAACGCAGCGTTTAGGTTAATATATCTTGCGGCGC
1 CGCCACTAATTCAA-TATACATCAAGATCTAAACGCAGCGTTTAGGTTAATATATCTTGCGGCGC
* * * * * *
14932704 TTCTAATAAAGCGCTGCTAATAATATAATTTAGCGGCGATTTCTCCTGAA-
65 TTCTAAGAAAGCGC-GCTAATAGTATACTTTTGCGGCG-TTTC-CATAAAG
* * * **
14932754 CGCCACTAACTCCAGTATACATCAAGATTTAAACGCAGCGTTTCCGTTAATATATCTTGCGGCGC
1 CGCCACTAA-TTCAATATACATCAAGATCTAAACGCAGCGTTTAGGTTAATATATCTTGCGGCGC
*
14932819 TTCTAAGAAAGCGACACTAATAGTATACTTTTGCGGCGTTTCCATAAAG
65 TTCTAAGAAAGCG-CGCTAATAGTATACTTTTGCGGCGTTTCCATAAAG
*
14932868 CGCCACTAATTCTAATATACCTCAA
1 CGCCACTAATTC-AATATACATCAA
14932893 TACCAAACTC
Statistics
Matches: 212, Mismatches: 34, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
113 9 0.04
114 108 0.51
115 88 0.42
116 7 0.03
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (112 bp):
CGCCACTAATTCAATATACATCAAGATCTAAACGCAGCGTTTAGGTTAATATATCTTGCGGCGCT
TCTAAGAAAGCGCGCTAATAGTATACTTTTGCGGCGTTTCCATAAAG
Found at i:14935418 original size:20 final size:20
Alignment explanation
Indices: 14935368--14935409 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
14935358 ATCAATTTCT
* *
14935368 AATTACATAAAATTAAGATA
1 AATTATATAATATTAAGATA
14935388 AATTATATAATATTAAGATA
1 AATTATATAATATTAAGATA
14935408 AA
1 AA
14935410 ATTTCTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (20 bp):
AATTATATAATATTAAGATA
Found at i:14935445 original size:30 final size:30
Alignment explanation
Indices: 14935409--14935595 Score: 157
Period size: 30 Copynumber: 6.1 Consensus size: 30
14935399 ATTAAGATAA
14935409 AATTTCTAATTACATAACTTATATAATATT
1 AATTTCTAATTACATAACTTATATAATATT
* * * * *
14935439 AATTTCTAATTTC-TAAGTACACATCAATTTCT
1 AATTTCTAATTACATAACT-TATAT-AATAT-T
* * * * *
14935471 AATTT-TATATAACTTATGC-AATATTAAGATT
1 AATTTCTA-ATTACATA-ACTTATA-TAATATT
14935502 AAATTT-TATTATTACATAACTTATATAATATT
1 -AATTTCTA--ATTACATAACTTATATAATATT
*
14935534 AATTTCTAATAACATAACTTATATAATATT
1 AATTTCTAATTACATAACTTATATAATATT
*
14935564 AATTTCTTATTACATAACTTATATAATATT
1 AATTTCTAATTACATAACTTATATAATATT
14935594 AA
1 AA
14935596 GATAAAATTT
Statistics
Matches: 125, Mismatches: 21, Indels: 22
0.74 0.12 0.13
Matches are distributed among these distances:
29 4 0.03
30 66 0.53
31 12 0.10
32 30 0.24
33 13 0.10
ACGTcount: A:0.42, C:0.10, G:0.02, T:0.46
Consensus pattern (30 bp):
AATTTCTAATTACATAACTTATATAATATT
Found at i:14935450 original size:37 final size:37
Alignment explanation
Indices: 14935385--14935459 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
14935375 TAAAATTAAG
*
14935385 ATAAATTATATAATATTAAGATAAAATTTCTAATTAC
1 ATAAATTATATAATATTAAGATAAAATTTCTAAGTAC
* ** **
14935422 ATAACTTATATAATATTAATTTCTAATTTCTAAGTAC
1 ATAAATTATATAATATTAAGATAAAATTTCTAAGTAC
14935459 A
1 A
14935460 CATCAATTTC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.43
Consensus pattern (37 bp):
ATAAATTATATAATATTAAGATAAAATTTCTAAGTAC
Found at i:14935682 original size:25 final size:26
Alignment explanation
Indices: 14935649--14935702 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
14935639 TTATATAATA
*
14935649 TTAAGATAAAATT-CATAATACATAAC
1 TTAAGAT-AAATTACATAATACACAAC
*
14935675 TTAA-ATAACTTACATAATACACAAC
1 TTAAGATAAATTACATAATACACAAC
14935700 TTA
1 TTA
14935703 TTACATAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 4 0.16
25 17 0.68
26 4 0.16
ACGTcount: A:0.52, C:0.15, G:0.02, T:0.31
Consensus pattern (26 bp):
TTAAGATAAATTACATAATACACAAC
Found at i:14935700 original size:16 final size:16
Alignment explanation
Indices: 14935679--14935744 Score: 60
Period size: 16 Copynumber: 3.8 Consensus size: 16
14935669 CATAACTTAA
14935679 ATAACTTACATAATAC
1 ATAACTTACATAATAC
* *
14935695 ACAACTTATTACATAACTTAA
1 ATAAC---TTACATAA--TAC
14935716 ATAACTTACATAATAC
1 ATAACTTACATAATAC
*
14935732 ATAACTTTCATAA
1 ATAACTTACATAA
14935745 CTTACATTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
16 18 0.45
18 8 0.20
19 8 0.20
21 6 0.15
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.33
Consensus pattern (16 bp):
ATAACTTACATAATAC
Found at i:14935711 original size:37 final size:37
Alignment explanation
Indices: 14935667--14935738 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
14935657 AAATTCATAA
14935667 TACATAACTTAAATAACTTACATAATACACAACTTAT
1 TACATAACTTAAATAACTTACATAATACACAACTTAT
*
14935704 TACATAACTTAAATAACTTACATAATACATAACTT
1 TACATAACTTAAATAACTTACATAATACACAACTT
14935739 TCATAACTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (37 bp):
TACATAACTTAAATAACTTACATAATACACAACTTAT
Found at i:14935732 original size:25 final size:25
Alignment explanation
Indices: 14935704--14936121 Score: 149
Period size: 25 Copynumber: 16.5 Consensus size: 25
14935694 CACAACTTAT
*
14935704 TACATAACTTAAATAACTTACATAA
1 TACATAACTTACATAACTTACATAA
* *
14935729 TACATAACTTTCATAACTTACATTA
1 TACATAACTTACATAACTTACATAA
* * *
14935754 TTCACAACTTGGCCGATTAA-TTA-ATATTA
1 TACATAACTT--AC-A-TAACTTACATA--A
14935783 TACATAACTTACAT-A--T--ATAA
1 TACATAACTTACATAACTTACATAA
* * **
14935803 CTCACATAACTTAGATAGCTTACATTC
1 -T-ACATAACTTACATAACTTACATAA
* *
14935830 TACACAACTTACATAACATACATAA
1 TACATAACTTACATAACTTACATAA
*
14935855 TACATAACTTACATAACTAACATAA
1 TACATAACTTACATAACTTACATAA
* *
14935880 TACATAGCTTACATAA--TACACAA
1 TACATAACTTACATAACTTACATAA
* *
14935903 CTTACATAGCTTACATAA--TAAATAA
1 --TACATAACTTACATAACTTACATAA
* ** *
14935928 CTTAAATAAAATAC--AACTTACATAGCT
1 --TACATAACTTACATAACTTACATA--A
* *
14935955 TACATGATACATAGCTTACACTTACATAA
1 TACAT-A-ACTTA-CATA-ACTTACATAA
*
14935984 -A-A-AAGTCTATGACATAGCTTACATAA
1 TACATAA--CT-T-ACATAACTTACATAA
* *
14936010 TACATAACTTACATAGCATACATAA
1 TACATAACTTACATAACTTACATAA
* **
14936035 TAAATAACTTACATAAAATACA-AA
1 TACATAACTTACATAACTTACATAA
* *
14936059 TTACATAGCTTACATAA--TACGTAA
1 -TACATAACTTACATAACTTACATAA
*
14936083 CTTACATAACTTATATAA--TACATAA
1 --TACATAACTTACATAACTTACATAA
*
14936108 CTTACATAATTTAC
1 --TACATAACTTAC
14936122 TTAATACAAA
Statistics
Matches: 306, Mismatches: 52, Indels: 70
0.71 0.12 0.16
Matches are distributed among these distances:
20 1 0.00
21 1 0.00
22 15 0.05
23 11 0.04
24 6 0.02
25 208 0.68
26 14 0.05
27 18 0.06
28 8 0.03
29 14 0.05
30 1 0.00
31 9 0.03
ACGTcount: A:0.46, C:0.19, G:0.04, T:0.32
Consensus pattern (25 bp):
TACATAACTTACATAACTTACATAA
Found at i:14935738 original size:155 final size:152
Alignment explanation
Indices: 14935409--14935703 Score: 359
Period size: 155 Copynumber: 1.9 Consensus size: 152
14935399 ATTAAGATAA
** **
14935409 AATTTC-TAATTACATAACTTATATAATATTAATTTCTAATTTCTAAGTACACATCAATTTCTAA
1 AATTTCATAA-TACATAACTTATATAATATTAAGATAAAATTTCTAAGTACACATCAATTTCTAA
* * * * * *
14935473 TTTTATATAACTTATGCAATATTAAGATTAAATTTTATTATTACATAACTTATATAATATTAATT
65 TTTTAGATAACTTATACAATATTAAGATTAAAATTCATTAATACATAACTTAAATAATATTAA--
*
14935538 TCTAATAACATAACTTATATAATATT
128 T-TAATAACACAACTTATATAATATT
* * *
14935564 AATTTCTTATTACATAACTTATATAATATTAAGATAAAATTTCTAATTACACATCAATTTCTAAT
1 AATTTCATAATACATAACTTATATAATATTAAGATAAAATTTCTAAGTACACATCAATTTCTAAT
* *
14935629 TTTAGATAACTTATATAATATTAAGA-TAAAATTCA-TAATACATAACTTAAATAA-CTTACA-T
66 TTTAGATAACTTATACAATATTAAGATTAAAATTCATTAATACATAACTTAAATAATATTA-ATT
14935690 AAT-ACACAACTTAT
130 AATAACACAACTTAT
14935704 TACATAACTT
Statistics
Matches: 123, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
148 10 0.08
149 4 0.03
152 3 0.02
153 18 0.15
154 7 0.06
155 79 0.64
156 2 0.02
ACGTcount: A:0.44, C:0.11, G:0.02, T:0.43
Consensus pattern (152 bp):
AATTTCATAATACATAACTTATATAATATTAAGATAAAATTTCTAAGTACACATCAATTTCTAAT
TTTAGATAACTTATACAATATTAAGATTAAAATTCATTAATACATAACTTAAATAATATTAATTA
ATAACACAACTTATATAATATT
Found at i:14935884 original size:41 final size:41
Alignment explanation
Indices: 14935839--14936117 Score: 211
Period size: 41 Copynumber: 6.4 Consensus size: 41
14935829 CTACACAACT
* *
14935839 TACATAACATACATAATACATAACTTACATAACTAACATAA
1 TACATAACTTACATAATACATAACTTACATAACTTACATAA
* * *
14935880 TACATAGCTTACATAATACACAACTTACATAGCTTACATAA
1 TACATAACTTACATAATACATAACTTACATAACTTACATAA
* * * * * * *
14935921 TAAATAACTTAAATAAAATACAACTTACATAGCTTACATGA
1 TACATAACTTACATAATACATAACTTACATAACTTACATAA
* * * *
14935962 TACATAGCTTACACTTACATAAAAAAGTCTATGACATAGCTTACATAA
1 TACATAACTTACA--TA-ATACATAA--CT-T-ACATAACTTACATAA
*
14936010 TACATAACTTACATAGCATACATAA--TAAATAACTTACATAAAA
1 TACATAACTTACATA--ATACATAACTTACATAACTTACAT--AA
* *
14936053 TACAAATTACATAGCTTACATAATACGTAACTTACATAACTTATATAA
1 TAC--A-T--A-A-CTTACATAATACATAACTTACATAACTTACATAA
14936101 TACATAACTTACATAAT
1 TACATAACTTACATAAT
14936118 TTACTTAATA
Statistics
Matches: 193, Mismatches: 26, Indels: 38
0.75 0.10 0.15
Matches are distributed among these distances:
41 102 0.53
42 2 0.01
43 8 0.04
44 5 0.03
45 2 0.01
46 6 0.03
47 8 0.04
48 39 0.20
49 1 0.01
50 20 0.10
ACGTcount: A:0.48, C:0.18, G:0.04, T:0.30
Consensus pattern (41 bp):
TACATAACTTACATAATACATAACTTACATAACTTACATAA
Found at i:14936019 original size:114 final size:114
Alignment explanation
Indices: 14935881--14936088 Score: 353
Period size: 114 Copynumber: 1.8 Consensus size: 114
14935871 CTAACATAAT
* *
14935881 ACATAGCTTACATAATACACAACTTACATAGCTTACATAATAAATAACTTAAATAAAATACAACT
1 ACATAGCTTACATAATACACAACTTACATAGCATACATAATAAATAACTTAAATAAAATACAAAT
* *
14935946 TACATAGCTTACATGATACATAGCTTACACTTACATAAAAAAGTCTATG
66 TACATAGCTTACATAATACATAACTTACACTTACATAAAAAAGTCTATG
* *
14935995 ACATAGCTTACATAATACATAACTTACATAGCATACATAATAAATAACTTACATAAAATACAAAT
1 ACATAGCTTACATAATACACAACTTACATAGCATACATAATAAATAACTTAAATAAAATACAAAT
*
14936060 TACATAGCTTACATAATACGTAACTTACA
66 TACATAGCTTACATAATACATAACTTACA
14936089 TAACTTATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
114 87 1.00
ACGTcount: A:0.48, C:0.18, G:0.05, T:0.29
Consensus pattern (114 bp):
ACATAGCTTACATAATACACAACTTACATAGCATACATAATAAATAACTTAAATAAAATACAAAT
TACATAGCTTACATAATACATAACTTACACTTACATAAAAAAGTCTATG
Found at i:14936111 original size:16 final size:16
Alignment explanation
Indices: 14935782--14936091 Score: 92
Period size: 16 Copynumber: 19.1 Consensus size: 16
14935772 AATTAATATT
14935782 ATACATAACTTACAT-
1 ATACATAACTTACATA
*
14935797 AT--ATAACTCACATA
1 ATACATAACTTACATA
* * *
14935811 ACTTAGATAGCTTACATT
1 A--TACATAACTTACATA
* *
14935829 CTACACAACTTACATAA
1 ATACATAACTTACAT-A
14935846 CATACATAA--TACATA
1 -ATACATAACTTACATA
*
14935861 ACTTACATAACTAACATA
1 A--TACATAACTTACATA
*
14935879 ATACATAGCTTACATA
1 ATACATAACTTACATA
*
14935895 ATACACAACTTACATA
1 ATACATAACTTACATA
* *
14935911 GCTTACATAA--TAAATA
1 --ATACATAACTTACATA
* **
14935927 ACTTAAATAAAATACA-A
1 A--TACATAACTTACATA
* * *
14935944 CTTACATAGCTTACATG
1 -ATACATAACTTACATA
*
14935961 ATACATAGCTTACACT-
1 ATACATAACTTACA-TA
* * *
14935977 -TACATAA--AAAAGTCT
1 ATACATAACTTACA-T-A
*
14935992 ATGACATAGCTTACATA
1 AT-ACATAACTTACATA
14936009 ATACATAACTTACATA
1 ATACATAACTTACATA
*
14936025 GCATACATAA--TAAATA
1 --ATACATAACTTACATA
**
14936041 ACTTACATAAAATACA-A
1 A--TACATAACTTACATA
*
14936058 ATTACATAGCTTACATA
1 A-TACATAACTTACATA
*
14936075 ATACGTAACTTACATA
1 ATACATAACTTACATA
14936091 A
1 A
14936092 CTTATATAAT
Statistics
Matches: 217, Mismatches: 45, Indels: 65
0.66 0.14 0.20
Matches are distributed among these distances:
13 13 0.06
14 3 0.01
15 9 0.04
16 135 0.62
17 13 0.06
18 42 0.19
19 2 0.01
ACGTcount: A:0.47, C:0.19, G:0.04, T:0.29
Consensus pattern (16 bp):
ATACATAACTTACATA
Found at i:14941639 original size:21 final size:21
Alignment explanation
Indices: 14941615--14941659 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
14941605 CAGCAACTTA
*
14941615 AAGCTGAGGCAGAAGCGAGGG
1 AAGCGGAGGCAGAAGCGAGGG
* *
14941636 AAGCGGAGGCTGTAGCGAGGG
1 AAGCGGAGGCAGAAGCGAGGG
14941657 AAG
1 AAG
14941660 TAGAGCAGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.13, G:0.49, T:0.07
Consensus pattern (21 bp):
AAGCGGAGGCAGAAGCGAGGG
Found at i:14942077 original size:43 final size:43
Alignment explanation
Indices: 14942019--14942255 Score: 262
Period size: 43 Copynumber: 5.5 Consensus size: 43
14942009 ATCTATTGCT
* *
14942019 GCGTTTTTGGAAAAAGCGCCGCTAAAGAACATGACCTTTAGCG
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGAACATGACCTTTAGCG
* * * * * * *
14942062 GCGCTTGTGGGAAAAGTGCCACTAAA-AGTCAAGATCTATAGCG
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGA-ACATGACCTTTAGCG
* *
14942105 GCGATTGTGGGATAAGCGCCGCTAAAGAACATGACCTTTAGCG
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGAACATGACCTTTAGCG
* * * * * **
14942148 GCATTTTTGAGATAAGCGCCGCTAAAGAGCATGACCTTTAATG
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGAACATGACCTTTAGCG
* *
14942191 GCGTTTGTGGGATAAGCGCCGCTAAAGAACATGAGCTTTAGCG
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGAACATGACCTTTAGCG
14942234 GCGTTTGT-GGAATAAGCGCCGC
1 GCGTTTGTGGGAA-AAGCGCCGC
14942256 AAAACTTAGC
Statistics
Matches: 159, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
42 4 0.03
43 154 0.97
44 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (43 bp):
GCGTTTGTGGGAAAAGCGCCGCTAAAGAACATGACCTTTAGCG
Found at i:14942254 original size:86 final size:86
Alignment explanation
Indices: 14942032--14942259 Score: 293
Period size: 86 Copynumber: 2.7 Consensus size: 86
14942022 TTTTTGGAAA
* * *
14942032 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGCTTGTGGGAA-AAGTGCCACTAAAAGTCAAGA
1 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGT-GGAATAAGCGCCGCTAAAAGTCAAGA
* *
14942096 TCTATAGCGGCGATTGTGGGAT
65 CCTATAACGGCGATTGTGGGAT
* * *
14942118 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCATTT-TTGAGATAAGCGCCGCTAAAGAG-CATG
1 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTGGA-ATAAGCGCCGCTAAA-AGTCAAG
* * *
14942181 ACCTTTAATGGCGTTTGTGGGAT
64 ACCTATAACGGCGATTGTGGGAT
*
14942204 AAGCGCCGCTAAAGAACATGAGCTTTAGCGGCGTTTGTGGAATAAGCGCCGC-AAAA
1 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTGGAATAAGCGCCGCTAAAA
14942260 CTTAGCGACA
Statistics
Matches: 124, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
84 3 0.02
85 5 0.04
86 111 0.90
87 5 0.04
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (86 bp):
AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTGGAATAAGCGCCGCTAAAAGTCAAGAC
CTATAACGGCGATTGTGGGAT
Found at i:14945890 original size:36 final size:36
Alignment explanation
Indices: 14945843--14945913 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
14945833 AGTTGAATTG
14945843 AAGTTAACATTACTTTCTTTATGTAGATATATATAT
1 AAGTTAACATTACTTTCTTTATGTAGATATATATAT
*
14945879 AAGTTAACATTAGTTTCTTTATGTAGATATATATA
1 AAGTTAACATTACTTTCTTTATGTAGATATATATA
14945914 CATATATATA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.46
Consensus pattern (36 bp):
AAGTTAACATTACTTTCTTTATGTAGATATATATAT
Found at i:14947825 original size:709 final size:709
Alignment explanation
Indices: 14945879--14950848 Score: 8282
Period size: 709 Copynumber: 7.0 Consensus size: 709
14945869 ATATATATAT
* *
14945879 AAGTTAACATTAGTTTCTTTATGTAGATATATATACATATATATATCTTTATTCCATTTTGTAAT
1 AAGTTCACATTACTTTCTTTATGTAGATATATATAC--ATATATATCTTTATTCCATTTTGTAAT
* * *
14945944 TTTAATTTTAAATTTTATCTGTTAAGACAGGATATATATTCTTATTTGATAATAAAGCTGTAGAT
64 TTGAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGATGTAGAT
* *
14946009 GACTGTCTCCATGCATGCGT-GTAAAACAAAAAAATTATAAAATAATTTTAAAGCAAGGTTTTAA
129 GACTGTCTGCACGCATGCGTAG-AAAACAAAAAAATTATAAAATAATTTTAAAGCAAGGTTTTAA
*
14946073 TTACAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAG
193 TTGCAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAG
* *
14946138 GATCAAGGCCAATGAATTACTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAAT
258 GATCAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAAT
* *
14946203 TACTAATCTAATTAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATTAAGAAATTGA-ATT
323 TACTAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATT-ACATT
14946267 TAAGTTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATC
387 TAAGTTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATC
*
14946332 AAAGCAATGGTCGATTAATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCAC
452 AAAGCAATGGTCAATTAATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCAC
* *
14946397 TCACCACTCGTAACTCGGAATCACCTTTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCT
517 TCACCACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCT
* * * * * *
14946462 CCTCTTGATCTCACCTAGGCACATAGATCTCTTTTTGGTCTCACTACTAAACACGTTCATAACAA
582 CCTCTCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCATTCATAATAA
*
14946527 AGTTATGCACGATAGGATATCCTTTCGGTCTCACCTATCTGACATAGGTGAATAGTTGAATTG
647 AGTTATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
*
14946590 AAGTTCACATTACTTTCTTTATGTAGATTTATATACATATATATCTTTATTCCATTTTGTAATTT
1 AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCCATTTTGTAATTT
14946655 GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGATGTAGATGA
66 GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGATGTAGATGA
* *
14946720 ATGTCTGGACGCATGCGTAGAAAAC---AAAATTATAAAATAATTTTAAAGCAAGGTTTTAATTG
131 CTGTCTGCACGCATGCGTAGAAAACAAAAAAATTATAAAATAATTTTAAAGCAAGGTTTTAATTG
*
14946782 CAAGTGTACAATGTCGAGATGTAATATTTATTGTGTTACAAGGGAACATGGAGTATTCCAAGGAT
196 CAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGGAT
*
14946847 CAAGGGCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATTAC
261 CAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATTAC
* *
14946912 TAATCTAATCACTTCAAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTACATTTAAG
326 TAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTACATTTAAG
*
14946977 TTATCAACAAAACTAAATAACCTAATCACTTCCACCTTGCCTTAGAACTATGCAAATTATCAAAG
391 TTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAAG
* * *
14947042 CATTGGTCAATTGATCTATTAATTGCTCTCTGAGTTAATAAACATGCTTCGAAGATATCACTCAC
456 CAATGGTCAATTAATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTCAC
* * * *
14947107 CACTCGTAACTCGAAATCTTCTCTTAGTCTCATCCTAGCTATAAATTACCACCTAAGATCTCCTC
521 CACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCCTC
*
14947172 TCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACACATTCATAATAAAGTT
586 TCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCATTCATAATAAAGTT
14947237 ATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
651 ATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
*
14947296 AAGTTTACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCCATTTTGTAATTT
1 AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCCATTTTGTAATTT
* *
14947361 GAATTTTAAATTTTATCTGTTAAGGCAGGATATATTTTCTTATTTGATAATAAAGCTGTAGATGA
66 GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGATGTAGATGA
* *
14947426 CTGTCTGCACGCATGCGTAGAAAACAAAAAAATTATAAAATAATTTTAAAGTAAGGTTTTAATTA
131 CTGTCTGCACGCATGCGTAGAAAACAAAAAAATTATAAAATAATTTTAAAGCAAGGTTTTAATTG
14947491 CAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGGAT
196 CAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGGAT
* * *
14947556 CAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTAACAAGTCAAATATTAAATAAGTAATTAC
261 CAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATTAC
14947621 TAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTACATTTAAG
326 TAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTACATTTAAG
14947686 TTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAAG
391 TTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAAG
* * * *
14947751 CAATGGTCAATTAATCTATTAATTGCTCTCTGAGTTAATAAAAACGGTTCGAAGATATCACTCAC
456 CAATGGTCAATTAATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTCAC
** * * *
14947816 CACTCGTAACTATGAATCTTCTCTTAGTCTCATCCTAGCTATAAATTACCACCTAAGATCTCCTC
521 CACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCCTC
*
14947881 TCGATGTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCATTCATAATAAAGTT
586 TCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCATTCATAATAAAGTT
14947946 ATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
651 ATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
* *
14948005 AAGTTCACGTTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCGATTTTGTAATTT
1 AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCCATTTTGTAATTT
* * * * *
14948070 GAATTTTAAATTTTATCTCTTAAGGCAGGATAAATATTCTTATTTGATAATAAAGCTATAGGTGA
66 GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGATGTAGATGA
* *
14948135 CTGTCTGCACGCATGCGTAGAAAACAAAAAAATTATAAAATAATTTTAAAGTAAGGTTTTAATTA
131 CTGTCTGCACGCATGCGTAGAAAACAAAAAAATTATAAAATAATTTTAAAGCAAGGTTTTAATTG
*
14948200 CAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCTAAGGAT
196 CAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGGAT
*
14948265 CAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGTAATTAC
261 CAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATTAC
14948330 TAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTACATTTAAG
326 TAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTACATTTAAG
*
14948395 TTATCAACAAAACTAAATAACCTAATCACTTCCACCTTGCCTTAGAACTATGCAAATTATCAAAG
391 TTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAAG
* * *
14948460 AAATGGTCAATTAATCTATCAATTGCTCACTGAGTTAATAAACTTGCTTCGAAGATATCACTCAC
456 CAATGGTCAATTAATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTCAC
*
14948525 CACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAAAAATTACCACCTAAGATCTCCTC
521 CACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCCTC
* * * ** *
14948590 TTGACCTCCCTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGTGTTCATAAAAAAGTT
586 TCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCATTCATAATAAAGTT
** *
14948655 ATGCACGATAACATATCCTTTCGGTCTCACCTATCTCACATTGGTGAATAGTTGAATTG
651 ATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
* *
14948714 AAGTTTACATTACTTTCTTTATGTAG--ATATATACGTATATATCTTTATTCCATTTTGTAATTT
1 AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCCATTTTGTAATTT
14948777 GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGATGTAGATGA
66 GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGATGTAGATGA
* * * *
14948842 CTGTCTGCACGCATGCGTAGAAAATAAAAAAAATATAAACTAATTTTTAAAGAAAGGTTTTAATT
131 CTGTCTGCACGCATGCGTAGAAAACAAAAAAATTATAAAATAA-TTTTAAAGCAAGGTTTTAATT
* * *
14948907 GCAGGTGTACAATGTCGAGATCTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCTAAGGA
195 GCAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGGA
* *
14948972 TCAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATGATGCAATTA
260 TCAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATTA
* * *
14949037 CTAATCTAACCAGTTCGAGAATTATTAGTGCAACTGAATAATAATAATGAAGAAATTAAATTTAA
325 CTAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTACATTTAA
14949102 GTTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAA
390 GTTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAA
14949167 GCAATGGTCAATTAATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTCA
455 GCAATGGTCAATTAATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTCA
* *
14949232 CCCCTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAAAAATTACCACCTAAGATCTCCT
520 CCACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCCT
* *
14949297 CTTGATCTCACTTACGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCATTCATAATAAAGT
585 CTCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCATTCATAATAAAGT
14949362 TATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
650 TATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
*
14949422 AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCGATTTTGTAATTT
1 AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCCATTTTGTAATTT
* ** * *
14949487 GAGTTTTAAATTTTATCTGTTTTGGCAGGATATAAATTCTTATTTGATAATAAATATGTAGATGA
66 GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGATGTAGATGA
* * *
14949552 CTGTGTGCACGCATGCGTTGAAAACAAAAAAAAATTATAAAATAATTTTAAAGCAATGTTTTAAT
131 CTGTCTGCACGCATGCGTAGAAAAC--AAAAAAATTATAAAATAATTTTAAAGCAAGGTTTTAAT
*
14949617 TGCAAGTGTACAATGTCGAGATGTAATATTTATAGTATTACAAGGGAACATGGAGTATTCCAAGG
194 TGCAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGG
* *
14949682 ATCAAGTCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATGTTAATTAAGCAATT
259 ATCAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATT
*
14949747 ACTAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATCATAATAATGAAGAAATT-CAATTT
324 ACTAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTAC-ATTT
14949811 AAGTTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCA
388 AAGTTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCA
14949876 AAGCAATGGTCAATTAATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACT
453 AAGCAATGGTCAATTAATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACT
* *
14949941 CACCACTTGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATGACCACCTAAGATCTC
518 CACCACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTC
* * * *
14950006 CTCTCGATCTCACTTAGGCACGTAGATATCTTTTTGGTCTCACTACTTAACGCGTTCATGATAAA
583 CTCTCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCATTCATAATAAA
* * *
14950071 GTTATGTACGCTAGGATATCCTTTCGGTCTCACCTATCTGACATAGGTGAATAGTTGAATTG
648 GTTATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
14950133 AAGTTCACATTACTTTCTTTTTGTAGATATATATAAGTTAACATTACTTTGTTTATGTAGATATA
1 AAGTTCACATTA----C---------------------T----TT-C----TTTATGTAGATATA
*
14950198 TATACATATATATCTTTATTCCATTTTGTAATTTGAATTTTAAATTTTATCTGTTAAGGCTGGAT
32 TATACATATATATCTTTATTCCATTTTGTAATTTGAATTTTAAATTTTATCTGTTAAGGCAGGAT
14950263 ATATATTCTTATTTGATAATAAAGATGTAGATGACTGTCTGCACGCATGCGTAGAAAACAAAAAA
97 ATATATTCTTATTTGATAATAAAGATGTAGATGACTGTCTGCACGCATGCGTAGAAAAC-AAAAA
*
14950328 AATTATAAAATAATTTTAAAGCAAGGTTTTAATTGCAAGTGTACAATGTCGAGATGTAACATTTA
161 AATTATAAAATAATTTTAAAGCAAGGTTTTAATTGCAAGTGTACAATGTCGAGATGTAATATTTA
* * *
14950393 TAGTATTACAAGGGAACATTGAGTATTCCAAGGATCAAGGCCAAGGAATTGGTAAATTGGTAAAT
226 TAGTGTTACAAGGGAACATGGAGTATTCCAAGGATCAAGGCCAAGGAATTGCTAAATTGGTAAAT
*
14950458 GTGATTATCAAGTCAAATATTAATTAAGCAATTACTAATCTAATCAATTCGAGAATTATTAGTGC
291 GTGATTATCAAGTCAAATATTAATTAAGCAATTACTAATCTAATCAGTTCGAGAATTATTAGTGC
* *
14950523 AACCGAATAATAATAATGAAGAAATTAAATTTAAGTTATCAACAAAACGAAATAACCTAATCACT
356 AACCGAATAATAATAATGAAGAAATTACATTTAAGTTATCAACAAAACTAAATAACCTAATCACT
* ** *
14950588 TCCCCCTTGCCTTAGAACTATGCAAATTATTAAAGCAATGGTCAATTGGTCTATTAATTTCTCAC
421 TCCCCCTTGCCTTAGAACTATGCAAATTATCAAAGCAATGGTCAATTAATCTATTAATTGCTCAC
* *
14950653 TGAGTGAATAAACATGCTTTGAAGATATCACTCACCACTCGTAACTCGGAATCTCCTCTCAGTCT
486 TGAGTTAATAAACATGCTTCGAAGATATCACTCACCACTCGTAACTCGGAATCTCCTCTCAGTCT
14950718 CATCCTAGCTAGAAATTACCACCTAAGATCTCCTCTCGATCTCACTTAGGCACATAGATCTCTTT
551 CATCCTAGCTAGAAATTACCACCTAAGATCTCCTCTCGATCTCACTTAGGCACATAGATCTCTTT
14950783 TTGGTCTCACTACTTAACGCATTCATAATAAAGTTATGCACGATAGGATATCCTTTCGGTCTCAC
616 TTGGTCTCACTACTTAACGCATTCATAATAAAGTTATGCACGATAGGATATCCTTTCGGTCTCAC
14950848 C
681 C
14950849 GAACTTGATT
Statistics
Matches: 4008, Mismatches: 205, Indels: 59
0.94 0.05 0.01
Matches are distributed among these distances:
705 1 0.00
706 672 0.17
707 135 0.03
708 537 0.13
709 1340 0.33
710 118 0.03
711 553 0.14
712 16 0.00
715 1 0.00
736 1 0.00
740 2 0.00
741 1 0.00
744 502 0.13
745 129 0.03
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.34
Consensus pattern (709 bp):
AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCCATTTTGTAATTT
GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGATGTAGATGA
CTGTCTGCACGCATGCGTAGAAAACAAAAAAATTATAAAATAATTTTAAAGCAAGGTTTTAATTG
CAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGGAT
CAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATTAC
TAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTACATTTAAG
TTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAAG
CAATGGTCAATTAATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTCAC
CACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCCTC
TCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCATTCATAATAAAGTT
ATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
Found at i:14950177 original size:34 final size:34
Alignment explanation
Indices: 14950133--14950201 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
14950123 AGTTGAATTG
* *
14950133 AAGTTCACATTACTTTCTTTTTGTAGATATATAT
1 AAGTTAACATTACTTTCTTTATGTAGATATATAT
*
14950167 AAGTTAACATTACTTTGTTTATGTAGATATATAT
1 AAGTTAACATTACTTTCTTTATGTAGATATATAT
14950201 A
1 A
14950202 CATATATATC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.33, C:0.09, G:0.10, T:0.48
Consensus pattern (34 bp):
AAGTTAACATTACTTTCTTTATGTAGATATATAT
Found at i:14959275 original size:14 final size:13
Alignment explanation
Indices: 14959252--14959313 Score: 56
Period size: 14 Copynumber: 4.8 Consensus size: 13
14959242 GGGAAAGCAT
14959252 AAAAGAAAAAGGA
1 AAAAGAAAAAGGA
14959265 AAAAGAAAAA--A
1 AAAAGAAAAAGGA
* *
14959276 AACAGAAAAAAAGA
1 AAAAG-AAAAAGGA
*
14959290 AATAGAAAAAGTGA
1 AAAAGAAAAAG-GA
*
14959304 AATAGAAAAA
1 AAAAGAAAAA
14959314 TAAATTATCA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
11 5 0.12
12 5 0.12
13 15 0.36
14 17 0.40
ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05
Consensus pattern (13 bp):
AAAAGAAAAAGGA
Found at i:14960396 original size:3 final size:3
Alignment explanation
Indices: 14960388--14960445 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
14960378 CATGAGACAA
14960388 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14960436 AAT AAT AAT A
1 AAT AAT AAT A
14960446 TAAATTAGTA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14960948 original size:11 final size:11
Alignment explanation
Indices: 14960900--14960956 Score: 51
Period size: 11 Copynumber: 5.0 Consensus size: 11
14960890 ATATACATGC
14960900 ATAAAAAATAT
1 ATAAAAAATAT
* * *
14960911 GTATAAATTAT
1 ATAAAAAATAT
* *
14960922 ATGAAGATAGTAT
1 AT-AA-AAAATAT
14960935 ATAAAAAATAT
1 ATAAAAAATAT
14960946 ATAAAAAATAT
1 ATAAAAAATAT
14960957 TGGTAAAAAT
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
11 25 0.71
12 3 0.09
13 7 0.20
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (11 bp):
ATAAAAAATAT
Found at i:14961060 original size:22 final size:24
Alignment explanation
Indices: 14961034--14961079 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
14961024 GTTAATTGAT
14961034 AAAAA-AAACTAATAATAATAATG
1 AAAAAGAAACTAATAATAATAATG
*
14961057 AAAAATGAAATTAATAATAATAA
1 AAAAA-GAAACTAATAATAATAA
14961080 ACCAATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
25 15 0.75
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.24
Consensus pattern (24 bp):
AAAAAGAAACTAATAATAATAATG
Found at i:14962616 original size:50 final size:50
Alignment explanation
Indices: 14962508--14963497 Score: 710
Period size: 50 Copynumber: 19.8 Consensus size: 50
14962498 AACTTTTGGA
* * * * ** *
14962508 AAGTAAGATTCGCCATTGTAGCTTCAATCTTTTTAACTACAATGTCGGGG
1 AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
* * * ** *
14962558 AAGCAAGATTTGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
1 AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
* * * * * ** * * *
14962608 ACGTAAGATTCGTCGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGG
1 AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
* * * * ** * *
14962658 AAGCATGATTCGCCATTGTGGCTTCAATCTGTTCCACTACACCGCCTGAG
1 AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
* * * * * ** *
14962708 AAATAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTACAATGTC-GGA
1 AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
* *****
14962757 AAGTAAGATTCGCCGCTGTGGCTTTAATCTGTTCCACTACTCCACCTGGG
1 AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
* * * * ** * **
14962807 AAGTAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCAAGG
1 AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
* * *** *
14962857 AAGCATGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACACCATCTAGG
1 AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
* * * * * ** *
14962907 AAGGAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTC-GGG
1 AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
* * ** ** *
14962956 AAAGCATGATTCGCCGCCGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
1 -AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
* * * ** * *
14963007 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGG
1 AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
* ** *
14963057 AAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
1 AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
** * * ** * *
14963107 AAGTAAGATTCGCTATTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGG
1 AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
* * * * ** *
14963157 AAGCATGATTCGTCGTTGTGGCTTTAATATGTTCCACTACACCGCCTGGG
1 AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
* * * ** * *
14963207 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGG
1 AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
* * * *
14963257 AAGCATGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACACTGCCTGGG
1 AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
* * ** * ** * *
14963307 AAGTAAGATTCACTGTTGTAACTTTAATCTTTTTAACTGCAATGTCGGGG
1 AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
* * * *
14963357 AAGCATGATTCGCTGTTGTGGCTTTAATCTGTTCCACTACACTG-CTTGGG
1 AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTC-TGGG
** * * ** *
14963407 AAGTAAGATTCGCTATTGTAGCTTTAATCTTTTTAACTGCAATGTC-GGG
1 AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
* * *
14963456 AAAGCAAGATTTGCAGTTGTGGCTTTAATCTGTTCCACTACA
1 -AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACA
14963498 TCACCTGGGA
Statistics
Matches: 687, Mismatches: 247, Indels: 12
0.73 0.26 0.01
Matches are distributed among these distances:
49 40 0.06
50 643 0.94
51 4 0.01
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (50 bp):
AAGTAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACAATGTCTGGG
Found at i:14962687 original size:100 final size:100
Alignment explanation
Indices: 14962508--14963515 Score: 1518
Period size: 100 Copynumber: 10.1 Consensus size: 100
14962498 AACTTTTGGA
** * * * *
14962508 AAGTAAGATTCGCCATTGTAGCTTCAATCTTTTTAACTACAATGTCGGGGAAGCAAGATTTGCCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
*
14962573 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
* * * *
14962608 ACGTAAGATTCG-TCGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGCATGATTCGCC
1 AAGTAAGATTCGCT-GTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCC
* * *
14962672 ATTGTGGCTTCAATCTGTTCCACTACACCGCCTGAG
65 GTTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
* * * * * *
14962708 AAATAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTACAATGTC-GGAAAGTAAGATTCGCCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
* * *
14962772 CTGTGGCTTTAATCTGTTCCACTACTCCACCTGGG
66 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
* **
14962807 AAGTAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCAAGGAAGCATGATTCGCCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
** *
14962872 TTGTGGCTTTAATCTGTTCCACTACACCATCTAGG
66 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
* * *
14962907 AAGGAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGAAAGCATGATTCGCCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
**
14962972 CCGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
*
14963007 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
14963072 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
* *
14963107 AAGTAAGATTCGCTATTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGTCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
*
14963172 TTGTGGCTTTAATATGTTCCACTACACCGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
14963207 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
*
14963272 TTGTGGCTTTAATCTGTTCCACTACACTGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
* * *
14963307 AAGTAAGATTCACTGTTGTAACTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCTG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
* *
14963372 TTGTGGCTTTAATCTGTTCCACTACACTGCTTGGG
66 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
* * * * *
14963407 AAGTAAGATTCGCTATTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGAAAGCAAGATTTGCAG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
* *
14963472 TTGTGGCTTTAATCTGTTCCACTACATCACCTGGG
66 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
14963507 -AGATAAGAT
1 AAG-TAAGAT
14963516 CTGTAATTTT
Statistics
Matches: 829, Mismatches: 75, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
99 90 0.11
100 738 0.89
101 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (100 bp):
AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
Found at i:14963554 original size:44 final size:44
Alignment explanation
Indices: 14963504--14963599 Score: 113
Period size: 44 Copynumber: 2.2 Consensus size: 44
14963494 TACATCACCT
** * * *
14963504 GGGAGATAAGATCTGTAA-TTTTCAACCTATTCCACTGCTGATCA
1 GGGAGATAAGATCTACAAGCTTT-AACCTAATCCACTGCTGACCA
* *
14963548 GGGAGATAGGATTTACAAGCTTTAACCTAATCCACTGCTGACCA
1 GGGAGATAAGATCTACAAGCTTTAACCTAATCCACTGCTGACCA
14963592 GGGAGATA
1 GGGAGATA
14963600 GGACTAGTGG
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 41 0.93
45 3 0.07
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (44 bp):
GGGAGATAAGATCTACAAGCTTTAACCTAATCCACTGCTGACCA
Found at i:14963753 original size:44 final size:44
Alignment explanation
Indices: 14963705--14963911 Score: 254
Period size: 44 Copynumber: 4.7 Consensus size: 44
14963695 GATTTTTAAT
*
14963705 CTATTCCACTGCTGCCCAGGGAGATAGAATTCACCATCTTCAAC
1 CTATTCCACTGCTGCCCAGGGAGATAGAATTCACAATCTTCAAC
* * * * *
14963749 CTATTCCACTGCTGACCAGGGAAATAGGACTCACAATCTTCAAT
1 CTATTCCACTGCTGCCCAGGGAGATAGAATTCACAATCTTCAAC
* * * *
14963793 CTATTCCGCTACTGTCCC-GGGAGATATAATTCACCATCTTCAAC
1 CTATTCCACTGCTG-CCCAGGGAGATAGAATTCACAATCTTCAAC
* * * * *
14963837 CTATTCCACTGCTGACCAGGGAAATAGGACTCACAATCTTCAAT
1 CTATTCCACTGCTGCCCAGGGAGATAGAATTCACAATCTTCAAC
*
14963881 CTATTCCACAGCTGCCCAGGGAGATAGAATT
1 CTATTCCACTGCTGCCCAGGGAGATAGAATT
14963912 GGTATCTTCG
Statistics
Matches: 132, Mismatches: 29, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
43 2 0.02
44 128 0.97
45 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (44 bp):
CTATTCCACTGCTGCCCAGGGAGATAGAATTCACAATCTTCAAC
Found at i:14963757 original size:88 final size:88
Alignment explanation
Indices: 14963702--14963911 Score: 368
Period size: 88 Copynumber: 2.4 Consensus size: 88
14963692 TGTGATTTTT
14963702 AATCTATTCCACTGCTGCCCAGGGAGATAGAATTCACCATCTTCAACCTATTCCACTGCTGACCA
1 AATCTATTCCACTGCTGCCCAGGGAGATAGAATTCACCATCTTCAACCTATTCCACTGCTGACCA
14963767 GGGAAATAGGACTCACAATCTTC
66 GGGAAATAGGACTCACAATCTTC
* * *
14963790 AATCTATTCCGCTACTGTCCC-GGGAGATATAATTCACCATCTTCAACCTATTCCACTGCTGACC
1 AATCTATTCCACTGCTG-CCCAGGGAGATAGAATTCACCATCTTCAACCTATTCCACTGCTGACC
14963854 AGGGAAATAGGACTCACAATCTTC
65 AGGGAAATAGGACTCACAATCTTC
*
14963878 AATCTATTCCACAGCTGCCCAGGGAGATAGAATT
1 AATCTATTCCACTGCTGCCCAGGGAGATAGAATT
14963912 GGTATCTTCG
Statistics
Matches: 113, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
87 3 0.03
88 107 0.95
89 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.26
Consensus pattern (88 bp):
AATCTATTCCACTGCTGCCCAGGGAGATAGAATTCACCATCTTCAACCTATTCCACTGCTGACCA
GGGAAATAGGACTCACAATCTTC
Found at i:14965410 original size:48 final size:49
Alignment explanation
Indices: 14965331--14965423 Score: 125
Period size: 48 Copynumber: 1.9 Consensus size: 49
14965321 TTTTGATTTA
* * *
14965331 TTTTTATTTTTTGGACTCAAAGCGCCCTTTGCAGGTTTTCACCTTGGTC
1 TTTTTATTTTTAGGAATCAAAGCACCCTTTGCAGGTTTTCACCTTGGTC
* * *
14965380 TTTTT-TTTTTAGGAATCAAATCACCTTTTGCGGGTTTTCACCTT
1 TTTTTATTTTTAGGAATCAAAGCACCCTTTGCAGGTTTTCACCTT
14965424 AGTCCCTTCT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
48 33 0.87
49 5 0.13
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.47
Consensus pattern (49 bp):
TTTTTATTTTTAGGAATCAAAGCACCCTTTGCAGGTTTTCACCTTGGTC
Found at i:14966291 original size:12 final size:12
Alignment explanation
Indices: 14966271--14966320 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
14966261 TGGCCTCTCC
*
14966271 TTTTC-TTTTCA
1 TTTTCATTTTGA
*
14966282 TTTTCATTTT-T
1 TTTTCATTTTGA
14966293 TTTTCATTTTGA
1 TTTTCATTTTGA
*
14966305 TTTTGATTTTGA
1 TTTTCATTTTGA
14966317 TTTT
1 TTTT
14966321 TTTCTTTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
11 15 0.44
12 19 0.56
ACGTcount: A:0.12, C:0.08, G:0.06, T:0.74
Consensus pattern (12 bp):
TTTTCATTTTGA
Found at i:14966291 original size:17 final size:17
Alignment explanation
Indices: 14966271--14966308 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
14966261 TGGCCTCTCC
14966271 TTTTCTTTTCATTTTCA
1 TTTTCTTTTCATTTTCA
* *
14966288 TTTTTTTTTCATTTTGA
1 TTTTCTTTTCATTTTCA
14966305 TTTT
1 TTTT
14966309 GATTTTGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.11, C:0.11, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTCTTTTCATTTTCA
Found at i:14966338 original size:6 final size:6
Alignment explanation
Indices: 14966271--14966320 Score: 50
Period size: 6 Copynumber: 8.7 Consensus size: 6
14966261 TGGCCTCTCC
* * * *
14966271 TTTTC- TTTTCA TTTTCA TTTT-T TTTTCA TTTTGA TTTTGA TTTTGA
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA
14966317 TTTT
1 TTTT
14966321 TTTCTTTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
5 9 0.22
6 31 0.77
ACGTcount: A:0.12, C:0.08, G:0.06, T:0.74
Consensus pattern (6 bp):
TTTTCA
Found at i:14966339 original size:25 final size:25
Alignment explanation
Indices: 14966311--14966374 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
14966301 TTGATTTTGA
14966311 TTTTGATTTTTTTCTTTTTTTTCATT
1 TTTTGATTTTTTT-TTTTTTTTCATT
* *
14966337 TTTTGATTTTGTTTTTTTTTTGATT
1 TTTTGATTTTTTTTTTTTTTTCATT
**
14966362 GATTGATTTTTTT
1 TTTTGATTTTTTT
14966375 ATATTTCGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
25 21 0.64
26 12 0.36
ACGTcount: A:0.09, C:0.03, G:0.09, T:0.78
Consensus pattern (25 bp):
TTTTGATTTTTTTTTTTTTTTCATT
Found at i:14966340 original size:17 final size:17
Alignment explanation
Indices: 14966271--14966338 Score: 57
Period size: 18 Copynumber: 3.9 Consensus size: 17
14966261 TGGCCTCTCC
*
14966271 TTTTCTTTTCATTTTCA-
1 TTTTTTTTTCATTTT-AT
14966288 TTTTTTTTTCATTTTGAT
1 TTTTTTTTTCATTTT-AT
** * *
14966306 TTTGATTTTGATTTTTT
1 TTTTTTTTTCATTTTAT
14966323 TCTTTTTTTTCATTTT
1 T-TTTTTTTTCATTTT
14966339 TTGATTTTGT
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
17 17 0.43
18 23 0.57
ACGTcount: A:0.10, C:0.09, G:0.04, T:0.76
Consensus pattern (17 bp):
TTTTTTTTTCATTTTAT
Found at i:14966346 original size:17 final size:17
Alignment explanation
Indices: 14966299--14966361 Score: 54
Period size: 18 Copynumber: 3.5 Consensus size: 17
14966289 TTTTTTTTCA
14966299 TTTTGATTTTGATTTTGATT
1 TTTTGATTTTG--TTT-ATT
** *
14966319 TTTTTCTTTTTTTTCATT
1 TTTTGATTTTGTTT-ATT
*
14966337 TTTTGATTTTGTTTTTT
1 TTTTGATTTTGTTTATT
14966354 TTTTGATT
1 TTTTGATT
14966362 GATTGATTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
17 10 0.29
18 17 0.49
20 8 0.23
ACGTcount: A:0.10, C:0.03, G:0.10, T:0.78
Consensus pattern (17 bp):
TTTTGATTTTGTTTATT
Found at i:14967173 original size:25 final size:25
Alignment explanation
Indices: 14967123--14967181 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
14967113 AAGAAAATCC
* *
14967123 AAAAGAATGAAAGAATAATTATTCA
1 AAAAGAATAAAAGAATAATTACTCA
*
14967148 AAAAGAATAAAAGAAT-ATTGGCTCA
1 AAAAGAATAAAAGAATAATT-ACTCA
14967173 AAAATGAAT
1 AAAA-GAAT
14967182 GCAAAGATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
24 3 0.10
25 22 0.76
26 4 0.14
ACGTcount: A:0.59, C:0.05, G:0.14, T:0.22
Consensus pattern (25 bp):
AAAAGAATAAAAGAATAATTACTCA
Done.