Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55868233
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 983842 characters in sequence are not A, C, G, or T
File 77 of 187
Found at i:22407276 original size:19 final size:20
Alignment explanation
Indices: 22407229--22407286 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
22407219 AAATTAAATC
*
22407229 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA--T
22407252 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
*
22407271 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
22407287 TTCAAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
22 7 0.21
23 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:22411499 original size:25 final size:25
Alignment explanation
Indices: 22411471--22411547 Score: 64
Period size: 25 Copynumber: 3.0 Consensus size: 25
22411461 AGATACAATT
*
22411471 AAAAGTTTAATCAATCTTAATTAAAA
1 AAAAGTTCAATCAATCTTAATT-AAA
* ** * * *
22411497 AAAAGTTGAATTTACCTTTATCAAA
1 AAAAGTTCAATCAATCTTAATTAAA
* *
22411522 TAACGTTCAATCAATCTTAATTAAA
1 AAAAGTTCAATCAATCTTAATTAAA
22411547 A
1 A
22411548 GAAAACAAAA
Statistics
Matches: 36, Mismatches: 15, Indels: 1
0.69 0.29 0.02
Matches are distributed among these distances:
25 20 0.56
26 16 0.44
ACGTcount: A:0.48, C:0.12, G:0.05, T:0.35
Consensus pattern (25 bp):
AAAAGTTCAATCAATCTTAATTAAA
Found at i:22424634 original size:28 final size:28
Alignment explanation
Indices: 22424597--22424676 Score: 86
Period size: 28 Copynumber: 3.1 Consensus size: 28
22424587 TTAAAGGGGA
22424597 AAGAAAATGAGAGAAAGAATCAAAGAAT
1 AAGAAAATGAGAGAAAGAATCAAAGAAT
*
22424625 AAGAGAATGAGAG-AA-AAT----G-A-
1 AAGAAAATGAGAGAAAGAATCAAAGAAT
*
22424645 GAGAAAATGAGAGAAAGAATCAAAGAAT
1 AAGAAAATGAGAGAAAGAATCAAAGAAT
22424673 AAGA
1 AAGA
22424677 GAAGGAGAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 16
0.67 0.07 0.27
Matches are distributed among these distances:
20 11 0.28
21 3 0.08
22 4 0.10
26 4 0.10
27 3 0.08
28 15 0.38
ACGTcount: A:0.62, C:0.03, G:0.25, T:0.10
Consensus pattern (28 bp):
AAGAAAATGAGAGAAAGAATCAAAGAAT
Found at i:22424658 original size:12 final size:10
Alignment explanation
Indices: 22424630--22424660 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
22424620 AGAATAAGAG
22424630 AATGAGAGAA
1 AATGAGAGAA
22424640 AATGAGAGAA
1 AATGAGAGAA
22424650 AATGAGAGAA
1 AATGAGAGAA
22424660 A
1 A
22424661 GAATCAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.61, C:0.00, G:0.29, T:0.10
Consensus pattern (10 bp):
AATGAGAGAA
Found at i:22425353 original size:21 final size:20
Alignment explanation
Indices: 22425329--22425378 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 20
22425319 AAGAATGGAG
22425329 AAATGATAATCTTGTT-AAGCC
1 AAATGATAAT-TTGTTCAAG-C
22425350 AAATG-TCAATTTGTTCGAAGC
1 AAATGAT-AATTTGTTC-AAGC
22425371 AAATGATA
1 AAATGATA
22425379 TCATTTTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
20 6 0.24
21 15 0.60
22 4 0.16
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (20 bp):
AAATGATAATTTGTTCAAGC
Found at i:22425571 original size:18 final size:18
Alignment explanation
Indices: 22425533--22425571 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
22425523 TCTTAGAAAC
*
22425533 TCTTGAAACTGCACATTT
1 TCTTGAAACTGCACATGT
22425551 TCTTGGAAACTGCA-ATGT
1 TCTT-GAAACTGCACATGT
22425569 TCT
1 TCT
22425572 GTTCAAACCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (18 bp):
TCTTGAAACTGCACATGT
Found at i:22435563 original size:16 final size:16
Alignment explanation
Indices: 22435544--22435578 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
22435534 TTAAACTACC
*
22435544 AACTAACTTAACTAAA
1 AACTAACATAACTAAA
*
22435560 AACTAACATAATTAAA
1 AACTAACATAACTAAA
22435576 AAC
1 AAC
22435579 ATGTTTTAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.60, C:0.17, G:0.00, T:0.23
Consensus pattern (16 bp):
AACTAACATAACTAAA
Found at i:22436019 original size:19 final size:19
Alignment explanation
Indices: 22435995--22436032 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
22435985 TCCTGCACTT
22435995 GGAAGAAAAAGTAGAAAAA
1 GGAAGAAAAAGTAGAAAAA
*
22436014 GGAAGAAGAAGTAGAAAAA
1 GGAAGAAAAAGTAGAAAAA
22436033 AGAATAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.29, T:0.05
Consensus pattern (19 bp):
GGAAGAAAAAGTAGAAAAA
Found at i:22439162 original size:37 final size:36
Alignment explanation
Indices: 22439100--22439174 Score: 91
Period size: 37 Copynumber: 2.1 Consensus size: 36
22439090 GATAACCACT
22439100 TTAATATTAAATTAATAAAATACTATTAAAATAAGTA
1 TTAATATTAAATTAATAAAATACTATTAAAATAA-TA
* *
22439137 TTAA-ATTAAATTTAATATTAA-ACTATTGAAATAATA
1 TTAATATTAAA-TTAATA-AAATACTATTAAAATAATA
22439173 TT
1 TT
22439175 GTTTTTGGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 10 0.29
37 22 0.65
38 2 0.06
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (36 bp):
TTAATATTAAATTAATAAAATACTATTAAAATAATA
Found at i:22440751 original size:25 final size:25
Alignment explanation
Indices: 22440723--22440794 Score: 90
Period size: 25 Copynumber: 2.9 Consensus size: 25
22440713 AGCTATTCCA
* *
22440723 AGCTGAATAACGGGAAGCTCATGTG
1 AGCTGAATAACAGGAAGCTCATGCG
*
22440748 AGCTGTATAACAGGAAGCTCATGCG
1 AGCTGAATAACAGGAAGCTCATGCG
* * *
22440773 AGCTGAGTATCAGCAAGCTCAT
1 AGCTGAATAACAGGAAGCTCAT
22440795 AAGAGCTGTG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (25 bp):
AGCTGAATAACAGGAAGCTCATGCG
Found at i:22448197 original size:25 final size:25
Alignment explanation
Indices: 22448169--22448236 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 25
22448159 AGCTCTTCCA
*
22448169 AGCTGAATAATGGGAAGCTAATGCG
1 AGCTGAATAACGGGAAGCTAATGCG
* * *
22448194 AGCTAAATAACGGGAAGCTCATGTG
1 AGCTGAATAACGGGAAGCTAATGCG
* *
22448219 AGCTGTAT-ACGAGAAGCT
1 AGCTGAATAACGGGAAGCT
22448237 CATGAGAGTT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
24 9 0.25
25 27 0.75
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.21
Consensus pattern (25 bp):
AGCTGAATAACGGGAAGCTAATGCG
Found at i:22449196 original size:22 final size:22
Alignment explanation
Indices: 22449171--22449221 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
22449161 ACTTTAATTG
22449171 ATAATTTCCAAAATTATCCTTA
1 ATAATTTCCAAAATTATCCTTA
22449193 ATAATTTCCAAAATTATCCTTA
1 ATAATTTCCAAAATTATCCTTA
22449215 ATAATTT
1 ATAATTT
22449222 ATTAAATTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.43
Consensus pattern (22 bp):
ATAATTTCCAAAATTATCCTTA
Found at i:22453958 original size:10 final size:10
Alignment explanation
Indices: 22453943--22453967 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
22453933 AATGTTGGAC
22453943 TGGTGCTTGA
1 TGGTGCTTGA
22453953 TGGTGCTTGA
1 TGGTGCTTGA
22453963 TGGTG
1 TGGTG
22453968 ATATCCGGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.08, G:0.44, T:0.40
Consensus pattern (10 bp):
TGGTGCTTGA
Found at i:22465394 original size:22 final size:22
Alignment explanation
Indices: 22465366--22465417 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 22
22465356 AAGTATTTTA
22465366 AAAGACA-TGATGCAAAAATATT
1 AAAGACATTG-TGCAAAAATATT
*
22465388 AAAGACATTGTTCAAAAATATT
1 AAAGACATTGTGCAAAAATATT
22465410 AAATGACA
1 AAA-GACA
22465418 ATATTAAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 21 0.78
23 6 0.22
ACGTcount: A:0.54, C:0.10, G:0.12, T:0.25
Consensus pattern (22 bp):
AAAGACATTGTGCAAAAATATT
Found at i:22465446 original size:16 final size:16
Alignment explanation
Indices: 22465425--22465468 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
22465415 ACAATATTAA
22465425 GAATTTTTAGATAATT
1 GAATTTTTAGATAATT
*
22465441 GAATTTTTAAATAATT
1 GAATTTTTAGATAATT
*
22465457 GAAATTTTAGAT
1 GAATTTTTAGAT
22465469 GTTTTTAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (16 bp):
GAATTTTTAGATAATT
Found at i:22466351 original size:31 final size:31
Alignment explanation
Indices: 22466315--22466378 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
22466305 TGACACAAAT
22466315 GTATATTTGTTTCAATGGCTAAATGTTTTGG
1 GTATATTTGTTTCAATGGCTAAATGTTTTGG
22466346 GTATATTTGTTTCAATGGCTAAATGTTTTGG
1 GTATATTTGTTTCAATGGCTAAATGTTTTGG
22466377 GT
1 GT
22466379 GTGTGTTTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.22, C:0.06, G:0.23, T:0.48
Consensus pattern (31 bp):
GTATATTTGTTTCAATGGCTAAATGTTTTGG
Found at i:22467458 original size:17 final size:18
Alignment explanation
Indices: 22467438--22467486 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
22467428 GCAATCCAGA
22467438 CGTGTGGG-CCACT-CGGG
1 CGTGTGGGCCCA-TACGGG
*
22467455 CGTGTAGGCCCATACGGG
1 CGTGTGGGCCCATACGGG
*
22467473 CATGTGGGCCCATA
1 CGTGTGGGCCCATA
22467487 ATTTTAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 8 0.30
18 19 0.70
ACGTcount: A:0.14, C:0.29, G:0.39, T:0.18
Consensus pattern (18 bp):
CGTGTGGGCCCATACGGG
Found at i:22467659 original size:26 final size:23
Alignment explanation
Indices: 22467630--22467678 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 23
22467620 GACATTGCTA
*
22467630 TATATGTTTGATTAGTCTGATATATG
1 TATATATTTGA-TA-TCTG-TATATG
22467656 TATATATTTGATATCTGTATATG
1 TATATATTTGATATCTGTATATG
22467679 AGCATGTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 6 0.27
24 4 0.18
25 2 0.09
26 10 0.45
ACGTcount: A:0.29, C:0.04, G:0.16, T:0.51
Consensus pattern (23 bp):
TATATATTTGATATCTGTATATG
Found at i:22481087 original size:10 final size:11
Alignment explanation
Indices: 22481066--22481111 Score: 55
Period size: 10 Copynumber: 4.5 Consensus size: 11
22481056 TAAATAAAAA
22481066 TATATAAA-AT
1 TATATAAATAT
22481076 TAT-TAAATAT
1 TATATAAATAT
22481086 TAATATAAATA-
1 T-ATATAAATAT
22481097 TATATAAATA-
1 TATATAAATAT
22481107 TATAT
1 TATAT
22481112 TTTGAGTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
9 4 0.12
10 20 0.61
11 3 0.09
12 6 0.18
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (11 bp):
TATATAAATAT
Found at i:22486191 original size:17 final size:17
Alignment explanation
Indices: 22486138--22486192 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
22486128 CATTGTCTAA
*
22486138 CACACGCCCGTGTGGCT
1 CACACGGCCGTGTGGCT
* *
22486155 CACA-AGCC-TGAATGGTT
1 CACACGGCCGTG--TGGCT
22486172 CACACGGCCGTGTGGCT
1 CACACGGCCGTGTGGCT
22486189 CACA
1 CACA
22486193 TGGTCTGCCA
Statistics
Matches: 29, Mismatches: 5, Indels: 8
0.69 0.12 0.19
Matches are distributed among these distances:
15 2 0.07
16 2 0.07
17 20 0.69
18 3 0.10
19 2 0.07
ACGTcount: A:0.20, C:0.35, G:0.27, T:0.18
Consensus pattern (17 bp):
CACACGGCCGTGTGGCT
Found at i:22491890 original size:24 final size:23
Alignment explanation
Indices: 22491863--22491908 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
22491853 TTTGGAGAAT
*
22491863 TTTGTGTTTATGTTTTAAGGGTTA
1 TTTGTGTTTAGGTTTT-AGGGTTA
* *
22491887 TTTGTTTTTGGGTTTTAGGGTT
1 TTTGTGTTTAGGTTTTAGGGTT
22491909 TAATTTTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.11, C:0.00, G:0.28, T:0.61
Consensus pattern (23 bp):
TTTGTGTTTAGGTTTTAGGGTTA
Found at i:22493503 original size:24 final size:24
Alignment explanation
Indices: 22493474--22493524 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
22493464 TTTCTAGACG
* *
22493474 ATTTAATATTTATTAGTATAATAT
1 ATTTAACATTTATTAGCATAATAT
*
22493498 ATTTAACATTTATTAGCATAATTT
1 ATTTAACATTTATTAGCATAATAT
22493522 ATT
1 ATT
22493525 CGACCTACGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.53
Consensus pattern (24 bp):
ATTTAACATTTATTAGCATAATAT
Found at i:22495273 original size:15 final size:15
Alignment explanation
Indices: 22495249--22495306 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 15
22495239 TCTTAACCTA
22495249 AATT-TTTTAATTTT
1 AATTATTTTAATTTT
22495263 AATTATTTTAATATTT
1 AATTATTTTAAT-TTT
* * *
22495279 ATTTA-ATTAATTCCT
1 AATTATTTTAATT-TT
22495294 AATTATTTTAATT
1 AATTATTTTAATT
22495307 ACCTAACCCA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
14 5 0.14
15 17 0.49
16 13 0.37
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
AATTATTTTAATTTT
Found at i:22496827 original size:25 final size:25
Alignment explanation
Indices: 22496799--22496847 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
22496789 AAGATGACTT
22496799 TATATAAAATT-TTAATAAATAAAAA
1 TATATAAAATTATTAA-AAATAAAAA
* *
22496824 TATATTAAATTATTAAATATAAAA
1 TATATAAAATTATTAAAAATAAAA
22496848 TTAAAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (25 bp):
TATATAAAATTATTAAAAATAAAAA
Found at i:22496863 original size:15 final size:14
Alignment explanation
Indices: 22496813--22496863 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 14
22496803 TAAAATTTTA
*
22496813 ATAAATAAAAATAT
1 ATAAATTAAAATAT
22496827 ATTAAATTATTAAATAT
1 A-TAAATTA--AAATAT
22496844 A-AAATTAAAATAAT
1 ATAAATTAAAAT-AT
22496858 ATAAAT
1 ATAAAT
22496864 ATATATTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
13 4 0.13
14 4 0.13
15 16 0.52
17 7 0.23
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAAATTAAAATAT
Found at i:22500753 original size:20 final size:20
Alignment explanation
Indices: 22500711--22500754 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
22500701 ATAATGTAAC
* * *
22500711 ATAATAATAGTAATAATAGT
1 ATAATAATAGTAAAAAAAAT
22500731 ATAATAATAGTAAAAAAAAT
1 ATAATAATAGTAAAAAAAAT
22500751 ATAA
1 ATAA
22500755 AAAAATGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.30
Consensus pattern (20 bp):
ATAATAATAGTAAAAAAAAT
Found at i:22511233 original size:50 final size:51
Alignment explanation
Indices: 22511118--22511242 Score: 153
Period size: 51 Copynumber: 2.5 Consensus size: 51
22511108 GATAATAACA
* ** * *
22511118 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACAGGGGATCCTCTCATCTCGG
* * * *
22511169 TGCCCATGCCATGTCCCAAACATGGTCTTATAGGGGA-CCTCTCATCTCGG
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACAGGGGATCCTCTCATCTCGG
*
22511219 TGCCAACGCCATGTCCCAGACATG
1 TGCCAAAGCCATGTCCCAGACATG
22511243 NNNNNNNNNN
Statistics
Matches: 62, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
50 30 0.48
51 32 0.52
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.26
Consensus pattern (51 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACAGGGGATCCTCTCATCTCGG
Found at i:22515762 original size:20 final size:21
Alignment explanation
Indices: 22515739--22515777 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
22515729 AAATAATACA
22515739 TTAAATTAAA-AAAATAAATC
1 TTAAATTAAATAAAATAAATC
*
22515759 TTAATTTAAATAAAATAAA
1 TTAAATTAAATAAAATAAA
22515778 AATAATTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (21 bp):
TTAAATTAAATAAAATAAATC
Found at i:22516469 original size:21 final size:21
Alignment explanation
Indices: 22516444--22516483 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
22516434 CAAATACAAT
22516444 ATAATGTA-AATATATAATCCA
1 ATAAT-TATAATATATAATCCA
*
22516465 ATAATTATAATATCTAATC
1 ATAATTATAATATATAATC
22516484 AAATTAATCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.50, C:0.10, G:0.03, T:0.38
Consensus pattern (21 bp):
ATAATTATAATATATAATCCA
Found at i:22518204 original size:16 final size:17
Alignment explanation
Indices: 22518185--22518227 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
22518175 TTGCAGTTTT
22518185 TAATTT-TTTAAATAAA
1 TAATTTATTTAAATAAA
*
22518201 TAATTTCAGTTTCAATAAA
1 TAATTT-A-TTTAAATAAA
22518220 TAATTTAT
1 TAATTTAT
22518228 GCTCCTCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
16 6 0.26
17 1 0.04
18 1 0.04
19 15 0.65
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (17 bp):
TAATTTATTTAAATAAA
Found at i:22519021 original size:13 final size:13
Alignment explanation
Indices: 22519003--22519030 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
22518993 AGCTTTTTTC
22519003 TATTTTTAATTAA
1 TATTTTTAATTAA
22519016 TATTTTTAATTAA
1 TATTTTTAATTAA
22519029 TA
1 TA
22519031 AATATACTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TATTTTTAATTAA
Found at i:22519377 original size:18 final size:18
Alignment explanation
Indices: 22519354--22519388 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22519344 TTACATATAA
22519354 AAATAATAATTATATTTG
1 AAATAATAATTATATTTG
* *
22519372 AAATAATTATTTTATTT
1 AAATAATAATTATATTT
22519389 TATAATAGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
AAATAATAATTATATTTG
Found at i:22519567 original size:28 final size:28
Alignment explanation
Indices: 22519514--22519576 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
22519504 ATTAATTTCA
*
22519514 AATATTTTTTTAATATAATGATATATAT
1 AATATTTTTTTAATATAATGACATATAT
* *
22519542 AATATTTTTATT-ATATAATTACATATTT
1 AATATTTTT-TTAATATAATGACATATAT
*
22519570 ATTATTT
1 AATATTT
22519577 GATTTTATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 28 0.93
29 2 0.07
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (28 bp):
AATATTTTTTTAATATAATGACATATAT
Found at i:22519907 original size:5 final size:5
Alignment explanation
Indices: 22519893--22519923 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
22519883 AAATTCGACC
*
22519893 TATTT CATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT TATTT T
22519924 GATATATTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (5 bp):
TATTT
Found at i:22521584 original size:15 final size:15
Alignment explanation
Indices: 22521566--22521681 Score: 79
Period size: 15 Copynumber: 7.3 Consensus size: 15
22521556 GAAGGAGCCA
22521566 AAGAAGGAAGAACCC
1 AAGAAGGAAGAACCC
* * *
22521581 AAGAAAGAGGAGGAGCCA
1 AAG--A-AGGAAGAACCC
*
22521599 AAGAAAGAAGAACCC
1 AAGAAGGAAGAACCC
**
22521614 AAGAAGGAAGAAGAGCAG
1 AAGAAGGAAG-A-A-CCC
* * *
22521632 AAGAAAGAAGAGCCT
1 AAGAAGGAAGAACCC
*
22521647 AAGAAGGAAGAACCA
1 AAGAAGGAAGAACCC
*
22521662 AAAAAGGAAGAACCC
1 AAGAAGGAAGAACCC
22521677 AAGAA
1 AAGAA
22521682 AGAGGAAGAG
Statistics
Matches: 75, Mismatches: 20, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
15 49 0.65
16 2 0.03
17 3 0.04
18 21 0.28
ACGTcount: A:0.57, C:0.14, G:0.28, T:0.01
Consensus pattern (15 bp):
AAGAAGGAAGAACCC
Found at i:22521597 original size:33 final size:33
Alignment explanation
Indices: 22521560--22521705 Score: 149
Period size: 33 Copynumber: 4.5 Consensus size: 33
22521550 AGAGAAGAAG
*
22521560 GAGCCAAAGAAGGAAGAACCCAAGAAAGAGGAG
1 GAGCCAAAGAAGGAAGAACCCAAGAAAGAGGAA
* * *
22521593 GAGCCAAAGAAAGAAGAACCCAAGAAGGAAGAA
1 GAGCCAAAGAAGGAAGAACCCAAGAAAGAGGAA
* * *
22521626 GAG-CAGAAGAAAGAAGAGCCTAAG--A-AGGAA
1 GAGCCA-AAGAAGGAAGAACCCAAGAAAGAGGAA
* *
22521656 GAACCAAAAAAGGAAGAACCCAAGAAAGAGGAA
1 GAGCCAAAGAAGGAAGAACCCAAGAAAGAGGAA
*
22521689 GAG-AAGAAGAAGGAAGA
1 GAGCCA-AAGAAGGAAGA
22521706 GGAGAAAAAG
Statistics
Matches: 91, Mismatches: 16, Indels: 12
0.76 0.13 0.10
Matches are distributed among these distances:
30 20 0.22
31 2 0.02
32 4 0.04
33 65 0.71
ACGTcount: A:0.56, C:0.12, G:0.31, T:0.01
Consensus pattern (33 bp):
GAGCCAAAGAAGGAAGAACCCAAGAAAGAGGAA
Found at i:22521624 original size:18 final size:18
Alignment explanation
Indices: 22521603--22521658 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
22521593 GAGCCAAAGA
22521603 AAGAAGAACCCAAGAAGG
1 AAGAAGAACCCAAGAAGG
* *
22521621 AAGAAG-A-GC-AGAAGA
1 AAGAAGAACCCAAGAAGG
* *
22521636 AAGAAGAGCCTAAGAAGG
1 AAGAAGAACCCAAGAAGG
22521654 AAGAA
1 AAGAA
22521659 CCAAAAAAGG
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
15 11 0.38
16 1 0.03
17 1 0.03
18 16 0.55
ACGTcount: A:0.57, C:0.11, G:0.30, T:0.02
Consensus pattern (18 bp):
AAGAAGAACCCAAGAAGG
Found at i:22521690 original size:48 final size:48
Alignment explanation
Indices: 22521543--22521705 Score: 163
Period size: 48 Copynumber: 3.4 Consensus size: 48
22521533 GGGCCAGCAA
* *
22521543 AAGAGCCAGAGAA-GAAGGAGCCAAAGAAGGAAGAACCCAAGAAAGAGG
1 AAGAGCCAAAGAAGGAA-GAACCAAAGAAGGAAGAACCCAAGAAAGAGG
* * * ** *
22521591 AGGAGCCAAAGAAAGAAGAACCCAAGAAGGAAGAAGAGC-AG-AAGAAAG
1 AAGAGCCAAAGAAGGAAGAACCAAAGAAGGAAGAA-CCCAAGAAAG-AGG
* *
22521639 AAGAGCCTAAGAAGGAAGAACCAAAAAAGGAAGAACCCAAGAAAGAGG
1 AAGAGCCAAAGAAGGAAGAACCAAAGAAGGAAGAACCCAAGAAAGAGG
*
22521687 AAGAG-AAGAAGAAGGAAGA
1 AAGAGCCA-AAGAAGGAAGA
22521706 GGAGAAAAAG
Statistics
Matches: 92, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
47 4 0.04
48 81 0.88
49 7 0.08
ACGTcount: A:0.56, C:0.12, G:0.31, T:0.01
Consensus pattern (48 bp):
AAGAGCCAAAGAAGGAAGAACCAAAGAAGGAAGAACCCAAGAAAGAGG
Found at i:22524954 original size:19 final size:19
Alignment explanation
Indices: 22524930--22525002 Score: 137
Period size: 19 Copynumber: 3.8 Consensus size: 19
22524920 AATCTTCAAA
22524930 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22524949 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
22524968 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22524987 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
22525003 AGATATGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 52 1.00
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:22524973 original size:38 final size:36
Alignment explanation
Indices: 22524920--22525009 Score: 137
Period size: 38 Copynumber: 2.4 Consensus size: 36
22524910 AAGGAAACAT
22524920 AATCTTCA-AAGATATGCAATCTTAGATATGATATGC
1 AATCTT-AGAAGATATGCAATCTTAGATATGATATGC
*
22524956 AATCTTAGATATGATATGTAATCTTAGATATGATATGC
1 AATCTTAGA-A-GATATGCAATCTTAGATATGATATGC
22524994 AATCTTAGAAGATATG
1 AATCTTAGAAGATATG
22525010 ATTTTGTCAT
Statistics
Matches: 50, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
35 1 0.02
36 13 0.26
37 2 0.04
38 34 0.68
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.36
Consensus pattern (36 bp):
AATCTTAGAAGATATGCAATCTTAGATATGATATGC
Found at i:22530258 original size:12 final size:12
Alignment explanation
Indices: 22530241--22530279 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
22530231 TGATGATGGA
22530241 AAAAAGGAAAAG
1 AAAAAGGAAAAG
22530253 AAAAA-GAAAAG
1 AAAAAGGAAAAG
*
22530264 AAAGAAGAAAAAG
1 AAA-AAGGAAAAG
22530277 AAA
1 AAA
22530280 GAAGAAAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
11 9 0.38
12 7 0.29
13 8 0.33
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (12 bp):
AAAAAGGAAAAG
Found at i:22530266 original size:24 final size:25
Alignment explanation
Indices: 22530239--22530286 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
22530229 AATGATGATG
*
22530239 GAAAAAAGGAAAAGAAA-AAGAAAA
1 GAAAAAAGAAAAAGAAAGAAGAAAA
*
22530263 GAAAGAAGAAAAAGAAAGAAGAAA
1 GAAAAAAGAAAAAGAAAGAAGAAA
22530287 GAAGAAGACG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (25 bp):
GAAAAAAGAAAAAGAAAGAAGAAAA
Found at i:22530273 original size:7 final size:6
Alignment explanation
Indices: 22530241--22530292 Score: 61
Period size: 6 Copynumber: 8.3 Consensus size: 6
22530231 TGATGATGGA
*
22530241 AAAAAG GAAAAG AAAAAG -AAAAG AAAGAAG AAAAAG AAAGAAG AAAGAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAA-AAG AAAAAG AAA-AAG AAA-AAG
22530291 AA
1 AA
22530293 GACGAAAATG
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
5 5 0.12
6 18 0.44
7 18 0.44
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:22530288 original size:17 final size:16
Alignment explanation
Indices: 22530243--22530294 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
22530233 ATGATGGAAA
*
22530243 AAAGGAAAAGAAAAAG
1 AAAGAAAAAGAAAAAG
22530259 AAAAGAAAGAAGAAAAAG
1 -AAAGAAA-AAGAAAAAG
*
22530277 AAAGAAGAAAGAAGAAG
1 AAAGAA-AAAGAAAAAG
22530294 A
1 A
22530295 CGAAAATGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 21 0.68
18 10 0.32
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (16 bp):
AAAGAAAAAGAAAAAG
Found at i:22530294 original size:13 final size:12
Alignment explanation
Indices: 22530247--22530294 Score: 66
Period size: 11 Copynumber: 4.2 Consensus size: 12
22530237 TGGAAAAAAG
22530247 GAAAAGAAA-AA
1 GAAAAGAAAGAA
22530258 GAAAAGAAAGAA
1 GAAAAGAAAGAA
22530270 GAAAAAGAAAGAA
1 G-AAAAGAAAGAA
22530283 G-AAAG-AAGAA
1 GAAAAGAAAGAA
22530293 GA
1 GA
22530295 CGAAAATGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
10 6 0.18
11 13 0.38
12 3 0.09
13 12 0.35
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (12 bp):
GAAAAGAAAGAA
Found at i:22530299 original size:13 final size:13
Alignment explanation
Indices: 22530248--22530292 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
22530238 GGAAAAAAGG
22530248 AAAAGAAA-AAG-
1 AAAAGAAAGAAGA
22530259 AAAAGAAAGAAGA
1 AAAAGAAAGAAGA
22530272 AAAAGAAAGAAGA
1 AAAAGAAAGAAGA
22530285 AAGAAGAA
1 AA-AAGAA
22530293 GACGAAAATG
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
11 8 0.26
12 3 0.10
13 15 0.48
14 5 0.16
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (13 bp):
AAAAGAAAGAAGA
Found at i:22530299 original size:20 final size:20
Alignment explanation
Indices: 22530250--22530292 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
22530240 AAAAAAGGAA
22530250 AAGAAAAAG-AA-AAGAAAG
1 AAGAAAAAGAAAGAAGAAAG
22530268 AAGAAAAAGAAAGAAGAAAG
1 AAGAAAAAGAAAGAAGAAAG
22530288 AAGAA
1 AAGAA
22530293 GACGAAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 9 0.39
19 2 0.09
20 12 0.52
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (20 bp):
AAGAAAAAGAAAGAAGAAAG
Found at i:22531748 original size:88 final size:88
Alignment explanation
Indices: 22531547--22531752 Score: 299
Period size: 88 Copynumber: 2.3 Consensus size: 88
22531537 ACAAAGTTTT
* * *
22531547 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAA
1 TCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGAAA
22531612 TAGGTTGAAGATTGTAAATCCTA
66 TAGGTTGAAGATTGTAAATCCTA
* * *
22531635 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGTCAGTAGTGAA
1 TCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAGTGAA
*
22531699 ATAGGTTGAAGATTGTGAATCCTA
65 ATAGGTTGAAGATTGTAAATCCTA
* *
22531723 TCTCCTTGAG-CAACAATGGAGTAGGTTGAA
1 TCTCCCTG-GTCAACAATGGAATAGGTTGAA
22531753 AGTAACAGAT
Statistics
Matches: 109, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
87 2 0.02
88 106 0.97
89 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (88 bp):
TCTCCCTGGTCAACAATGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGAAA
TAGGTTGAAGATTGTAAATCCTA
Found at i:22531752 original size:44 final size:44
Alignment explanation
Indices: 22531547--22531727 Score: 319
Period size: 44 Copynumber: 4.1 Consensus size: 44
22531537 ACAAAGTTTT
22531547 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
*
22531591 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
22531635 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTA
* *
22531679 TCTCCCTGGTCAGTAGTGAAATAGGTTGAAGATTGTGAATCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
22531723 TCTCC
1 TCTCC
22531728 TTGAGCAACA
Statistics
Matches: 132, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
43 2 0.02
44 128 0.97
45 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (44 bp):
TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
Found at i:22532476 original size:217 final size:217
Alignment explanation
Indices: 22532101--22532494 Score: 680
Period size: 217 Copynumber: 1.8 Consensus size: 217
22532091 GCAATTTAAA
*
22532101 AGACTGAAGATGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCT
1 AGACTGAAGATGGCGAATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATTAAAGCCAATAATCCT
*
22532166 ATCTCCCTGAAGTTGCAATGGAGCGGATTAAAATTACAGATCTTATCTCTCTGAAGTTGCAGAGA
66 ATCTCCCTGAAGTTGCAATGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGA
* *
22532231 GCAGATCGCATCTAGTCTTATCTCCCTGAATTTGCAGTGGAGCAGACTAAGTAAACAAGCCTTAT
131 GCAGATCGCATCGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACAAGCCTTAT
22532296 CCTCCTGAAGTTGTAGTAAGAC
196 CCTCCTGAAGTTGTAGTAAGAC
*
22532318 AGACTGAAGATGGCGAATCTTATCTCTCTGAAGTTGCAGAGGAGCAGATTAAAGCCAATAATCCT
1 AGACTGAAGATGGCGAATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATTAAAGCCAATAATCCT
* * * *
22532383 ATCTCCTTGAAGTTGCAGTGGAGTGGATTAAAATCACAGATCTTATCTCTTTGAAGTTGCAGAGA
66 ATCTCCCTGAAGTTGCAATGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGA
* * *
22532448 GCAGATTGTATCGGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
131 GCAGATCGCATCGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
22532495 CCAAGAAAGC
Statistics
Matches: 165, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
217 165 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (217 bp):
AGACTGAAGATGGCGAATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATTAAAGCCAATAATCCT
ATCTCCCTGAAGTTGCAATGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGA
GCAGATCGCATCGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACAAGCCTTAT
CCTCCTGAAGTTGTAGTAAGAC
Found at i:22532513 original size:45 final size:45
Alignment explanation
Indices: 22532462--22532584 Score: 192
Period size: 45 Copynumber: 2.7 Consensus size: 45
22532452 ATTGTATCGG
*
22532462 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCGA
1 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCAA
* *
22532507 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAATCAA
1 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCAA
* * *
22532552 GTCTTATCCCCCTGAAATTGCAGTGGGGCAGAC
1 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
22532585 TAAATAAACA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 72 1.00
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.23
Consensus pattern (45 bp):
GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCAA
Found at i:22532585 original size:45 final size:45
Alignment explanation
Indices: 22532118--22532585 Score: 241
Period size: 44 Copynumber: 10.7 Consensus size: 45
22532108 AGATGGCGAA
* * * *
22532118 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAA-TAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAG-AAAGCAAG
* * * *
22532162 TCCTATCTCCCTGAAGTTGCAATGGAGCGGA-TTAA-AATTA-C-AG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAA--AGCAAG
* * * * *
22532205 ATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-TC--G-CATCTAG
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCAAG
*
22532246 TCTTATCTCCCTGAATTTGCAGTGGAGCAGACT-AAGTAAA-CAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAG-AAAGCAAG
* * * * **
22532290 CCTTATC-CTCCTGAAGTTGTAGT-AAGACAGACTGAAGATGGCGAA-
1 TCTTATCTC-CCTGAAGTTGCAGTGGAG-CAGACTCAAGAAAGC-AAG
* * * * * *
22532335 TCTTATCTCTCTGAAGTTGCAGAGGAGCAGATTAAAGCCAA-TAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAG-AAAGCAAG
* * ** * *
22532379 TCCTATCTCCTTGAAGTTGCAGTGGAGTGGA-T-TA-AAATCACAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCA-AG
** * * * * **
22532422 ATCTTATCTCTTTGAAGTTGCAG-AGAGCAGA-T--TG-TATCGGG
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCAAG
* *
22532463 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCAAG
*
22532508 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAATCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCAAG
* * *
22532553 TCTTATCCCCCTGAAATTGCAGTGGGGCAGACT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT
22532586 AAATAAACAA
Statistics
Matches: 326, Mismatches: 67, Indels: 61
0.72 0.15 0.13
Matches are distributed among these distances:
39 1 0.00
40 43 0.13
41 19 0.06
42 7 0.02
43 22 0.07
44 123 0.38
45 106 0.33
46 5 0.02
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCAAG
Found at i:22533158 original size:19 final size:19
Alignment explanation
Indices: 22533134--22533187 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
22533124 AATCTTCTAG
*
22533134 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
*
22533153 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22533172 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
22533188 AGATATGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:22533178 original size:38 final size:40
Alignment explanation
Indices: 22533134--22533210 Score: 104
Period size: 42 Copynumber: 1.9 Consensus size: 40
22533124 AATCTTCTAG
22533134 GATATGCAATCCT-AGATATGA-TATGTAATCTTAGATAT
1 GATATGCAATCCTAAGATATGATTATGTAATCTTAGATAT
* *
22533172 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCCT--AAGATATGATTATGTAATCTTAGA
22533211 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
38 12 0.36
41 8 0.24
42 13 0.39
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (40 bp):
GATATGCAATCCTAAGATATGATTATGTAATCTTAGATAT
Found at i:22535572 original size:29 final size:29
Alignment explanation
Indices: 22535527--22535608 Score: 130
Period size: 29 Copynumber: 2.9 Consensus size: 29
22535517 TTTGATATCT
*
22535527 AAAATAAAGAAACTAAATTCCTAAAAATA
1 AAAATAAAAAAACTAAATTCCTAAAAATA
* *
22535556 AAAATAAAAAAATTAAATTCCTGAAAATA
1 AAAATAAAAAAACTAAATTCCTAAAAATA
22535585 AAAATAAAAAAACTAAATT-CTAAA
1 AAAATAAAAAAACTAAATTCCTAAA
22535609 TGTTCAAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 4 0.08
29 44 0.92
ACGTcount: A:0.67, C:0.09, G:0.02, T:0.22
Consensus pattern (29 bp):
AAAATAAAAAAACTAAATTCCTAAAAATA
Found at i:22539827 original size:50 final size:50
Alignment explanation
Indices: 22539745--22539979 Score: 235
Period size: 50 Copynumber: 4.7 Consensus size: 50
22539735 CATTTGGGTA
*
22539745 AAGAGGTCCCATGTAAGACCATGTCTGCGACATGGCATTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* * * * *
22539795 AAGAGGTCTCATGTAAGACTATGCCTGGGACATGGCGTTGGCACTGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* * ** *
22539845 GAA-AGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCATTGATAT
1 -AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
** * * * * *
22539895 AAGAACTCCCATGTAAGACCATATTTGGGATATGGCATTGGCAGTTCAAGA-
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA--CCGAGAT
* *
22539946 AACA--TCTCATGTAAGACCATGTCTGGGACATGGC
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGC
22539980 TTTGACATCT
Statistics
Matches: 152, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
49 28 0.18
50 116 0.76
51 5 0.03
52 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
Found at i:22539924 original size:100 final size:99
Alignment explanation
Indices: 22539748--22539979 Score: 259
Period size: 100 Copynumber: 2.3 Consensus size: 99
22539738 TTGGGTAAAG
* * ** *
22539748 AGGTCCCATGTAAGACCATGTCTGCGACATGGCATTGGCACCGAGATAAGAGGTCTCATGTAAGA
1 AGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATAAGAACTCCCATGTAAGA
* * * *
22539813 CTATGCCTGGGACATGGCGTTGGCA-CTGAGATGAA
66 CCATACCTGGGACATGGCATTGGCAGCTCA-A-GAA
* ** *
22539848 AGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCATTGATATAAGAACTCCCATGTAAGA
1 AGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATAAGAACTCCCATGTAAGA
** * *
22539913 CCATATTTGGGATATGGCATTGGCAGTTCAAGAA
66 CCATACCTGGGACATGGCATTGGCAGCTCAAGAA
** *
22539947 ACATCTCATGTAAGACCATGTCTGGGACATGGC
1 AGGTCCCATGTAAGACCATGTCTGGGACATGGC
22539980 TTTGACATCT
Statistics
Matches: 110, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
99 32 0.29
100 76 0.69
101 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (99 bp):
AGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATAAGAACTCCCATGTAAGA
CCATACCTGGGACATGGCATTGGCAGCTCAAGAA
Found at i:22543607 original size:10 final size:10
Alignment explanation
Indices: 22543592--22543631 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
22543582 TGCCAAATTC
22543592 TCTCTTCTCA
1 TCTCTTCTCA
*
22543602 TCTCTTCTCC
1 TCTCTTCTCA
*
22543612 TCTCTTTTCA
1 TCTCTTCTCA
22543622 TCTTCTTCTC
1 TC-TCTTCTC
22543632 TTCTTTCTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
10 19 0.76
11 6 0.24
ACGTcount: A:0.05, C:0.40, G:0.00, T:0.55
Consensus pattern (10 bp):
TCTCTTCTCA
Found at i:22543616 original size:20 final size:21
Alignment explanation
Indices: 22543591--22543639 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
22543581 TTGCCAAATT
22543591 CTCTCTTCTCATC-TCTTCTC
1 CTCTCTTCTCATCTTCTTCTC
*
22543611 CTCTCTTTTCATCTTCTTCTC
1 CTCTCTTCTCATCTTCTTCTC
*
22543632 TTCT-TTCT
1 CTCTCTTCT
22543640 GGTGCTACAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.04, C:0.39, G:0.00, T:0.57
Consensus pattern (21 bp):
CTCTCTTCTCATCTTCTTCTC
Found at i:22544343 original size:27 final size:27
Alignment explanation
Indices: 22544301--22544578 Score: 320
Period size: 27 Copynumber: 10.4 Consensus size: 27
22544291 TGCGAATTAT
* *
22544301 GGTAAAATGACCGAAATACCCTCGATG
1 GGTAAAATTATCGAAATACCCTCGATG
* *
22544328 GGTAAAATTA-CTGAAATACTCTCGATA
1 GGTAAAATTATC-GAAATACCCTCGATG
*
22544355 GGTAAAATTA-CTAAAATACCCTC-ATAG
1 GGTAAAATTATC-GAAATACCCTCGAT-G
* * *
22544382 GGTAAAGTTATCGAAATACCCTTGAAG
1 GGTAAAATTATCGAAATACCCTCGATG
* *
22544409 GGT-AAATTATCAAAATACCCTCGACG
1 GGTAAAATTATCGAAATACCCTCGATG
*
22544435 GGTAAAATTATCGAAATACCCT-TATAG
1 GGTAAAATTATCGAAATACCCTCGAT-G
**
22544462 GGTAAAATTATCGAAATACCCTCGAAA
1 GGTAAAATTATCGAAATACCCTCGATG
*
22544489 GGTAAAATTATCGAAATACCCTTGATG
1 GGTAAAATTATCGAAATACCCTCGATG
22544516 GGTAAAATTA-CTGAAATACCCTCGATG
1 GGTAAAATTATC-GAAATACCCTCGATG
22544543 GGTAAAATTATCGAAATACCC-C-ATAG
1 GGTAAAATTATCGAAATACCCTCGAT-G
22544569 GGTAAAATTA
1 GGTAAAATTA
22544579 CCAACATACC
Statistics
Matches: 217, Mismatches: 24, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
25 2 0.01
26 39 0.18
27 172 0.79
28 4 0.02
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (27 bp):
GGTAAAATTATCGAAATACCCTCGATG
Found at i:22544372 original size:54 final size:55
Alignment explanation
Indices: 22544314--22544640 Score: 338
Period size: 54 Copynumber: 6.1 Consensus size: 55
22544304 AAAATGACCG
*
22544314 AAATACCCTCGATGGGTAAAATTA-CTGAAATACTCTCGATA-GGTAAAATTACTA
1 AAATACCCTCGATGGGTAAAATTATC-GAAATACCCTCGATAGGGTAAAATTACTA
* *
22544368 AAATACCCTC-ATAGGGTAAAGTTATCGAAATACCCTTGA-AGGGT-AAATTA-TCA
1 AAATACCCTCGAT-GGGTAAAATTATCGAAATACCCTCGATAGGGTAAAATTACT-A
* * *
22544421 AAATACCCTCGACGGGTAAAATTATCGAAATACCCT-TATAGGGTAAAATTA-TCG
1 AAATACCCTCGATGGGTAAAATTATCGAAATACCCTCGATAGGGTAAAATTACT-A
** * *
22544475 AAATACCCTCGAAAGGTAAAATTATCGAAATACCCTTGAT-GGGTAAAATTACTG
1 AAATACCCTCGATGGGTAAAATTATCGAAATACCCTCGATAGGGTAAAATTACTA
*
22544529 AAATACCCTCGATGGGTAAAATTATCGAAATACCC-C-ATAGGGTAAAATTACCA
1 AAATACCCTCGATGGGTAAAATTATCGAAATACCCTCGATAGGGTAAAATTACTA
* * ** * * * * *
22544582 ACATACCC-CTAAAAGGTAAAATTACCAAAATACCCTC-AAAGGATAAAATGACTA
1 AAATACCCTC-GATGGGTAAAATTATCGAAATACCCTCGATAGGGTAAAATTACTA
22544636 AAATA
1 AAATA
22544641 ACCCATAGGG
Statistics
Matches: 235, Mismatches: 26, Indels: 24
0.82 0.09 0.08
Matches are distributed among these distances:
52 5 0.02
53 86 0.37
54 140 0.60
55 4 0.02
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.24
Consensus pattern (55 bp):
AAATACCCTCGATGGGTAAAATTATCGAAATACCCTCGATAGGGTAAAATTACTA
Found at i:22544500 original size:107 final size:106
Alignment explanation
Indices: 22544314--22544640 Score: 394
Period size: 107 Copynumber: 3.0 Consensus size: 106
22544304 AAAATGACCG
*
22544314 AAATACCCTCGATGGGTAAAATTA-CTGAAATACTCTCGATA-GGTAAAATTACTAAAATACCCT
1 AAATACCCTCGATGGGTAAAATTATC-GAAATACCCTC-ATAGGGTAAAATTAC-AAAATACCCT
* *
22544377 CATAGGGTAAAGTTATCGAAATACCCTTGAAGGGT-AAATTA-TCA
63 CA-AAGGTAAAATTATCGAAATACCCTTGAAGGGTAAAATTACT-A
* * *
22544421 AAATACCCTCGACGGGTAAAATTATCGAAATACCCTTATAGGGTAAAATTATCGAAATACCCTCG
1 AAATACCCTCGATGGGTAAAATTATCGAAATACCCTCATAGGGTAAAATTA-CAAAATACCCTC-
* *
22544486 AAAGGTAAAATTATCGAAATACCCTTGATGGGTAAAATTACTG
64 AAAGGTAAAATTATCGAAATACCCTTGAAGGGTAAAATTACTA
* *
22544529 AAATACCCTCGATGGGTAAAATTATCGAAATACCC-CATAGGGTAAAATTACCAACATACCCCTA
1 AAATACCCTCGATGGGTAAAATTATCGAAATACCCTCATAGGGTAAAATTA-CAAAATA-CCCTC
* * ** * *
22544593 AAAGGTAAAATTACCAAAATACCCTCAAAGGATAAAATGACTA
64 AAAGGTAAAATTATCGAAATACCCTTGAAGGGTAAAATTACTA
22544636 AAATA
1 AAATA
22544641 ACCCATAGGG
Statistics
Matches: 191, Mismatches: 22, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
106 3 0.02
107 140 0.73
108 47 0.25
109 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.24
Consensus pattern (106 bp):
AAATACCCTCGATGGGTAAAATTATCGAAATACCCTCATAGGGTAAAATTACAAAATACCCTCAA
AGGTAAAATTATCGAAATACCCTTGAAGGGTAAAATTACTA
Found at i:22544629 original size:80 final size:79
Alignment explanation
Indices: 22544301--22544655 Score: 274
Period size: 80 Copynumber: 4.4 Consensus size: 79
22544291 TGCGAATTAT
* * * * *
22544301 GGTAAAATGACCGAAATACCCTCGAT-GGGTAAAATTACTGAAATA-CTCTCGATAGGTAAAATT
1 GGTAAAATTATCGAAATACCC-C-ATAGGGTAAAATTAC-CAAATACCCCT-GAAAGGTAAAATT
* *
22544364 ACTAAAATACCCTCATAG
62 ACCAAAATACCCTCAAAG
* * * **
22544382 GGTAAAGTTATCGAAATA-CCCTTGAAGGGT-AAATTATCAAAATA-CCCTCGACGGGTAAAATT
1 GGTAAAATTATCGAAATACCCCAT--AGGGTAAAATTA-CCAAATACCCCT-GAAAGGTAAAATT
* * * *
22544444 ATCGAAATACCCTTATAG
62 ACCAAAATACCCTCAAAG
* * * **
22544462 GGTAAAATTATCGAAATACCCTCGA-AAGGTAAAATTATCGAAATACCCTTGATGGGTAAAATTA
1 GGTAAAATTATCGAAATACCC-C-ATAGGGTAAAATTA-CCAAATACCCCTGAAAGGTAAAATTA
** * *
22544526 CTGAAATACCCTCGATG
63 CCAAAATACCCTCAAAG
*
22544543 GGTAAAATTATCGAAATACCCCATAGGGTAAAATTACCAACATACCCCTAAAAGGTAAAATTACC
1 GGTAAAATTATCGAAATACCCCATAGGGTAAAATTACCAA-ATACCCCTGAAAGGTAAAATTACC
22544608 AAAATACCCTCAAAG
65 AAAATACCCTCAAAG
* * * *
22544623 GATAAAATGA-CTAAAATAACCCATAGGGTAAAA
1 GGTAAAATTATC-GAAATACCCCATAGGGTAAAA
22544656 AGACTGTTAT
Statistics
Matches: 224, Mismatches: 38, Indels: 25
0.78 0.13 0.09
Matches are distributed among these distances:
78 1 0.00
79 6 0.03
80 133 0.59
81 80 0.36
82 4 0.02
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.24
Consensus pattern (79 bp):
GGTAAAATTATCGAAATACCCCATAGGGTAAAATTACCAAATACCCCTGAAAGGTAAAATTACCA
AAATACCCTCAAAG
Found at i:22544638 original size:27 final size:26
Alignment explanation
Indices: 22544301--22544640 Score: 198
Period size: 27 Copynumber: 12.7 Consensus size: 26
22544291 TGCGAATTAT
* * **
22544301 GGTAAAATGACCGAAATACCCTCGATG
1 GGTAAAATTACCAAAATACCCTC-AAA
** * *
22544328 GGTAAAATTACTGAAATACTCTCGATA
1 GGTAAAATTACCAAAATACCCTC-AAA
* *
22544355 GGTAAAATTACTAAAATACCCTCATAG
1 GGTAAAATTACCAAAATACCCTCA-AA
* * * * *
22544382 GGTAAAGTTATCGAAATACCCTTGAAG
1 GGTAAAATTACCAAAATACCC-TCAAA
* **
22544409 GGT-AAATTATCAAAATACCCTCGACG
1 GGTAAAATTACCAAAATACCCTC-AAA
* * * *
22544435 GGTAAAATTATCGAAATACCCTTATAG
1 GGTAAAATTACCAAAATACCCTCA-AA
* *
22544462 GGTAAAATTATCGAAATACCCTCGAAA
1 GGTAAAATTACCAAAATACCCTC-AAA
* * * **
22544489 GGTAAAATTATCGAAATACCCTTGATG
1 GGTAAAATTACCAAAATACCC-TCAAA
** **
22544516 GGTAAAATTACTGAAATACCCTCGATG
1 GGTAAAATTACCAAAATACCCTC-AAA
* * *
22544543 GGTAAAATTATCGAAATACCC-CATAG
1 GGTAAAATTACCAAAATACCCTCA-AA
* *
22544569 GGTAAAATTACCAACATACCCCTAAAA
1 GGTAAAATTACCAAAATA-CCCTCAAA
22544596 GGTAAAATTACCAAAATACCCTCAAA
1 GGTAAAATTACCAAAATACCCTCAAA
* *
22544622 GGATAAAATGACTAAAATA
1 GG-TAAAATTACCAAAATA
22544641 ACCCATAGGG
Statistics
Matches: 261, Mismatches: 40, Indels: 24
0.80 0.12 0.07
Matches are distributed among these distances:
25 2 0.01
26 49 0.19
27 205 0.79
28 5 0.02
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.24
Consensus pattern (26 bp):
GGTAAAATTACCAAAATACCCTCAAA
Found at i:22544921 original size:26 final size:26
Alignment explanation
Indices: 22544891--22544947 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
22544881 TTCAGCTCTA
*
22544891 CTGCGTTACTGTTACTGGCAACTTTG
1 CTGCGTTACTATTACTGGCAACTTTG
* *
22544917 TTGCGTTACTATTACTGGCAGCTTTG
1 CTGCGTTACTATTACTGGCAACTTTG
22544943 CTGCG
1 CTGCG
22544948 ATATTGGTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.14, C:0.23, G:0.25, T:0.39
Consensus pattern (26 bp):
CTGCGTTACTATTACTGGCAACTTTG
Found at i:22545099 original size:28 final size:29
Alignment explanation
Indices: 22545059--22545167 Score: 85
Period size: 30 Copynumber: 3.7 Consensus size: 29
22545049 TTTGTACGGA
*
22545059 TTACTGTTTTGGGCTAAGGCC-CACACTG
1 TTACTGTATTGGGCTAAGGCCACACACTG
* ** *
22545087 TTACTGTATTGGGCTAAGACCTGTACTCTG
1 TTACTGTATTGGGCTAAGGCC-ACACACTG
* * * *
22545117 TTACTATAATGGGCTATAGCCCACACACTA
1 TTACTGTATTGGGCTA-AGGCCACACACTG
* * *
22545147 CTACTGTATAGGGCTCAGGCC
1 TTACTGTATTGGGCTAAGGCC
22545168 TAGACTGATT
Statistics
Matches: 61, Mismatches: 17, Indels: 5
0.73 0.20 0.06
Matches are distributed among these distances:
28 19 0.31
29 4 0.07
30 34 0.56
31 4 0.07
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (29 bp):
TTACTGTATTGGGCTAAGGCCACACACTG
Found at i:22552209 original size:27 final size:27
Alignment explanation
Indices: 22552178--22552535 Score: 239
Period size: 27 Copynumber: 13.3 Consensus size: 27
22552168 TGCAAATTAT
*
22552178 GGTAAAATGACCAAAATACCCTCGATG
1 GGTAAAATTACCAAAATACCCTCGATG
* * * *
22552205 AGTAAAATTATCAAAATACCGTCGAAG
1 GGTAAAATTACCAAAATACCCTCGATG
*
22552232 GGTAAAATTA-CAGAAGTACCCTCGATG
1 GGTAAAATTACCA-AAATACCCTCGATG
* *
22552259 GGTAAAATTACCGAAATACCCTC-ATAA
1 GGTAAAATTACCAAAATACCCTCGAT-G
* * *
22552286 GG-AAAAGTTATCGAAAA-ACCCTTGAAG
1 GGTAAAA-TTA-CCAAAATACCCTCGATG
* * * **
22552313 GGTAGAATTACCGAAATACTCTCGGCG
1 GGTAAAATTACCAAAATACCCTCGATG
* * *
22552340 GGTAAAGTTATCGAAATACCCTC-ATAG
1 GGTAAAATTACCAAAATACCCTCGAT-G
* * * * **
22552367 GGTAAAATTATCGAAATACCTTTGAAA
1 GGTAAAATTACCAAAATACCCTCGATG
*
22552394 GGTAAAATTACCGAAAA-ACTCTCGATG
1 GGTAAAATTACC-AAAATACCCTCGATG
* * *
22552421 GGTAAAATTATCGAAATACCC-CCATAG
1 GGTAAAATTACCAAAATACCCTCGAT-G
** * *
22552448 GGTAAAATTACTGAAATACCCTCAAAG
1 GGTAAAATTACCAAAATACCCTCGATG
* **
22552475 GGTAAAATAACCAAAATACCC-CGAAA
1 GGTAAAATTACCAAAATACCCTCGATG
* *
22552501 GGTAAAATGACTAAAATACCCTC-ATAG
1 GGTAAAATTACCAAAATACCCTCGAT-G
22552528 GGTAAAAT
1 GGTAAAAT
22552536 GACTGTTATA
Statistics
Matches: 256, Mismatches: 59, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
26 41 0.16
27 200 0.78
28 15 0.06
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.22
Consensus pattern (27 bp):
GGTAAAATTACCAAAATACCCTCGATG
Found at i:22552264 original size:54 final size:52
Alignment explanation
Indices: 22552191--22552535 Score: 275
Period size: 54 Copynumber: 6.4 Consensus size: 52
22552181 AAAATGACCA
* * * *
22552191 AAATACCCTCGATGAGTAAAATTATCAAAATACCGTCGAAGGGTAAAATTACAG
1 AAATACCCTCGATGGGTAAAATTACCGAAATACC-TCGAAAGGTAAAATTAC-G
*
22552245 AAGTACCCTCGATGGGTAAAATTACCGAAATACCCTC-ATAAGG-AAAAGTTATCG
1 AAATACCCTCGATGGGTAAAATTACCGAAATA-CCTCGA-AAGGTAAAA-TTA-CG
* * * * *** *
22552299 AAAAACCCTTGAAGGGTAGAATTACCGAAATACTCTCGGCGGGTAAAGTTATCG
1 AAATACCCTCGATGGGTAAAATTACCGAAATAC-CTCGAAAGGTAAAATTA-CG
* *
22552353 AAATACCCTC-ATAGGGTAAAATTATCGAAATACCTTTGAAAGGTAAAATTACCG
1 AAATACCCTCGAT-GGGTAAAATTACCGAAATACC-TCGAAAGGTAAAATTA-CG
* * * * * *
22552407 AAAAACTCTCGATGGGTAAAATTATCGAAATACCCCCATAGGGTAAAATTACTG
1 AAATACCCTCGATGGGTAAAATTACCGAAATACCTCGA-AAGGTAAAATTAC-G
* * * * * * *
22552461 AAATACCCTCAAAGGGTAAAATAACCAAAATACCCCGAAAGGTAAAATGACTA
1 AAATACCCTCGATGGGTAAAATTACCGAAATACCTCGAAAGGTAAAATTAC-G
22552514 AAATACCCTC-ATAGGGTAAAAT
1 AAATACCCTCGAT-GGGTAAAAT
22552536 GACTGTTATA
Statistics
Matches: 235, Mismatches: 43, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
52 1 0.00
53 41 0.17
54 185 0.79
55 8 0.03
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (52 bp):
AAATACCCTCGATGGGTAAAATTACCGAAATACCTCGAAAGGTAAAATTACG
Found at i:22552314 original size:81 final size:81
Alignment explanation
Indices: 22552178--22552535 Score: 332
Period size: 81 Copynumber: 4.4 Consensus size: 81
22552168 TGCAAATTAT
* * * *
22552178 GGTAAAATGACCAAAATACCCTCGATGA-GTAAAATTATC-AAAATACCGTCGAAGGGTAAAATT
1 GGTAAAATTACCGAAATACCCTC-ATAAGGTAAAATTATCGAAAA-ACCCTCGAAGGGTAAAATT
*
22552241 ACAGAAGTACCCTCGATG
64 ACAGAAATACCCTCGATG
* *
22552259 GGTAAAATTACCGAAATACCCTCATAAGG-AAAAGTTATCGAAAAACCCTTGAAGGGTAGAATTA
1 GGTAAAATTACCGAAATACCCTCATAAGGTAAAA-TTATCGAAAAACCCTCGAAGGGTAAAATTA
* * **
22552323 CCGAAATACTCTCGGCG
65 CAGAAATACCCTCGATG
* * * * * * *
22552340 GGTAAAGTTATCGAAATACCCTCATAGGGTAAAATTATCGAAATACCTTTGAAAGGTAAAATTAC
1 GGTAAAATTACCGAAATACCCTCATAAGGTAAAATTATCGAAAAACCCTCGAAGGGTAAAATTAC
* * *
22552405 CGAAAAACTCTCGATG
66 AGAAATACCCTCGATG
* * * * * *
22552421 GGTAAAATTATCGAAATACCCCCATAGGGTAAAATTA-CTGAAATACCCTCAAAGGGTAAAATAA
1 GGTAAAATTACCGAAATACCCTCATAAGGTAAAATTATC-GAAAAACCCTCGAAGGGTAAAATTA
**
22552485 CCA-AAATACCC-CGAAA
65 -CAGAAATACCCTCGATG
* ** *
22552501 GGTAAAATGACTAAAATACCCTCATAGGGTAAAAT
1 GGTAAAATTACCGAAATACCCTCATAAGGTAAAAT
22552536 GACTGTTATA
Statistics
Matches: 233, Mismatches: 38, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
80 41 0.18
81 183 0.79
82 9 0.04
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.22
Consensus pattern (81 bp):
GGTAAAATTACCGAAATACCCTCATAAGGTAAAATTATCGAAAAACCCTCGAAGGGTAAAATTAC
AGAAATACCCTCGATG
Found at i:22552748 original size:26 final size:26
Alignment explanation
Indices: 22552710--22552809 Score: 105
Period size: 26 Copynumber: 3.8 Consensus size: 26
22552700 TTGCGACAAA
* *
22552710 TACTGTTACTGGCAGCTTTGCT-TCGT
1 TACTGATACTGGCAACTTTGCTGT-GT
*
22552736 TATTGATACTGGCAACTTTGCTGTGT
1 TACTGATACTGGCAACTTTGCTGTGT
* *
22552762 TACTGTTACTAGCAACTTTGCTGTGT
1 TACTGATACTGGCAACTTTGCTGTGT
* *
22552788 TACT-ATTACTGACAGCTTTGCT
1 TACTGA-TACTGGCAACTTTGCT
22552810 ATGATATTAG
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 61 0.98
27 1 0.02
ACGTcount: A:0.18, C:0.20, G:0.20, T:0.42
Consensus pattern (26 bp):
TACTGATACTGGCAACTTTGCTGTGT
Found at i:22552798 original size:52 final size:52
Alignment explanation
Indices: 22552710--22552809 Score: 123
Period size: 52 Copynumber: 1.9 Consensus size: 52
22552700 TTGCGACAAA
* * * *
22552710 TACTGTTACTGGCAGCTTTGCTTCGTTATTGATACTGGCAACTTTGCTGTGT
1 TACTGTTACTAGCAACTTTGCTTCGTTACTGATACTGACAACTTTGCTGTGT
*
22552762 TACTGTTACTAGCAACTTTGCTGT-GTTACT-ATTACTGACAGCTTTGCT
1 TACTGTTACTAGCAACTTTGCT-TCGTTACTGA-TACTGACAACTTTGCT
22552810 ATGATATTAG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
51 1 0.02
52 39 0.95
53 1 0.02
ACGTcount: A:0.18, C:0.20, G:0.20, T:0.42
Consensus pattern (52 bp):
TACTGTTACTAGCAACTTTGCTTCGTTACTGATACTGACAACTTTGCTGTGT
Found at i:22558498 original size:36 final size:36
Alignment explanation
Indices: 22558451--22558572 Score: 138
Period size: 36 Copynumber: 3.4 Consensus size: 36
22558441 GTTAGTCTAG
* * * *
22558451 CCAAAACACACCAAATGCTCACACGAGCCAATCCCT
1 CCAAAACACACCAAATGCTCAAAAGAGCTAGTCCCT
* **
22558487 CCAAAACACACC-AATGCTCATAAGAGCTAGTCCAA
1 CCAAAACACACCAAATGCTCAAAAGAGCTAGTCCCT
* * *
22558522 CCGAAACACACCAGATGCTTAAAAGAGCTAGTCCCT
1 CCAAAACACACCAAATGCTCAAAAGAGCTAGTCCCT
*
22558558 CCGAAACACACCAAA
1 CCAAAACACACCAAA
22558573 CATAGAGTAT
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
35 28 0.39
36 44 0.61
ACGTcount: A:0.41, C:0.35, G:0.11, T:0.12
Consensus pattern (36 bp):
CCAAAACACACCAAATGCTCAAAAGAGCTAGTCCCT
Found at i:22562223 original size:10 final size:10
Alignment explanation
Indices: 22562205--22562240 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
22562195 ATAAATAAAT
*
22562205 AAATATATTTA
1 AAAT-TATTAA
22562216 AAATTATTAA
1 AAATTATTAA
22562226 AAATTATTAA
1 AAATTATTAA
22562236 AAATT
1 AAATT
22562241 CTATTTGGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 20 0.83
11 4 0.17
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
AAATTATTAA
Found at i:22567185 original size:28 final size:28
Alignment explanation
Indices: 22567133--22567186 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
22567123 CAACCATGTC
*
22567133 AATATAACACACATAAAGTGATGAATCA
1 AATATAACACACATAAAGTCATGAATCA
*
22567161 AATATAACACGCATAAAG-CATTGAAT
1 AATATAACACACATAAAGTCA-TGAAT
22567187 ATAACATGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 1 0.04
28 22 0.96
ACGTcount: A:0.52, C:0.15, G:0.11, T:0.22
Consensus pattern (28 bp):
AATATAACACACATAAAGTCATGAATCA
Found at i:22568639 original size:17 final size:17
Alignment explanation
Indices: 22568613--22568650 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
22568603 GTAATTCGCG
22568613 TAAATGATCAGA-TCACA
1 TAAATGATCA-ATTCACA
*
22568630 TAAATTATCAATTCACA
1 TAAATGATCAATTCACA
22568647 TAAA
1 TAAA
22568651 ATATATGTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 1 0.05
17 18 0.95
ACGTcount: A:0.50, C:0.16, G:0.05, T:0.29
Consensus pattern (17 bp):
TAAATGATCAATTCACA
Found at i:22568687 original size:17 final size:17
Alignment explanation
Indices: 22568667--22568713 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
22568657 GTTCATATGA
*
22568667 AATAACAGTTTATACAT
1 AATAACAGTTCATACAT
22568684 AATAACAGTTCATACA-
1 AATAACAGTTCATACAT
*
22568700 ATTTAACAGTTCAT
1 A-ATAACAGTTCAT
22568714 TTAGTATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 1 0.04
17 26 0.96
ACGTcount: A:0.45, C:0.15, G:0.06, T:0.34
Consensus pattern (17 bp):
AATAACAGTTCATACAT
Found at i:22569397 original size:18 final size:18
Alignment explanation
Indices: 22569374--22569412 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
22569364 CTCACAATAC
*
22569374 ACAGTTTGACAAATTAAT
1 ACAGTTCGACAAATTAAT
* *
22569392 ACAGTTCGCCATATTAAT
1 ACAGTTCGACAAATTAAT
22569410 ACA
1 ACA
22569413 TATTACCAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (18 bp):
ACAGTTCGACAAATTAAT
Found at i:22570078 original size:29 final size:28
Alignment explanation
Indices: 22570003--22570078 Score: 68
Period size: 29 Copynumber: 2.7 Consensus size: 28
22569993 TTACCAAATC
*
22570003 CCCCATT-TATATATTATACATATAACA
1 CCCCATTATATATATTATACAAATAACA
* *
22570030 -CCCAATATATATACGGTATACAAAATAA-A
1 CCCCATTATATATA--TTATAC-AAATAACA
22570059 CCCCATGTATATATATTATA
1 CCCCAT-TATATATATTATA
22570079 AGTTCATGTA
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
26 5 0.13
27 6 0.16
29 10 0.26
30 9 0.24
31 8 0.21
ACGTcount: A:0.43, C:0.20, G:0.04, T:0.33
Consensus pattern (28 bp):
CCCCATTATATATATTATACAAATAACA
Found at i:22576408 original size:45 final size:45
Alignment explanation
Indices: 22576352--22576461 Score: 130
Period size: 45 Copynumber: 2.4 Consensus size: 45
22576342 AGGAAATGAT
* * * *
22576352 TAAGACCATAGTTAAAAGATACTATGACACTATATCAGAAATAAA
1 TAAGACCATAGTTAAAAGACACTATGACACCATACCAGAAACAAA
* * * *
22576397 TAAGACCATAGTTGAAAGACACTATGGCACCATACCAGAAACGAG
1 TAAGACCATAGTTAAAAGACACTATGACACCATACCAGAAACAAA
* *
22576442 TAAGACCATAGCTGAAAGAC
1 TAAGACCATAGTTAAAAGAC
22576462 GTTATGGCTT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.46, C:0.18, G:0.16, T:0.19
Consensus pattern (45 bp):
TAAGACCATAGTTAAAAGACACTATGACACCATACCAGAAACAAA
Found at i:22576488 original size:45 final size:45
Alignment explanation
Indices: 22576435--22576558 Score: 149
Period size: 45 Copynumber: 2.8 Consensus size: 45
22576425 ACCATACCAG
* * *
22576435 AAACGAGTAAGACCATAGCTGAAAGACGTTATGGCTTCATGATTC
1 AAACGAGTAAAACCATAGCTGAAAGACGTTATGGCATCATGAATC
* * * *
22576480 TAATGAGTAAAACCATAACTGAAAGACGTCATGGCATCATGAATC
1 AAACGAGTAAAACCATAGCTGAAAGACGTTATGGCATCATGAATC
** * *
22576525 AAACGAACAAAACCATAGTTGAAAGACGCTATGG
1 AAACGAGTAAAACCATAGCTGAAAGACGTTATGG
22576559 AAACACAACA
Statistics
Matches: 64, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.41, C:0.18, G:0.20, T:0.21
Consensus pattern (45 bp):
AAACGAGTAAAACCATAGCTGAAAGACGTTATGGCATCATGAATC
Found at i:22576604 original size:46 final size:45
Alignment explanation
Indices: 22576564--22576653 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 45
22576554 TATGGAAACA
*
22576564 CAACAC-AAAATGAATAAGACCATGGTTGAAAGACAATATGGCAT
1 CAACACGAAAATAAATAAGACCATGGTTGAAAGACAATATGGCAT
** * **
22576608 CAAGTCGAGAATAAATAAGACCATGGTTGAAAGACACCATGGCAT
1 CAACACGAAAATAAATAAGACCATGGTTGAAAGACAATATGGCAT
22576653 C
1 C
22576654 TTTCAACCAT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 4 0.10
45 35 0.90
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.18
Consensus pattern (45 bp):
CAACACGAAAATAAATAAGACCATGGTTGAAAGACAATATGGCAT
Found at i:22579732 original size:103 final size:104
Alignment explanation
Indices: 22579394--22579764 Score: 602
Period size: 105 Copynumber: 3.6 Consensus size: 104
22579384 TGTATATAAA
** * * *
22579394 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
**
22579458 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
22579498 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
*
22579563 TTGAAATGAAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
22579603 AGGGGTTGGTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
22579668 TGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* **
22579706 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGGGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
22579765 ATAACGGCTA
Statistics
Matches: 251, Mismatches: 14, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
103 86 0.34
104 69 0.27
105 95 0.38
106 1 0.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:22595495 original size:36 final size:36
Alignment explanation
Indices: 22595453--22595557 Score: 192
Period size: 36 Copynumber: 2.9 Consensus size: 36
22595443 CGGATTTGAG
*
22595453 TACTTATCTGATCAAGTGAGAAAGTGATAAGTGCTA
1 TACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTA
22595489 TACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTA
1 TACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTA
*
22595525 TACTTATCTGATCAAGTGACAAAGTGATAAGTG
1 TACTTATCTGATCAAGTGAAAAAGTGATAAGTG
22595558 GTAGCCTTAG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 67 1.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.30
Consensus pattern (36 bp):
TACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTA
Found at i:22595505 original size:21 final size:20
Alignment explanation
Indices: 22595477--22595542 Score: 52
Period size: 21 Copynumber: 3.5 Consensus size: 20
22595467 AGTGAGAAAG
22595477 TGATAAGTGCTATACTTATC
1 TGATAAGTGCTATACTTATC
* **
22595497 TGATCAAGTG--A-A--AAAG
1 TGAT-AAGTGCTATACTTATC
22595513 TGATAAGTGCTATACTTATC
1 TGATAAGTGCTATACTTATC
22595533 TGATCAAGTG
1 TGAT-AAGTG
22595543 ACAAAGTGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 13
0.63 0.12 0.25
Matches are distributed among these distances:
15 5 0.15
16 5 0.15
17 1 0.03
18 2 0.06
19 1 0.03
20 9 0.27
21 10 0.30
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (20 bp):
TGATAAGTGCTATACTTATC
Found at i:22595629 original size:45 final size:46
Alignment explanation
Indices: 22595521--22595646 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
22595511 AGTGATAAGT
*
22595521 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTA
22595567 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCC-TA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTA
*
22595612 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTG
22595647 ATCATATGTA
Statistics
Matches: 78, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
43 12 0.15
44 5 0.06
45 19 0.24
46 42 0.54
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.28
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTA
Found at i:22597172 original size:37 final size:37
Alignment explanation
Indices: 22597069--22597287 Score: 381
Period size: 37 Copynumber: 6.0 Consensus size: 37
22597059 TACGTATGAT
* *
22597069 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
22597104 CACCTATCACTTTGTTTC-TGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
22597140 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
22597177 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
22597214 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
22597251 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
22597288 TAAAGCTATT
Statistics
Matches: 177, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
35 9 0.05
36 38 0.21
37 130 0.73
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:22597305 original size:46 final size:46
Alignment explanation
Indices: 22597251--22597407 Score: 215
Period size: 46 Copynumber: 3.3 Consensus size: 46
22597241 TAAGTGTAGC
**
22597251 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
22597297 TACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTAT
*
22597343 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTAT
22597395 CACTTATCACTTT
1 CACTTATCACTTT
22597408 CCACTTTCCA
Statistics
Matches: 98, Mismatches: 7, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
46 53 0.54
49 2 0.02
52 43 0.44
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (46 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:22597364 original size:52 final size:52
Alignment explanation
Indices: 22597298--22597618 Score: 369
Period size: 46 Copynumber: 6.2 Consensus size: 52
22597288 TAAAGCTATT
* *
22597298 ACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTTATC
1 ACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATC
*
22597351 ACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATC
1 ACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATC
* * *
22597403 ACTTTCCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCATTTATC
1 AC--T----TTT-CACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATC
22597462 AC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATC
1 ACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATC
*
22597508 AC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATC
1 ACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATC
* * ** *
22597554 ACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATC
1 ACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATC
22597606 ACTTTGTCACTTG
1 ACTTT-TCACTTG
22597619 ATCAGAAGTA
Statistics
Matches: 238, Mismatches: 16, Indels: 28
0.84 0.06 0.10
Matches are distributed among these distances:
46 87 0.37
50 1 0.00
52 86 0.36
53 14 0.06
54 1 0.00
58 3 0.01
59 46 0.19
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
ACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATC
Found at i:22597413 original size:59 final size:58
Alignment explanation
Indices: 22597340--22597466 Score: 209
Period size: 59 Copynumber: 2.2 Consensus size: 58
22597330 TAGCCGAAGC
*
22597340 TATCACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTT-TCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
* *
22597399 TATCACTTTCCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCATT
1 TATCACTTT-CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
22597458 TATCACTTT
1 TATCACTTT
22597467 GTCACTTGAT
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
58 1 0.02
59 63 0.98
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.38
Consensus pattern (58 bp):
TATCACTTTCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
Found at i:22597595 original size:98 final size:97
Alignment explanation
Indices: 22597251--22597624 Score: 443
Period size: 98 Copynumber: 3.7 Consensus size: 97
22597241 TAAGTGTAGC
* * * *
22597251 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATTACTTATCACTTTGTCTCT
1 CACTT-TCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGTCACT
22597316 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
64 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
22597350 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTT
1 CAC-TTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCAC-T-T-A---T-CAC--T
* * *
22597415 CCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCATTTAT
56 ----TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
22597461 CAC--T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTGTCACTTG
1 CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGTCACTTG
*
22597521 ATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 ATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
22597553 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTT-CACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGTCACTT
22597618 GATCAGA
65 GATCAGA
22597625 AGTACTCAAA
Statistics
Matches: 238, Mismatches: 17, Indels: 41
0.80 0.06 0.14
Matches are distributed among these distances:
92 41 0.17
94 1 0.00
96 1 0.00
98 95 0.40
99 9 0.04
100 3 0.01
101 1 0.00
102 1 0.00
103 1 0.00
104 2 0.01
105 40 0.17
107 1 0.00
108 1 0.00
111 41 0.17
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (97 bp):
CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGTCACTTG
ATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:22600338 original size:49 final size:49
Alignment explanation
Indices: 22600266--22600418 Score: 279
Period size: 49 Copynumber: 3.1 Consensus size: 49
22600256 NNNNCACCAA
* *
22600266 ATCACATACCGATGCCATAGCCCAGCTATGGTCTTACACGAAATCACAT
1 ATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT
22600315 ATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT
1 ATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT
22600364 ATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT
1 ATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT
22600413 AATCAC
1 -ATCAC
22600419 ATGTTCACAT
Statistics
Matches: 101, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
49 96 0.95
50 5 0.05
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.24
Consensus pattern (49 bp):
ATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT
Found at i:22604907 original size:16 final size:16
Alignment explanation
Indices: 22604885--22604924 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
22604875 CGTTTGGTTC
22604885 ACTGTAATGGAATAGA
1 ACTGTAATGGAATAGA
* *
22604901 GCTGTAATGGAATATA
1 ACTGTAATGGAATAGA
22604917 ACTGTAAT
1 ACTGTAAT
22604925 AGTAATTCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (16 bp):
ACTGTAATGGAATAGA
Found at i:22605199 original size:55 final size:55
Alignment explanation
Indices: 22605090--22605206 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 55
22605080 GATTATTAAT
* * *
22605090 ATAAATAATAAATAATTTAATCATATTTTAACATAATTATTATTAAATATAATTTA
1 ATAAA-AATAAATAATTTAATAAAATTTTAACAAAATTATTATTAAATATAATTTA
* * * *
22605146 ATAAAAATATATAATTTAATAAAATTCTTAATAAAATTATTCTTATATA-AATTTA
1 ATAAAAATAAATAATTTAATAAAATT-TTAACAAAATTATTATTAAATATAATTTA
*
22605201 CTAAAA
1 ATAAAA
22605207 TCATAATATA
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
55 29 0.56
56 23 0.44
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (55 bp):
ATAAAAATAAATAATTTAATAAAATTTTAACAAAATTATTATTAAATATAATTTA
Found at i:22608527 original size:3 final size:3
Alignment explanation
Indices: 22608519--22608589 Score: 142
Period size: 3 Copynumber: 23.7 Consensus size: 3
22608509 TTTATCGAGC
22608519 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
22608567 TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT
22608590 CAAATCTAAA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 68 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:22610074 original size:33 final size:33
Alignment explanation
Indices: 22610018--22610154 Score: 141
Period size: 33 Copynumber: 4.2 Consensus size: 33
22610008 ACTTACCCCA
*
22610018 TGTTTAATAT-CCAGTGGACTATCTTTGTTCTG
1 TGTTTACTATCCCAGTGGACTATCTTTGTTCTG
* * * * *
22610050 TGTTTACTATTCCAGCGGATTATCTCTATTCTG
1 TGTTTACTATCCCAGTGGACTATCTTTGTTCTG
* * * * * *
22610083 TGTTTACTGTCCCAGTAGATTGTCTATGTTTTG
1 TGTTTACTATCCCAGTGGACTATCTTTGTTCTG
* *
22610116 TGTTTACTGTCCCAGTGAACTATCTTTGTTCTG
1 TGTTTACTATCCCAGTGGACTATCTTTGTTCTG
22610149 TGTTTA
1 TGTTTA
22610155 TTGTCTTAGC
Statistics
Matches: 85, Mismatches: 19, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
32 9 0.11
33 76 0.89
ACGTcount: A:0.17, C:0.18, G:0.18, T:0.47
Consensus pattern (33 bp):
TGTTTACTATCCCAGTGGACTATCTTTGTTCTG
Found at i:22615295 original size:51 final size:51
Alignment explanation
Indices: 22615228--22615329 Score: 152
Period size: 51 Copynumber: 2.0 Consensus size: 51
22615218 CAGATCACAT
*
22615228 TTATCACTTCTCACTTGTC-CTTAATCAGATAAGTGTTGCTAAAGCTACCAC
1 TTATCACTTCTCACTTGTCAC-TAATCAGATAAGTGTAGCTAAAGCTACCAC
* * *
22615279 TTATCACTTGTTACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTCTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTACCAC
22615330 CACTACACCA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 45 0.98
52 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (51 bp):
TTATCACTTCTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTACCAC
Found at i:22615463 original size:42 final size:42
Alignment explanation
Indices: 22615415--22615627 Score: 207
Period size: 42 Copynumber: 5.0 Consensus size: 42
22615405 AAGCGCCGCA
*
22615415 AAAAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTAT
1 AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTAT
* * * * *
22615457 AAAAACGCTGCTAAAGAAAAAGACCTTTAGCGACGTTTTTAT
1 AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTAT
* *
22615499 AAAAATTGCCGCTAAAGAACATGACCTTTAGCGGCGC-TTTACCCA
1 AAAAA-CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTA---T
* * * * *
22615544 AAAAACGTCGCTAAAG-ACATGATCTTTCGCGACGCTTTTTT
1 AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTAT
* * *
22615585 CACAAACGCTGCTAAA-AAGCATGACCTTTAGTGGCGCTTTTAT
1 -AAAAACGCCGCTAAAGAA-CATGACCTTTAGCGGCGCTTTTAT
22615628 CGCAAACGCC
Statistics
Matches: 137, Mismatches: 26, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
42 60 0.44
43 60 0.44
44 12 0.09
45 5 0.04
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTAT
Found at i:22631191 original size:17 final size:18
Alignment explanation
Indices: 22631171--22631220 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 18
22631161 ATATTGACAC
22631171 AATTGTATTATTTTAA-A
1 AATTGTATTATTTTAACA
*
22631188 AA-T-TATTGCTTTTAACA
1 AATTGTATT-ATTTTAACA
22631205 AATTTGTATTATTTTA
1 AA-TTGTATTATTTTA
22631221 TTTTAAAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
15 4 0.15
16 7 0.27
17 5 0.19
19 6 0.23
20 4 0.15
ACGTcount: A:0.36, C:0.04, G:0.06, T:0.54
Consensus pattern (18 bp):
AATTGTATTATTTTAACA
Found at i:22635777 original size:72 final size:72
Alignment explanation
Indices: 22635654--22635892 Score: 365
Period size: 72 Copynumber: 3.3 Consensus size: 72
22635644 AAAATCATAT
** *
22635654 ATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGTAGAACATAAATTCAATATCTAAA
1 ATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
*
22635717 GACCAAAC
65 AACCAAAC
*
22635725 ATAAACAACTATTAATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
22635790 ACCAAAC
66 ACCAAAC
* * * *
22635797 ATAAACAGCCATTGATAAAACTAGATTACACATAAATAAGTAAAACGTAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
22635862 ACCAAAC
66 ACCAAAC
*
22635869 ATAAATAACTATTGATAAAACTAG
1 ATAAACAACTATTGATAAAACTAG
22635893 TTTAGCATTG
Statistics
Matches: 153, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
71 25 0.16
72 128 0.84
ACGTcount: A:0.55, C:0.15, G:0.06, T:0.24
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:22639969 original size:16 final size:16
Alignment explanation
Indices: 22639950--22639984 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
22639940 TTACACTGAA
22639950 AAATAATAAAATAAAT
1 AAATAATAAAATAAAT
* *
22639966 AAATAATATATTAAAT
1 AAATAATAAAATAAAT
22639982 AAA
1 AAA
22639985 AAAATAACTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAATAATAAAATAAAT
Found at i:22651315 original size:18 final size:18
Alignment explanation
Indices: 22651288--22651347 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
22651278 TATTATTTTG
22651288 AAATTAAAAATATATAAA
1 AAATTAAAAATATATAAA
*
22651306 AAATTTAAAATATATAAA
1 AAATTAAAAATATATAAA
**
22651324 TTATTAAAAAACTCATATAAA
1 AAATT-AAAAA-T-ATATAAA
22651345 AAA
1 AAA
22651348 AAACTTAAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
18 20 0.61
19 4 0.12
20 1 0.03
21 8 0.24
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (18 bp):
AAATTAAAAATATATAAA
Found at i:22652521 original size:25 final size:25
Alignment explanation
Indices: 22652479--22652531 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
22652469 ATGAAAACAT
*
22652479 AAATAAATAAATAAATAAATAGAGA
1 AAATAAATAAATAAATAAAAAGAGA
* ** *
22652504 AAATGAATAAATTTATAAAAAGATA
1 AAATAAATAAATAAATAAAAAGAGA
22652529 AAA
1 AAA
22652532 AGATATATAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.70, C:0.00, G:0.08, T:0.23
Consensus pattern (25 bp):
AAATAAATAAATAAATAAAAAGAGA
Found at i:22652693 original size:43 final size:43
Alignment explanation
Indices: 22652640--22652721 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
22652630 ATATGTATAT
*
22652640 AAATTATAAAATATA-AAA-ATATATAAGTATGTGTATATACATA
1 AAATTATAAAA-ATACAAAGA-ATATAAGTATGTATATATACATA
* *
22652683 AAATTGTAAAAATACAAAGAATATATGTATGTATATATA
1 AAATTATAAAAATACAAAGAATATAAGTATGTATATATA
22652722 TAATGAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 3 0.09
43 30 0.88
44 1 0.03
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (43 bp):
AAATTATAAAAATACAAAGAATATAAGTATGTATATATACATA
Found at i:22652758 original size:3 final size:3
Alignment explanation
Indices: 22652750--22652791 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
22652740 AAAGATATAC
* *
22652750 ATA ATA ATA ATG GTA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
22652792 TCAAATTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:22653180 original size:22 final size:22
Alignment explanation
Indices: 22653152--22653233 Score: 119
Period size: 22 Copynumber: 3.7 Consensus size: 22
22653142 GGTTGAGAAA
22653152 CATGAGAGCTTAGTACGTTAGC
1 CATGAGAGCTTAGTACGTTAGC
22653174 CATGAGAGCTTAGTACGTTAGC
1 CATGAGAGCTTAGTACGTTAGC
* * * **
22653196 CATGAGGGTTTAGTTCGTTAAA
1 CATGAGAGCTTAGTACGTTAGC
22653218 CATGAGAGCTTAGTAC
1 CATGAGAGCTTAGTAC
22653234 AAAGAACTTC
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (22 bp):
CATGAGAGCTTAGTACGTTAGC
Found at i:22653982 original size:30 final size:31
Alignment explanation
Indices: 22653914--22653982 Score: 81
Period size: 28 Copynumber: 2.3 Consensus size: 31
22653904 TAGGTTTAAT
*
22653914 TTTGTTGGGTTATATTTGGGTTTTAGGTTGG
1 TTTGTTGGGTTATATTTGGGTTTAAGGTTGG
* *
22653945 -TTATTGGG-T-TATTTGGGTTTAAGTTTGGG
1 TTTGTTGGGTTATATTTGGGTTTAAGGTT-GG
22653974 TTTGTTGGG
1 TTTGTTGGG
22653983 CCCCGAGTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
28 15 0.47
29 3 0.09
30 14 0.44
ACGTcount: A:0.10, C:0.00, G:0.36, T:0.54
Consensus pattern (31 bp):
TTTGTTGGGTTATATTTGGGTTTAAGGTTGG
Found at i:22654501 original size:50 final size:50
Alignment explanation
Indices: 22654397--22654812 Score: 296
Period size: 50 Copynumber: 8.4 Consensus size: 50
22654387 CTGTTCACTA
** * ** * ** *
22654397 GGGAAGTAAGATTCGTTGTTGTAGCTTCAATCTATTTAAATGCAATG-TT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT
* ** * *
22654446 GGGGAAGCAAGATTCGCTATTGTAGCTTTAATCTATTCCACTGCACCGCCT
1 -GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT
* * * *
22654497 GGGAAGTAAGATTCGCCG-T-TACGACTTTAATCT-TTGCAATG--TCG---
1 GGGAAGTAAGATTCGCCGTTGTA-G-CTTCAATCTGTTCCACTGCACCGCCT
* *
22654541 AGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCG-CT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT
* * * * ** * ** *
22654590 AGGGAAGTAAGATTCGTCGTTGTGGCTTCAATTTTTTTAATTGCAATGTC-
1 -GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT
* *
22654640 GAGGAAGTAAGATTCACCGTTGTAGCTTCAATTTGTTCCACTGCACCGCCT
1 G-GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT
* * * ** * ** * *
22654691 GGGAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTTAATTGCAATGTCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT
**
22654741 GGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT
* *
22654791 GGAAAGTAAGATTCACCGTTGT
1 GGGAAGTAAGATTCGCCGTTGT
22654813 GGCCTTAATC
Statistics
Matches: 281, Mismatches: 71, Indels: 28
0.74 0.19 0.07
Matches are distributed among these distances:
44 24 0.09
45 8 0.03
46 2 0.01
47 4 0.01
48 2 0.01
49 9 0.03
50 229 0.81
51 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.32
Consensus pattern (50 bp):
GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT
Found at i:22654665 original size:100 final size:100
Alignment explanation
Indices: 22654530--22654880 Score: 503
Period size: 100 Copynumber: 3.5 Consensus size: 100
22654520 ACTTTAATCT
*
22654530 TTGCAATGTCGAGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCG-CTAGGG
1 TTGCAATGTCGAGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT-GGG
*
22654594 AAGTAAGATTCGTCGTTGTGGCTTCAATTTTTTTAA
65 AAGTAAGATTCGCCGTTGTGGCTTCAATTTTTTTAA
* *
22654630 TTGCAATGTCGAGGAAGTAAGATTCACCGTTGTAGCTTCAATTTGTTCCACTGCACCGCCTGGGA
1 TTGCAATGTCGAGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGGA
* *
22654695 AGTAAGATTCGCCGTTGTGGCCTCAATCTTTTTAA
66 AGTAAGATTCGCCGTTGTGGCTTCAATTTTTTTAA
* * * *
22654730 TTGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGAA
1 TTGCAATGTCGAGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGGA
* *
22654795 AGTAAGATTCACCGTTGTGGCCTT-AA-TCTTTTAA
66 AGTAAGATTCGCCGTTGTGG-CTTCAATTTTTTTAA
* * **
22654829 TTGTAATGTC-AGGGAAGCGAGATTCATTGTTGTAGCTTCAATCTGTTCCACT
1 TTGCAATGTCGA-GGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACT
22654881 ACACTACCTG
Statistics
Matches: 227, Mismatches: 21, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
99 52 0.23
100 171 0.75
101 4 0.02
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (100 bp):
TTGCAATGTCGAGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGGA
AGTAAGATTCGCCGTTGTGGCTTCAATTTTTTTAA
Found at i:22655049 original size:128 final size:128
Alignment explanation
Indices: 22654890--22655423 Score: 865
Period size: 128 Copynumber: 4.2 Consensus size: 128
22654880 TACACTACCT
* * * * * *
22654890 GGGAGATAATATTGGTTGCGATCTACTCTACTGCAAGTTCAGAGAGATAAGATCTGTGTTTTTAA
1 GGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
* *
22654955 TCCGCTCCACTGTAACTTCAAGGAGATAGAATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
66 TCCGCTCCACTGCAACTTCAAGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
*
22655018 GGGAGATAAGACTGGATACGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
1 GGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
* * * *
22655083 TCCGCTCTACTTCAAATTC-AGGAAGATAGGATTGATTTCTTCTGTCTGCTCTACTACTGCTTA
66 TCCGCTCCACTGCAACTTCAAGG-AGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
*
22655146 GGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTTAGAG-GTATAAGATCTGTGATTTTA
1 GGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAG-ATAAGATCTGTGATTTTA
* *
22655210 ATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCTTTCTGCTCCACTACTGCTTA
65 ATCCGCTCCACTGCAACTTCAAGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
*
22655274 AGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
1 GGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
* *
22655339 TCCGCTCCACTGCAACTTCAGGGAGATAGGATTAATTTCTTCTGTCTGCTCCACTACTGCTTA
66 TCCGCTCCACTGCAACTTCAAGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
22655402 GGGAGATAAGACTGGATGCGAT
1 GGGAGATAAGACTGGATGCGAT
22655424 AAATCTGCTT
Statistics
Matches: 376, Mismatches: 26, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
127 4 0.01
128 369 0.98
129 3 0.01
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (128 bp):
GGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
TCCGCTCCACTGCAACTTCAAGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTA
Found at i:22655262 original size:44 final size:43
Alignment explanation
Indices: 22654910--22655412 Score: 161
Period size: 44 Copynumber: 11.7 Consensus size: 43
22654900 ATTGGTTGCG
* * * *
22654910 ATCTACTCTACTGCAAGTTCAGAGAGATAAGATCTG-TGTTTT-T
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGAT-TTTTCT
* * *
22654953 AATCCGCTCCACTGTAACTTCAAGGAGAT-AGAATTGATTTCTTCT
1 -ATCTGCTCCACTGCAACTTCAGGGAGATAAG-ATTGATTT-TTCT
* * ** * * *
22654998 GTCTGCTCCACTACTGCTT-AGGGAGATAAGACTGGA---TACG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGATTTTTCT
* * *
22655038 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG-TGATTTT-A
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGAT--TTTTCT
* * * * * *
22655082 ATCCGCTCTACTTCAAATTCAGGAAGATAGGATTGATTTCTTCT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGATTT-TTCT
* * * ** * * *
22655126 GTCTGCTCTACTACTGCTT-AGGGAGATAAGACTGGA---TGCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGATTTTTCT
* * * *
22655166 ATCTGCTCTACTGCAACTTTAGAGG-TATAAGATCTG-TGATTTT-A
1 ATCTGCTCCACTGCAACTTCAG-GGAGATAAGAT-TGAT--TTTTCT
* *
22655210 ATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGATTT-TTCT
* * ** * * * *
22655254 TTCTGCTCCACTACTGCTT-AAGGAGATAAGACTGGA---TGCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGATTTTTCT
* * *
22655294 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG-TGATTTT-A
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGAT--TTTTCT
* * *
22655338 ATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAATTTCTTCT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGATTT-TTCT
* * **
22655382 GTCTGCTCCACTACTGCTT-AGGGAGATAAGA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA
22655413 CTGGATGCGA
Statistics
Matches: 329, Mismatches: 90, Indels: 81
0.66 0.18 0.16
Matches are distributed among these distances:
40 52 0.16
41 32 0.10
42 8 0.02
43 58 0.18
44 175 0.53
45 4 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (43 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGATTTTTCT
Found at i:22655431 original size:44 final size:44
Alignment explanation
Indices: 22655383--22655500 Score: 100
Period size: 44 Copynumber: 2.7 Consensus size: 44
22655373 ATTTCTTCTG
* *
22655383 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATG-CGATAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTCGACGTC-ATAAA
* * * * **
22655427 TCTGCTTCCTACTA-T-C-TCGGGATGATAAGATTCGCCGTCTTCGA
1 TCTGC-TCC-ACTACTGCTTAGGGA-GATAAGACTCGACGTCATAAA
22655471 TCTGCTCCACTACTGCTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
22655501 TCTACAATCT
Statistics
Matches: 58, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
42 4 0.07
43 9 0.16
44 31 0.53
45 10 0.17
46 4 0.07
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.29
Consensus pattern (44 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTCGACGTCATAAA
Found at i:22655926 original size:24 final size:24
Alignment explanation
Indices: 22655873--22655929 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
22655863 GGATTGCCCT
22655873 CACTGTAATCTTCAAAGTTCAATC
1 CACTGTAATCTTCAAAGTTCAATC
* * *
22655897 CGCTGTAGTCTTCAAGGTT-AAGTC
1 CACTGTAATCTTCAAAGTTCAA-TC
22655921 CACTGTAAT
1 CACTGTAAT
22655930 TTTGGAACAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 2 0.07
24 25 0.93
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (24 bp):
CACTGTAATCTTCAAAGTTCAATC
Found at i:22656793 original size:11 final size:11
Alignment explanation
Indices: 22656778--22656850 Score: 69
Period size: 11 Copynumber: 6.5 Consensus size: 11
22656768 GCCTCTCCTT
22656778 TTTTTCTTTT-
1 TTTTTCTTTTA
22656788 TCTTTTCTTTTTA
1 T-TTTTC-TTTTA
* *
22656801 TTCTTTATTCT-
1 TT-TTTCTTTTA
*
22656812 TTATTCTTTTTA
1 TTTTTC-TTTTA
22656824 TTTTTCTTTTA
1 TTTTTCTTTTA
22656835 TTTTTCTTTTA
1 TTTTTCTTTTA
22656846 TTTTT
1 TTTTT
22656851 TTTAACATTC
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
10 3 0.06
11 31 0.61
12 13 0.25
13 4 0.08
ACGTcount: A:0.08, C:0.11, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTTCTTTTA
Found at i:22656804 original size:14 final size:13
Alignment explanation
Indices: 22656775--22656854 Score: 63
Period size: 14 Copynumber: 5.8 Consensus size: 13
22656765 TTGGCCTCTC
*
22656775 CTTTTTTTCTTTTT
1 CTTTTTTT-TTATT
22656789 CTTTTCTTTTTATT
1 CTTTT-TTTTTATT
*
22656803 CTTTATTCTTTATT
1 CTTT-TTTTTTATT
*
22656817 CTTTTTATTT-TT
1 CTTTTTTTTTATT
*
22656829 CTTTTATTTTTCTT
1 CTTTT-TTTTTATT
*
22656843 TTATTTTTTTTA
1 CT-TTTTTTTTA
22656855 ACATTCTTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
12 7 0.13
13 9 0.16
14 32 0.58
15 7 0.13
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.80
Consensus pattern (13 bp):
CTTTTTTTTTATT
Found at i:22657303 original size:16 final size:17
Alignment explanation
Indices: 22657282--22657320 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
22657272 CCCGGTAGAG
22657282 TTTTTTGTTTTTT-TATT
1 TTTTTTGTTTTTTGT-TT
22657299 TTTTTTGTTTTTTGTTT
1 TTTTTTGTTTTTTGTTT
22657316 TTTTT
1 TTTTT
22657321 GCCTCCACTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 20 0.95
18 1 0.05
ACGTcount: A:0.03, C:0.00, G:0.08, T:0.90
Consensus pattern (17 bp):
TTTTTTGTTTTTTGTTT
Found at i:22657321 original size:16 final size:17
Alignment explanation
Indices: 22657282--22657321 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
22657272 CCCGGTAGAG
22657282 TTTTTTGTTTTTTTATT
1 TTTTTTGTTTTTTTATT
*
22657299 TTTTTTG-TTTTTTGTT
1 TTTTTTGTTTTTTTATT
22657315 TTTTTTG
1 TTTTTTG
22657322 CCTCCACTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.03, C:0.00, G:0.10, T:0.88
Consensus pattern (17 bp):
TTTTTTGTTTTTTTATT
Found at i:22660085 original size:19 final size:20
Alignment explanation
Indices: 22660061--22660107 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
22660051 TGTGAAAATC
*
22660061 TAATGCATATG-ATGCAATG
1 TAATGCAAATGTATGCAATG
*
22660080 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGCAATG
22660100 -AATGCAAA
1 TAATGCAAA
22660108 AAGAAAGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGTATGCAATG
Found at i:22662371 original size:37 final size:37
Alignment explanation
Indices: 22662299--22662371 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
22662289 AAAATGAATA
*
22662299 AAATTATAAAAATATAAAAAGATATATATGTATATAC
1 AAATTATAAAAATATAAAAAGATATATATGAATATAC
22662336 AAATTAT-AAAATATAAAAA-ATATATATAAGAATATA
1 AAATTATAAAAATATAAAAAGATATATAT--GAATATA
22662372 TATATACATT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
35 8 0.24
36 12 0.36
37 13 0.39
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (37 bp):
AAATTATAAAAATATAAAAAGATATATATGAATATAC
Found at i:22662547 original size:3 final size:3
Alignment explanation
Indices: 22662539--22662604 Score: 105
Period size: 3 Copynumber: 22.0 Consensus size: 3
22662529 AAAGATATAC
* * *
22662539 ATA ATA ATA GTA ATA GTA ATA GTA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
22662587 ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA
22662605 TCAAATTTAT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:22663799 original size:30 final size:31
Alignment explanation
Indices: 22663731--22663799 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 31
22663721 TAGGTTTAAT
* *
22663731 TTTGTTGGGTTATATTTGGGTTTTAGGTTGG
1 TTTGTTGGGTTATATTTAGGTTTAAGGTTGG
* *
22663762 -TTATTGGG-T-TATTTAGGTTTAAGTTTGGG
1 TTTGTTGGGTTATATTTAGGTTTAAGGTT-GG
22663791 TTTGTTGGG
1 TTTGTTGGG
22663800 CCCCGGGTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
28 14 0.45
29 3 0.10
30 14 0.45
ACGTcount: A:0.12, C:0.00, G:0.35, T:0.54
Consensus pattern (31 bp):
TTTGTTGGGTTATATTTAGGTTTAAGGTTGG
Done.