Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55868233
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 983842 characters in sequence are not A, C, G, or T
File 58 of 187
Found at i:17023942 original size:16 final size:16
Alignment explanation
Indices: 17023923--17023953 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17023913 AAATTGTTAT
*
17023923 CTTTTTAATTTAATCC
1 CTTTATAATTTAATCC
17023939 CTTTATAATTTAATC
1 CTTTATAATTTAATC
17023954 ACAATTATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.00, T:0.55
Consensus pattern (16 bp):
CTTTATAATTTAATCC
Found at i:17024200 original size:21 final size:21
Alignment explanation
Indices: 17024154--17024202 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
17024144 AATTTTTGCT
*
17024154 TAATTTTAAAAATTAATTTTA
1 TAATTTTAAAAATTAATATTA
17024175 TAATTTTAGAAAA-TAA-ATTA
1 TAATTTTA-AAAATTAATATTA
17024195 TGAATTTT
1 T-AATTTT
17024203 TAGATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 4 0.16
21 17 0.68
22 4 0.16
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (21 bp):
TAATTTTAAAAATTAATATTA
Found at i:17026920 original size:25 final size:25
Alignment explanation
Indices: 17026873--17026921 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
17026863 AAAAAATCTA
*
17026873 AAAATTTTAAAGAAATTATAAAAAT
1 AAAATTTTAAAGAAATTACAAAAAT
*
17026898 AAAATTCTTAAA-AAATTGCAAAAA
1 AAAATT-TTAAAGAAATTACAAAAA
17026922 GATCTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (25 bp):
AAAATTTTAAAGAAATTACAAAAAT
Found at i:17027460 original size:6 final size:6
Alignment explanation
Indices: 17027449--17027481 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
17027439 AAAAAATATA
17027449 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA
17027482 TAAAAGTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:17027547 original size:10 final size:10
Alignment explanation
Indices: 17027510--17027676 Score: 65
Period size: 10 Copynumber: 17.6 Consensus size: 10
17027500 ATAAATTTTA
17027510 ATAAAAAA-T
1 ATAAAAAATT
17027519 AT-AAAAATCT
1 ATAAAAAAT-T
*
17027529 TTAAAAAATT
1 ATAAAAAATT
17027539 ATAAAAAATT
1 ATAAAAAATT
* **
17027549 GTAAAATTTT
1 ATAAAAAATT
17027559 AT-AAAAA-T
1 ATAAAAAATT
*
17027567 A-AAAGAA-T
1 ATAAAAAATT
*
17027575 ATAAAAGA-T
1 ATAAAAAATT
*
17027584 AT-AGAAATAT
1 ATAAAAAAT-T
*
17027594 AGAAAAAATT
1 ATAAAAAATT
17027604 AT--AAAATT
1 ATAAAAAATT
* * * *
17027612 TTATAAAGTC
1 ATAAAAAATT
17027622 ATAAGAAAATT
1 ATAA-AAAATT
17027633 ATAAAAAATGT
1 ATAAAAAAT-T
*
17027644 A-AAGAAA-T
1 ATAAAAAATT
17027652 AT--AAAATT
1 ATAAAAAATT
*
17027660 CATAAAAATTT
1 -ATAAAAAATT
17027671 ATAAAA
1 ATAAAA
17027677 TTTATCGTAT
Statistics
Matches: 115, Mismatches: 26, Indels: 33
0.66 0.15 0.19
Matches are distributed among these distances:
7 3 0.03
8 26 0.23
9 14 0.12
10 46 0.40
11 26 0.23
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.29
Consensus pattern (10 bp):
ATAAAAAATT
Found at i:17027876 original size:9 final size:9
Alignment explanation
Indices: 17027864--17027950 Score: 57
Period size: 10 Copynumber: 8.7 Consensus size: 9
17027854 TTTTTGATGC
17027864 TTTTATAAT
1 TTTTATAAT
*
17027873 TTTTATAAAA
1 TTTTAT-AAT
*
17027883 TTTTACAAT
1 TTTTATAAT
17027892 ATTTTATAATTT
1 -TTTTATAA--T
17027904 TTTTATAATT
1 TTTTATAA-T
17027914 TTTTAAAATAAT
1 TTTT---ATAAT
*
17027926 TTTTATAAA
1 TTTTATAAT
*
17027935 TTTTATTGAT
1 TTTTA-TAAT
17027945 TTTTAT
1 TTTTAT
17027951 TTTTATACTT
Statistics
Matches: 63, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
9 18 0.29
10 27 0.43
11 8 0.13
12 6 0.10
13 4 0.06
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (9 bp):
TTTTATAAT
Found at i:17027907 original size:21 final size:22
Alignment explanation
Indices: 17027864--17027940 Score: 83
Period size: 21 Copynumber: 3.7 Consensus size: 22
17027854 TTTTTGATGC
17027864 TTTTATAAT-TTTTATAA-AA-
1 TTTTATAATATTTTATAATAAT
* *
17027883 TTTTACAATATTTTATAAT-TT
1 TTTTATAATATTTTATAATAAT
* *
17027904 TTTTATAATTTTTTAAAATAAT
1 TTTTATAATATTTTATAATAAT
17027926 TTTTATAA-ATTTTAT
1 TTTTATAATATTTTAT
17027941 TGATTTTTAT
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
19 8 0.17
20 8 0.17
21 21 0.46
22 9 0.20
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (22 bp):
TTTTATAATATTTTATAATAAT
Found at i:17027910 original size:31 final size:32
Alignment explanation
Indices: 17027864--17027938 Score: 84
Period size: 31 Copynumber: 2.4 Consensus size: 32
17027854 TTTTTGATGC
*
17027864 TTTTATAA-TTTTTATAAAATTTTACAAT-A-
1 TTTTATAATTTTTTATAAAATTTTAAAATAAT
**
17027893 TTTTATAATTTTTTTATAATTTTTTAAAATAAT
1 TTTTATAA-TTTTTTATAAAATTTTAAAATAAT
*
17027926 TTTTATAAATTTT
1 TTTTATAATTTTT
17027939 ATTGATTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
29 8 0.21
31 17 0.45
32 5 0.13
33 8 0.21
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.61
Consensus pattern (32 bp):
TTTTATAATTTTTTATAAAATTTTAAAATAAT
Found at i:17028251 original size:92 final size:91
Alignment explanation
Indices: 17028066--17028338 Score: 348
Period size: 92 Copynumber: 3.1 Consensus size: 91
17028056 GTTAAAGAGT
* * * *
17028066 CTTTTTGATGCATTTT-ATAGTTCAAGTACCTAATTGAGTG-AAAAAAAGATTAGGGGCTTAATT
1 CTTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAA-ATAAGGGGCTTAATT
* * *
17028129 G-ATTTTTTTTGAAAAAGTTTGAGGGT
65 GCTTTTTTTTTGAAAAAGTTTGAAGGC
* *
17028155 CTTTTTAATGCATTTTGAAAATTCAAGTACCCAATTGAGTGCAAAAAAAATAGAGGGGTTTAATT
1 CTTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAATA-AGGGGCTTAATT
17028220 GCTTTTTTTTTGAAAAAGTTTGAAGGC
65 GCTTTTTTTTTGAAAAAGTTTGAAGGC
* * *
17028247 CTTTTTGATGTATTTTGAAAGTTCAAGTACCCAATTGAGTGC--AAAAAA-AAGGAGCTTAATTG
1 CTTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAATAAGGGGCTTAATTG
*
17028309 CTTTTTTTTT--AAAAGTTTG-AGGG
66 CTTTTTTTTTGAAAAAGTTTGAAGGC
17028332 CTTTTTA
1 CTTTTTA
17028339 CACCATTGAG
Statistics
Matches: 164, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
85 9 0.05
86 9 0.05
88 21 0.13
89 16 0.10
90 29 0.18
91 19 0.12
92 61 0.37
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (91 bp):
CTTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAATAAGGGGCTTAATTG
CTTTTTTTTTGAAAAAGTTTGAAGGC
Found at i:17031918 original size:17 final size:18
Alignment explanation
Indices: 17031896--17031937 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
17031886 AGCAGCCCAT
17031896 ACATTTCACA-AATTTAC
1 ACATTTCACACAATTTAC
* *
17031913 ACATTTAACACAATTTTC
1 ACATTTCACACAATTTAC
17031931 ACATTTC
1 ACATTTC
17031938 TCAATTTAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (18 bp):
ACATTTCACACAATTTAC
Found at i:17041304 original size:30 final size:31
Alignment explanation
Indices: 17041257--17041314 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
17041247 ATAATTTTAA
17041257 TAAATGAAAAAAATATAAA-ATTATTAAATTT
1 TAAATGAAAAAAATATAAATATT-TTAAATTT
*
17041288 TAAAT-AAAAGAATATAAATATTTTAAA
1 TAAATGAAAAAAATATAAATATTTTAAA
17041315 AAAAATTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 17 0.68
31 8 0.32
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (31 bp):
TAAATGAAAAAAATATAAATATTTTAAATTT
Found at i:17041327 original size:21 final size:23
Alignment explanation
Indices: 17041284--17041328 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
17041274 AAATTATTAA
*
17041284 ATTTTAAATAAAAGAATATAAAT
1 ATTTTAAATAAAAGAATAAAAAT
*
17041307 ATTTTAAA-AAAA-ATTAAAAAT
1 ATTTTAAATAAAAGAATAAAAAT
17041328 A
1 A
17041329 ATATTGACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 4 0.20
23 8 0.40
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
ATTTTAAATAAAAGAATAAAAAT
Found at i:17045100 original size:20 final size:21
Alignment explanation
Indices: 17045060--17045100 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
17045050 AATTTTCACA
**
17045060 AAAAAGTATCGATATCTTTAC
1 AAAAAGTATCGATATAATTAC
17045081 AAAAAGTATCGATA-AATTAC
1 AAAAAGTATCGATATAATTAC
17045101 CTTTGGTATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.49, C:0.12, G:0.10, T:0.29
Consensus pattern (21 bp):
AAAAAGTATCGATATAATTAC
Found at i:17059480 original size:19 final size:17
Alignment explanation
Indices: 17059444--17059484 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 17
17059434 TTTTTTGAGC
17059444 TTTTTGCTTCTTCTTTT
1 TTTTTGCTTCTTCTTTT
*
17059461 TTTTGTGCTTTTTACTTTT
1 TTTT-TGCTTCTT-CTTTT
17059480 TTTTT
1 TTTTT
17059485 CTGTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 4 0.19
18 8 0.38
19 9 0.43
ACGTcount: A:0.02, C:0.12, G:0.07, T:0.78
Consensus pattern (17 bp):
TTTTTGCTTCTTCTTTT
Found at i:17062418 original size:63 final size:63
Alignment explanation
Indices: 17062319--17062453 Score: 263
Period size: 63 Copynumber: 2.2 Consensus size: 63
17062309 TATTTTTCGA
17062319 TGCCTTAAAAACATTCTGGAAGAAAAAGCGACACTAATTTAAGTGCATTTAAAATAAAAAAAT
1 TGCCTTAAAAACATTCTGGAAGAAAAAGCGACACTAATTTAAGTGCATTTAAAATAAAAAAAT
17062382 TGCCTTAAAAACATTCTGGAAGAAAAAGCGACACTAATTTAAGTGCATTTAAAATAAAAAAAT
1 TGCCTTAAAAACATTCTGGAAGAAAAAGCGACACTAATTTAAGTGCATTTAAAATAAAAAAAT
17062445 TGCC-TAAAA
1 TGCCTTAAAA
17062454 CCGCACGAAT
Statistics
Matches: 72, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
62 5 0.07
63 67 0.93
ACGTcount: A:0.49, C:0.13, G:0.13, T:0.25
Consensus pattern (63 bp):
TGCCTTAAAAACATTCTGGAAGAAAAAGCGACACTAATTTAAGTGCATTTAAAATAAAAAAAT
Found at i:17062525 original size:17 final size:17
Alignment explanation
Indices: 17062503--17062537 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
17062493 CTTGAACGTG
17062503 AATCCATTATTTGTTCA
1 AATCCATTATTTGTTCA
*
17062520 AATCCATTGTTTGTTCA
1 AATCCATTATTTGTTCA
17062537 A
1 A
17062538 CGGTTACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.17, G:0.09, T:0.46
Consensus pattern (17 bp):
AATCCATTATTTGTTCA
Found at i:17066727 original size:27 final size:27
Alignment explanation
Indices: 17066669--17066721 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
17066659 TAGTAATAAT
*
17066669 AATAACATAAACATTTTTTTTATAGAA
1 AATAACATAAACATTTATTTTATAGAA
*
17066696 AATAACATAAACATTTATTTTCTAGA
1 AATAACATAAACATTTATTTTATAGA
17066722 TTATAAGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (27 bp):
AATAACATAAACATTTATTTTATAGAA
Found at i:17066948 original size:17 final size:19
Alignment explanation
Indices: 17066926--17066963 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
17066916 ATAAACTTAA
17066926 AATTGTATTA-T-ATTTGT
1 AATTGTATTAGTAATTTGT
*
17066943 AATTGTGTTAGTAATTTGT
1 AATTGTATTAGTAATTTGT
17066962 AA
1 AA
17066964 AAATTGAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 9 0.50
18 1 0.06
19 8 0.44
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.53
Consensus pattern (19 bp):
AATTGTATTAGTAATTTGT
Found at i:17068631 original size:20 final size:23
Alignment explanation
Indices: 17068579--17068641 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 23
17068569 CAAATTTTGA
*
17068579 AAATAAAATCCATAAATATTAAT
1 AAATATAATCCATAAATATTAAT
*
17068602 AAATATAATCCATTAAT-TTAA-
1 AAATATAATCCATAAATATTAAT
*
17068623 AAA-ATAATCCA-AAACATTA
1 AAATATAATCCATAAATATTA
17068642 CATTTAAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
19 2 0.06
20 11 0.31
21 3 0.09
22 4 0.11
23 15 0.43
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (23 bp):
AAATATAATCCATAAATATTAAT
Found at i:17074070 original size:22 final size:22
Alignment explanation
Indices: 17074045--17074086 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
17074035 GGCTGTGTGA
17074045 CAGAGCACGGACCATGTGGCTC
1 CAGAGCACGGACCATGTGGCTC
* *
17074067 CAGAGCATGGACCGTGTGGC
1 CAGAGCACGGACCATGTGGC
17074087 CATCCTACAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.29, G:0.36, T:0.14
Consensus pattern (22 bp):
CAGAGCACGGACCATGTGGCTC
Found at i:17077309 original size:15 final size:15
Alignment explanation
Indices: 17077289--17077321 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
17077279 ATAAAAATTT
17077289 AATTATATACTGGTG
1 AATTATATACTGGTG
*
17077304 AATTATATATTGGTG
1 AATTATATACTGGTG
17077319 AAT
1 AAT
17077322 ATAAGGCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.36, C:0.03, G:0.18, T:0.42
Consensus pattern (15 bp):
AATTATATACTGGTG
Found at i:17081738 original size:21 final size:22
Alignment explanation
Indices: 17081707--17081748 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
17081697 ACCTACAAGG
17081707 AAACAAGCATAAAGAAAGAAAC
1 AAACAAGCATAAAGAAAGAAAC
**
17081729 AAAC-AGCATATGGAAAGAAA
1 AAACAAGCATAAAGAAAGAAA
17081749 ATCATGGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.64, C:0.12, G:0.17, T:0.07
Consensus pattern (22 bp):
AAACAAGCATAAAGAAAGAAAC
Found at i:17082861 original size:17 final size:15
Alignment explanation
Indices: 17082827--17082867 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 15
17082817 CATACGCATA
17082827 TTTTTTTAATGTAAT
1 TTTTTTTAATGTAAT
*
17082842 TTTTTTTATATGTAGCT
1 TTTTTTTA-ATGTA-AT
17082859 TTTTTTTAA
1 TTTTTTTAA
17082868 ATAATCTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 8 0.35
16 6 0.26
17 9 0.39
ACGTcount: A:0.22, C:0.02, G:0.07, T:0.68
Consensus pattern (15 bp):
TTTTTTTAATGTAAT
Found at i:17083702 original size:98 final size:98
Alignment explanation
Indices: 17083577--17083773 Score: 358
Period size: 98 Copynumber: 2.0 Consensus size: 98
17083567 TTAAAAATCA
*
17083577 TAAAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
17083642 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
* *
17083675 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGGATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
17083740 TTAAATCTTGGATGAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
17083773 T
1 T
17083774 TTTATTGTAT
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:17084773 original size:20 final size:20
Alignment explanation
Indices: 17084748--17084787 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
17084738 AATATTTTCC
*
17084748 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
17084768 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
17084788 TCATTTTACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:17085130 original size:31 final size:32
Alignment explanation
Indices: 17085068--17085130 Score: 83
Period size: 35 Copynumber: 1.9 Consensus size: 32
17085058 AACTCTTTTT
17085068 TCTTTTTGGTTACATGAACCAATTAATTAACTCTC
1 TCTTTTTGGTTACATGAACC-A--AATTAACTCTC
*
17085103 TCTTTTTTGTTACATGAACC-AATTAACT
1 TCTTTTTGGTTACATGAACCAAATTAACT
17085131 TTGATTCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 8 0.30
35 19 0.70
ACGTcount: A:0.29, C:0.19, G:0.08, T:0.44
Consensus pattern (32 bp):
TCTTTTTGGTTACATGAACCAAATTAACTCTC
Found at i:17085215 original size:19 final size:22
Alignment explanation
Indices: 17085193--17085244 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
17085183 ATAAAGTACG
17085193 AAATATTC-TC-TAAATTAAT-
1 AAATATTCATCATAAATTAATA
17085212 AAATATTCATCAATAAATTAATA
1 AAATATTCATC-ATAAATTAATA
17085235 AAATATTCAT
1 AAATATTCAT
17085245 TTATCGATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.28
20 2 0.07
22 9 0.31
23 10 0.34
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (22 bp):
AAATATTCATCATAAATTAATA
Found at i:17085270 original size:17 final size:17
Alignment explanation
Indices: 17085248--17085280 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
17085238 TATTCATTTA
17085248 TCGATAAAATAATAATC
1 TCGATAAAATAATAATC
17085265 TCGATAAAATAATAAT
1 TCGATAAAATAATAAT
17085281 TTTTCGGATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.09, G:0.06, T:0.30
Consensus pattern (17 bp):
TCGATAAAATAATAATC
Found at i:17088822 original size:152 final size:152
Alignment explanation
Indices: 17088546--17088847 Score: 550
Period size: 152 Copynumber: 2.0 Consensus size: 152
17088536 GCAATCGTAG
17088546 TTTCGGTAAGTTCGTAGACTTGAACTTAACTTTTCTATTAATTATTTAATTAATCAATGTTATTT
1 TTTCGGTAAGTTCGTAGACTTGAACTTAACTTTTCTATTAATTATTTAATTAATCAATGTTATTT
*
17088611 TAATACTTGAAATACAATTTTATGTGTATTATCGAATAAAGATGTTAAGTGATGAATGAGGAAAT
66 TAATACTTGAAATAAAATTTTATGTGTATTATCGAATAAAGATGTTAAGTGATGAATGAGGAAAT
*
17088676 TGTGAAAGTAAATAAATACAAT
131 CGTGAAAGTAAATAAATACAAT
*
17088698 TTTCGGTAAGTTCGTAGATTTGAACTTAACTTTTCTATTAATTATTTAATTAATCAATGTTATTT
1 TTTCGGTAAGTTCGTAGACTTGAACTTAACTTTTCTATTAATTATTTAATTAATCAATGTTATTT
*
17088763 TAATACTTGAAATAAAATTTTATGTGTATTATCGAATAAAGATGTTGAGTGATGAATGAGGAAAT
66 TAATACTTGAAATAAAATTTTATGTGTATTATCGAATAAAGATGTTAAGTGATGAATGAGGAAAT
* *
17088828 CGTGGAAGTAAATAATTACA
131 CGTGAAAGTAAATAAATACA
17088848 CAAATGTCGG
Statistics
Matches: 144, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
152 144 1.00
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.40
Consensus pattern (152 bp):
TTTCGGTAAGTTCGTAGACTTGAACTTAACTTTTCTATTAATTATTTAATTAATCAATGTTATTT
TAATACTTGAAATAAAATTTTATGTGTATTATCGAATAAAGATGTTAAGTGATGAATGAGGAAAT
CGTGAAAGTAAATAAATACAAT
Found at i:17095729 original size:17 final size:18
Alignment explanation
Indices: 17095699--17095735 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
17095689 AAATTTAATT
*
17095699 TAATATTAATTTTTTAAA
1 TAATATTAATTTTTGAAA
17095717 TAATATT-ATTTTTGAAA
1 TAATATTAATTTTTGAAA
17095734 TA
1 TA
17095736 GTTGATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
TAATATTAATTTTTGAAA
Found at i:17104448 original size:43 final size:42
Alignment explanation
Indices: 17104382--17104539 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 42
17104372 AGCTCGTACA
* *
17104382 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAATCAAATAACG
1 ATGCC-ACTGTCCCAGACAGGGTCTTACACGTAATCAAAT-ACG
* * *
17104425 ATGCCACTGTCCCAGACAGGGTCTTACACATAGTCATATACG
1 ATGCCACTGTCCCAGACAGGGTCTTACACGTAATCAAATACG
* * *
17104467 ATGCCAATGTCCTAGACACGGTCTTACACGTAAATCTCAAAT-CG
1 ATGCCACTGTCCCAGACAGGGTCTTACACGT-AA--TCAAATACG
17104511 ATGCCA-TCGTCCCAGAC-GTGGTCTTACAC
1 ATGCCACT-GTCCCAGACAG-GGTCTTACAC
17104540 AAAATCACAT
Statistics
Matches: 96, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
42 32 0.33
43 33 0.34
44 26 0.27
45 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACAGGGTCTTACACGTAATCAAATACG
Found at i:17104534 original size:86 final size:84
Alignment explanation
Indices: 17104382--17104540 Score: 207
Period size: 86 Copynumber: 1.9 Consensus size: 84
17104372 AGCTCGTACA
* *
17104382 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATAACGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACACGGTCTTACACGTAATCAAAT-ACGATGCCACTGTCCCAGACAGGGT
17104447 CTTACACATAGTCATATACG
65 CTTACACATAGTCATATACG
* *
17104467 ATGCCAATGTCCTAGACACGGTCTTACACGTAAATCTCAAAT-CGATGCCA-TCGTCCCAGAC-G
1 ATGCCAACGTCCCAGACACGGTCTTACACGT-AA--TCAAATACGATGCCACT-GTCCCAGACAG
17104529 TGGTCTTACACA
62 -GGTCTTACACA
17104541 AAATCACATA
Statistics
Matches: 65, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
85 29 0.45
86 30 0.46
88 6 0.09
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (84 bp):
ATGCCAACGTCCCAGACACGGTCTTACACGTAATCAAATACGATGCCACTGTCCCAGACAGGGTC
TTACACATAGTCATATACG
Found at i:17108658 original size:9 final size:9
Alignment explanation
Indices: 17108644--17108702 Score: 57
Period size: 9 Copynumber: 6.4 Consensus size: 9
17108634 TTTGGTTAAA
17108644 AATTACCCG
1 AATTACCCG
17108653 AATTACCCG
1 AATTACCCG
*
17108662 AATTAACCG
1 AATTACCCG
*
17108671 AATTA-TCG
1 AATTACCCG
*
17108679 AAAAATACCCG
1 --AATTACCCG
*
17108690 AATTACCTG
1 AATTACCCG
17108699 AATT
1 AATT
17108703 TTTTTATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
8 2 0.05
9 33 0.80
10 4 0.10
11 2 0.05
ACGTcount: A:0.41, C:0.24, G:0.10, T:0.25
Consensus pattern (9 bp):
AATTACCCG
Found at i:17108860 original size:13 final size:13
Alignment explanation
Indices: 17108842--17108871 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
17108832 TTTTAGTTTT
17108842 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
17108855 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
17108868 ATTG
1 ATTG
17108872 AGTTTGGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.43, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:17116163 original size:208 final size:208
Alignment explanation
Indices: 17115805--17116193 Score: 649
Period size: 208 Copynumber: 1.9 Consensus size: 208
17115795 CCCTTTGATG
*
17115805 ATCTCGAGAGATATAAGATGATTGGGAAACTAAACTATCTTACTGTGACTGGTCCAAACATTATA
1 ATCTCGAGAGATATAAGATGATTGGGAAACTAAACTATCTTACAGTGACTGGTCCAAACATTATA
* * * * *
17115870 TTTGCAGTGAGTATTGTCAGCTTATTCATGTCTGCACTTATAGTTAGACATCGGGTTATTGTTGA
66 TTTGCAGTGAGTATTGTCAGCTTATTCACGTCTGCACCTACAGTTAAACATCGGGTTATTGCTGA
*
17115935 ACAAATTCTATGTTACTTAAAAGGAGCTTTAGGATTGGGAATATCATACAACAAACAATCATAGG
131 ACAAATTCTATGTTACTTAAAAAGAGCTTTAGGATTGGGAATATCATACAACAAACAATCATAGG
17116000 AATAGTCGTTCCA
196 AATAGTCGTTCCA
*
17116013 ATCTCGAGAGATATAAGATGATAGTTGGGAAATTAAACTATCTTACAG-GACTGGTCCAAACATT
1 ATCTCGAGAGATATAAGATG--A-TTGGGAAACTAAACTATCTTACAGTGACTGGTCCAAACATT
*
17116077 ATATTTG-A-TGAGTATTGTCAGCTTATTCACGTCTGCACCTACAGTTAAACATTGGGTTATTGC
63 ATATTTGCAGTGAGTATTGTCAGCTTATTCACGTCTGCACCTACAGTTAAACATCGGGTTATTGC
17116140 TGAACAAATTCTATGTTACTTAAAAAGAGCTTTAGGATTGGGAATATCATACAA
128 TGAACAAATTCTATGTTACTTAAAAAGAGCTTTAGGATTGGGAATATCATACAA
17116194 AAATCATAGA
Statistics
Matches: 169, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
208 122 0.72
209 1 0.01
210 24 0.14
211 22 0.13
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.33
Consensus pattern (208 bp):
ATCTCGAGAGATATAAGATGATTGGGAAACTAAACTATCTTACAGTGACTGGTCCAAACATTATA
TTTGCAGTGAGTATTGTCAGCTTATTCACGTCTGCACCTACAGTTAAACATCGGGTTATTGCTGA
ACAAATTCTATGTTACTTAAAAAGAGCTTTAGGATTGGGAATATCATACAACAAACAATCATAGG
AATAGTCGTTCCA
Found at i:17116291 original size:103 final size:103
Alignment explanation
Indices: 17116112--17116304 Score: 287
Period size: 103 Copynumber: 1.9 Consensus size: 103
17116102 TTCACGTCTG
** **
17116112 CACCTACAGTTAAACATTGGGTTATTGCTGAACAAATTCTATGTTACTTAAAAAGAGCTTTAGGA
1 CACCTACAGTTAAACATTGGGCGATTGCTGAACAAATTCTATGTTACCCAAAAAGAGCTTTAGGA
*
17116177 TTGGGAATATCATACAAAAATCATAGAAATACTCATTC
66 CTGGGAATATCATACAAAAATCATAGAAATACTCATTC
* * * * *
17116215 CACCTACAGTTAAACATTGGGCGATTGTTGAATAGATTCTATGTTACCCAAAAGGAGCTTTAGGG
1 CACCTACAGTTAAACATTGGGCGATTGCTGAACAAATTCTATGTTACCCAAAAAGAGCTTTAGGA
*
17116280 CTGGGAATATCATACAACAATCATA
66 CTGGGAATATCATACAAAAATCATA
17116305 TGACTAATCG
Statistics
Matches: 79, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
103 79 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30
Consensus pattern (103 bp):
CACCTACAGTTAAACATTGGGCGATTGCTGAACAAATTCTATGTTACCCAAAAAGAGCTTTAGGA
CTGGGAATATCATACAAAAATCATAGAAATACTCATTC
Found at i:17118849 original size:2 final size:2
Alignment explanation
Indices: 17118842--17118875 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
17118832 TGTTAATTGC
17118842 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
17118876 GAGAGTCTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:17128673 original size:29 final size:29
Alignment explanation
Indices: 17128640--17128696 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
17128630 ATGTGTTAAA
17128640 TTGAATTATTATTTGTGAATTGTACAATG
1 TTGAATTATTATTTGTGAATTGTACAATG
17128669 TTGAATTATTATTTGTGAATTGTACAAT
1 TTGAATTATTATTTGTGAATTGTACAAT
17128697 TTCCATGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.49
Consensus pattern (29 bp):
TTGAATTATTATTTGTGAATTGTACAATG
Found at i:17128871 original size:25 final size:25
Alignment explanation
Indices: 17128835--17128946 Score: 127
Period size: 25 Copynumber: 4.5 Consensus size: 25
17128825 GACACACCAG
*
17128835 AGCTCGTATGAGCTTCCCGTTATAC
1 AGCTCGCATGAGCTTCCCGTTATAC
* * **
17128860 AACTCGCATGAGCTTCCCATTATTT
1 AGCTCGCATGAGCTTCCCGTTATAC
* *
17128885 AGCTCACATGAGCTTCCCGTTATTC
1 AGCTCGCATGAGCTTCCCGTTATAC
* *
17128910 AGCTCGGAGGAGCTTCCCGTT-TAC
1 AGCTCGCATGAGCTTCCCGTTATAC
*
17128934 AGCTCGTATGAGC
1 AGCTCGCATGAGC
17128947 ATACATGAAT
Statistics
Matches: 72, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
24 13 0.18
25 59 0.82
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.30
Consensus pattern (25 bp):
AGCTCGCATGAGCTTCCCGTTATAC
Found at i:17131282 original size:9 final size:9
Alignment explanation
Indices: 17131268--17131304 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
17131258 TATAGTTTGA
17131268 TATTCGAAT
1 TATTCGAAT
17131277 TATTCGAAT
1 TATTCGAAT
*
17131286 TATTCGAGT
1 TATTCGAAT
17131295 TATTCGAAT
1 TATTCGAAT
17131304 T
1 T
17131305 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:17136351 original size:9 final size:9
Alignment explanation
Indices: 17136337--17136430 Score: 143
Period size: 9 Copynumber: 10.4 Consensus size: 9
17136327 TTTGGTTAAA
17136337 AATTAACCG
1 AATTAACCG
17136346 AATTAACCG
1 AATTAACCG
17136355 AATTAACCG
1 AATTAACCG
17136364 AATTAACCG
1 AATTAACCG
*
17136373 AATTACCCG
1 AATTAACCG
17136382 AATTAACCG
1 AATTAACCG
*
17136391 AATTACCCG
1 AATTAACCG
*
17136400 AATTACCCG
1 AATTAACCG
*
17136409 AATTAACCA
1 AATTAACCG
*
17136418 AATTAACCA
1 AATTAACCG
17136427 AATT
1 AATT
17136431 GAATCACTAC
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 80 1.00
ACGTcount: A:0.44, C:0.24, G:0.09, T:0.23
Consensus pattern (9 bp):
AATTAACCG
Found at i:17141585 original size:44 final size:44
Alignment explanation
Indices: 17141526--17141630 Score: 156
Period size: 44 Copynumber: 2.4 Consensus size: 44
17141516 TATTTTTGCG
* *
17141526 TATATATATATTTATAGTCTAATTTTTAATTTCTTGATATATTA
1 TATATACATATTTATAGTCTAATTTTTAATTTCTTAATATATTA
*
17141570 TATATACATATTTATAGTCTAATTTTTAGTTTCTTAATATATTA
1 TATATACATATTTATAGTCTAATTTTTAATTTCTTAATATATTA
* *
17141614 TACATGCATATTATATA
1 TATATACATATT-TATA
17141631 TTTTTTCGTA
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
44 51 0.93
45 4 0.07
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (44 bp):
TATATACATATTTATAGTCTAATTTTTAATTTCTTAATATATTA
Found at i:17144930 original size:2 final size:2
Alignment explanation
Indices: 17144923--17144951 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
17144913 TCACAACCAA
17144923 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
17144952 ATTAAAACAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:17149712 original size:18 final size:18
Alignment explanation
Indices: 17149685--17149719 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
17149675 GAAATAGTTA
*
17149685 CAAAATAATACATAAATG
1 CAAAACAATACATAAATG
*
17149703 CAAAACAATATATAAAT
1 CAAAACAATACATAAAT
17149720 ACTCAAAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.11, G:0.03, T:0.23
Consensus pattern (18 bp):
CAAAACAATACATAAATG
Found at i:17158064 original size:13 final size:14
Alignment explanation
Indices: 17158044--17158081 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
17158034 TTATTTTAAT
17158044 TTAT-TATATATTA
1 TTATATATATATTA
17158057 TATATATATATATTA
1 T-TATATATATATTA
17158072 TTACTATATA
1 TTA-TATATA
17158082 CTGTTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 1 0.05
14 5 0.23
15 16 0.73
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (14 bp):
TTATATATATATTA
Found at i:17158068 original size:15 final size:15
Alignment explanation
Indices: 17158048--17158081 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
17158038 TTTAATTTAT
17158048 TATATATTATATA-TA
1 TATATATTAT-TACTA
17158063 TATATATTATTACTA
1 TATATATTATTACTA
17158078 TATA
1 TATA
17158082 CTGTTATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 2 0.11
15 16 0.89
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
TATATATTATTACTA
Found at i:17161744 original size:87 final size:87
Alignment explanation
Indices: 17161632--17161847 Score: 335
Period size: 87 Copynumber: 2.5 Consensus size: 87
17161622 TTGTCTTTTT
* * *
17161632 TTTTTCATCATTAAATTTATAGTTTTCAAGTTGGATAAGTGAAAAAAATGTTGTAGAAAA-CTTT
1 TTTTTCATCATTAAACTTAAAGTTTTCAAGTTGGATAAGTGAAAAAAATGTTGTAGAAAATC-CT
17161696 CTTTTAAACTTATTTTCATCTTC
65 CTTTTAAACTTATTTTCATCTTC
* * * * *
17161719 TTTTTCCTCGTTAAACTTAAGGTTTTCAAGTTGGATAAGCGAGAAAAATGTTGTAGAAAATCCTC
1 TTTTTCATCATTAAACTTAAAGTTTTCAAGTTGGATAAGTGAAAAAAATGTTGTAGAAAATCCTC
17161784 TTTTAAACTTATTTTCATCTTC
66 TTTTAAACTTATTTTCATCTTC
*
17161806 TTTTTCATCATTAAACTTAAAGTTTTCAAGTTGAATAAGTGA
1 TTTTTCATCATTAAACTTAAAGTTTTCAAGTTGGATAAGTGA
17161848 TAATTTCAAA
Statistics
Matches: 115, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
87 114 0.99
88 1 0.01
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (87 bp):
TTTTTCATCATTAAACTTAAAGTTTTCAAGTTGGATAAGTGAAAAAAATGTTGTAGAAAATCCTC
TTTTAAACTTATTTTCATCTTC
Found at i:17164472 original size:20 final size:18
Alignment explanation
Indices: 17164447--17164486 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
17164437 AAGTTTTTGG
17164447 TTTCCCATAAAGAAAATTAA
1 TTTCCCAT--AGAAAATTAA
*
17164467 TTTCCCATTGAAAATTAA
1 TTTCCCATAGAAAATTAA
17164485 TT
1 TT
17164487 AAAGTTATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 11 0.58
20 8 0.42
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (18 bp):
TTTCCCATAGAAAATTAA
Found at i:17168741 original size:22 final size:23
Alignment explanation
Indices: 17168713--17168755 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
17168703 TATATTGTAC
*
17168713 AATCATACCATG-TTGCAAAATT
1 AATCATACCATGCTTACAAAATT
17168735 AATCATACCATGCTTACAAAA
1 AATCATACCATGCTTACAAAA
17168756 GCGTTTTTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.28
Consensus pattern (23 bp):
AATCATACCATGCTTACAAAATT
Found at i:17174247 original size:14 final size:14
Alignment explanation
Indices: 17174228--17174279 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
17174218 ATGAGTATGT
17174228 TTTATTATTGTAGA
1 TTTATTATTGTAGA
* *
17174242 TTTATTATGAGTATGT
1 TTTATTAT-TGTA-GA
*
17174258 TTTATTATTGTAAA
1 TTTATTATTGTAGA
17174272 TTTATTAT
1 TTTATTAT
17174280 GACAAAAAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
14 16 0.52
15 6 0.19
16 9 0.29
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.60
Consensus pattern (14 bp):
TTTATTATTGTAGA
Found at i:17174252 original size:30 final size:30
Alignment explanation
Indices: 17174206--17174281 Score: 125
Period size: 30 Copynumber: 2.5 Consensus size: 30
17174196 AATAAACTTG
*
17174206 GTAAATTTACTCATGAGTATGTTTTATTATT
1 GTAAATTTA-TTATGAGTATGTTTTATTATT
*
17174237 GTAGATTTATTATGAGTATGTTTTATTATT
1 GTAAATTTATTATGAGTATGTTTTATTATT
17174267 GTAAATTTATTATGA
1 GTAAATTTATTATGA
17174282 CAAAAAACTC
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 34 0.81
31 8 0.19
ACGTcount: A:0.30, C:0.03, G:0.14, T:0.53
Consensus pattern (30 bp):
GTAAATTTATTATGAGTATGTTTTATTATT
Found at i:17174263 original size:16 final size:16
Alignment explanation
Indices: 17174218--17174265 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
17174208 AAATTTACTC
17174218 ATGAGTATGTTTTATT
1 ATGAGTATGTTTTATT
* *
17174234 AT-TGTA-GATTTATT
1 ATGAGTATGTTTTATT
17174248 ATGAGTATGTTTTATT
1 ATGAGTATGTTTTATT
17174264 AT
1 AT
17174266 TGTAAATTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 9 0.35
15 6 0.23
16 11 0.42
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.56
Consensus pattern (16 bp):
ATGAGTATGTTTTATT
Found at i:17176330 original size:17 final size:16
Alignment explanation
Indices: 17176305--17176338 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
17176295 AATTGGATTG
*
17176305 AAAAATAATTTAATTA
1 AAAAATAATTAAATTA
17176321 AAAAACTAATTAAATTA
1 AAAAA-TAATTAAATTA
17176338 A
1 A
17176339 TTAATTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (16 bp):
AAAAATAATTAAATTA
Found at i:17176345 original size:13 final size:13
Alignment explanation
Indices: 17176307--17176349 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
17176297 TTGGATTGAA
*
17176307 AAATAATTTAATT
1 AAATAAATTAATT
*
17176320 AAA-AAACTAATT
1 AAATAAATTAATT
*
17176332 AAATTAATTAATT
1 AAATAAATTAATT
17176345 AAATA
1 AAATA
17176350 CTATTTGGGG
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
12 10 0.42
13 14 0.58
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (13 bp):
AAATAAATTAATT
Found at i:17178104 original size:5 final size:5
Alignment explanation
Indices: 17178096--17178122 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
17178086 AAAGGAAAGA
17178096 AAATC AAATC AAATC AAATC AAATC AA
1 AAATC AAATC AAATC AAATC AAATC AA
17178123 GCATATTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.63, C:0.19, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATC
Found at i:17179594 original size:15 final size:15
Alignment explanation
Indices: 17179571--17179603 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
17179561 TTTTTATGCC
17179571 ATTGATGTATTTATT
1 ATTGATGTATTTATT
*
17179586 ATTGTTGTATTTATT
1 ATTGATGTATTTATT
17179601 ATT
1 ATT
17179604 TTAGCATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (15 bp):
ATTGATGTATTTATT
Found at i:17191643 original size:44 final size:45
Alignment explanation
Indices: 17191585--17193135 Score: 298
Period size: 44 Copynumber: 35.7 Consensus size: 45
17191575 ACGCATCTAG
*
17191585 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
* * **
17191629 TCTTATC-CTTCTGAAGTTGCAG-AGAGGCAGACTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGAAAGCAAA
* ** * **
17191674 TCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTAAAG-CCG-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCA-AA
* * ** ** * * **
17191718 TCCTATCTTCCTGAAGTTATAGTGGAGTGGA-T-TA-AAACCTTGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGC--AAA
* * * * * * * * *
17191762 TCTTATTTCTCTGAAGTTGTAG-AGAGCA-AAT--CG-CATCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
* * *
17191802 TTTTATC-CTCCTGAAGTTGCAG-AGAGGCAGACTGAAG-ATGACAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGAAAG-CAAA
* * ** * **
17191847 TCTTATCTCCCTGAAATTACAGTGGAGCAGGTTAAAG-CCG-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCA-AA
* * ** * ** **
17191891 TCCTATCTTCCTGAAGTTGCAGTGGAGTGGA-TTAA-AACCCTGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGC-AAA
* * * * * * *
17191935 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T--CG-CATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
* * *
17191975 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACT-AAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
* * **
17192019 TCTTATC-CTCCTAAAGTTGCAG-AGAGACAGACTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGAG-CAGACTGAAGAAAGCAAA
* ** * **
17192064 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTAAAG-CCG-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCA-AA
* * * ** * * **
17192108 TCCTATCTTCCTGAAGTTGGAGTGGAGTGGA-T-TA-AAACCTTGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGC--AAA
* * * * * * * * * *
17192152 TCTTATCTCTCTAAAGTTACAG-AGAGTAGA-T--TG-CATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
* * *
17192192 TCTTATCTCCCTGAAGTTACAGTGGAGCAGAC-CAAGAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
* **
17192236 TCTTATACT-CCTGAAGTTGCAG-AGAGGCAGACTGAAGATGGCAAA
1 TCTTAT-CTCCCTGAAGTTGCAGTGGA-GCAGACTGAAGAAAGCAAA
* ** * * **
17192281 TCTTATCTCCCTGAAGTTACAGTGGAGTGGA-T-TA-AAACCTTGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGC--AAA
* * * * * * * *
17192325 TATTATCTCTCTAAAGTTGCAG-AGAGCAGA-T--TG-CATCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
* ** *
17192365 TCTTATC-CTCCTGAAGTTGCAG-AGATGCAGACTGAAGATGGCAAG
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGAAAGCAAA
* ** * **
17192410 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAG-CTG-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCA-AA
* * * *
17192454 TCCTATCTTCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
* * **
17192498 TCTTATC-CTCCTGAAGTTTCAG-AGAGGCAGACTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGAAAGCAAA
* ** * **
17192543 TCTTATCTCCCTGAAGTTGCAGTGAAGCAGGTTAAAG-CCG-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCA-AA
* * ** * * *
17192587 TCCTATCTTCCTGAAGTTGCAGTGGAGTGGA-T-TA-AAACCTTAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGC--AAA
* * * * * * *
17192631 TCTTATCTCTCTGAAGTTGCAG-AGAGTAGA-T---CACATCTAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
* * *
17192671 TCTTATCTCCCTGAAGTTACAGTGGAGCTGACT-AAGAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
* **
17192715 TCTTATC-CTCCTGAAGTTGCAG-AGAGGCAGACTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGAAAGCAAA
* ** * * **
17192760 TCTTATCTCCCTGAAGTTACAGTGGAGTGGA-T-TA-AAACCTTGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGC--AAA
* * * * * * *
17192804 TCTTATCTCTCTAAAGTTGCAG-AGAGCAGA-T--CG-CATCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
* * **
17192844 TCTTATC-CTCCTGAAGTTGCAG-AGAGGTAGACTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGAAAGCAAA
* * ** * **
17192889 TCTTATCTCTCTGAAGTTGCAGTGGAGTAGGTTAAAG-CCG-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCA-AA
* * ** * * **
17192933 TCCTATCTTCCTGAAGTTGCAGTGGAGTGGA-T-TA-AAACCTTGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGC--AAA
* * * * * * * *
17192977 TCTTATCTCTCTGAAATTGCAG-AGAGCAGA-T--CG-CATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
* * *
17193017 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGACT-AAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
* **
17193061 TCTTATC-CTCCTGAAGTTGCAG-AGAGGCAGACTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGAAAGCAAA
* *
17193106 TCTTATCTTCCTGAAGTTGTAGTGGAGCAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAG
17193136 GTTAAAGCCG
Statistics
Matches: 1077, Mismatches: 320, Indels: 219
0.67 0.20 0.14
Matches are distributed among these distances:
39 3 0.00
40 140 0.13
41 38 0.04
42 29 0.03
43 81 0.08
44 478 0.44
45 283 0.26
46 25 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
Found at i:17191654 original size:84 final size:84
Alignment explanation
Indices: 17191507--17192572 Score: 218
Period size: 89 Copynumber: 12.3 Consensus size: 84
17191497 CCAATGATCC
** *
17191507 TATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACAGATCTTATCTCTCTGAAGTTGCAGAGA-G
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAACAGATCTTATCTCTCTGAAGTTGCAGAGAGG
* *
17191571 CAGAAC-G-CAT-CTAGTCT
66 CAG-ACTGACATGCAAATCT
17191588 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAAGCA-AGTCTTATC-CTTCTGAAGTTGCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TAA-AAA-CAGA-TCTTATCTC-TCTGAAGTTGCAG
*
17191651 AGAGGCAGACTGAAGATGGCAAATCT
61 AGAGGCAGACTG-ACAT-GCAAATCT
* * ** * * **
17191677 TATCTCCCTGAAGTTACAGTGGAGCAGGTTAAAGCCGATAATCCTATCT-TCCTGAAGTTATAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCA-GATAAAAAC-A-GATCTTATCTCT-CTGAAGTTGCAG-
* * * * *
17191741 GGAGTG--GATTAAAACCTTG--GATCT
61 AGAG-GCAGACT--GA-CATGCAAATCT
* * * * * *** * *
17191765 TATTTCTCTGAAGTTGTAG-AGAGCAAATCGCATCA-AGTTTTATC-CTCCTGAAGTTGCAGAGA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAACAGA-TCTTATCTCT-CTGAAGTTGCAGAGA
*
17191827 GGCAGACTGAAGATGACAAATCT
64 GGCAGACTG-ACATG-CAAATCT
* * * ** * *
17191850 TATCTCCCTGAAATTACAGTGGAGCAGGTTAAAGCCGATAATCCTATCT-TCCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCA-GATAAAAAC-A-GATCTTATCTCT-CTGAAGTTGCAG-
* * * * ** **
17191914 GGAGTG--GATTAAAACCCTGGATCT
61 AGAG-GCAGACTGACATGC-AAATCT
* * *** * * * *
17191938 TATCTCTCTGAAGTTGCAG-AGAGCAGATCGCATCTAG-TCTTATCTCCCTAAAGTTGCAGTG-G
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAAC-AGATCTTATCTCTCTGAAGTTGCAGAGAG
* * * *
17192000 AGCAGACTAAGTAAGCAAGTCT
65 -GCAGACTGA-CATGCAAATCT
* * ** *
17192022 TATC-CTCCTAAAGTTGCAG-AGAGACAGACTGAAGATGGCAAATCTTATCTC-CTTGAAGTTGC
1 TATCTC-CCTGAAGTTGCAGTGGAG-CAGA-T-AA-A-AACAGATCTTATCTCTC-TGAAGTTGC
* * * * *
17192084 AGTG-GAGCAG-GTTA-AAGCCGATAATCC
59 AGAGAG-GCAGACTGACATG-C-A-AATCT
* * ** * * * *
17192111 TATCTTCCTGAAGTTGGAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTAAAGTTACAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAAAC--AGATCTTATCTCTCTGAAGTTGCAGAG
* * * *
17192176 A-GTAGATTG-CAT-CTAGTCT
63 AGGCAGACTGACATGCAAATCT
* *
17192195 TATCTCCCTGAAGTTACAGTGGAGCAGACCAAGAAAGCA-AGTCTTATACTC-CTGAAGTTGCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TAA-AAA-CAGA-TCTTAT-CTCTCTGAAGTTGCAG
*
17192258 AGAGGCAGACTGAAGATGGCAAATCT
61 AGAGGCAGACTG-ACAT-GCAAATCT
* ** * * * *
17192284 TATCTCCCTGAAGTTACAGTGGAGTGGATTAAAACCTTGGATATTATCTCTCTAAAGTTGCAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAAAC--AGATCTTATCTCTCTGAAGTTGCAGAG
* *
17192349 A-GCAGATTG-CAT-CAAGTCT
63 AGGCAGACTGACATGCAAATCT
* ** * *
17192368 TATC-CTCCTGAAGTTGCAG-AGATGCAGACTGAAGATGGCA-AGTCTTATCTCCCTGAAGTTGT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGA-T-AA-A-AACAGA-TCTTATCTCTCTGAAGTTGC
* * * * *
17192430 AGTG-GAGCAG-GTTA-AAGCTGATAATCC
59 AGAGAG-GCAGACTGACATGC--A-AATCT
* * *
17192457 TATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA-AGTCTTATC-CTCCTGAAGTTTCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TAA--AAACAGA-TCTTATCTCT-CTGAAGTTGCAG
*
17192520 AGAGGCAGACTGAAGATGGCAAATCT
61 AGAGGCAGACTG-ACAT-GCAAATCT
*
17192546 TATCTCCCTGAAGTTGCAGTGAAGCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAG
17192573 GTTAAAGCCG
Statistics
Matches: 707, Mismatches: 181, Indels: 186
0.66 0.17 0.17
Matches are distributed among these distances:
81 26 0.04
82 7 0.01
83 16 0.02
84 166 0.23
85 64 0.09
86 26 0.04
87 26 0.04
88 116 0.16
89 235 0.33
90 19 0.03
91 4 0.01
92 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (84 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAACAGATCTTATCTCTCTGAAGTTGCAGAGAGG
CAGACTGACATGCAAATCT
Found at i:17192296 original size:390 final size:389
Alignment explanation
Indices: 17191492--17192416 Score: 1255
Period size: 390 Copynumber: 2.4 Consensus size: 389
17191482 AGAACAGATC
* * *
17191492 GAAAGCCAATGATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAA--C-AGATCTTATCTC
1 GAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCCTGGATCTTATCTC
*
17191554 TCTGAAGTTGCAGAGAGCAGAACGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTA
66 TCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTA
* * *
17191619 AGAAAGCAAGTCTTATCCTTCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCC
131 AG-AAGCAAGTCTTATCCTCCTAAAGTTGCAGAGAGACAGACTGAAGATGGCAAATCTTATCTCC
*
17191684 CTGAAGTTACAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTATAGTGGAGTGGA
195 CTGAAGTTACAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTAGAGTGGAGTGGA
* * ** *
17191749 TTAAAACCTTGGATCTTATTTCTCTGAAGTTGTAGAGAGCAAATCGCATCAAGTTTTATCCTCCT
260 TTAAAACCTTGGATCTTATCTCTCTAAAGTTACAGAGAGCAAATCGCATCAAGTCTTATCCTCCT
* * * * *
17191814 GAAGTTGCAGAGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAAATTACAGTGGAGCAGGT
325 GAAGTTACAGAGAGGCAGACTCAAGAAGACAAATCTTATCTCCCTGAAATTACAGAGGAGCAGCT
* *
17191879 TAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCCTGGATCTTATCTC
1 GAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCCTGGATCTTATCTC
*
17191944 TCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTA
66 TCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTA
17192009 AGTAAGCAAGTCTTATCCTCCTAAAGTTGCAGAGAGACAGACTGAAGATGGCAAATCTTATCTCC
131 AG-AAGCAAGTCTTATCCTCCTAAAGTTGCAGAGAGACAGACTGAAGATGGCAAATCTTATCTCC
* * *
17192074 TTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGGAGTGGAGTGGA
195 CTGAAGTTACAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTAGAGTGGAGTGGA
* * * *
17192139 TTAAAACCTTGGATCTTATCTCTCTAAAGTTACAGAGAGTAGATTGCATCTAGTCTTAT-CTCCC
260 TTAAAACCTTGGATCTTATCTCTCTAAAGTTACAGAGAGCAAATCGCATCAAGTCTTATCCT-CC
* * * *
17192203 TGAAGTTACAGTG-GAGCAGAC-CAAGAA-AGCAAGTCTTATACT-CCTGAAGTTGCAGA-GAGG
324 TGAAGTTACAGAGAG-GCAGACTCAAGAAGA-CAAATCTTAT-CTCCCTGAAATTACAGAGGA-G
17192263 CAGACT
385 CAG-CT
* * * * *
17192269 GAAGATGGC-A-AATCTTATCTCCCTGAAGTTACAGTGGAGTGGATTAAAACCTTGGATATTATC
1 GAA-A-GCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCCTGGATCTTATC
* * * *
17192332 TCTCTAAAGTTGCAGAGAGCAGATTGCATCAAGTCTTATC-CTCCTGAAGTTGCAG-AGATGCAG
64 TCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAG
*
17192395 ACTGAAGATGGCAAGTCTTATC
127 ACT-AAGA-AGCAAGTCTTATC
17192417 TCCCTGAAGT
Statistics
Matches: 477, Mismatches: 46, Indels: 26
0.87 0.08 0.05
Matches are distributed among these distances:
387 45 0.09
388 3 0.01
389 35 0.07
390 375 0.79
391 17 0.04
392 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (389 bp):
GAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCCTGGATCTTATCTC
TCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTA
AGAAGCAAGTCTTATCCTCCTAAAGTTGCAGAGAGACAGACTGAAGATGGCAAATCTTATCTCCC
TGAAGTTACAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTAGAGTGGAGTGGAT
TAAAACCTTGGATCTTATCTCTCTAAAGTTACAGAGAGCAAATCGCATCAAGTCTTATCCTCCTG
AAGTTACAGAGAGGCAGACTCAAGAAGACAAATCTTATCTCCCTGAAATTACAGAGGAGCAGCT
Found at i:17192300 original size:89 final size:87
Alignment explanation
Indices: 17192192--17192572 Score: 323
Period size: 89 Copynumber: 4.3 Consensus size: 87
17192182 TTGCATCTAG
* *
17192192 TCTTATCTCCCTGAAGTTACAGTGGAGCAGACCAAGAAAGCAAGTCTTATACTCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAAGCAAGTCTTAT-CTCCTGAAGTTGCA
17192257 GAGAGGCAGACTGAAGATGGCAAA
65 GAGAGGCAGACTGAAGAT-GCAAA
* ** * * ** * *
17192281 TCTTATCTCCCTGAAGTTACAGTGGAGTGGA-TTA-AAACCTTGGATATTATCTCTCTAAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAAGC-AAG-TCTTATCTC-CTGAAGTTG
* * *
17192344 CAGAGA-GCAGATTG--CAT-CAAG
63 CAGAGAGGCAGACTGAAGATGCAAA
* **
17192365 TCTTATC-CTCCTGAAGTTGCAG-AGATGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTT
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGAAAGCAAGTCTTATCT-CCTGAAGTT
* * ** * *
17192428 GTAGTG-GAGCAGGTTAAAGCTG-ATAA
62 GCAGAGAG-GCAGACTGAAGATGCA-AA
* * * *
17192454 TCCTATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTTCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAAGCAAGTCTTAT-CTCCTGAAGTTGCA
17192519 GAGAGGCAGACTGAAGATGGCAAA
65 GAGAGGCAGACTGAAGAT-GCAAA
*
17192543 TCTTATCTCCCTGAAGTTGCAGTGAAGCAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAG
17192573 GTTAAAGCCG
Statistics
Matches: 224, Mismatches: 47, Indels: 42
0.72 0.15 0.13
Matches are distributed among these distances:
83 3 0.01
84 25 0.11
85 19 0.08
86 11 0.05
87 6 0.03
88 49 0.22
89 108 0.48
90 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (87 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAAGCAAGTCTTATCTCCTGAAGTTGCAG
AGAGGCAGACTGAAGATGCAAA
Found at i:17192484 original size:479 final size:479
Alignment explanation
Indices: 17191978--17192959 Score: 1730
Period size: 479 Copynumber: 2.1 Consensus size: 479
17191968 CATCTAGTCT
* *
17191978 TATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTAAAGTTGCAGAG
1 TATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTAAAGTTGCAGAG
* *
17192043 AGACAGACTGAAGATGGCAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAA
66 AGACAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGGTTAAAGCCGATAA
* *
17192108 TCCTATCTTCCTGAAGTTGGAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTAAAGTTACA
131 TCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTAAAGTTACA
** *
17192173 GAGAGTAGATTGCATCTAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACCAAGAAAGCAAGTC
196 GAGAGTAGATCACATCTAATCTTATCTCCCTGAAGTTACAGTGGAGCAGACCAAGAAAGCAAGTC
17192238 TTATACTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTACAG
261 TTATACTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTACAG
*
17192303 TGGAGTGGATTAAAACCTTGGATATTATCTCTCTAAAGTTGCAGAGAGCAGATTGCATCAAGTCT
326 TGGAGTGGATTAAAACCTTGGATATTATCTCTCTAAAGTTGCAGAGAGCAGATCGCATCAAGTCT
* * *
17192368 TATCCTCCTGAAGTTGCAGAGATGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGTAGT
391 TATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGT
*
17192433 GGAGCAGGTTAAAGCTGATAATCC
456 GGAGCAGGTTAAAGCCGATAATCC
* *
17192457 TATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTTCAGAG
1 TATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTAAAGTTGCAGAG
*
17192522 AGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGGTTAAAGCCGATAA
66 AGACAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGGTTAAAGCCGATAA
* *
17192587 TCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCA
131 TCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTAAAGTTACA
* *
17192652 GAGAGTAGATCACATCTAATCTTATCTCCCTGAAGTTACAGTGGAGCTGACTAAGAAAGCAAGTC
196 GAGAGTAGATCACATCTAATCTTATCTCCCTGAAGTTACAGTGGAGCAGACCAAGAAAGCAAGTC
*
17192717 TTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTACAG
261 TTATACTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTACAG
*
17192782 TGGAGTGGATTAAAACCTTGGATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCGCATCAAGTCT
326 TGGAGTGGATTAAAACCTTGGATATTATCTCTCTAAAGTTGCAGAGAGCAGATCGCATCAAGTCT
* *
17192847 TATCCTCCTGAAGTTGCAGAGAGGTAGACTGAAGATGGCAAATCTTATCTCTCTGAAGTTGCAGT
391 TATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGT
*
17192912 GGAGTAGGTTAAAGCCGATAATCC
456 GGAGCAGGTTAAAGCCGATAATCC
17192936 TATCTTCCTGAAGTTGCAGTGGAG
1 TATCTTCCTGAAGTTGCAGTGGAG
17192960 TGGATTAAAA
Statistics
Matches: 477, Mismatches: 26, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
479 477 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (479 bp):
TATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTAAAGTTGCAGAG
AGACAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGGTTAAAGCCGATAA
TCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTAAAGTTACA
GAGAGTAGATCACATCTAATCTTATCTCCCTGAAGTTACAGTGGAGCAGACCAAGAAAGCAAGTC
TTATACTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTACAG
TGGAGTGGATTAAAACCTTGGATATTATCTCTCTAAAGTTGCAGAGAGCAGATCGCATCAAGTCT
TATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGT
GGAGCAGGTTAAAGCCGATAATCC
Found at i:17192539 original size:133 final size:132
Alignment explanation
Indices: 17192195--17192698 Score: 561
Period size: 133 Copynumber: 3.9 Consensus size: 132
17192185 CATCTAGTCT
* * * *
17192195 TATCTCCCTGAAGTTACAGTGGAGCAGACCAAGAAAGCAAGTCTTATACTCCTGAAGTTGCAGAG
1 TATCTTCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTATCCTCCTGAAGTTGCAGAG
* * *
17192260 AGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTACAGTGGAG-TGGATTAAAACCTTGG
65 AGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGG-TT-AAAGC-T-G
17192324 AT-AT--
126 ATAATCC
* * * * *
17192328 TATC-TCTCTAAAGTTGCAG-AGAGCAGA-T-TGCATCAAGTCTTATCCTCCTGAAGTTGCAGAG
1 TATCTTC-CTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCCTCCTGAAGTTGCAGAG
* * *
17192389 ATGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGCTGATAA
65 AGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCTGATAA
17192454 TCC
130 TCC
*
17192457 TATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTTCAGAG
1 TATCTTCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTATCCTCCTGAAGTTGCAGAG
* *
17192522 AGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGGTTAAAGCCGATAA
65 AGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCTGATAA
17192587 TCC
130 TCC
** * * *
17192590 TATCTTCCTGAAGTTGCAGTGGAGTGGATTAA-AACCTTAGATCTTAT-CTCTCTGAAGTTGCAG
1 TATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCTTATCCTC-CTGAAGTTGCAG
* * * * *
17192653 AGA-GTAGA-T-CACAT--CTAATCTTATCTCCCTGAAGTTACAGTGGAGC
63 AGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGC
17192699 TGACTAAGAA
Statistics
Matches: 320, Mismatches: 38, Indels: 31
0.82 0.10 0.08
Matches are distributed among these distances:
126 3 0.01
127 3 0.01
128 33 0.10
129 89 0.28
130 15 0.05
131 5 0.02
132 18 0.06
133 154 0.48
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (132 bp):
TATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCCTCCTGAAGTTGCAGAGA
GGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCTGATAAT
CC
Found at i:17192696 original size:217 final size:214
Alignment explanation
Indices: 17191493--17192829 Score: 766
Period size: 217 Copynumber: 6.2 Consensus size: 214
17191483 GAACAGATCG
* * *
17191493 AAAGCCAATG-ATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAA-C-AGATCTTATCTCT
1 AAAGCC-ATGAATCCTATCTTCCTGAAGTTGCAG-AGAGTGGATTAAAACCTAG-TCTTATCTCC
* ** * *
17191555 CTGAAGTTGCAG-AGAGCAGAACGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-
63 CTGAAGTTGCAGTAGAGCAGATCAAATCAAGTCTTATCTCCCTGAAGTTGCAG-AGAGCAGACTG
* *
17191618 AAGAAAGCAAGTCTTATCCTTCTGAAGTTGCAGAGAG-GCAGACTGAAGATGGCAAATCTTATCT
127 AAG-AAGCAAATCTTAT-CTCCTGAAGTTGCAGAGAGAGCAGACTGAAGATGGCAAATCTTATCT
*
17191682 CCCTGAAGTTACAGTGGAGCAGGTT
190 CCCTGAAGTTGCAGTGGAGCAGGTT
** * * *
17191707 AAAGCCGAT-AATCCTATCTTCCTGAAGTTATAGTGGAGTGGATTAAAACCTTGGATCTTATTTC
1 AAAGCC-ATGAATCCTATCTTCCTGAAGTTGCAG-AGAGTGGATTAAAACC-TAG-TCTTATCTC
* * * ** *
17191771 TCTGAAGTTGTAG-AGAGCAAATCGCATCAAGTTTTATC-CTCCTGAAGTTGCAGAGAGGCAGAC
62 CCTGAAGTTGCAGTAGAGCAGATCAAATCAAGTCTTATCTC-CCTGAAGTTGCAGAGA-GCAGAC
* * * * * * * *
17191834 TGAAGATGACAAATCTTATCTCCCTGAAATTACAGTG-GAGCAG-GTTAA-A-GCCGATAATCCT
125 TGAAGAAG-CAAATCTTATCT-CCTGAAGTTGCAGAGAGAGCAGACTGAAGATGGC-A-AATCTT
* *
17191895 ATCTTCCTGAAGTTGCAGTGGAG-TGGATT
186 ATCTCCCTGAAGTTGCAGTGGAGCAGG-TT
* * * * ** *** *
17191924 AAAACCCTGGATCTTATC-TCTCTGAAGTTGCAGAGAGCAGA-TCGCATCTAGTCTTATCTCCCT
1 AAAGCCATGAATCCTATCTTC-CTGAAGTTGCAGAGAGTGGATTAAAACCTAGTCTTATCTCCCT
* * * * *
17191987 AAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATC-CTCCTAAAGTTGCAGAGAGACAGAC
65 GAAGTTGCAGTAGAGCAGA-TCA--AATCAAGTCTTATCTC-CCTGAAGTTGCAGAGAG-CAGAC
* * * * * *
17192051 TGAAGATGGCAAATCTTATCTCCTTGAAGTTGCAGTG-GAGCAG-GTTAA-A-GCCGATAATCCT
125 TGAAGA-AGCAAATCTTATCTCC-TGAAGTTGCAGAGAGAGCAGACTGAAGATGGC-A-AATCTT
* * *
17192112 ATCTTCCTGAAGTTGGAGTGGAG-TGGATT
186 ATCTCCCTGAAGTTGCAGTGGAGCAGG-TT
* * * * * * * ** *
17192141 AAAACCTTGGATCTTATC-TCTCTAAAGTTACAGAGAGTAGATT-GCATCTAGTCTTATCTCCCT
1 AAAGCCATGAATCCTATCTTC-CTGAAGTTGCAGAGAGTGGATTAAAACCTAGTCTTATCTCCCT
* * * *
17192204 GAAGTTACAGTGGAGCAGACCAAGAAAGCAAGTCTTATACT-CCTGAAGTTGCAGAGAGGCAGAC
65 GAAGTTGCAGTAGAGCAGATC---AAATCAAGTCTTAT-CTCCCTGAAGTTGCAGAGA-GCAGAC
* * * ** * * *
17192268 TGAAGATGGCAAATCTTATCTCCCTGAAGTTACAGTG-GAGTGGA-TTAAAACCTTGG---ATAT
125 TGAAGA-AGCAAATCTTATCT-CCTGAAGTTGCAGAGAGAGCAGACTGAAGA---TGGCAAATCT
* * * *
17192328 TATCTCTCTAAAGTTGCAG-AGAGCAGATT
185 TATCTCCCTGAAGTTGCAGTGGAGCAGGTT
* * * * ** *
17192357 ---G-CATCAAGTCTTATCCTCCTGAAGTTGCAGAGA-TGCAGACTGAAGATGGCAAGTCTTATC
1 AAAGCCATGAA-TCCTATCTTCCTGAAGTTGCAGAGAGTG--GA-TTAA-A-ACCTAGTCTTATC
* * * * * * * * *
17192417 TCCCTGAAGTTGTAGTGGAGCAGGTTAAAGCTGATAATCCTATCTTCCTGAAGTTGCAGTGGAGC
60 TCCCTGAAGTTGCAGTAGAGCAGATCAAA--TCA-AGTCTTATCTCCCTGAAGTTGCAG-AGAGC
* *
17192482 AGACT-AAGTAAGCAAGTCTTATCCTCCTGAAGTTTCAGAGAG-GCAGACTGAAGATGGCAAATC
121 AGACTGAAG-AAGCAAATCTTAT-CTCCTGAAGTTGCAGAGAGAGCAGACTGAAGATGGCAAATC
*
17192545 TTATCTCCCTGAAGTTGCAGTGAAGCAGGTT
184 TTATCTCCCTGAAGTTGCAGTGGAGCAGGTT
*
17192576 AAAGCCGAT-AATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTC
1 AAAGCC-ATGAATCCTATCTTCCTGAAGTTGCAG-AGAGTGGATTAAAACC-TAG-TCTTATCTC
* * * * * *
17192640 TCTGAAGTTGCAG-AGAGTAGATCACATCTAA-TCTTATCTCCCTGAAGTTACAGTGGAGCTGAC
62 CCTGAAGTTGCAGTAGAGCAGATCAAATC-AAGTCTTATCTCCCTGAAGTTGCAG-AGAGCAGAC
*
17192703 T-AAGAAAGCAAGTCTTATCCTCCTGAAGTTGCAGAGAG-GCAGACTGAAGATGGCAAATCTTAT
125 TGAAG-AAGCAAATCTTAT-CTCCTGAAGTTGCAGAGAGAGCAGACTGAAGATGGCAAATCTTAT
* *
17192766 CTCCCTGAAGTTACAGTGGAG-TGGATT
188 CTCCCTGAAGTTGCAGTGGAGCAGG-TT
* * * * *
17192793 AAAACCTTGGATCTTATC-TCTCTAAAGTTGCAGAGAG
1 AAAGCCATGAATCCTATCTTC-CTGAAGTTGCAGAGAG
17192830 CAGATCGCAT
Statistics
Matches: 908, Mismatches: 144, Indels: 140
0.76 0.12 0.12
Matches are distributed among these distances:
212 4 0.00
213 38 0.04
214 55 0.06
215 14 0.02
216 31 0.03
217 566 0.62
218 121 0.13
219 12 0.01
220 11 0.01
221 23 0.03
222 24 0.03
223 5 0.01
224 4 0.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (214 bp):
AAAGCCATGAATCCTATCTTCCTGAAGTTGCAGAGAGTGGATTAAAACCTAGTCTTATCTCCCTG
AAGTTGCAGTAGAGCAGATCAAATCAAGTCTTATCTCCCTGAAGTTGCAGAGAGCAGACTGAAGA
AGCAAATCTTATCTCCTGAAGTTGCAGAGAGAGCAGACTGAAGATGGCAAATCTTATCTCCCTGA
AGTTGCAGTGGAGCAGGTT
Found at i:17192982 original size:217 final size:217
Alignment explanation
Indices: 17192759--17193211 Score: 639
Period size: 217 Copynumber: 2.1 Consensus size: 217
17192749 AAGATGGCAA
* * ** *
17192759 ATCTTATCTCCCTGAAGTTACAGTGGAGTGGATTAAAACCTTGGATCTTATCT-CTCTAAAGTTG
1 ATCTTATCTCTCTGAAGTTACAG-AGAGCAGA-TAAAACC-TAG-TCTTATCTCCT-TAAAGTTG
* * * *
17192823 CAG-AGAGCAGA-T-CG-CATCAAGTCTTATCCTCCTGAAGTTGCAGAGAGGTAGACTGAAGATG
61 CAGTAGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATG
*
17192884 GCAAATCTTATC-TCTCTGAAGTTGCAGTGGAGTAGGTTAAAGCCGATAATCCTATCTTCCTGAA
126 GCAAATCTTATCTTC-CTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAA
17192948 GTTGCAGTGGAGTGGATTAAAACCTTGG
190 GTTGCAGTGGAGTGGATTAAAACCTTGG
* * *** * * *
17192976 ATCTTATCTCTCTGAAATTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCTTGAAGTTGCAGTG
1 ATCTTATCTCTCTGAAGTTACAGAGAGCAGATAAAACCTAGTCTTATCTCCTTAAAGTTGCAGTA
17193041 GAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAA
66 GAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAA
*
17193106 TCTTATCTTCCTGAAGTTGTAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCA
131 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCA
17193171 GTGGAGTGGATTAAAACCTTGG
196 GTGGAGTGGATTAAAACCTTGG
17193193 ATCTTATCTCTCTGAAGTT
1 ATCTTATCTCTCTGAAGTT
17193212 GCGGAAAGCA
Statistics
Matches: 210, Mismatches: 20, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
213 18 0.09
214 11 0.05
215 4 0.02
216 6 0.03
217 169 0.80
218 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (217 bp):
ATCTTATCTCTCTGAAGTTACAGAGAGCAGATAAAACCTAGTCTTATCTCCTTAAAGTTGCAGTA
GAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAA
TCTTATCTTCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCA
GTGGAGTGGATTAAAACCTTGG
Found at i:17193115 original size:173 final size:171
Alignment explanation
Indices: 17191627--17193305 Score: 1032
Period size: 173 Copynumber: 9.7 Consensus size: 171
17191617 TAAGAAAGCA
* * *
17191627 AGTCTTATC-CTTCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTAT-CTCCCTGAAG
1 AGTCTTATCTCCT-TGAAGTTGCAGAGA-GCAGACT-AAGA-AGCAAGTCTTATCCT-CCTGAAG
* * * * * **
17191690 TTACAGTG-GAGCAG-GTTAA-A-GCCGATAATCCTATCTTCCTGAAGTTATAGTGGAGTGGATT
61 TTGCAGTGAG-GCAGACTGAAGATGGC-A-AATCTTATCTTCCTGAAGTTGCAGTGGAGTGGATT
* * * *
17191751 AAAACCTTGGATCTTATTTCTCTGAAGTTGTAGAGAGCAAATCGCATCA
123 AAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
* * * *
17191800 AGTTTTATCCTCC-TGAAGTTGCAGAGAGGCAGACTGAAGATGACAAATCTTAT-CTCCCTGAAA
1 AGTCTTAT-CTCCTTGAAGTTGCAGAGA-GCAGACT-AAGAAG-CAAGTCTTATCCT-CCTGAAG
* * * * *
17191863 TTACAGTG-GAGCAG-GTTAA-A-GCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATT
61 TTGCAGTGAG-GCAGACTGAAGATGGC-A-AATCTTATCTTCCTGAAGTTGCAGTGGAGTGGATT
*
17191924 AAAACCCTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
123 AAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
* * * *
17191973 AGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTAAAGTTG
1 AGTCTTATCTCCTTGAAGTTGCAG-AGAGCAGACTAAG-AAGCAAGTCTTATCCTCCTGAAGTTG
* * * *
17192038 CAGAGAGACAGACTGAAGATGGCAAATCTTATC-TCCTTGAAGTTGCAGTGGAGCAGG-TTAAAG
64 CAGTGAGGCAGACTGAAGATGGCAAATCTTATCTTCC-TGAAGTTGCAGTGGAG-TGGATTAAAA
* * * * * ** *** *
17192101 CCGAT-AATCCTATCT-TCCTGAAGTTGGAGTGGAGTGGATTAAAACCTT
127 CC-TTGGATCTTATCTCT-CTGAAGTTGCAG-AGAGCAGA-TCGCATC-T
* * * * * * * *
17192149 GGATCTTATCT-CTCTAAAGTTACAGAGAGTAGA-T-TGCATCTAGTCTTAT-CTCCCTGAAGTT
1 AG-TCTTATCTCCT-TGAAGTTGCAGAGAGCAGACTAAGAAGCAAGTCTTATCCT-CCTGAAGTT
* * ** * * *
17192210 ACAGTG-GAGCAGAC-CAAGAAAGCAAGTCTTATAC-TCCTGAAGTTGCAG-AGAG-GCAGACTG
63 GCAGTGAG-GCAGACTGAAGATGGCAAATCTTAT-CTTCCTGAAGTTGCAGTGGAGTG--GA-TT
* * * * ** *** *
17192270 AAGA---TGGCAAATCTTATCTCCCTGAAGTTACAGTGGAGTGGATTAAAACCTT
123 AAAACCTTGG---ATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-TCGCATC-T
* * * * * *
17192322 GGATATTATCT-CTCTAAAGTTGCAGAGAGCAGA-T-TGCATCAAGTCTTATCCTCCTGAAGTTG
1 AG-TCTTATCTCCT-TGAAGTTGCAGAGAGCAGACTAAGAAGCAAGTCTTATCCTCCTGAAGTTG
* * * * * * *
17192384 CAGAGATGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGG-TT-AAAG
64 CAGTGAGGCAGACTGAAGATGGCAAATCTTATCTTCCTGAAGTTGCAGTGGAG-TGGATTAAAAC
* * * * * * *
17192447 C-TGATAATCCTATCT-TCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
128 CTTG--GATCTTATCTCT-CTGAAGTTGCAG-AGAGCAGA-T-CG-CATCT
* * *
17192496 AGTCTTATCCTCC-TGAAGTTTCAGAGAGGCAGACTGAAGATGGCAAATCTTAT-CTCCCTGAAG
1 AGTCTTAT-CTCCTTGAAGTTGCAGAGA-GCAGACT-AAGA-AGCAAGTCTTATCCT-CCTGAAG
* * * * *
17192559 TTGCAGTGAAGCAG-GTTAA-A-GCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTA
61 TTGCAGTGAGGCAGACTGAAGATGGC-A-AATCTTATCTTCCTGAAGTTGCAGTGGAGTGGATTA
* * *
17192621 AAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGTAGATCACATCT
124 AAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
* * * * *
17192669 AATCTTATCTCCCTGAAGTTACAGTGGAGCTGACTAAGAAAGCAAGTCTTATCCTCCTGAAGTTG
1 AGTCTTATCTCCTTGAAGTTGCAG-AGAGCAGACTAAG-AAGCAAGTCTTATCCTCCTGAAGTTG
* * *
17192734 CAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTACAGTGGAGTGGATTAAAACC
64 CAGTGAGGCAGACTGAAGATGGCAAATCTTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACC
* *
17192799 TTGGATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCGCATCA
129 TTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
* * *
17192842 AGTCTTATCCTCC-TGAAGTTGCAGAGAGGTAGACTGAAGATGGCAAATCTTAT-CTCTCTGAAG
1 AGTCTTAT-CTCCTTGAAGTTGCAGAGA-GCAGACT-AAGA-AGCAAGTCTTATCCTC-CTGAAG
* * * * *
17192905 TTGCAGTG-GAGTAG-GTTAA-A-GCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATT
61 TTGCAGTGAG-GCAGACTGAAGATGGC-A-AATCTTATCTTCCTGAAGTTGCAGTGGAGTGGATT
*
17192966 AAAACCTTGGATCTTATCTCTCTGAAATTGCAGAGAGCAGATCGCATCT
123 AAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
*
17193015 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTG
1 AGTCTTATCTCCTTGAAGTTGCAG-AGAGCAGACTAAG-AAGCAAGTCTTATCCTCCTGAAGTTG
* * * *
17193080 CAGAGAGGCAGACTGAAGATGGCAAATCTTATCTTCCTGAAGTTGTAGTGGAGCAGG-TTAAAGC
64 CAGTGAGGCAGACTGAAGATGGCAAATCTTATCTTCCTGAAGTTGCAGTGGAG-TGGATTAAAAC
* * * * ** *** *
17193144 CGAT-AATCCTATCT-TCCTGAAGTTGCAGTGGAGTGGATTAAAACCTT
128 C-TTGGATCTTATCTCT-CTGAAGTTGCAG-AGAGCAGA-TCGCATC-T
* * * * * *
17193191 GGATCTTATCT-CTCTGAAGTTGCGGAAAGCAGA-T-CGCATCAAGTCTTATCCTCCTGAAGTTG
1 AG-TCTTATCTCCT-TGAAGTTGCAGAGAGCAGACTAAGAAGCAAGTCTTATCCTCCTGAAGTTG
* * *
17193253 CAGTGAGGCAGACTGAAGATGGCAAATCTTATCTGCTTGAAGTTGTAGTGGAG
64 CAGTGAGGCAGACTGAAGATGGCAAATCTTATCTTCCTGAAGTTGCAGTGGAG
17193306 CAGGTTAAAG
Statistics
Matches: 1225, Mismatches: 190, Indels: 182
0.77 0.12 0.11
Matches are distributed among these distances:
169 2 0.00
171 6 0.00
172 139 0.11
173 794 0.65
174 104 0.08
175 27 0.02
176 29 0.02
177 90 0.07
178 33 0.03
179 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (171 bp):
AGTCTTATCTCCTTGAAGTTGCAGAGAGCAGACTAAGAAGCAAGTCTTATCCTCCTGAAGTTGCA
GTGAGGCAGACTGAAGATGGCAAATCTTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTT
GGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
Found at i:17193165 original size:479 final size:476
Alignment explanation
Indices: 17191978--17193176 Score: 1443
Period size: 479 Copynumber: 2.5 Consensus size: 476
17191968 CATCTAGTCT
* * *
17191978 TATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCT-AAAGTTGCAGA
1 TATCTTCCTGAAGTTGCAGTGGAGCAGACTAAG-AACCAAGTCTTATCCTCCTGAAA-TTGCAGA
* * * * * *
17192042 GAGACAGACTGAAGATGGCAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATA
64 GAGGCAGACTG-ACAT-GCAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGCTAAAAGCCGATA
* * * * **** * *
17192107 ATCCTATCTTCCTGAAGTTGGAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTAAAGTTAC
127 ATCCTATCCTCCTGAAGTTGCAGTAGAGTGGATGAAAACCGCAAATCTTATCTCTCTGAAGTTGC
* *** * * *
17192172 AGAGAGTAGATTGCATCTAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACCAAGAAAGCAAGT
192 AGAGAGCAGATCAAACCTAATCCTATCTCCCTGAAGTTACAGTGGAGCAGACCAAGAAAGCAAGT
17192237 CTTATACTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTACA
257 CTTATACTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTACA
*
17192302 GTGGAGTGGATTAAAACCTTGGATATTATCTCTCTAAAGTTGCAGAGAGCAGATTGCATCAAGTC
322 GTGGAGTGGATTAAAACCTTGGATATTATCTCTCTAAAGTTGCAGAGAGCAGATCGCATCAAGTC
* * *
17192367 TTATCCTCCTGAAGTTGCAGAGATGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGTAG
387 TTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAG
*
17192432 TGGAGCAGGTTAAAGCTGATAATCC
452 TGGAGCAGGTTAAAGCCGATAATCC
* * *
17192457 TATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTTCAGAG
1 TATCTTCCTGAAGTTGCAGTGGAGCAGACTAAG-AACCAAGTCTTATCCTCCTGAAATTGCAGAG
* * *
17192522 AGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGGTTAAAGCCGATAA
65 AGGCAGACTG-ACAT-GCAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGCTAAAAGCCGATAA
* * * ** *
17192587 TCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCA
128 TCCTATCCTCCTGAAGTTGCAGTAGAGTGGATGAAAACCGCAAATCTTATCTCTCTGAAGTTGCA
* * * * * *
17192652 GAGAGTAGATCACATCTAATCTTATCTCCCTGAAGTTACAGTGGAGCTGACTAAGAAAGCAAGTC
193 GAGAGCAGATCAAACCTAATCCTATCTCCCTGAAGTTACAGTGGAGCAGACCAAGAAAGCAAGTC
*
17192717 TTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTACAG
258 TTATACTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTACAG
*
17192782 TGGAGTGGATTAAAACCTTGGATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCGCATCAAGTCT
323 TGGAGTGGATTAAAACCTTGGATATTATCTCTCTAAAGTTGCAGAGAGCAGATCGCATCAAGTCT
* *
17192847 TATCCTCCTGAAGTTGCAGAGAGGTAGACTGAAGATGGCAAATCTTATCTCTCTGAAGTTGCAGT
388 TATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGT
*
17192912 GGAGTAGGTTAAAGCCGATAATCC
453 GGAGCAGGTTAAAGCCGATAATCC
** * **
17192936 TATCTTCCTGAAGTTGCAGTGGAGTGGATTAA-AACCTTGGATCTTAT-CTCTCTGAAATTGCAG
1 TATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGAACC-AAG-TCTTATCCTC-CTGAAATTGCAG
* * * *
17192999 AGA-GCAGA-TCG-CAT-CTAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAG-C-
63 AGAGGCAGACT-GACATGCAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAG-CTAA--AAGCCG
* * * **
17193058 A-AGTCTTATCCTCCTGAAGTTGCAG-AGAG-GCAGACTGAAGATGGCAAATCTTATCT-TCCTG
124 ATAATCCTATCCTCCTGAAGTTGCAGTAGAGTG--GA-TGAAAACCGCAAATCTTATCTCT-CTG
* * * * * *
17193119 AAGTTGTAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAG
185 AAGTTGCAG-AGAGCAGATCAAA-CC--TAATCCTATCTCCCTGAAGTTACAGTGGAG
17193177 TGGATTAAAA
Statistics
Matches: 642, Mismatches: 62, Indels: 32
0.87 0.08 0.04
Matches are distributed among these distances:
472 1 0.00
473 3 0.00
474 54 0.08
475 28 0.04
476 11 0.02
477 8 0.01
478 10 0.02
479 525 0.82
480 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (476 bp):
TATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGAACCAAGTCTTATCCTCCTGAAATTGCAGAGA
GGCAGACTGACATGCAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAGCTAAAAGCCGATAATCC
TATCCTCCTGAAGTTGCAGTAGAGTGGATGAAAACCGCAAATCTTATCTCTCTGAAGTTGCAGAG
AGCAGATCAAACCTAATCCTATCTCCCTGAAGTTACAGTGGAGCAGACCAAGAAAGCAAGTCTTA
TACTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTACAGTGG
AGTGGATTAAAACCTTGGATATTATCTCTCTAAAGTTGCAGAGAGCAGATCGCATCAAGTCTTAT
CCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGA
GCAGGTTAAAGCCGATAATCC
Found at i:17193201 original size:44 final size:44
Alignment explanation
Indices: 17192410--17193388 Score: 218
Period size: 44 Copynumber: 22.5 Consensus size: 44
17192400 AGATGGCAAG
* * * *
17192410 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGCTGATAA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGGTTAAAACCGATAA
* ** * *
17192454 TCCTATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC-A-AG
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGGTTAA--AACCGATAA
* * * * * * **
17192498 TCTTATCCTCCTGAAGTTTCAG-AGAGGCAGACTGAAGATGGCA-AA
1 TCTTATCTTCCTGAAGTTGCAGTGGA-GCAG-GTTAAAACCG-ATAA
* * *
17192543 TCTTATCTCCCTGAAGTTGCAGTGAAGCAGGTTAAAGCCGATAA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGGTTAAAACCGATAA
* * *
17192587 TCCTATCTTCCTGAAGTTGCAGTGGAG-TGGATTAAAACC-TTAGA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGG-TTAAAACCGATA-A
* * * * * *
17192631 TCTTATC-TCTCTGAAGTTGCAG-AGAGTA-GATCACATC--TAA
1 TCTTATCTTC-CTGAAGTTGCAGTGGAGCAGGTTAAAACCGATAA
* * * ** * *
17192671 TCTTATCTCCCTGAAGTTACAGTGGAGCTGACTAAGAA-AGCA-AG
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGGTTAA-AACCG-ATAA
* * * * * **
17192715 TCTTATCCTCCTGAAGTTGCAG-AGAGGCAGACTGAAGATGGCA-AA
1 TCTTATCTTCCTGAAGTTGCAGTGGA-GCAG-GTTAAAACCG-ATAA
* * * * *
17192760 TCTTATCTCCCTGAAGTTACAGTGGAG-TGGATTAAAACC-TTGGA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGG-TTAAAACCGAT-AA
* * * *** * *
17192804 TCTTATC-TCTCTAAAGTTGCAG-AGAGCA-GATCGCATC-A-AG
1 TCTTATCTTC-CTGAAGTTGCAGTGGAGCAGGTTAAAACCGATAA
* * * * * * **
17192844 TCTTATCCTCCTGAAGTTGCAG-AGAGGTAGACTGAAGATGGCA-AA
1 TCTTATCTTCCTGAAGTTGCAGTGGA-GCAG-GTTAAAACCG-ATAA
* *
17192889 TCTTATC-TCTCTGAAGTTGCAGTGGAGTAGGTTAAAGCCGATAA
1 TCTTATCTTC-CTGAAGTTGCAGTGGAGCAGGTTAAAACCGATAA
* * * *
17192933 TCCTATCTTCCTGAAGTTGCAGTGGAG-TGGATTAAAACC-TTGGA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGG-TTAAAACCGAT-AA
* * * *** * *
17192977 TCTTATC-TCTCTGAAATTGCAG-AGAGCA-GATCGCATC--TAG
1 TCTTATCTTC-CTGAAGTTGCAGTGGAGCAGGTTAAAACCGATAA
** * *
17193017 TCTTATC-TCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGC-A-AG
1 TCTTATCTTCC-TGAAGTTGCAGTGGAGCAGGTTAA--AACCGATAA
* * * * * **
17193061 TCTTATCCTCCTGAAGTTGCAG-AGAGGCAGACTGAAGATGGCA-AA
1 TCTTATCTTCCTGAAGTTGCAGTGGA-GCAG-GTTAAAACCG-ATAA
* *
17193106 TCTTATCTTCCTGAAGTTGTAGTGGAGCAGGTTAAAGCCGATAA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGGTTAAAACCGATAA
* * * *
17193150 TCCTATCTTCCTGAAGTTGCAGTGGAG-TGGATTAAAACC-TTGGA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGG-TTAAAACCGAT-AA
* * *** * *
17193194 TCTTATC-TCTCTGAAGTTGC-G-GAAAGCA-GATCGCATC-A-AG
1 TCTTATCTTC-CTGAAGTTGCAGTG-GAGCAGGTTAAAACCGATAA
* * * * **
17193234 TCTTATCCTCCTGAAGTTGCAGT-GAGGCAGACTGAAGATGGCA-AA
1 TCTTATCTTCCTGAAGTTGCAGTGGA-GCAG-GTTAAAACCG-ATAA
* * * **
17193279 TCTTATCTGCTTGAAGTTGTAGTGGAGCAGGTTAAAGTCGATAA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGGTTAAAACCGATAA
* * * ** *
17193323 TCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTTGA
1 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGGTTAAAACCGATAA
17193367 TCTTATCTAT-CTGAAGTTGCAG
1 TCTTATCT-TCCTGAAGTTGCAG
17193389 AGAGCAGATC
Statistics
Matches: 668, Mismatches: 196, Indels: 142
0.66 0.19 0.14
Matches are distributed among these distances:
39 1 0.00
40 77 0.12
41 22 0.03
42 17 0.03
43 50 0.07
44 354 0.53
45 137 0.21
46 10 0.01
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (44 bp):
TCTTATCTTCCTGAAGTTGCAGTGGAGCAGGTTAAAACCGATAA
Found at i:17193224 original size:217 final size:217
Alignment explanation
Indices: 17192840--17193266 Score: 743
Period size: 217 Copynumber: 2.0 Consensus size: 217
17192830 CAGATCGCAT
*
17192840 CAAGTCTTATCCTCCTGAAGTTGCAGAGAGGTAGACTGAAGATGGCAAATCTTATCTCTCTGAAG
1 CAAGTCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCTCTGAAG
*
17192905 TTGCAGTGGAGTAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
66 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
* *
17192970 CCTTGGATCTTATCTCTCTGAAATTGCAGAGAGCAGATCGCATCTAGTCTTAT-CTCCTTGAAGT
131 CCTTGGATCTTATCTCTCTGAAATTGCAGAAAGCAGATCGCATCAAGTCTTATCCTCC-TGAAGT
17193034 TGCAGTG-GAGCAGACTAAGTAAG
195 TGCAGTGAG-GCAGACTAAGTAAG
17193057 CAAGTCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCT-TCCTGAA
1 CAAGTCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCT-CTGAA
*
17193121 GTTGTAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAA
65 GTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAA
* *
17193186 ACCTTGGATCTTATCTCTCTGAAGTTGCGGAAAGCAGATCGCATCAAGTCTTATCCTCCTGAAGT
130 ACCTTGGATCTTATCTCTCTGAAATTGCAGAAAGCAGATCGCATCAAGTCTTATCCTCCTGAAGT
17193251 TGCAGTGAGGCAGACT
195 TGCAGTGAGGCAGACT
17193267 GAAGATGGCA
Statistics
Matches: 200, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
216 1 0.00
217 194 0.97
218 5 0.03
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (217 bp):
CAAGTCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCTCTGAAG
TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
CCTTGGATCTTATCTCTCTGAAATTGCAGAAAGCAGATCGCATCAAGTCTTATCCTCCTGAAGTT
GCAGTGAGGCAGACTAAGTAAG
Found at i:17193388 original size:217 final size:217
Alignment explanation
Indices: 17192844--17193358 Score: 720
Period size: 217 Copynumber: 2.4 Consensus size: 217
17192834 TCGCATCAAG
* * * *
17192844 TCTTATCCTCCTGAAGTTGCAGAGAGGTAGACTGAAGATGGCAAATCTTATCTCTCTGAAGTTGC
1 TCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTAAAGATCGCAAATCTTATCTCCCTGAAGTTGC
*
17192909 AGTGGAGTAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTT
66 AGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTT
* *
17192974 GGATCTTATCTCTCTGAAATTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCTTGAAGTTGCAG
131 GGATCTTATCTCTCTGAAATTGCAGAAAGCAGATCGCATCAAGTCTTATCTCCTTGAAGTTGCAG
*
17193039 TGGAGCAGACTAAGTAAGCAAG
196 TGGAGCAGACTAAGTAAGCAAA
* * * *
17193061 TCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTTCCTGAAGTTGT
1 TCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTAAAGATCGCAAATCTTATCTCCCTGAAGTTGC
17193126 AGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTT
66 AGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTT
* *
17193191 GGATCTTATCTCTCTGAAGTTGCGGAAAGCAGATCGCATCAAGTCTTATCCTCC-TGAAGTTGCA
131 GGATCTTATCTCTCTGAAATTGCAGAAAGCAGATCGCATCAAGTCTTAT-CTCCTTGAAGTTGCA
*
17193255 GT-GAGGCAGACTGAAG-ATGGCAAA
195 GTGGA-GCAGACT-AAGTA-AGCAAA
* * * ** *
17193279 TCTTAT-CTGCTTGAAGTTGTAGTG-GAGCAGGTTAAAG-TCG-ATAATCCTATCTCCCTGAAGT
1 TCTTATCCT-CCTGAAGTTGCAGAGAG-GCAGACTAAAGATCGCA-AATCTTATCTCCCTGAAGT
*
17193340 TGCAGTGGAGCAGATTAAA
63 TGCAGTGGAGCAGGTTAAA
17193359 ACCTTTGATC
Statistics
Matches: 269, Mismatches: 22, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
216 3 0.01
217 229 0.85
218 37 0.14
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (217 bp):
TCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTAAAGATCGCAAATCTTATCTCCCTGAAGTTGC
AGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTT
GGATCTTATCTCTCTGAAATTGCAGAAAGCAGATCGCATCAAGTCTTATCTCCTTGAAGTTGCAG
TGGAGCAGACTAAGTAAGCAAA
Found at i:17193421 original size:40 final size:40
Alignment explanation
Indices: 17193326--17193521 Score: 133
Period size: 40 Copynumber: 4.5 Consensus size: 40
17193316 TCGATAATCC
* * * * *
17193326 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTTGATCT
1 TATCTCCCTGAAGTTGCAG-AGAGCAGA-TCACATC-TAG-TCT
** *
17193370 TATCTATCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCT
1 TATCTCCCTGAAGTTGCAGAGAGCAGATCACATCTAGTCT
* *
17193410 TATCTCCCTGAAGTTGCA-ATGGAGCGGATTAGAACCACAAATCTTGGATCT
1 TATCTCCCTGAAGTTGCAGA--GAGC-----AG-ATCAC--ATC-TAG-TCT
*
17193461 TATCTCTCTGAAGTTGCAGAGAGCAGATCACATCTAGTCT
1 TATCTCCCTGAAGTTGCAGAGAGCAGATCACATCTAGTCT
*
17193501 TATCTCCCTGAAGTTGTAGAG
1 TATCTCCCTGAAGTTGCAGAG
17193522 GAGTAGATTG
Statistics
Matches: 121, Mismatches: 18, Indels: 30
0.72 0.11 0.18
Matches are distributed among these distances:
39 1 0.01
40 41 0.34
41 8 0.07
42 6 0.05
43 7 0.06
44 21 0.17
45 2 0.02
46 2 0.02
47 3 0.02
49 3 0.02
50 6 0.05
51 20 0.17
52 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (40 bp):
TATCTCCCTGAAGTTGCAGAGAGCAGATCACATCTAGTCT
Found at i:17193427 original size:346 final size:347
Alignment explanation
Indices: 17191798--17193396 Score: 1445
Period size: 346 Copynumber: 4.6 Consensus size: 347
17191788 CAAATCGCAT
* * * *
17191798 CAAGTTTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAAA
1 CAAGTCTTATCCTCCTGAAGTTGCAGAGAAGCAGACTG-ACATG-CAAATCTTATCTCCCTGAAG
* * *
17191863 TTACAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
64 TTGCAGTGGAGCAGCTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGAGGATTAAAA
* * * *** * * *
17191928 CCCTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATC-TAG-TCTTATCTCCCTAAAG
129 CCAT-AATCTTATCTCCCTGAAGTTGCAGAGAGCAGATAAAACCTTTGATCTTATCTCCCTGAAG
* * * *
17191991 TTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTAAAGTTGCAGAGAGACAGACTGAAG
193 TTGCAGTAGAGCAGACTAAGAAAGCAAGTCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAG
*
17192056 ATGGCAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTG
258 ATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTG
* **
17192121 AAGTTGGAGTGGAGTGGATTAAAAC
323 AAGTTGCAGTGGAGCAGATTAAAAC
** * * * * * *
17192146 CTTGGATCTTAT-CTCTCTAAAGTTACAGAG-AGTAGATTG-CAT-CTAGTCTTATCTCCCTGAA
1 C-AAG-TCTTATCCTC-CTGAAGTTGCAGAGAAGCAGACTGACATGCAAATCTTATCTCCCTGAA
* ** * * *
17192207 GTTACAGTGGAGCAGACCAAGAAAG-C-A-AGTCTTATAC-TCCTGAAGTTGCAG-AGAG-GCAG
63 GTTGCAGTGGAGCAG--C-TTAAAGCCGATAATCCTAT-CTTCCTGAAGTTGCAGTGGAGAG--G
* ** * * ** * *
17192266 ACTGAAGATGGCA-AATCTTATCTCCCTGAAGTTACAGTGGAGTGGATTAAAACCTTGGATATTA
122 A-TTAA-A-ACCATAATCTTATCTCCCTGAAGTTGCAG-AGAGCAGA-TAAAACCTTTGATCTTA
* * * * * *
17192330 TCTCTCTAAAGTTGCAG-AGAGCAGA-T-TG-CATCAAGTCTTATCCTCCTGAAGTTGCAGAGAT
182 TCTCCCTGAAGTTGCAGTAGAGCAGACTAAGAAAGCAAGTCTTATCCTCCTGAAGTTGCAGAGAG
* * *
17192391 GCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGCTGATAATC
247 GCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATC
* *
17192456 CTATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG
312 CTATCTTCCTGAAGTTGCAGTGGAGCAGATTAA--AAC
* * *
17192494 CAAGTCTTATCCTCCTGAAGTTTCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAG
1 CAAGTCTTATCCTCCTGAAGTTGCAGAGAAGCAGACTG-ACAT-GCAAATCTTATCTCCCTGAAG
* * *
17192559 TTGCAGTGAAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
64 TTGCAGTGGAGCAGCTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGAGGATTAAAA
* * * * * * *
17192624 CCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGTAGAT--CACATCTAATCTTATCTCCCTGAAG
129 CCATA-ATCTTATCTCCCTGAAGTTGCAGAGAGCAGATAAAACCTTTGATCTTATCTCCCTGAAG
* * *
17192687 TTACAGTGGAGCTGACTAAGAAAGCAAGTCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAG
193 TTGCAGTAGAGCAGACTAAGAAAGCAAGTCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAG
* * * * * *
17192752 ATGGCAAATCTTATCTCCCTGAAGTTACAGTGGAG-TGGATTAAAACC-TTGGATCTTATC-TCT
258 ATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGG-TTAAAGCCGAT-AATCCTATCTTC-
* * *** *
17192814 CTAAAGTTGCAG-AGAGCAGA-TCGCAT
320 CTGAAGTTGCAGTGGAGCAGATTAAAAC
* * * *
17192840 CAAGTCTTATCCTCCTGAAGTTGCAGAGAGGTAGACTGAAGATGGCAAATCTTATCTCTCTGAAG
1 CAAGTCTTATCCTCCTGAAGTTGCAGAGAAGCAGACTG-ACAT-GCAAATCTTATCTCCCTGAAG
* * *
17192905 TTGCAGTGGAGTAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
64 TTGCAGTGGAGCAGCTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGAGGATTAAAA
* * * * *** * * *
17192970 CCTTGGATCTTATCTCTCTGAAATTGCAGAGAGCAGATCGCATC-TAG-TCTTATCTCCTTGAAG
129 CCAT-AATCTTATCTCCCTGAAGTTGCAGAGAGCAGATAAAACCTTTGATCTTATCTCCCTGAAG
* *
17193033 TTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAG
193 TTGCAGTAGAGCAGACTAAGAAAGCAAGTCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAG
* *
17193098 ATGGCAAATCTTATCTTCCTGAAGTTGTAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTG
258 ATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTG
**
17193163 AAGTTGCAGTGGAGTGGATTAAAAC
323 AAGTTGCAGTGGAGCAGATTAAAAC
** * *
17193188 CTTGGATCTTAT-CTCTCTGAAGTTGCGGA-AAGCAGA-TCG-CAT-CAAGTCTTATC-CTCCTG
1 C-AAG-TCTTATCCTC-CTGAAGTTGCAGAGAAGCAGACT-GACATGCAAATCTTATCTC-CCTG
* * * * * *
17193247 AAGTTGCAGT-GAGGCAGACTGAAGATGGC-A-AATCTTATCTGCTTGAAGTTGTAGTGGAGCAG
61 AAGTTGCAGTGGA-GCAG-CTTAA-A-GCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAG-AG
* * * *
17193309 G-TTAAAGTCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTTGATCTTAT
121 GATTAAA-ACCATAATCTTATCTCCCTGAAGTTGCAG-AGAGCAGA-TAAAACCTTTGATCTTAT
**
17193373 CTATCTGAAGTTGCAG-AGAGCAGA
183 CTCCCTGAAGTTGCAGTAGAGCAGA
17193397 TCGCATCTAG
Statistics
Matches: 1015, Mismatches: 174, Indels: 123
0.77 0.13 0.09
Matches are distributed among these distances:
343 1 0.00
344 6 0.01
345 79 0.08
346 531 0.52
347 51 0.05
348 32 0.03
349 62 0.06
350 197 0.19
351 52 0.05
352 3 0.00
353 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (347 bp):
CAAGTCTTATCCTCCTGAAGTTGCAGAGAAGCAGACTGACATGCAAATCTTATCTCCCTGAAGTT
GCAGTGGAGCAGCTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGAGGATTAAAACC
ATAATCTTATCTCCCTGAAGTTGCAGAGAGCAGATAAAACCTTTGATCTTATCTCCCTGAAGTTG
CAGTAGAGCAGACTAAGAAAGCAAGTCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATG
GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAG
TTGCAGTGGAGCAGATTAAAAC
Found at i:17193433 original size:84 final size:84
Alignment explanation
Indices: 17193153--17193530 Score: 336
Period size: 91 Copynumber: 4.4 Consensus size: 84
17193143 CCGATAATCC
* ** * *
17193153 TATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCGGAA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAG
* *
17193218 AGCAGATCGCATCAAGTCT
66 AGCAGATCACATCTAGTCT
* *
17193237 TATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGA---TGGCAAATCTTATCTGCT-TGAAGT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAAAACCTTGG---ATCTTATCT-CTCTGAAGT
* * * * * * *
17193296 TGTAGTGGAGCAGGTTAAAGTCGATAATCC
59 TGCAG-AGAGCAGATCACA-TC--TAGTCT
* *
17193326 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTTGATCTTATCTATCTGAAGTTGCAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAG
*
17193391 AGCAGATCGCATCTAGTCT
66 AGCAGATCACATCTAGTCT
* *
17193410 TATCTCCCTGAAGTTGCAATGGAGCGGATTAGAACCACAAATCTTGGATCTTATCTCTCTGAAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTA-AA--AC----CTTGGATCTTATCTCTCTGAAGT
17193475 TGCAGAGAGCAGATCACATCTAGTCT
59 TGCAGAGAGCAGATCACATCTAGTCT
* * *
17193501 TATCTCCCTGAAGTTGTAGAGGAGTAGATT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT
17193531 GAAGCACTAG
Statistics
Matches: 232, Mismatches: 38, Indels: 41
0.75 0.12 0.13
Matches are distributed among these distances:
82 3 0.01
83 2 0.01
84 54 0.23
85 24 0.10
86 11 0.05
87 13 0.06
88 23 0.10
89 26 0.11
90 3 0.01
91 73 0.31
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (84 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAG
AGCAGATCACATCTAGTCT
Found at i:17194941 original size:27 final size:24
Alignment explanation
Indices: 17194893--17194950 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
17194883 GTCCTTTTTC
* *
17194893 ATTTTCTTTATTTTTTTATTAATT
1 ATTTTTTTTATTTTTATATTAATT
17194917 AGTTTTTTTTATTTTTCATATTTAATT
1 A-TTTTTTTTATTTTT-ATA-TTAATT
17194944 ATTTTTT
1 ATTTTTT
17194951 AAAAATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 1 0.03
25 13 0.45
26 8 0.28
27 7 0.24
ACGTcount: A:0.21, C:0.03, G:0.02, T:0.74
Consensus pattern (24 bp):
ATTTTTTTTATTTTTATATTAATT
Found at i:17195220 original size:2 final size:2
Alignment explanation
Indices: 17195209--17195247 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
17195199 ACACCTATTT
* *
17195209 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TG TT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
17195248 AATTCTATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:17195435 original size:13 final size:12
Alignment explanation
Indices: 17195411--17195449 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
17195401 TCATGGATTA
17195411 TTGTTT-TTTAT
1 TTGTTTATTTAT
17195422 TTCGTTTATTTAT
1 TT-GTTTATTTAT
17195435 TTGTTTATATTAT
1 TTGTTTAT-TTAT
17195448 TT
1 TT
17195450 TATGCCATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.08
12 10 0.40
13 13 0.52
ACGTcount: A:0.15, C:0.03, G:0.08, T:0.74
Consensus pattern (12 bp):
TTGTTTATTTAT
Found at i:17205318 original size:2 final size:2
Alignment explanation
Indices: 17205311--17205335 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
17205301 TGTCCAAATC
17205311 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
17205336 AAAGCAATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:17206874 original size:13 final size:13
Alignment explanation
Indices: 17206853--17206890 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
17206843 TATAATGTAT
17206853 TTAAATTTTAATA
1 TTAAATTTTAATA
*
17206866 TTCAATTTTAATA
1 TTAAATTTTAATA
17206879 TTAAATTGTTAA
1 TTAAATT-TTAA
17206891 AAATAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 18 0.82
14 4 0.18
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (13 bp):
TTAAATTTTAATA
Found at i:17207829 original size:13 final size:14
Alignment explanation
Indices: 17207811--17207839 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
17207801 TTTGACAAAT
17207811 TTTTTTAAAA-TTA
1 TTTTTTAAAAGTTA
17207824 TTTTTTAAAAGTTA
1 TTTTTTAAAAGTTA
17207838 TT
1 TT
17207840 ATTAGTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (14 bp):
TTTTTTAAAAGTTA
Found at i:17209272 original size:23 final size:23
Alignment explanation
Indices: 17209246--17209289 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
17209236 CATTTAACAA
17209246 ATTTTTAAAAAAATTAAAAATTT
1 ATTTTTAAAAAAATTAAAAATTT
*
17209269 ATTTTTAAAAATATTAAAAAT
1 ATTTTTAAAAAAATTAAAAAT
17209290 CATAAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
ATTTTTAAAAAAATTAAAAATTT
Found at i:17209315 original size:7 final size:7
Alignment explanation
Indices: 17209303--17209328 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
17209293 AAAAAATATT
17209303 TTTAAAA
1 TTTAAAA
17209310 TTTAAAA
1 TTTAAAA
17209317 TTTAAAA
1 TTTAAAA
17209324 TTTAA
1 TTTAA
17209329 TTAAATACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
TTTAAAA
Found at i:17214622 original size:2 final size:2
Alignment explanation
Indices: 17214615--17214650 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
17214605 AAAGGAATTA
17214615 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17214651 TAAAAAGGGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:17217169 original size:14 final size:14
Alignment explanation
Indices: 17217150--17217198 Score: 71
Period size: 14 Copynumber: 3.5 Consensus size: 14
17217140 TTGTTTCACT
*
17217150 GAAAATGGCTTCCA
1 GAAAATGGCTTCTA
17217164 GAAAATGGCTTCTA
1 GAAAATGGCTTCTA
**
17217178 GAAAATGATTTCTA
1 GAAAATGGCTTCTA
17217192 GAAAATG
1 GAAAATG
17217199 AATTACTTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (14 bp):
GAAAATGGCTTCTA
Found at i:17231114 original size:13 final size:12
Alignment explanation
Indices: 17231092--17231125 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
17231082 TCATGAGAAA
17231092 TTTCTTTATCCT
1 TTTCTTTATCCT
17231104 TTTCTTTTATCCT
1 TTTC-TTTATCCT
*
17231117 TTTATTTAT
1 TTTCTTTAT
17231126 AGTCCGTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTCTTTATCCT
Found at i:17239876 original size:96 final size:94
Alignment explanation
Indices: 17239713--17239907 Score: 363
Period size: 96 Copynumber: 2.1 Consensus size: 94
17239703 CACCTTTCTC
17239713 TCTCTCTCTCTCTTATAGTTTAAGTAGGAGTTGTATTTTCTATTAAATTATTATTATTTAATCAG
1 TCTCTCTCTCTCTTATAGTTTAAGTAGGAGTTGTATTTTCTATTAAATTATTATTATTTAATCAG
17239778 GACTTATTCAAGCATAACTCTTGTACTATAT
66 GACTTATTCAAGCATAACTCTTGTACT-T-T
*
17239809 TCTCTCTCTCTCTTATAGTTTAAGTAGGAGTTGTATTTTCTATTAAATTATTATTATTTAATTAG
1 TCTCTCTCTCTCTTATAGTTTAAGTAGGAGTTGTATTTTCTATTAAATTATTATTATTTAATCAG
17239874 GACTTATTCAAGCATAACTCTTGTACTTT
66 GACTTATTCAAGCATAACTCTTGTACTTT
17239903 TCTCT
1 TCTCT
17239908 ATAAGTAGAG
Statistics
Matches: 98, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
94 6 0.06
95 1 0.01
96 91 0.93
ACGTcount: A:0.27, C:0.15, G:0.10, T:0.48
Consensus pattern (94 bp):
TCTCTCTCTCTCTTATAGTTTAAGTAGGAGTTGTATTTTCTATTAAATTATTATTATTTAATCAG
GACTTATTCAAGCATAACTCTTGTACTTT
Found at i:17241702 original size:27 final size:27
Alignment explanation
Indices: 17241680--17241743 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
17241670 AGAAAACCAC
17241680 TACCATTTAACTTCTCTATAAAAAAAA
1 TACCATTTAACTTCTCTATAAAAAAAA
* **
17241707 TGCGTTTTAACTTCTCTATAAAAAAAA
1 TACCATTTAACTTCTCTATAAAAAAAA
17241734 TGACCTATTT
1 T-ACC-ATTT
17241744 CCTTAAATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
27 25 0.86
28 1 0.03
29 3 0.10
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.38
Consensus pattern (27 bp):
TACCATTTAACTTCTCTATAAAAAAAA
Found at i:17250718 original size:18 final size:19
Alignment explanation
Indices: 17250695--17250736 Score: 77
Period size: 18 Copynumber: 2.3 Consensus size: 19
17250685 ATTAATTTTG
17250695 ATCAATCAAAATTAAATT-
1 ATCAATCAAAATTAAATTA
17250713 ATCAATCAAAATTAAATTA
1 ATCAATCAAAATTAAATTA
17250732 ATCAA
1 ATCAA
17250737 ATTAATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 18 0.78
19 5 0.22
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (19 bp):
ATCAATCAAAATTAAATTA
Found at i:17251296 original size:53 final size:55
Alignment explanation
Indices: 17251192--17251297 Score: 146
Period size: 53 Copynumber: 2.0 Consensus size: 55
17251182 AAATTTATTA
* *
17251192 TTAAATTAAATTTAATACTTATCTTATAAATAAATATTCTATTAATATAATATAT
1 TTAAATTAAATCTAATACTTATCTTATAAATAAATATTATATTAATATAATATAT
* *
17251247 TTAATATTAAATCTAATACTTAT-TT-T-GATAAATATTATATTAATTTAATAT
1 TTAA-ATTAAATCTAATACTTATCTTATAAATAAATATTATATTAATATAATAT
17251298 TAAAGTGATT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
53 22 0.48
54 1 0.02
55 6 0.13
56 17 0.37
ACGTcount: A:0.45, C:0.05, G:0.01, T:0.49
Consensus pattern (55 bp):
TTAAATTAAATCTAATACTTATCTTATAAATAAATATTATATTAATATAATATAT
Found at i:17259184 original size:24 final size:24
Alignment explanation
Indices: 17259157--17259208 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
17259147 TTAGTAAGTC
*
17259157 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
17259181 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
17259205 AAAT
1 AAAT
17259209 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:17267654 original size:34 final size:34
Alignment explanation
Indices: 17267581--17267668 Score: 104
Period size: 34 Copynumber: 2.6 Consensus size: 34
17267571 GTAGGATTTG
* *
17267581 TTCTGATATGATATATGTTTCTAGAAATATTACA
1 TTCTGATATGATATATGTATCTAGAAATATGACA
* * * * *
17267615 ATCTGATTTGATATATGTATCTGGTAATGTGACA
1 TTCTGATATGATATATGTATCTAGAAATATGACA
*
17267649 TTCTGATATGATATTTGTAT
1 TTCTGATATGATATATGTAT
17267669 ATTTGTTCGT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.31, C:0.08, G:0.16, T:0.45
Consensus pattern (34 bp):
TTCTGATATGATATATGTATCTAGAAATATGACA
Found at i:17270370 original size:25 final size:25
Alignment explanation
Indices: 17270310--17270428 Score: 80
Period size: 25 Copynumber: 4.8 Consensus size: 25
17270300 ATAAGAGCCG
*
17270310 TAATCAGGAAGCTCAAGCGAACCAA
1 TAATCAGGAAGCTCAAGAGAACCAA
* ** *
17270335 T-ATCAGGAAGCTCCAGAGAGTCAT
1 TAATCAGGAAGCTCAAGAGAACCAA
* *
17270359 TAATCAGGAAGCTCATGAGAGCCAA
1 TAATCAGGAAGCTCAAGAGAACCAA
* * * ** * *
17270384 TTATCGGGAAACTCGTGAGAGCTAAA
1 TAATCAGGAAGCTCAAGAGAAC-CAA
*
17270410 TAA-CCGGAAGCTCAAGAGA
1 TAATCAGGAAGCTCAAGAGA
17270429 GCCGCATGTC
Statistics
Matches: 73, Mismatches: 19, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
24 19 0.26
25 50 0.68
26 4 0.05
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (25 bp):
TAATCAGGAAGCTCAAGAGAACCAA
Found at i:17277985 original size:49 final size:49
Alignment explanation
Indices: 17277890--17278029 Score: 158
Period size: 49 Copynumber: 2.8 Consensus size: 49
17277880 CATATAACGA
* **
17277890 GAAGCTCATGTGAGCCATGTAAGGGGAAGCTCATAAGAGCC-GTAATCAG
1 GAAGCTCATGTGAGCCA-ATATCGGGAAGCTCATAAGAGCCAGTAATCAG
* *
17277939 GAAGCTTATGTGAGCCAATATCGGGAAGCTC-TAGAGAGCCATTAATCAG
1 GAAGCTCATGTGAGCCAATATCGGGAAGCTCATA-AGAGCCAGTAATCAG
* ** *
17277988 GCAGCTCATAAGAGCTAATTATCGGGAAGCTCATAAGAGCCA
1 GAAGCTCATGTGAGCCAA-TATCGGGAAGCTCATAAGAGCCA
17278030 AATAACAGAA
Statistics
Matches: 77, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
47 2 0.03
48 17 0.22
49 36 0.47
50 20 0.26
51 2 0.03
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (49 bp):
GAAGCTCATGTGAGCCAATATCGGGAAGCTCATAAGAGCCAGTAATCAG
Found at i:17278001 original size:25 final size:24
Alignment explanation
Indices: 17277914--17278029 Score: 108
Period size: 25 Copynumber: 4.8 Consensus size: 24
17277904 CCATGTAAGG
* *
17277914 GGAAGCTCATAAGAGCCGTAATCA
1 GGAAGCTCATAAGAGCCATTATCA
* ** * *
17277938 GGAAGCTTATGTGAGCCAATATCG
1 GGAAGCTCATAAGAGCCATTATCA
17277962 GGAAGCTC-TAGAGAGCCATTAATCA
1 GGAAGCTCATA-AGAGCCATT-ATCA
* * *
17277987 GGCAGCTCATAAGAGCTAATTATCG
1 GGAAGCTCATAAGAGC-CATTATCA
17278012 GGAAGCTCATAAGAGCCA
1 GGAAGCTCATAAGAGCCA
17278030 AATAACAGAA
Statistics
Matches: 71, Mismatches: 17, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
23 1 0.01
24 32 0.45
25 33 0.46
26 5 0.07
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (24 bp):
GGAAGCTCATAAGAGCCATTATCA
Found at i:17278044 original size:50 final size:49
Alignment explanation
Indices: 17277913--17278077 Score: 149
Period size: 50 Copynumber: 3.3 Consensus size: 49
17277903 GCCATGTAAG
* * **
17277913 GGGAAGCTCATAAGAGCC-GTAATCAGGAAGCTTATGTGAGCCAATATC
1 GGGAAGCTCATAAGAGCCAATAATCAGGAAGCTCATAAGAGCCAATATC
* * *
17277961 GGGAAGCTC-TAGAGAGCCATTAATCAGGCAGCTCATAAGAGCTAATTATC
1 GGGAAGCTCATA-AGAGCCAATAATCAGGAAGCTCATAAGAGCCAA-TATC
* * *
17278011 GGGAAGCTCATAAGAGCCAAATAA-CAGAAAGCTCA-AGAAAACCATATATC
1 GGGAAGCTCATAAGAGCC-AATAATCAGGAAGCTCATA-AGAGCCA-ATATC
* *
17278061 GAGATGCTCATAAGAGC
1 GGGAAGCTCATAAGAGC
17278078 TAAATAACGA
Statistics
Matches: 96, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
47 2 0.02
48 15 0.16
49 21 0.22
50 51 0.53
51 7 0.07
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (49 bp):
GGGAAGCTCATAAGAGCCAATAATCAGGAAGCTCATAAGAGCCAATATC
Found at i:17278088 original size:25 final size:25
Alignment explanation
Indices: 17277883--17278094 Score: 80
Period size: 25 Copynumber: 8.6 Consensus size: 25
17277873 TTTGTGTCAT
** *
17277883 ATAACGAGAAGCTCATGTGAGCCAT
1 ATAACGAGAAGCTCATAAGAGCCAA
* * * *
17277908 GTAAGGGGAAGCTCATAAGAGCCGTA
1 ATAACGAGAAGCTCATAAGAGCC-AA
* * **
17277934 ATCA-G-GAAGCTTATGTGAGCC-A
1 ATAACGAGAAGCTCATAAGAGCCAA
* *
17277956 ATATCGGGAAGCTC-TAGAGAGCC-A
1 ATAACGAGAAGCTCATA-AGAGCCAA
* * *
17277980 TTAATC-AGGCAGCTCATAAGAGCTAA
1 ATAA-CGA-GAAGCTCATAAGAGCCAA
* * *
17278006 TTATCGGGAAGCTCATAAGAGCCAA
1 ATAACGAGAAGCTCATAAGAGCCAA
* * *
17278031 ATAAC-AGAAAGCTCA-AGAAAACCAT
1 ATAACGAG-AAGCTCATA-AGAGCCAA
* * *
17278056 ATATCGAGATGCTCATAAGAGCTAA
1 ATAACGAGAAGCTCATAAGAGCCAA
*
17278081 ATAACGAGATGCTC
1 ATAACGAGAAGCTC
17278095 TTACGACTTG
Statistics
Matches: 135, Mismatches: 39, Indels: 26
0.68 0.19 0.13
Matches are distributed among these distances:
22 3 0.02
23 2 0.01
24 29 0.21
25 90 0.67
26 11 0.08
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (25 bp):
ATAACGAGAAGCTCATAAGAGCCAA
Found at i:17279624 original size:21 final size:21
Alignment explanation
Indices: 17279580--17279626 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
17279570 CAAGCCCAGG
17279580 GCCTCC-C-CGCGTGTGCTAC
1 GCCTCCGCGCGCGTGTGCTAC
*
17279599 GCCTCCGCGCGCGTGTGCTCC
1 GCCTCCGCGCGCGTGTGCTAC
*
17279620 TCCTCCG
1 GCCTCCG
17279627 TACTCCCGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 6 0.25
20 1 0.04
21 17 0.71
ACGTcount: A:0.02, C:0.49, G:0.28, T:0.21
Consensus pattern (21 bp):
GCCTCCGCGCGCGTGTGCTAC
Found at i:17280653 original size:30 final size:30
Alignment explanation
Indices: 17280619--17280677 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
17280609 TATAGAATTT
17280619 GTGTTTTATTATTTTAAATTCATTATGTAC
1 GTGTTTTATTATTTTAAATTCATTATGTAC
17280649 GTGTTTTATTATTTTAAATTCATTATGTA
1 GTGTTTTATTATTTTAAATTCATTATGTA
17280678 TGTTCTTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.05, G:0.10, T:0.58
Consensus pattern (30 bp):
GTGTTTTATTATTTTAAATTCATTATGTAC
Found at i:17280690 original size:23 final size:24
Alignment explanation
Indices: 17280660--17280713 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
17280650 TGTTTTATTA
17280660 TTTTAAAT-TCATTATGTA-TGTTC
1 TTTTAAATCT-ATTATGTATTGTTC
* *
17280683 TTTTAAATCTATTGTGTATTGTTG
1 TTTTAAATCTATTATGTATTGTTC
17280707 TTTTAAA
1 TTTTAAA
17280714 ATTCTTGTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 15 0.56
24 12 0.44
ACGTcount: A:0.26, C:0.06, G:0.11, T:0.57
Consensus pattern (24 bp):
TTTTAAATCTATTATGTATTGTTC
Found at i:17280710 original size:24 final size:23
Alignment explanation
Indices: 17280657--17280765 Score: 87
Period size: 24 Copynumber: 4.6 Consensus size: 23
17280647 ACGTGTTTTA
*
17280657 TTATTTTAAATTCATTATGTA-TG
1 TTATTTTAAATT-ATTGTGTATTG
*
17280680 TTCTTTTAAATCTATTGTGTATTG
1 TTATTTTAAAT-TATTGTGTATTG
* * *
17280704 TTGTTTTAAAATTCTTGTGTATTA
1 TTATTTT-AAATTATTGTGTATTG
* * *
17280728 TTATTTTAAAGTTACTATGTATTA
1 TTATTTTAAA-TTATTGTGTATTG
17280752 TTA-TTTAAAGTTAT
1 TTATTTTAAA-TTAT
17280766 CTCATATTTA
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
23 30 0.42
24 38 0.53
25 4 0.06
ACGTcount: A:0.28, C:0.05, G:0.10, T:0.57
Consensus pattern (23 bp):
TTATTTTAAATTATTGTGTATTG
Found at i:17280776 original size:24 final size:24
Alignment explanation
Indices: 17280723--17280777 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
17280713 AATTCTTGTG
*
17280723 TATTATTATTTTAAAGTTACTATG
1 TATTATTATTTTAAAGTTACTATA
17280747 TATTATTA-TTTAAAGTTATCTCATA
1 TATTATTATTTTAAAGTTA-CT-ATA
17280772 T-TTATT
1 TATTATT
17280778 TTATTGTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 10 0.36
24 15 0.54
25 3 0.11
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.56
Consensus pattern (24 bp):
TATTATTATTTTAAAGTTACTATA
Found at i:17284188 original size:3 final size:3
Alignment explanation
Indices: 17284180--17284233 Score: 60
Period size: 3 Copynumber: 18.7 Consensus size: 3
17284170 AAAACAGTAA
* *
17284180 AAG AAG AAG AAG AAG AAG AAG -AG ATA- AAT AAG AAA AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG A-AG AAG AAG AAG AAG AAG AAG
17284224 AAG -AG AAG AA
1 AAG AAG AAG AA
17284234 ATGGAGATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
2 5 0.11
3 38 0.86
4 1 0.02
ACGTcount: A:0.69, C:0.00, G:0.28, T:0.04
Consensus pattern (3 bp):
AAG
Found at i:17285786 original size:60 final size:60
Alignment explanation
Indices: 17285657--17285782 Score: 164
Period size: 60 Copynumber: 2.1 Consensus size: 60
17285647 TTGACTTTGA
* ** * * * * *
17285657 AATTTTTATAATTTGAACTACATTGACAAATTTTGTAAATGTTGAGGGCTAAATTTATTG
1 AATTTTTAGAATTCAAACTAAAATGACAAATCTTGTAAATATTGAGGGATAAATTTATTG
*
17285717 AATTTTTAGAATTCAAACTAAAATGACAAATCTTGTAAATATTGA-GGATAAATTTGTTG
1 AATTTTTAGAATTCAAACTAAAATGACAAATCTTGTAAATATTGAGGGATAAATTTATTG
17285776 AATTTTT
1 AATTTTT
17285783 TAGATAGAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
59 19 0.33
60 38 0.67
ACGTcount: A:0.38, C:0.06, G:0.13, T:0.42
Consensus pattern (60 bp):
AATTTTTAGAATTCAAACTAAAATGACAAATCTTGTAAATATTGAGGGATAAATTTATTG
Found at i:17288537 original size:12 final size:12
Alignment explanation
Indices: 17288520--17288577 Score: 62
Period size: 12 Copynumber: 4.8 Consensus size: 12
17288510 GGGTAGGATT
17288520 TGATTATGTATC
1 TGATTATGTATC
*
17288532 TGATTATGCATC
1 TGATTATGTATC
* *
17288544 TAATTCTGTATC
1 TGATTATGTATC
* *
17288556 TGAATATGCATC
1 TGATTATGTATC
*
17288568 TGATTCTGTA
1 TGATTATGTA
17288578 ACTAAACTGC
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.26, C:0.14, G:0.16, T:0.45
Consensus pattern (12 bp):
TGATTATGTATC
Found at i:17288558 original size:24 final size:24
Alignment explanation
Indices: 17288526--17288577 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
17288516 GATTTGATTA
*
17288526 TGTATCTGATTATGCATCTAATTC
1 TGTATCTGAATATGCATCTAATTC
*
17288550 TGTATCTGAATATGCATCTGATTC
1 TGTATCTGAATATGCATCTAATTC
17288574 TGTA
1 TGTA
17288578 ACTAAACTGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.25, C:0.15, G:0.15, T:0.44
Consensus pattern (24 bp):
TGTATCTGAATATGCATCTAATTC
Found at i:17290314 original size:60 final size:59
Alignment explanation
Indices: 17290244--17290379 Score: 166
Period size: 59 Copynumber: 2.3 Consensus size: 59
17290234 TTAGCCAACT
* *
17290244 GGTGACCAAAAAAGACAAAAT-CGAATAATTGGGTGATTATTTTGTAATTTTTCATATTTG
1 GGTGACCAAAAAAGA-AAAATACGAATAATTGGGT-ACTATTTTGTAATTTTTCATAGTTG
* ** * *
17290304 GGTGATCAAAAAAGAAATTTACTAATAGTTGGGTACTATTTTGTAATTTTTCATAGTTG
1 GGTGACCAAAAAAGAAAAATACGAATAATTGGGTACTATTTTGTAATTTTTCATAGTTG
* *
17290363 AGTAACCAAAAAAGAAA
1 GGTGACCAAAAAAGAAA
17290380 CCATAATTAA
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
59 40 0.62
60 25 0.38
ACGTcount: A:0.40, C:0.08, G:0.18, T:0.35
Consensus pattern (59 bp):
GGTGACCAAAAAAGAAAAATACGAATAATTGGGTACTATTTTGTAATTTTTCATAGTTG
Found at i:17294812 original size:23 final size:23
Alignment explanation
Indices: 17294778--17294822 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
17294768 ATTTAAACTA
**
17294778 AAAATCAACAAATTTAACAATCG
1 AAAATCAACAAATAGAACAATCG
17294801 AAAAT-AATCAAATAGAACAATC
1 AAAATCAA-CAAATAGAACAATC
17294823 AGGAGATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.60, C:0.16, G:0.04, T:0.20
Consensus pattern (23 bp):
AAAATCAACAAATAGAACAATCG
Found at i:17296432 original size:7 final size:7
Alignment explanation
Indices: 17296419--17296453 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
17296409 ATCCATGAAT
17296419 GGATCTA
1 GGATCTA
*
17296426 AGATCTA
1 GGATCTA
17296433 GGATCTA
1 GGATCTA
17296440 GGATCTA
1 GGATCTA
17296447 GGATCTA
1 GGATCTA
17296454 TTCTACTTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (7 bp):
GGATCTA
Found at i:17300117 original size:35 final size:35
Alignment explanation
Indices: 17300059--17300152 Score: 84
Period size: 35 Copynumber: 2.7 Consensus size: 35
17300049 ATGAATTTAG
* **
17300059 TATAAATACAATTTAATTTATATTGT-ATTATTTGAT
1 TATAAATATAATTTAA-AAATATTGTGA-TATTTGAT
* * *
17300095 T-TAAATATAATTTGTAAAATATTTTGATATTTTAT
1 TATAAATATAATTT-AAAAATATTGTGATATTTGAT
*
17300130 TATGAATATAATTTAAAAATATT
1 TATAAATATAATTTAAAAATATT
17300153 TAAATTTTAT
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
35 33 0.70
36 14 0.30
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (35 bp):
TATAAATATAATTTAAAAATATTGTGATATTTGAT
Found at i:17301734 original size:6 final size:6
Alignment explanation
Indices: 17301723--17301756 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
17301713 AAGTTTCCAA
*
17301723 AAATGG AAATGG AAAT-G AAATGA AAATGG AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATG
17301757 ATCCATTTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.56, C:0.00, G:0.26, T:0.18
Consensus pattern (6 bp):
AAATGG
Found at i:17301749 original size:17 final size:17
Alignment explanation
Indices: 17301723--17301757 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
17301713 AAGTTTCCAA
*
17301723 AAATGGAAATGGAAATG
1 AAATGAAAATGGAAATG
17301740 AAATGAAAATGGAAATG
1 AAATGAAAATGGAAATG
17301757 A
1 A
17301758 TCCATTTGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.26, T:0.17
Consensus pattern (17 bp):
AAATGAAAATGGAAATG
Found at i:17303189 original size:25 final size:27
Alignment explanation
Indices: 17303161--17303210 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
17303151 CTATTAAAAC
*
17303161 TCTTCTAAA-AAAACTC-AAGAGAAGT
1 TCTTCAAAAGAAAACTCAAAGAGAAGT
*
17303186 TCTTGAAAAGAAAACTCAAAGAGAA
1 TCTTCAAAAGAAAACTCAAAGAGAA
17303211 TTTATTATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 7 0.33
27 7 0.33
ACGTcount: A:0.52, C:0.14, G:0.14, T:0.20
Consensus pattern (27 bp):
TCTTCAAAAGAAAACTCAAAGAGAAGT
Found at i:17319140 original size:16 final size:16
Alignment explanation
Indices: 17319119--17319150 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
17319109 CAATCTAAAA
17319119 TATCAAAACACCAATT
1 TATCAAAACACCAATT
*
17319135 TATCAAAACCCCAATT
1 TATCAAAACACCAATT
17319151 GAGATACTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (16 bp):
TATCAAAACACCAATT
Found at i:17324721 original size:17 final size:15
Alignment explanation
Indices: 17324689--17324723 Score: 52
Period size: 17 Copynumber: 2.2 Consensus size: 15
17324679 TTAAAAGGAA
17324689 AATAATATAACATAC
1 AATAATATAACATAC
17324704 AATAACTATAATCATAC
1 AATAA-TATAA-CATAC
17324721 AAT
1 AAT
17324724 TATTCAATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.28
16 5 0.28
17 8 0.44
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (15 bp):
AATAATATAACATAC
Found at i:17325914 original size:20 final size:19
Alignment explanation
Indices: 17325891--17325938 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
17325881 TTTCTCCCTA
17325891 TTTCATTTCTATTCTGTTTC
1 TTTCATTTCT-TTCTGTTTC
*
17325911 TTTCTATTTCTTTTTGTTTC
1 TTTC-ATTTCTTTCTGTTTC
*
17325931 TTTTATTT
1 TTTCATTT
17325939 ATTATATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 4 0.16
20 15 0.60
21 6 0.24
ACGTcount: A:0.08, C:0.15, G:0.04, T:0.73
Consensus pattern (19 bp):
TTTCATTTCTTTCTGTTTC
Found at i:17329179 original size:27 final size:27
Alignment explanation
Indices: 17329149--17329478 Score: 407
Period size: 27 Copynumber: 12.3 Consensus size: 27
17329139 TATAACAATC
* *
17329149 ATTTTACCCTAT-GGGGGTATTTTGATA
1 ATTTTACCCT-TCGAGGGTATTTCGATA
17329176 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* * *
17329203 ATTTTACCTTTTGGGGGTATTTC-AGTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
* * *
17329230 ATTTTACCCTTCAAAGGTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* * *
17329257 GTTTTACCTTTCGAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
17329284 ATTTTACCCTTC-AGAGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
17329310 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
17329337 ATTTTAACCTTCGAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
17329364 CTTTTACCCTTCGAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
17329391 ATTTTACCTTTCGAGGGTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
17329418 ATTTTACCCATCG-GAGGTATTTCGATA
1 ATTTTACCCTTCGAG-GGTATTTCGATA
* *
17329445 ATTTTACCCTTCGAAGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
17329472 ATTTTAC
1 ATTTTAC
17329479 GGCCTAAGCC
Statistics
Matches: 262, Mismatches: 35, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
26 28 0.11
27 233 0.89
28 1 0.00
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:17335446 original size:20 final size:18
Alignment explanation
Indices: 17335421--17335462 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 18
17335411 TTGCCAAATT
17335421 CTCTCTTCTCATCTCTTCTC
1 CTCTCTTCTCA--TCTTCTC
*
17335441 CTCTCTTTTCATCTTCTC
1 CTCTCTTCTCATCTTCTC
17335459 CTCT
1 CTCT
17335463 TCATTCTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.52
20 10 0.48
ACGTcount: A:0.05, C:0.43, G:0.00, T:0.52
Consensus pattern (18 bp):
CTCTCTTCTCATCTTCTC
Found at i:17336231 original size:27 final size:27
Alignment explanation
Indices: 17336193--17336570 Score: 354
Period size: 27 Copynumber: 14.1 Consensus size: 27
17336183 AATGGGCCAC
* *
17336193 AAATGATCGAAATACCCTTGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* **
17336220 AAATGACCGAAATACCC-CAAATAGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* **
17336246 AAATGACCGAAATACCC-CAAATAGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
17336272 AAATGACCGAAATACCCTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* ** * *
17336299 AAATAACTAAAATACCCTCAAAAGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
**
17336326 AAATGACC-AAA-ATTCTCGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* *
17336351 AAATGACTGAAATACCCTCGAAGAGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* ** * *
17336378 AAATAACTAAAATACCCCCGAAAGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* *
17336405 AAATGACCGAAATACCTTCAAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* *
17336432 AAATGACCAAAATACCCTTGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
**
17336459 AAATGACTAAAATA-CCTACGAAGGGTA
1 AAATGACCGAAATACCCT-CGAAGGGTA
* *
17336486 AAATGATCGAAATACCCTTGAAGGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
* * * ** *
17336513 AAATTACCAAAATACCTTTAAAAGGTA
1 AAATGACCGAAATACCCTCGAAGGGTA
**
17336540 AAATGACTAAAATACCCTC-ATAGGGTA
1 AAATGACCGAAATACCCTCGA-AGGGTA
17336567 AAAT
1 AAAT
17336571 AACTGTTATA
Statistics
Matches: 289, Mismatches: 56, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
25 17 0.06
26 58 0.20
27 211 0.73
28 3 0.01
ACGTcount: A:0.47, C:0.18, G:0.16, T:0.19
Consensus pattern (27 bp):
AAATGACCGAAATACCCTCGAAGGGTA
Found at i:17336468 original size:81 final size:80
Alignment explanation
Indices: 17336193--17336556 Score: 410
Period size: 81 Copynumber: 4.5 Consensus size: 80
17336183 AATGGGCCAC
* ** *
17336193 AAATGATCGAAATACCCTTGAAGGGTAAAATGACCGAAATA-CCCC-AAATAGTAAAATGACCGA
1 AAATGACCGAAATACCCTTGAAGGGTAAAATGACTAAAATACCCCCGAAA-GGTAAAATGACCGA
* **
17336256 AATACCCCAAATAGTA
65 AATACCTCAAAGGGTA
* * * * *
17336272 AAATGACCGAAATACCCTCGAAGGGTAAAATAACTAAAATACCCTCAAAAGGTAAAATGACCAAA
1 AAATGACCGAAATACCCTTGAAGGGTAAAATGACTAAAATACCCCCGAAAGGTAAAATGACCGAA
* *
17336337 AT-TCTCGAAGGGTA
66 ATACCTCAAAGGGTA
* * * *
17336351 AAATGACTGAAATACCCTCGAAGAGTAAAATAACTAAAATACCCCCGAAAGGTAAAATGACCGAA
1 AAATGACCGAAATACCCTTGAAGGGTAAAATGACTAAAATACCCCCGAAAGGTAAAATGACCGAA
17336416 ATACCTTCAAAGGGTA
66 ATACC-TCAAAGGGTA
* ** * *
17336432 AAATGACCAAAATACCCTTGAAGGGTAAAATGACTAAAATACCTACGAAGGGTAAAATGATCGAA
1 AAATGACCGAAATACCCTTGAAGGGTAAAATGACTAAAATACCCCCGAAAGGTAAAATGACCGAA
**
17336497 ATACCCTTGAAGGGTA
66 ATA-CCTCAAAGGGTA
* * * * *
17336513 AAATTACCAAAATACCTTTAAAAGGTAAAATGACTAAAATACCC
1 AAATGACCGAAATACCCTTGAAGGGTAAAATGACTAAAATACCC
17336557 TCATAGGGTA
Statistics
Matches: 244, Mismatches: 36, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
79 105 0.43
80 19 0.08
81 118 0.48
82 2 0.01
ACGTcount: A:0.47, C:0.19, G:0.16, T:0.19
Consensus pattern (80 bp):
AAATGACCGAAATACCCTTGAAGGGTAAAATGACTAAAATACCCCCGAAAGGTAAAATGACCGAA
ATACCTCAAAGGGTA
Found at i:17336777 original size:26 final size:26
Alignment explanation
Indices: 17336748--17336819 Score: 90
Period size: 26 Copynumber: 2.8 Consensus size: 26
17336738 TTTGCCACAT
* **
17336748 TTACTGTTACTGGCAGCTTTATTGTA
1 TTACTGTTACTGGCAGCTTTACTACA
*
17336774 TTACTGTTACTGGCAGCTGTACTACA
1 TTACTGTTACTGGCAGCTTTACTACA
* *
17336800 TCACTATTACTGGCAGCTTT
1 TTACTGTTACTGGCAGCTTT
17336820 GCTGCGATAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.40
Consensus pattern (26 bp):
TTACTGTTACTGGCAGCTTTACTACA
Found at i:17336976 original size:28 final size:28
Alignment explanation
Indices: 17336936--17336996 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
17336926 ATTGTATTGA
* *
17336936 TTACTCTATTGGGCTAAGGCCCACACTG
1 TTACTGTAATGGGCTAAGGCCCACACTG
17336964 TTACTGTAATGGGCTAAGGCCCACACTG
1 TTACTGTAATGGGCTAAGGCCCACACTG
17336992 -TACTG
1 TTACTG
17336997 ATACTATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 5 0.16
28 26 0.84
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (28 bp):
TTACTGTAATGGGCTAAGGCCCACACTG
Found at i:17344444 original size:27 final size:27
Alignment explanation
Indices: 17344414--17344651 Score: 248
Period size: 27 Copynumber: 8.8 Consensus size: 27
17344404 AGAATGAATA
*
17344414 AAATACCCTCGATGGATAAAATTATCG
1 AAATACCCTCGATGGGTAAAATTATCG
*
17344441 AAATA-CCTCTAATGGGTAAAATTATCG
1 AAATACCCTC-GATGGGTAAAATTATCG
* **
17344468 AAATACCCCCGATAAGTAAAATTATCG
1 AAATACCCTCGATGGGTAAAATTATCG
* *
17344495 AAATAACATCGATGGGTAAAATTA-CTG
1 AAATACCCTCGATGGGTAAAATTATC-G
*
17344522 AAATACCCTTGATGGGTAAAATTATCG
1 AAATACCCTCGATGGGTAAAATTATCG
* * *
17344549 AAATACCCCCAAAGGGTAAAATTATCG
1 AAATACCCTCGATGGGTAAAATTATCG
* * * * * *
17344576 AAATACCCCCAAAGGGTAAAATAACCA
1 AAATACCCTCGATGGGTAAAATTATCG
* *
17344603 AAATACCCTCGATGGGTAAAATTACCA
1 AAATACCCTCGATGGGTAAAATTATCG
*
17344630 AAATACCCATCTA-GGGTAAAAT
1 AAATACCC-TCGATGGGTAAAAT
17344652 AACGTTATAC
Statistics
Matches: 180, Mismatches: 26, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.03
27 168 0.93
28 7 0.04
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.23
Consensus pattern (27 bp):
AAATACCCTCGATGGGTAAAATTATCG
Done.