Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55868233
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 983842 characters in sequence are not A, C, G, or T
File 83 of 187
Found at i:24741758 original size:18 final size:17
Alignment explanation
Indices: 24741730--24741764 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24741720 ATTATTAAGA
*
24741730 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24741747 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24741765 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24741897 original size:119 final size:122
Alignment explanation
Indices: 24741680--24741905 Score: 395
Period size: 119 Copynumber: 1.9 Consensus size: 122
24741670 NNNNNNNNNN
* *
24741680 CATATATTATGATTTTTAGTAAATTCATATAAGAATTTTGATTATTAAGAATTTTATTAAATTAT
1 CATATATTATGATTTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTAT
24741745 ATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAATTATATTTTATAGTAT
66 ATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATTATATTTTATAGTAT
24741801 CATATATTATGA-TTTGAGTAAATTCATATAAG-ATATTGATTATTAAGAATTTTATTAAATTAT
1 CATATATTATGATTTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTAT
* *
24741864 ATATTTTAATTATAATATATTTAATAATTATTATGTTTAAAT
66 ATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
24741906 ATAATTAAAT
Statistics
Matches: 100, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
119 63 0.63
120 25 0.25
121 12 0.12
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (122 bp):
CATATATTATGATTTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTAT
ATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATTATATTTTATAGTAT
Found at i:24742099 original size:44 final size:45
Alignment explanation
Indices: 24742051--24742139 Score: 126
Period size: 45 Copynumber: 2.0 Consensus size: 45
24742041 TCTATTCCAT
* *
24742051 TCAACCAAACACAAGA-TTATTATTACGCCTCTATTCCATTACAC
1 TCAACCAAACACAAGATTTACTATTACACCTCTATTCCATTACAC
***
24742095 TCAACCAAACAGTTGATTTACTATTACACCTCTATTCCATTACAC
1 TCAACCAAACACAAGATTTACTATTACACCTCTATTCCATTACAC
24742140 CTCTATTCCA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 13 0.33
45 26 0.67
ACGTcount: A:0.35, C:0.29, G:0.04, T:0.31
Consensus pattern (45 bp):
TCAACCAAACACAAGATTTACTATTACACCTCTATTCCATTACAC
Found at i:24742138 original size:16 final size:16
Alignment explanation
Indices: 24742117--24742186 Score: 104
Period size: 16 Copynumber: 4.4 Consensus size: 16
24742107 TTGATTTACT
*
24742117 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
*
24742133 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
24742149 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
24742165 AATACACCTCTAATCC
1 ATTACACCTCTAATCC
*
24742181 AATACA
1 ATTACA
24742187 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 52 1.00
ACGTcount: A:0.33, C:0.36, G:0.00, T:0.31
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:24745516 original size:29 final size:29
Alignment explanation
Indices: 24745452--24745520 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
24745442 GTGGTTTGTG
* *
24745452 AAAATTGAATAAAATCAAATTTCATATAT
1 AAAATTGCACAAAATCAAATTTCATATAT
*
24745481 AAAATTGCACAAAATCAATATTT-ATGTAT
1 AAAATTGCACAAAATCAA-ATTTCATATAT
* *
24745510 GACATTGCACA
1 AAAATTGCACA
24745521 TTAGATCAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 30 0.88
30 4 0.12
ACGTcount: A:0.49, C:0.12, G:0.07, T:0.32
Consensus pattern (29 bp):
AAAATTGCACAAAATCAAATTTCATATAT
Found at i:24749559 original size:3 final size:3
Alignment explanation
Indices: 24749551--24749587 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
24749541 CCAGCTGGGT
24749551 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
24749588 ATGAAGATAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:24750536 original size:20 final size:20
Alignment explanation
Indices: 24750511--24750548 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
24750501 TTGTTGTTTT
24750511 TTGAAAGTTGAGTGACTGAA
1 TTGAAAGTTGAGTGACTGAA
24750531 TTGAAAGTTGAGTGACTG
1 TTGAAAGTTGAGTGACTG
24750549 TTGGTGTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.05, G:0.32, T:0.32
Consensus pattern (20 bp):
TTGAAAGTTGAGTGACTGAA
Found at i:24751863 original size:2 final size:2
Alignment explanation
Indices: 24751856--24751889 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
24751846 TGTCAACATC
24751856 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24751890 ACATGTTACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24752795 original size:36 final size:34
Alignment explanation
Indices: 24752755--24752839 Score: 89
Period size: 37 Copynumber: 2.4 Consensus size: 34
24752745 TATTTTTAAA
* *
24752755 TATTTTTATAATTCTTATAAGTTTCTTATAATATTC
1 TATTTTTATAATTCTTATAACTTT-TAAT-ATATTC
* *
24752791 TATTTTTTATAATTTTTTATAACTTTTAATATTTTC
1 TA-TTTTTATAA-TTCTTATAACTTTTAATATATTC
*
24752827 TATTTATATAATT
1 TATTTTTATAATT
24752840 TTCTTTTTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
34 2 0.05
35 8 0.19
36 9 0.21
37 12 0.29
38 11 0.26
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.62
Consensus pattern (34 bp):
TATTTTTATAATTCTTATAACTTTTAATATATTC
Found at i:24752807 original size:10 final size:10
Alignment explanation
Indices: 24752734--24752916 Score: 63
Period size: 9 Copynumber: 19.0 Consensus size: 10
24752724 ACAAAAAGTA
*
24752734 ATAATTTTAT
1 ATAATTTTTT
24752744 AT-A-TTTTT
1 ATAATTTTTT
24752752 A-AATATTTTT
1 ATAAT-TTTTT
*
24752762 ATAA-TTCTT
1 ATAATTTTTT
*
24752771 ATAAGTTTCTT
1 ATAA-TTTTTT
*
24752782 ATAA--TATT
1 ATAATTTTTT
*
24752790 CT-ATTTTTT
1 ATAATTTTTT
24752799 ATAATTTTTT
1 ATAATTTTTT
* *
24752809 ATAACTTTTA
1 ATAATTTTTT
24752819 AT-ATTTTCTAT
1 ATAATTTT-T-T
* *
24752830 TTATATAATTTT
1 ATA-AT-TTTTT
*
24752842 CT--TTTTTT
1 ATAATTTTTT
24752850 AT--TTTTATT
1 ATAATTTT-TT
*
24752859 ATAATTTCTT
1 ATAATTTTTT
* *
24752869 AAAATTTCTT
1 ATAATTTTTT
*
24752879 A-ATTTTTTT
1 ATAATTTTTT
24752888 ATAA-TTTTT
1 ATAATTTTTT
24752897 AT-ATTTTTT
1 ATAATTTTTT
24752906 AGTAATTTTTT
1 A-TAATTTTTT
24752917 GTTTTAAAAT
Statistics
Matches: 132, Mismatches: 20, Indels: 41
0.68 0.10 0.21
Matches are distributed among these distances:
7 1 0.01
8 20 0.15
9 42 0.32
10 40 0.30
11 22 0.17
12 2 0.02
13 3 0.02
14 2 0.02
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:24752877 original size:50 final size:51
Alignment explanation
Indices: 24752781--24752877 Score: 119
Period size: 50 Copynumber: 1.9 Consensus size: 51
24752771 ATAAGTTTCT
*
24752781 TATAATATTCTATTTTTTATAATTTTTTATAACTTTTAATATTTTCTATTTA
1 TATAATATTCTATTTTTTAT-ATTTTTTATAACTTTTAATAATTTCTATTTA
* *
24752833 TATAATTTTCT-TTTTTTAT-TTTTATTATAATTTCTTAA-AATTTCT
1 TATAATATTCTATTTTTTATATTTT-TTATAACTT-TTAATAATTTCT
24752878 TAATTTTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
49 4 0.10
50 14 0.35
51 12 0.30
52 10 0.25
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (51 bp):
TATAATATTCTATTTTTTATATTTTTTATAACTTTTAATAATTTCTATTTA
Found at i:24752899 original size:38 final size:37
Alignment explanation
Indices: 24752843--24753006 Score: 111
Period size: 38 Copynumber: 4.4 Consensus size: 37
24752833 TATAATTTTC
* *
24752843 TTTTTTTAT-TTTTATTATAATTTCTTA-AAATTTCTTAA
1 TTTTTTTATAATTT-TTAT-ATTTTTTAGAAATTT-TTAA
* **
24752881 TTTTTTTATAATTTTTATATTTTTTAGTAATTTTTTG
1 TTTTTTTATAATTTTTATATTTTTTAGAAATTTTTAA
*** * ** *
24752918 TTTTAAAATAATTTTTAGAATTTAATATAAATTTTTAA
1 TTTTTTTATAATTTTTA-TATTTTTTAGAAATTTTTAA
**
24752956 TAATTTTATAATTTTCTATATCTTTTTA-AAA-TTTTAA
1 TTTTTTTATAATTTT-TATAT-TTTTTAGAAATTTTTAA
*
24752993 TATTTTTATAATTT
1 TTTTTTTATAATTT
24753007 GCTGACGTGG
Statistics
Matches: 97, Mismatches: 24, Indels: 11
0.73 0.18 0.08
Matches are distributed among these distances:
37 42 0.43
38 46 0.47
39 9 0.09
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (37 bp):
TTTTTTTATAATTTTTATATTTTTTAGAAATTTTTAA
Found at i:24752902 original size:19 final size:19
Alignment explanation
Indices: 24752734--24752999 Score: 86
Period size: 19 Copynumber: 13.9 Consensus size: 19
24752724 ACAAAAAGTA
*
24752734 ATAA-TTTTATATATTTTT
1 ATAATTTTTATATTTTTTT
* * *
24752752 AAATATTTTTATA-ATTCTT
1 ATA-ATTTTTATATTTTTTT
* * *
24752771 ATAAGTTTCTTATAATATTCT
1 ATAA-TTT-TTATATTTTTTT
*
24752792 AT--TTTTTATAATTTTTT
1 ATAATTTTTATATTTTTTT
*
24752809 ATAACTTTTAATATTTTCTATT
1 ATAA-TTTTTATATTTT-T-TT
* *
24752831 -TATATAATTT-TCTTTTTTT
1 ATA-AT-TTTTATATTTTTTT
* * *
24752850 AT-TTTTATTATAATTTCTT
1 ATAATTT-TTATATTTTTTT
*
24752869 AAAATTTCTTA-ATTTTTTT
1 ATAATTT-TTATATTTTTTT
24752888 ATAATTTTTATA-TTTTTT
1 ATAATTTTTATATTTTTTT
* ***
24752906 AGTAATTTTT-TGTTTTAAA
1 A-TAATTTTTATATTTTTTT
* * **
24752925 ATAATTTTTAGAATTTAAT
1 ATAATTTTTATATTTTTTT
**
24752944 ATAAATTTTTA-ATAATTTT
1 AT-AATTTTTATATTTTTTT
*
24752963 ATAATTTTCTATATCTTTTT
1 ATAATTTT-TATATTTTTTT
* *
24752983 AAAATTTTAATATTTTT
1 ATAATTTTTATATTTTT
24753000 ATAATTTGCT
Statistics
Matches: 182, Mismatches: 43, Indels: 45
0.67 0.16 0.17
Matches are distributed among these distances:
17 13 0.07
18 34 0.19
19 66 0.36
20 51 0.28
21 13 0.07
22 5 0.03
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.63
Consensus pattern (19 bp):
ATAATTTTTATATTTTTTT
Found at i:24752968 original size:29 final size:29
Alignment explanation
Indices: 24752924--24752991 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
24752914 TTTGTTTTAA
24752924 AATAATTTTTAGAATTTAATATAAATTTTT
1 AATAA-TTTTAGAATTTAATATAAATTTTT
* ** **
24752954 AATAATTTTATAATTTTCTATATCTTTTT
1 AATAATTTTAGAATTTAATATAAATTTTT
24752983 AA-AATTTTA
1 AATAATTTTA
24752992 ATATTTTTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 7 0.21
29 21 0.64
30 5 0.15
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (29 bp):
AATAATTTTAGAATTTAATATAAATTTTT
Found at i:24754108 original size:189 final size:185
Alignment explanation
Indices: 24753792--24754133 Score: 542
Period size: 189 Copynumber: 1.8 Consensus size: 185
24753782 ATTTGGTGCT
*
24753792 TGTAGTAATTTCATTTAAGTACACTTATAATTTTTTCGAATAGGTTAATAAAATTATTCATGAAT
1 TGTAGTAATTTCATCTAAGTACACTTATAATTTTTTCGAATAGGTTAATAAAATTATTCATGAAT
* * *
24753857 TACATTAATACTTTGTATATTGTCCTCACATGGTCTTTGGACGTAAAATATAATGGAAGCAAATG
66 TACATTAATACTTTGTATATTGTCCTCACATGGTCTTTGCACGCAAAATAAAATGGAAGCAAATG
*
24753922 TTGCTCATTGGTTGTTTAATGTTTAACTAATACTAAGCGGTATTATTACCTTAAG
131 TTGCTCATTGGTTGTCTAATGTTTAACTAATACTAAGCGGTATTATTACCTTAAG
* *
24753977 TGTAGTAATTTCATCTAAGTATACTTATAATTTTTT-GAAACAGATTGGTTAATAAAATTATTCA
1 TGTAGTAATTTCATCTAAGTACACTTATAATTTTTTCG----A-ATAGGTTAATAAAATTATTCA
* * *
24754041 TGAATTACATTAATATTTTGTATATTGTCCTCACATGGTTTTTGCATGCAAAATAAAATGGAAGC
61 TGAATTACATTAATACTTTGTATATTGTCCTCACATGGTCTTTGCACGCAAAATAAAATGGAAGC
24754106 AAATGTTGCTCATTGGTTGTCTAATGTT
126 AAATGTTGCTCATTGGTTGTCTAATGTT
24754134 GCTCTTCAGC
Statistics
Matches: 142, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
184 1 0.01
185 34 0.24
188 1 0.01
189 106 0.75
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.42
Consensus pattern (185 bp):
TGTAGTAATTTCATCTAAGTACACTTATAATTTTTTCGAATAGGTTAATAAAATTATTCATGAAT
TACATTAATACTTTGTATATTGTCCTCACATGGTCTTTGCACGCAAAATAAAATGGAAGCAAATG
TTGCTCATTGGTTGTCTAATGTTTAACTAATACTAAGCGGTATTATTACCTTAAG
Found at i:24759127 original size:17 final size:17
Alignment explanation
Indices: 24759105--24759140 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
24759095 TTCATTGAAA
*
24759105 TTCTTGAAATTTCAAAC
1 TTCTTGAAATTTAAAAC
24759122 TTCTTGAAATTTAAAAC
1 TTCTTGAAATTTAAAAC
24759139 TT
1 TT
24759141 GTACAAAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.36, C:0.14, G:0.06, T:0.44
Consensus pattern (17 bp):
TTCTTGAAATTTAAAAC
Found at i:24775750 original size:16 final size:16
Alignment explanation
Indices: 24775729--24775776 Score: 78
Period size: 16 Copynumber: 3.0 Consensus size: 16
24775719 TTTGGTTCGT
24775729 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
*
24775745 TGTAATGGAATAGATG
1 TGTAATGGAATAGAGG
*
24775761 CGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
24775777 CGCAATAGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.38, C:0.02, G:0.35, T:0.25
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:24775853 original size:44 final size:46
Alignment explanation
Indices: 24775764--24775854 Score: 125
Period size: 44 Copynumber: 2.0 Consensus size: 46
24775754 ATAGATGCGT
*
24775764 AATGGAATAGAGGCGCAATAGGTAATTCAATTGTTTGGTTGAATGG
1 AATGGAATAGAGGCGCAATAGATAATTCAATTGTTTGGTTGAATGG
* *
24775810 AATGGAATAGAGGCGTAAT-GAT-ATTC-TTATGTTTGGTTGAATGG
1 AATGGAATAGAGGCGCAATAGATAATTCAAT-TGTTTGGTTGAATGG
24775854 A
1 A
24775855 TTAGAGGTGT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
43 1 0.02
44 20 0.49
45 2 0.05
46 18 0.44
ACGTcount: A:0.32, C:0.05, G:0.30, T:0.33
Consensus pattern (46 bp):
AATGGAATAGAGGCGCAATAGATAATTCAATTGTTTGGTTGAATGG
Found at i:24779305 original size:24 final size:24
Alignment explanation
Indices: 24779275--24779324 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
24779265 CATGGGTTGC
*
24779275 TGTTTTTTTTTCTCTTTTCTGGGT
1 TGTTTTTTTTTCTCTTTTATGGGT
24779299 TGTTTTTTTTTCTCTTTTATGGGT
1 TGTTTTTTTTTCTCTTTTATGGGT
24779323 TG
1 TG
24779325 CTGTTTCTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.02, C:0.10, G:0.18, T:0.70
Consensus pattern (24 bp):
TGTTTTTTTTTCTCTTTTATGGGT
Found at i:24779689 original size:32 final size:33
Alignment explanation
Indices: 24779651--24779723 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
24779641 ACTTTTTTAT
* *
24779651 TACTATTTTCTTATT-TTTTTTAATTATTTTGT
1 TACTATTTTCTTATTGTCTTTTAATTATTTTGA
* * *
24779683 TCCTATTTTCTTGTTGTCTTTTCATTATTTTGA
1 TACTATTTTCTTATTGTCTTTTAATTATTTTGA
24779716 TACTATTT
1 TACTATTT
24779724 CACAATTATG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
32 13 0.38
33 21 0.62
ACGTcount: A:0.16, C:0.11, G:0.05, T:0.67
Consensus pattern (33 bp):
TACTATTTTCTTATTGTCTTTTAATTATTTTGA
Found at i:24783927 original size:19 final size:18
Alignment explanation
Indices: 24783884--24783927 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 18
24783874 ACACAAGTGC
*
24783884 AATAATTAAATACTATTA
1 AATAATAAAATACTATTA
24783902 AATTAATAAAATACTATTA
1 AA-TAATAAAATACTATTA
24783921 AGATAAT
1 A-ATAAT
24783928 TATTAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 2 0.09
19 20 0.87
20 1 0.04
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (18 bp):
AATAATAAAATACTATTA
Found at i:24787637 original size:29 final size:29
Alignment explanation
Indices: 24787603--24787668 Score: 123
Period size: 29 Copynumber: 2.3 Consensus size: 29
24787593 ATTTTTCAAG
24787603 AAAATTCTTTAATCAAATTCTCTAGTTGA
1 AAAATTCTTTAATCAAATTCTCTAGTTGA
24787632 AAAATTCTTTAATCAAATTCTCTAGTTGA
1 AAAATTCTTTAATCAAATTCTCTAGTTGA
*
24787661 ACAATTCT
1 AAAATTCT
24787669 CACAACCATC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.41
Consensus pattern (29 bp):
AAAATTCTTTAATCAAATTCTCTAGTTGA
Found at i:24790607 original size:21 final size:21
Alignment explanation
Indices: 24790583--24790624 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
24790573 AAGAAGGAGT
*
24790583 ACGACAAGCTAAGAGTATGCC
1 ACGACAAGATAAGAGTATGCC
24790604 ACGACAAGATAAGAGTATGCC
1 ACGACAAGATAAGAGTATGCC
24790625 TCAGAAGTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.21, G:0.24, T:0.14
Consensus pattern (21 bp):
ACGACAAGATAAGAGTATGCC
Found at i:24792584 original size:27 final size:28
Alignment explanation
Indices: 24792545--24792766 Score: 262
Period size: 27 Copynumber: 8.2 Consensus size: 28
24792535 AGAGGTAAAT
* *
24792545 AAATGATCGAAATACCCCT-ATAGAGTA
1 AAATGACCGAAATACCCCTCATAGGGTA
* **
24792572 CAATGACTAAAATACCCCT-ATAGGGTA
1 AAATGACCGAAATACCCCTCATAGGGTA
*
24792599 AAATGACTGAAATA-CCCTCATAGGGTA
1 AAATGACCGAAATACCCCTCATAGGGTA
24792626 AAATGACCGAAATA-CCCTCATAGGGTA
1 AAATGACCGAAATACCCCTCATAGGGTA
* * *
24792653 AAATGACCGAAATA-CCTTCATATGGTG
1 AAATGACCGAAATACCCCTCATAGGGTA
*
24792680 AAATGATCGAAATA-CCCTCATAGGGTA
1 AAATGACCGAAATACCCCTCATAGGGTA
* * *
24792707 AAATAATCGAAATACCCCT-ATAGGGTT
1 AAATGACCGAAATACCCCTCATAGGGTA
*
24792734 AAATGACCAAAATACCCCT-ATAGGGTA
1 AAATGACCGAAATACCCCTCATAGGGTA
24792761 AAATGA
1 AAATGA
24792767 ATGTTATACC
Statistics
Matches: 172, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 4 0.02
27 164 0.95
28 4 0.02
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (28 bp):
AAATGACCGAAATACCCCTCATAGGGTA
Found at i:24792658 original size:81 final size:81
Alignment explanation
Indices: 24792545--24792766 Score: 306
Period size: 81 Copynumber: 2.7 Consensus size: 81
24792535 AGAGGTAAAT
* * *
24792545 AAATGATCGAAATACCCCTATAGAGTACAATGACTAAAATACCCCTATAGGGTAAAATGA-CTGA
1 AAATGATCGAAATACCCCTATAGGGTAAAATGACCAAAATACCCCTATAGGGTAAAATGATC-GA
24792609 AATACCCTCATAGGGTA
65 AATACCCTCATAGGGTA
* * * * *
24792626 AAATGACCGAAATA-CCCTCATAGGGTAAAATGACCGAAATA-CCTTCATATGGTGAAATGATCG
1 AAATGATCGAAATACCCCT-ATAGGGTAAAATGACCAAAATACCCCT-ATAGGGTAAAATGATCG
24792689 AAATACCCTCATAGGGTA
64 AAATACCCTCATAGGGTA
* *
24792707 AAATAATCGAAATACCCCTATAGGGTTAAATGACCAAAATACCCCTATAGGGTAAAATGA
1 AAATGATCGAAATACCCCTATAGGGTAAAATGACCAAAATACCCCTATAGGGTAAAATGA
24792767 ATGTTATACC
Statistics
Matches: 121, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
80 7 0.06
81 106 0.88
82 8 0.07
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (81 bp):
AAATGATCGAAATACCCCTATAGGGTAAAATGACCAAAATACCCCTATAGGGTAAAATGATCGAA
ATACCCTCATAGGGTA
Found at i:24793155 original size:28 final size:28
Alignment explanation
Indices: 24793114--24793194 Score: 110
Period size: 27 Copynumber: 2.9 Consensus size: 28
24793104 ATTGCACTGT
* * *
24793114 ACTGATACTGTATTGGGCTAAGGCCCAA
1 ACTGTTACAGTATTGGGCTCAGGCCCAA
* *
24793142 ACTGTTACAGTATTGGGCTCA-GCCTAC
1 ACTGTTACAGTATTGGGCTCAGGCCCAA
24793169 ACTGTTACAGTATTGGGCTCAGGCCC
1 ACTGTTACAGTATTGGGCTCAGGCCC
24793195 TCACTATATT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 25 0.54
28 21 0.46
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (28 bp):
ACTGTTACAGTATTGGGCTCAGGCCCAA
Found at i:24795082 original size:27 final size:27
Alignment explanation
Indices: 24794990--24795082 Score: 89
Period size: 27 Copynumber: 3.4 Consensus size: 27
24794980 AAGGGATTTT
*
24794990 CCTTGAGAGTTCA-TCATACATACTATC
1 CCTTCAGAGTTCACT-ATACATACTATC
* * * * * * *
24795017 TCTTTAGTGTCCGCCACACATACTATC
1 CCTTCAGAGTTCACTATACATACTATC
*
24795044 CCTTCAGTGTTCACTATACATACTATC
1 CCTTCAGAGTTCACTATACATACTATC
24795071 CCTTCAGAGTTC
1 CCTTCAGAGTTC
24795083 GTCGGGAATA
Statistics
Matches: 51, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (27 bp):
CCTTCAGAGTTCACTATACATACTATC
Found at i:24795944 original size:23 final size:24
Alignment explanation
Indices: 24795906--24795950 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
24795896 AAAATCCTAC
*
24795906 CCATCCAGCCTCTACACACCATCT
1 CCATCCAGACTCTACACACCATCT
*
24795930 CCATCCA-ACTCTACACTCCAT
1 CCATCCAGACTCTACACACCAT
24795951 GTGGGGATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.27, C:0.49, G:0.02, T:0.22
Consensus pattern (24 bp):
CCATCCAGACTCTACACACCATCT
Found at i:24796543 original size:13 final size:13
Alignment explanation
Indices: 24796525--24796553 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
24796515 CTAGACTCAA
24796525 ATACCTTTCTACC
1 ATACCTTTCTACC
24796538 ATACCTTTCTACC
1 ATACCTTTCTACC
24796551 ATA
1 ATA
24796554 AAATTTTCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.34, G:0.00, T:0.38
Consensus pattern (13 bp):
ATACCTTTCTACC
Found at i:24801538 original size:13 final size:13
Alignment explanation
Indices: 24801520--24801544 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24801510 TTTTTGTGTT
24801520 TTTTTCTTTCATG
1 TTTTTCTTTCATG
24801533 TTTTTCTTTCAT
1 TTTTTCTTTCAT
24801545 AGAGAAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.16, G:0.04, T:0.72
Consensus pattern (13 bp):
TTTTTCTTTCATG
Found at i:24802961 original size:68 final size:69
Alignment explanation
Indices: 24802889--24803023 Score: 202
Period size: 69 Copynumber: 2.0 Consensus size: 69
24802879 TTTAATAGAT
* * *
24802889 TTAATATTAAATTTAATTTAATAATTATC-TTGAT-AGTATTTTATTAATTTAATATTAAAGTAA
1 TTAATATTAAATTTAATCTAATAATTATCGTT-ATAAGTATTATACTAATTTAATATTAAAGTAA
24802952 TTATC
65 TTATC
* *
24802957 TTAATATTAAATTTAATCTAATATTTATCGTTATAAGTATTATACTAATTTAATATTAAAGTGAT
1 TTAATATTAAATTTAATCTAATAATTATCGTTATAAGTATTATACTAATTTAATATTAAAGTAAT
24803022 TA
66 TA
24803024 AGTTTAATCA
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
68 29 0.48
69 31 0.52
ACGTcount: A:0.41, C:0.04, G:0.05, T:0.50
Consensus pattern (69 bp):
TTAATATTAAATTTAATCTAATAATTATCGTTATAAGTATTATACTAATTTAATATTAAAGTAAT
TATC
Found at i:24804695 original size:194 final size:194
Alignment explanation
Indices: 24804282--24804796 Score: 560
Period size: 194 Copynumber: 2.7 Consensus size: 194
24804272 GGTCTAACTT
* *
24804282 AGACGAGTAACCTAACATGTATATATTTAGCTTAGACAAGCAATCAGATGTATCGTTATAAAGGT
1 AGACGAGTAACCTAACATGTATATATTCAGCTTAGACAAGCAATCAGATGTGTCGTTATAAAGGT
*
24804347 TTAGCCT-AGACTGGTAACCTGACAC-AA-ATATATATTCAACTCAGATGAGCAATT-GTTGTAT
66 TTAGCCTGA-ACTGGTAACCTGACACAAATATATATATTCAACTCAGACGAGCAATTAG-TGTAT
* * ** *** **
24804408 TAAAGATACATGTGACACTTATTTAGCCAGGACTGGAAACCTGTTGTGGTTTTAAAGGTTTAGCC
129 CAAAGATACATGTGACACTAATTTAGCCAGGACTGGAAACCTAATGCCATTTTAAACCTTTAGCC
24804473 C
194 C
* * * * ** * * * * *
24804474 GGA-TAGGTAACTTGACATGTATATATTCAAATTAGACAAGTAATAAAATATGTTGTTATAAAGG
1 AGACGA-GTAACCTAACATGTATATATTCAGCTTAGACAAGCAATCAGATGTGTCGTTATAAAGG
* *
24804538 TTTAGCCTGAATTGGTAACCTGACACAAATATATATATTCAACTCGGACGAGCAATTAGTGTATC
65 TTTAGCCTGAACTGGTAACCTGACACAAATATATATATTCAACTCAGACGAGCAATTAGTGTATC
* * * *
24804603 AAAGATATATGT-A-ACTCAAGTTTAGCTTA-GACTTGTAACCTAATGCCATTTTAAACCTTTAG
130 AAAGATACATGTGACACT-AA-TTTAGC-CAGGACTGGAAACCTAATGCCATTTTAAACCTTTAG
*
24804665 TCC
192 CCC
* * *
24804668 AGACGAGTAACCTAACATGTATATATTCGGCTTAGACAAGCAATCAGATGTGTCATTATAAAAGT
1 AGACGAGTAACCTAACATGTATATATTCAGCTTAGACAAGCAATCAGATGTGTCGTTATAAAGGT
* * * * * * *
24804733 TAAGCTTGGACTGCTAACCTGACACAAATATATATATTCAGCTCAGACGAGAAATTATTGTATC
66 TTAGCCTGAACTGGTAACCTGACACAAATATATATATTCAACTCAGACGAGCAATTAGTGTATC
24804797 GGAGATGCCT
Statistics
Matches: 261, Mismatches: 53, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
191 1 0.00
192 75 0.29
193 5 0.02
194 177 0.68
195 3 0.01
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (194 bp):
AGACGAGTAACCTAACATGTATATATTCAGCTTAGACAAGCAATCAGATGTGTCGTTATAAAGGT
TTAGCCTGAACTGGTAACCTGACACAAATATATATATTCAACTCAGACGAGCAATTAGTGTATCA
AAGATACATGTGACACTAATTTAGCCAGGACTGGAAACCTAATGCCATTTTAAACCTTTAGCCC
Found at i:24808914 original size:23 final size:24
Alignment explanation
Indices: 24808887--24808937 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
24808877 GCAATTTAAG
*
24808887 AAGAAAGA-A-AATTTGCAATGGAA
1 AAGAAAGAGAGAATTTG-AATGAAA
24808910 AAGAAAGAGAGAATTTGAATGAAA
1 AAGAAAGAGAGAATTTGAATGAAA
24808934 AAGA
1 AAGA
24808938 GCTGAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 8 0.32
24 11 0.44
25 6 0.24
ACGTcount: A:0.59, C:0.02, G:0.24, T:0.16
Consensus pattern (24 bp):
AAGAAAGAGAGAATTTGAATGAAA
Found at i:24813396 original size:23 final size:23
Alignment explanation
Indices: 24813369--24813420 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
24813359 GCAATTTAAG
24813369 AAGAAAGA-A-AATTTGCAATGGAA
1 AAGAAAGAGAGAATTTG-AAT-GAA
24813392 AAGAAAGAGAGAATTTGAATGAA
1 AAGAAAGAGAGAATTTGAATGAA
24813415 AA-AAAG
1 AAGAAAG
24813421 CTGAATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 4 0.15
23 13 0.48
24 4 0.15
25 6 0.22
ACGTcount: A:0.60, C:0.02, G:0.23, T:0.15
Consensus pattern (23 bp):
AAGAAAGAGAGAATTTGAATGAA
Found at i:24813418 original size:25 final size:23
Alignment explanation
Indices: 24813369--24813417 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
24813359 GCAATTTAAG
*
24813369 AAGAAAGAAAATTTGCAATGGAA
1 AAGAAAGAAAATTTGCAATGAAA
24813392 AAGAAAGAGAGAATTTG-AATGAAA
1 AAGAAAGA-A-AATTTGCAATGAAA
24813416 AA
1 AA
24813418 AAGCTGAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 8 0.35
24 9 0.39
25 6 0.26
ACGTcount: A:0.59, C:0.02, G:0.22, T:0.16
Consensus pattern (23 bp):
AAGAAAGAAAATTTGCAATGAAA
Found at i:24827114 original size:22 final size:22
Alignment explanation
Indices: 24827086--24827158 Score: 87
Period size: 21 Copynumber: 3.4 Consensus size: 22
24827076 CAAGACAACA
*
24827086 GTTTCTCCCTTCCTTCTTGCTG
1 GTTTCTCCCTTCGTTCTTGCTG
*
24827108 GTTTCTCCCTT-GTTCTTACTG
1 GTTTCTCCCTTCGTTCTTGCTG
* * *
24827129 GTTTGT-CCATCGTTTTTGCTG
1 GTTTCTCCCTTCGTTCTTGCTG
24827150 GTTTCTCCC
1 GTTTCTCCC
24827159 CTCTCTTTTG
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
20 3 0.07
21 26 0.62
22 13 0.31
ACGTcount: A:0.03, C:0.30, G:0.16, T:0.51
Consensus pattern (22 bp):
GTTTCTCCCTTCGTTCTTGCTG
Found at i:24827170 original size:22 final size:22
Alignment explanation
Indices: 24827086--24827170 Score: 72
Period size: 21 Copynumber: 4.0 Consensus size: 22
24827076 CAAGACAACA
24827086 GTTTCTCCCT-TCCTTCTTGCTG
1 GTTTCTCCCTCT-CTTCTTGCTG
* *
24827108 GTTTCTCCCT-TGTTCTTACTG
1 GTTTCTCCCTCTCTTCTTGCTG
* *
24827129 GTTTGTCCATCGT-TT-TTGCTG
1 GTTTCTCCCTC-TCTTCTTGCTG
24827150 GTTTCTCCCCTCTCTT-TTGCT
1 GTTTCT-CCCTCTCTTCTTGCT
24827171 TTGTTCTTGG
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
21 27 0.52
22 24 0.46
23 1 0.02
ACGTcount: A:0.02, C:0.31, G:0.15, T:0.52
Consensus pattern (22 bp):
GTTTCTCCCTCTCTTCTTGCTG
Found at i:24829564 original size:29 final size:29
Alignment explanation
Indices: 24829508--24829953 Score: 698
Period size: 29 Copynumber: 15.2 Consensus size: 29
24829498 CATTGTATTT
*
24829508 GTGTATTTTAAAAATAAAAAAAAATATGTA
1 GTGTATTTTAAAAAT-AAAAAATATATGTA
* *
24829538 ATGTATTTTAAAAATAAAGAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
24829567 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAAT-AAAAAATATATGTA
*
24829597 GTGTATTTTAAAAAT-AAAAATATATGTG
1 GTGTATTTTAAAAATAAAAAATATATGTA
24829625 GTGTATTTTAAAAATAAAAAATATATATGTA
1 GTGTATTTTAAAAAT-AAAAA-ATATATGTA
24829656 GTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
24829685 GTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
* **
24829714 GT-TTTTTTTTAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAAT-AAAAAATATATGTA
*
24829743 GTGTATTTTAAAAATAAAGAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
*
24829772 GTGTATTTTAAAAATAAAAAGTATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
*
24829801 GTGTATTTTAAAAATAAAAAAGATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
24829830 GTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
* * *
24829859 GTGCATTTTAAGAATAAAAAATATATGTT
1 GTGTATTTTAAAAATAAAAAATATATGTA
*
24829888 GTATATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
24829917 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAAT-AAAAAATATATGTA
24829947 GTGTATT
1 GTGTATT
24829954 CGGTTTATTC
Statistics
Matches: 382, Mismatches: 27, Indels: 14
0.90 0.06 0.03
Matches are distributed among these distances:
28 36 0.09
29 242 0.63
30 81 0.21
31 23 0.06
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.38
Consensus pattern (29 bp):
GTGTATTTTAAAAATAAAAAATATATGTA
Found at i:24830289 original size:39 final size:39
Alignment explanation
Indices: 24830246--24830326 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
24830236 ACTAAAGTGA
24830246 AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
1 AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
*
24830285 AAAGAAAATAATAGTTCAAGTAAAGCTTTAAAGATGAAC
1 AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
24830324 AAA
1 AAA
24830327 TCGATTGCAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.56, C:0.09, G:0.15, T:0.21
Consensus pattern (39 bp):
AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
Found at i:24833922 original size:21 final size:21
Alignment explanation
Indices: 24833896--24833948 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
24833886 TATTGTTTCT
*
24833896 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
24833917 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
24833938 AATCTCACCGC
1 AATCTCACCGC
24833949 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.38, G:0.09, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:24836084 original size:24 final size:24
Alignment explanation
Indices: 24836052--24836500 Score: 308
Period size: 25 Copynumber: 18.6 Consensus size: 24
24836042 GATTATTCAG
* *
24836052 CAAATTGGACAGCAAT-AATATGCT
1 CAAAATGGACAGC-ATCAATATACT
24836076 CAAAATGGACAGCAT---TATACAT
1 CAAAATGGACAGCATCAATATAC-T
* * * *
24836098 CAAATTAGACAGCTTAAATATACT
1 CAAAATGGACAGCATCAATATACT
24836122 CAAAATTGGACAGCAT---TATACAT
1 CAAAA-TGGACAGCATCAATATAC-T
*
24836145 TAAAATGGACAGCATCAATATACT
1 CAAAATGGACAGCATCAATATACT
*
24836169 CAAAATGGACAGCATCAATACACT
1 CAAAATGGACAGCATCAATATACT
*
24836193 CAAAATTGGACAG--T-ATTATACAT
1 CAAAA-TGGACAGCATCAATATAC-T
* *
24836216 TAAAATGGGCAGCATCAATATACT
1 CAAAATGGACAGCATCAATATACT
* * * *
24836240 TAAAATCGGACAGCAT-TATACATT
1 CAAAAT-GGACAGCATCAATATACT
* *
24836264 AAAAATGGACAGCATCAATACACT
1 CAAAATGGACAGCATCAATATACT
*
24836288 CAAAATTTGACAGCAT---TATACAT
1 CAAAA-TGGACAGCATCAATATAC-T
* *
24836311 TAAAATGGGCAGCATCAATATACT
1 CAAAATGGACAGCATCAATATACT
* * *
24836335 TAAAATTGGATAGCATCAATACACT
1 CAAAA-TGGACAGCATCAATATACT
24836360 CAAAATTGGACAGCAT---TATACAT
1 CAAAA-TGGACAGCATCAATATAC-T
* *
24836383 TAAAATGGACAGCATCAATACACT
1 CAAAATGGACAGCATCAATATACT
* *
24836407 CAAAATTGGACAGCATTATACATTAAAACACT
1 CAAAA-TGGACAGC---AT-C---AATATACT
24836439 CAAAATTGGACAGCAT---TATACAT
1 CAAAA-TGGACAGCATCAATATAC-T
*
24836462 TAAAATGGACAGCATCAATATACT
1 CAAAATGGACAGCATCAATATACT
24836486 CAAAATGGACAGCAT
1 CAAAATGGACAGCAT
24836501 TATACATCAA
Statistics
Matches: 344, Mismatches: 43, Indels: 76
0.74 0.09 0.16
Matches are distributed among these distances:
21 4 0.01
22 78 0.23
23 37 0.11
24 99 0.29
25 100 0.29
28 2 0.01
29 3 0.01
32 21 0.06
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.25
Consensus pattern (24 bp):
CAAAATGGACAGCATCAATATACT
Found at i:24836276 original size:95 final size:95
Alignment explanation
Indices: 24836138--24836507 Score: 392
Period size: 95 Copynumber: 3.8 Consensus size: 95
24836128 TGGACAGCAT
* * *
24836138 TATACATTAAAA-TGGACAGCATCAATATACTCAAAATGGACAGCATCAATACACTCAAAATTGG
1 TATAC-TTAAAATTGGACAGCATCAATACATTAAAAATGGACAGCATCAATACACTCAAAA-TGG
*
24836202 ACAGTATTATACATTAAAATGGGCAGCATCAA
64 ACAGCATTATACATTAAAATGGGCAGCATCAA
* * *
24836234 TATACTTAAAATCGGACAGCAT-TATACATTAAAAATGGACAGCATCAATACACTCAAAATTTGA
1 TATACTTAAAATTGGACAGCATCAATACATTAAAAATGGACAGCATCAATACACTCAAAA-TGGA
24836298 CAGCATTATACATTAAAATGGGCAGCATCAA
65 CAGCATTATACATTAAAATGGGCAGCATCAA
* * * * *
24836329 TATACTTAAAATTGGATAGCATCAATACACTCAAAATTGGACAGCAT-TATACA-TTAAAATGGA
1 TATACTTAAAATTGGACAGCATCAATACA-TTAAAAATGGACAGCATCAATACACTCAAAATGGA
* * *
24836392 CAGCATCAATACACTCAAAATTGGACAGCATTATACATTAA
65 CAGCAT-TATACA-TTAAAA-TGGGCAGC---AT-C---AA
* * * * *
24836433 AACACTCAAAATTGGACAGCAT-TATACATT-AAAATGGACAGCATCAATATACTCAAAATGGAC
1 TATACTTAAAATTGGACAGCATCAATACATTAAAAATGGACAGCATCAATACACTCAAAATGGAC
24836496 AGCATTATACAT
66 AGCATTATACAT
24836508 CAAATTATAA
Statistics
Matches: 230, Mismatches: 29, Indels: 25
0.81 0.10 0.09
Matches are distributed among these distances:
94 9 0.04
95 103 0.45
96 29 0.13
97 22 0.10
100 2 0.01
101 15 0.07
102 10 0.04
103 20 0.09
104 20 0.09
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.25
Consensus pattern (95 bp):
TATACTTAAAATTGGACAGCATCAATACATTAAAAATGGACAGCATCAATACACTCAAAATGGAC
AGCATTATACATTAAAATGGGCAGCATCAA
Found at i:24836430 original size:47 final size:46
Alignment explanation
Indices: 24836057--24836434 Score: 308
Period size: 47 Copynumber: 8.0 Consensus size: 46
24836047 TTCAGCAAAT
** * *
24836057 TGGACAGCAATAATATGCTCAAAATGGACAGCAT-TATACATCAAAT
1 TGGACAGC-ATAATACACTCAAAATGGACAGCATATATACATTAAAA
* * *
24836103 TAGACAGCTTAAATATACTCAAAATTGGACAGCAT-TATACATTAAAA
1 TGGACAGCAT-AATACACTCAAAA-TGGACAGCATATATACATTAAAA
* *
24836150 TGGACAGCATCAATATACTCAAAATGGACAGCATCA-ATACACTCAAAA
1 TGGACAGCAT-AATACACTCAAAATGGACAGCAT-ATATACA-TTAAAA
* * * *
24836198 TTGGACAGTATTATACA-TTAAAATGGGCAGCATCAATATAC-TTAAAA
1 -TGGACAGCATAATACACTCAAAATGGACAGCAT--ATATACATTAAAA
* * * *
24836245 TCGGACAGCATTATACATTAAAAATGGACAGCATCA-ATACACTCAAAA
1 T-GGACAGCATAATACACTCAAAATGGACAGCAT-ATATACA-TTAAAA
* * * *
24836293 TTTGACAGCATTATACA-TTAAAATGGGCAGCATCAATATAC-TTAAAA
1 -TGGACAGCATAATACACTCAAAATGGACAGCAT--ATATACATTAAAA
*
24836340 TTGGATAGCATCAATACACTCAAAATTGGACAGCAT-TATACATTAAAA
1 -TGGACAGCAT-AATACACTCAAAA-TGGACAGCATATATACATTAAAA
24836388 TGGACAGCATCAATACACTCAAAATTGGACAGCAT-TATACATTAAAA
1 TGGACAGCAT-AATACACTCAAAA-TGGACAGCATATATACATTAAAA
24836435 CACTCAAAAT
Statistics
Matches: 281, Mismatches: 32, Indels: 37
0.80 0.09 0.11
Matches are distributed among these distances:
45 1 0.00
46 34 0.12
47 159 0.57
48 55 0.20
49 23 0.08
50 9 0.03
ACGTcount: A:0.44, C:0.17, G:0.13, T:0.25
Consensus pattern (46 bp):
TGGACAGCATAATACACTCAAAATGGACAGCATATATACATTAAAA
Found at i:24836443 original size:32 final size:32
Alignment explanation
Indices: 24836402--24836466 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
24836392 CAGCATCAAT
24836402 ACACTCAAAATTGGACAGCATTATACATTAAA
1 ACACTCAAAATTGGACAGCATTATACATTAAA
24836434 ACACTCAAAATTGGACAGCATTATACATTAAA
1 ACACTCAAAATTGGACAGCATTATACATTAAA
24836466 A
1 A
24836467 TGGACAGCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.48, C:0.18, G:0.09, T:0.25
Consensus pattern (32 bp):
ACACTCAAAATTGGACAGCATTATACATTAAA
Found at i:24836456 original size:79 final size:78
Alignment explanation
Indices: 24836283--24836507 Score: 320
Period size: 72 Copynumber: 2.9 Consensus size: 78
24836273 CAGCATCAAT
* * * * *
24836283 ACACTCAAAATTTGACAGCATTATACATTAAAATGGGCAGCATCAATATACTTAAAATTGGATAG
1 ACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATCAATACACTCAAAA-TGGACAG
*
24836348 C---AT-C---AAT
65 CATTATACATTAAA
24836355 ACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATCAATACACTCAAAATTGGACAG
1 ACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATCAATACACTCAAAA-TGGACAG
24836420 CATTATACATTAAA
65 CATTATACATTAAA
*
24836434 ACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATCAATATACTCAAAATGGACAGC
1 ACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATCAATACACTCAAAATGGACAGC
24836499 ATTATACAT
66 ATTATACAT
24836508 CAAATTATAA
Statistics
Matches: 139, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
72 61 0.44
75 2 0.01
76 1 0.01
78 17 0.12
79 58 0.42
ACGTcount: A:0.44, C:0.18, G:0.12, T:0.25
Consensus pattern (78 bp):
ACACTCAAAATTGGACAGCATTATACATTAAAATGGACAGCATCAATACACTCAAAATGGACAGC
ATTATACATTAAA
Found at i:24836471 original size:22 final size:22
Alignment explanation
Indices: 24836438--24836511 Score: 96
Period size: 22 Copynumber: 3.2 Consensus size: 22
24836428 ATTAAAACAC
24836438 TCAAAATTGGACAGCATTATACA
1 TCAAAA-TGGACAGCATTATACA
*
24836461 TTAAAATGGACAGCATCAATATAC-
1 TCAAAATGGACAGCAT---TATACA
24836485 TCAAAATGGACAGCATTATACA
1 TCAAAATGGACAGCATTATACA
24836507 TCAAA
1 TCAAA
24836512 TTATAACACA
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
21 5 0.11
22 15 0.33
23 5 0.11
24 15 0.33
25 5 0.11
ACGTcount: A:0.46, C:0.18, G:0.12, T:0.24
Consensus pattern (22 bp):
TCAAAATGGACAGCATTATACA
Found at i:24837491 original size:30 final size:27
Alignment explanation
Indices: 24837453--24837525 Score: 85
Period size: 30 Copynumber: 2.6 Consensus size: 27
24837443 TTAATAAGTA
24837453 CGCACACTTAGTGCTTAAT-AATCAAACT
1 CGCACACTTAGTGCTT--TCAATCAAACT
*
24837481 CGCACACACTTAGTGCATTTCAATTAAACT
1 CG--CACACTTAGTGC-TTTCAATCAAACT
24837511 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24837526 AATCTCATTA
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
27 1 0.03
28 14 0.35
29 1 0.03
30 22 0.55
31 2 0.05
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTTTCAATCAAACT
Found at i:24840056 original size:11 final size:11
Alignment explanation
Indices: 24840026--24840059 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
24840016 GTCCTCAAGC
*
24840026 AAACAAAACAA
1 AAACAAAAGAA
*
24840037 AAACAAAAGTA
1 AAACAAAAGAA
24840048 AAACAAAAGAA
1 AAACAAAAGAA
24840059 A
1 A
24840060 CTAGAAAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.79, C:0.12, G:0.06, T:0.03
Consensus pattern (11 bp):
AAACAAAAGAA
Found at i:24855474 original size:22 final size:22
Alignment explanation
Indices: 24855449--24855494 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
24855439 GTTATAAACC
*
24855449 ATAATCAGGATGGCACAGAGCT
1 ATAATCAGGATGGCACAAAGCT
*
24855471 ATAATCGGGATGGCACAAAGCT
1 ATAATCAGGATGGCACAAAGCT
24855493 AT
1 AT
24855495 CAGTAACTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.20
Consensus pattern (22 bp):
ATAATCAGGATGGCACAAAGCT
Found at i:24864198 original size:50 final size:50
Alignment explanation
Indices: 24864087--24864335 Score: 336
Period size: 50 Copynumber: 4.8 Consensus size: 50
24864077 ATTTGGGTAA
*
24864087 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAG---ATG
*
24864143 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * *
24864193 AGAGGTCCCATATAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * *
24864243 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** *
24864293 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
24864336 TGTTATGATC
Statistics
Matches: 177, Mismatches: 15, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
50 97 0.55
51 35 0.20
53 3 0.02
55 2 0.01
56 40 0.23
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:24867727 original size:138 final size:138
Alignment explanation
Indices: 24867479--24867734 Score: 352
Period size: 138 Copynumber: 1.9 Consensus size: 138
24867469 AACCATAAAA
* * *
24867479 TGGGTCTGCTCACACAAGCTGACGATTGGAATGTAAACTATATGATGCTACTCACACAAGCTAAT
1 TGGGTCTGCTCACACAAGCTGACGATTAGAATGTAAACTACAAGATGCTACTCACACAAGCTAAT
* **
24867544 GAGTATCCATAACAAATGTTGGAACTCAGCCACCAGTAAGACATTCAGGACCAACAATCGAAACA
66 GAGTATCCATAAAAAATGTCAGAACTCAGCCACCAGTAAGACATTCAGGACCAACAATCGAAACA
24867609 TAGTAACC
131 TAGTAACC
* * * * *
24867617 TGGGTCTGCTCACACAAGCTGATGGTTAGAATGTAAGCTACAAGATGCTGCTCACACAAGCTGAT
1 TGGGTCTGCTCACACAAGCTGACGATTAGAATGTAAACTACAAGATGCTACTCACACAAGCTAAT
* * * * *
24867682 GAGTATTCGTAAAAAATGTCAGACCTCAGCCATCGGT-AGAACATTCAGGACCA
66 GAGTATCCATAAAAAATGTCAGAACTCAGCCACCAGTAAG-ACATTCAGGACCA
24867735 GCACCCGAAA
Statistics
Matches: 101, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
137 2 0.02
138 99 0.98
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (138 bp):
TGGGTCTGCTCACACAAGCTGACGATTAGAATGTAAACTACAAGATGCTACTCACACAAGCTAAT
GAGTATCCATAAAAAATGTCAGAACTCAGCCACCAGTAAGACATTCAGGACCAACAATCGAAACA
TAGTAACC
Found at i:24871428 original size:10 final size:10
Alignment explanation
Indices: 24871415--24871451 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
24871405 AAAATTAGCT
24871415 TAATTAACTA
1 TAATTAACTA
24871425 TAATTAACTA
1 TAATTAACTA
* *
24871435 AAATTAATTA
1 TAATTAACTA
24871445 TAATTAA
1 TAATTAA
24871452 AAAATTTAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (10 bp):
TAATTAACTA
Found at i:24872404 original size:16 final size:16
Alignment explanation
Indices: 24872383--24872417 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
24872373 GGTTGGAGGG
*
24872383 AATGGAATAGGGTTGT
1 AATGGAATAGAGTTGT
24872399 AATGGAATAGAGTTGT
1 AATGGAATAGAGTTGT
24872415 AAT
1 AAT
24872418 CAGTAATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.37, C:0.00, G:0.31, T:0.31
Consensus pattern (16 bp):
AATGGAATAGAGTTGT
Found at i:24872663 original size:56 final size:56
Alignment explanation
Indices: 24872596--24872740 Score: 186
Period size: 56 Copynumber: 2.5 Consensus size: 56
24872586 TTATAATAGG
24872596 ATTATTATTAAATATAATTTAATAAATAATATATAATTTAAT-CATACTTTAATATA
1 ATTATTATTAAATATAATTTAATAAATAATATATAATTTAATACATAC-TTAATATA
*
24872652 ATTATTATTAAATATAATTTAATAAAGATAATAATATATAATTTAATAACATTCTTAATATA
1 ATTATTATTAAATATAATTTAAT----A-AATAATATATAATTTAAT-ACATACTTAATATA
24872714 ATTATTATTAAAATATGAA-TTAATAAA
1 ATTATTATT-AAATAT-AATTTAATAAA
24872741 AATCATAATA
Statistics
Matches: 79, Mismatches: 1, Indels: 16
0.82 0.01 0.17
Matches are distributed among these distances:
56 23 0.29
58 2 0.03
59 1 0.01
60 1 0.01
61 18 0.23
62 17 0.22
63 15 0.19
64 2 0.03
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (56 bp):
ATTATTATTAAATATAATTTAATAAATAATATATAATTTAATACATACTTAATATA
Found at i:24872665 original size:16 final size:17
Alignment explanation
Indices: 24872599--24872670 Score: 56
Period size: 19 Copynumber: 3.9 Consensus size: 17
24872589 TAATAGGATT
24872599 ATTATTAAATATAATTTA
1 ATTATTAAATATAA-TTA
* *
24872617 ATAAATAATATATAATTTA
1 ATTATTAA-ATATAA-TTA
*
24872636 ATCATACTTTAATATAATT-
1 AT--TA-TTAAATATAATTA
24872655 ATTATTAAATATAATT
1 ATTATTAAATATAATT
24872671 TAATAAAGAT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
16 11 0.25
17 2 0.05
18 6 0.14
19 14 0.32
20 2 0.05
21 7 0.16
22 2 0.05
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTATTAAATATAATTA
Found at i:24872749 original size:63 final size:61
Alignment explanation
Indices: 24872596--24872756 Score: 210
Period size: 63 Copynumber: 2.7 Consensus size: 61
24872586 TTATAATAGG
24872596 ATTATTATTAAATATAATTTAAT----A-AATAATATATAATTTAATCATACTTTAATATA
1 ATTATTATTAAATATAATTTAATAAAAATAATAATATATAATTTAATCATACTTTAATATA
* *
24872652 ATTATTATTAAATATAATTTAATAAAGATAATAATATATAATTTAATAACATTC-TTAATATA
1 ATTATTATTAAATATAATTTAATAAAAATAATAATATATAATTTAAT--CATACTTTAATATA
*
24872714 ATTATTATTAAAATATGAA-TTAATAAAAATCATAATATATAAT
1 ATTATTATT-AAATAT-AATTTAATAAAAATAATAATATATAAT
24872757 ATTAGAAAAA
Statistics
Matches: 93, Mismatches: 3, Indels: 11
0.87 0.03 0.10
Matches are distributed among these distances:
56 23 0.25
60 1 0.01
61 18 0.19
62 17 0.18
63 32 0.34
64 2 0.02
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.43
Consensus pattern (61 bp):
ATTATTATTAAATATAATTTAATAAAAATAATAATATATAATTTAATCATACTTTAATATA
Found at i:24872870 original size:15 final size:16
Alignment explanation
Indices: 24872850--24872884 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
24872840 TAATTTAATT
24872850 ATCTT-CTATAAATGA
1 ATCTTCCTATAAATGA
*
24872865 ATCTTCCTATAAATTA
1 ATCTTCCTATAAATGA
24872881 ATCT
1 ATCT
24872885 CAATTTTGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.37, C:0.17, G:0.03, T:0.43
Consensus pattern (16 bp):
ATCTTCCTATAAATGA
Found at i:24873064 original size:19 final size:18
Alignment explanation
Indices: 24873037--24873079 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
24873027 TGTTATAATC
24873037 TAAAAATGATAAATTTTAT
1 TAAAAATGA-AAATTTTAT
* *
24873056 TAAACATGAAATTTTTAT
1 TAAAAATGAAAATTTTAT
24873074 TAAAAA
1 TAAAAA
24873080 AAGAAGAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (18 bp):
TAAAAATGAAAATTTTAT
Found at i:24880624 original size:2 final size:2
Alignment explanation
Indices: 24880617--24880641 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
24880607 TATTTTAAGT
24880617 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
24880642 TATTTTACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24880984 original size:8 final size:8
Alignment explanation
Indices: 24880971--24881004 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
24880961 TGGTGGTCGA
*
24880971 TTTATTTT
1 TTTATTTG
24880979 TTTATTTG
1 TTTATTTG
*
24880987 TTTGTTTG
1 TTTATTTG
24880995 TTTATTTG
1 TTTATTTG
24881003 TT
1 TT
24881005 CAATTATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.09, C:0.00, G:0.12, T:0.79
Consensus pattern (8 bp):
TTTATTTG
Found at i:24881719 original size:21 final size:22
Alignment explanation
Indices: 24881695--24881737 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
24881685 CGTGAACCAG
* *
24881695 AATCATTTTTTAATAA-AATCA
1 AATCATTTATTAAAAACAATCA
*
24881716 AATCGTTTATTAAAAACAATCA
1 AATCATTTATTAAAAACAATCA
24881738 TTTTACGAGG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.49, C:0.12, G:0.02, T:0.37
Consensus pattern (22 bp):
AATCATTTATTAAAAACAATCA
Found at i:24886920 original size:31 final size:31
Alignment explanation
Indices: 24886854--24886924 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
24886844 AATAATCCAG
* **
24886854 TGACTTAAATAAAAACTTTTAAATAGCTCGG
1 TGACTTAAATAAAAACTTTCAAATAGCTCAA
* *
24886885 TGACTTAAATGAAAACTTTCAAATAGTTCAA
1 TGACTTAAATAAAAACTTTCAAATAGCTCAA
24886916 TGAC-TAAAT
1 TGACTTAAAT
24886925 TATAATTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
30 5 0.14
31 30 0.86
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.32
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTCAAATAGCTCAA
Found at i:24891661 original size:16 final size:16
Alignment explanation
Indices: 24891636--24891668 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
24891626 TGGTCTTTGC
24891636 TTCTTCTTTACTTACT
1 TTCTTCTTTACTTACT
*
24891652 TTCTTGTTTACTTACT
1 TTCTTCTTTACTTACT
24891668 T
1 T
24891669 GCTTACTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.21, G:0.03, T:0.64
Consensus pattern (16 bp):
TTCTTCTTTACTTACT
Found at i:24892003 original size:50 final size:50
Alignment explanation
Indices: 24891881--24892073 Score: 183
Period size: 50 Copynumber: 3.9 Consensus size: 50
24891871 TAATAACATG
* ** * * *
24891881 CCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGTAC--TA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGGTA
* * * ** *
24891930 CCAATGCCATATCCCAAATATGGTCTTACATGGGAGTTCTCATATCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTA
* ** * *
24891980 CCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTA
* * *
24892030 CCAACGCTATGTCCCAGACATGGTCTTACGTGGGACCTCTCATA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
24892074 ATCTCAATAA
Statistics
Matches: 116, Mismatches: 26, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
48 1 0.01
49 36 0.31
50 79 0.68
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTA
Found at i:24893955 original size:30 final size:30
Alignment explanation
Indices: 24893908--24893995 Score: 160
Period size: 30 Copynumber: 3.0 Consensus size: 30
24893898 GGTAGGCTTG
*
24893908 CACTCT-GCTTTCTGTCTTCAACAGGCTCA
1 CACTCTAGCTTACTGTCTTCAACAGGCTCA
24893937 CACTCTAGCTTACTGTCTTCAACAGGCTCA
1 CACTCTAGCTTACTGTCTTCAACAGGCTCA
24893967 CACTCTAGCTTACTGTCTTCAACAGGCTC
1 CACTCTAGCTTACTGTCTTCAACAGGCTC
24893996 GCACCTTTAC
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
29 6 0.11
30 51 0.89
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (30 bp):
CACTCTAGCTTACTGTCTTCAACAGGCTCA
Found at i:24895317 original size:46 final size:47
Alignment explanation
Indices: 24895266--24895367 Score: 152
Period size: 46 Copynumber: 2.2 Consensus size: 47
24895256 CTTTGCTTAT
* **
24895266 TGTCTTCAACAGGCTCACAACTTTGGCAGGCTCACACTCTA-CTTTC
1 TGTCTTCAACAGGCTCACAACTTTGACAGGCTCACACTCTAGCTAAC
* *
24895312 TGTCTTCAACAGGCTCACAACTTTGACAGGCTCGCACTTTAGCTAAC
1 TGTCTTCAACAGGCTCACAACTTTGACAGGCTCACACTCTAGCTAAC
24895359 TGTCTTCAA
1 TGTCTTCAA
24895368 TAAGCTCGCA
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
46 38 0.76
47 12 0.24
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.30
Consensus pattern (47 bp):
TGTCTTCAACAGGCTCACAACTTTGACAGGCTCACACTCTAGCTAAC
Found at i:24900894 original size:21 final size:21
Alignment explanation
Indices: 24900870--24900912 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
24900860 TTATTCACAA
**
24900870 CTTCAACACGAACGTCCTCCT
1 CTTCAACAAAAACGTCCTCCT
* *
24900891 CTTCCACAAAAACTTCCTCCT
1 CTTCAACAAAAACGTCCTCCT
24900912 C
1 C
24900913 AACAGCAGAC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.44, G:0.05, T:0.26
Consensus pattern (21 bp):
CTTCAACAAAAACGTCCTCCT
Found at i:24913709 original size:44 final size:43
Alignment explanation
Indices: 24913661--24913756 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 43
24913651 CACTGAAGTA
* * * *
24913661 CATCATCATATAAAATCGAAGTAGGTAAATTGTCACACACAGTG
1 CATCATCA-AGAAAATCAAAGTAGGGAAATTGACACACACAGTG
* * *
24913705 CATCATCAGGCAAATCAAAGTAGGGAAATTGACACACATAGTG
1 CATCATCAAGAAAATCAAAGTAGGGAAATTGACACACACAGTG
24913748 CATCATCAA
1 CATCATCAA
24913757 ACAAACGGAA
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 36 0.82
44 8 0.18
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.22
Consensus pattern (43 bp):
CATCATCAAGAAAATCAAAGTAGGGAAATTGACACACACAGTG
Found at i:24913769 original size:43 final size:43
Alignment explanation
Indices: 24913673--24913775 Score: 136
Period size: 43 Copynumber: 2.4 Consensus size: 43
24913663 TCATCATATA
* * **
24913673 AAATCGAAGTAGGTAAATTGTCACACACAGTGCATCATCAGGC
1 AAATCGAAGTAGGGAAATTGACACACACAGTGCATCATCAAAC
* *
24913716 AAATCAAAGTAGGGAAATTGACACACATAGTGCATCATCAAAC
1 AAATCGAAGTAGGGAAATTGACACACACAGTGCATCATCAAAC
24913759 AAA-CGGAAGTAGGGAAA
1 AAATC-GAAGTAGGGAAA
24913776 CTGGTACATG
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
42 1 0.02
43 51 0.98
ACGTcount: A:0.44, C:0.17, G:0.21, T:0.17
Consensus pattern (43 bp):
AAATCGAAGTAGGGAAATTGACACACACAGTGCATCATCAAAC
Found at i:24919527 original size:23 final size:24
Alignment explanation
Indices: 24919489--24919584 Score: 72
Period size: 24 Copynumber: 4.0 Consensus size: 24
24919479 ACAAAAAATG
*
24919489 TAAAAAA-TATAAAAAAATTTATTT
1 TAAAAAATTATAAAAATA-TTATTT
*
24919513 TAAAAAAGTT-TAAAAATATTTTTT
1 TAAAAAA-TTATAAAAATATTATTT
* * *
24919537 TATAAAATTATAAAATTATAATTT
1 TAAAAAATTATAAAAATATTATTT
* ** *
24919561 TATAATTTTATAAAAA-AATATTT
1 TAAAAAATTATAAAAATATTATTT
24919584 T
1 T
24919585 TAAACTTTTT
Statistics
Matches: 58, Mismatches: 11, Indels: 7
0.76 0.14 0.09
Matches are distributed among these distances:
23 8 0.14
24 42 0.72
25 7 0.12
26 1 0.02
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (24 bp):
TAAAAAATTATAAAAATATTATTT
Found at i:24919585 original size:24 final size:24
Alignment explanation
Indices: 24919523--24919604 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 24
24919513 TAAAAAAGTT
* * **
24919523 TAAAAATATTTTTTTATAAAATTA
1 TAAAAAAATATTTTTATAATTTTA
** *
24919547 TAAAATTATAATTTTATAATTTTA
1 TAAAAAAATATTTTTATAATTTTA
*
24919571 TAAAAAAATATTTTTA-AACTTTTT
1 TAAAAAAATATTTTTATAA-TTTTA
24919595 TAAAAAAATA
1 TAAAAAAATA
24919605 AAAAAAATTA
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
23 2 0.04
24 46 0.96
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (24 bp):
TAAAAAAATATTTTTATAATTTTA
Found at i:24924776 original size:44 final size:44
Alignment explanation
Indices: 24924721--24924808 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
24924711 AACATGATCA
24924721 TCACAAGTGAATACATCCATAAACAGATTCAGGATCTTGTAACG
1 TCACAAGTGAATACATCCATAAACAGATTCAGGATCTTGTAACG
* ** *
24924765 TCACGAGTGAATACATCCATAAATGGATTTAGGATCTTGTAACG
1 TCACAAGTGAATACATCCATAAACAGATTCAGGATCTTGTAACG
24924809 CCCTGATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (44 bp):
TCACAAGTGAATACATCCATAAACAGATTCAGGATCTTGTAACG
Found at i:24928106 original size:290 final size:291
Alignment explanation
Indices: 24927590--24928327 Score: 747
Period size: 290 Copynumber: 2.5 Consensus size: 291
24927580 CAATTCTGCG
* * * *
24927590 GAGAGCCCCGA-GGTT-ATGGAGTGGGAGAGCCTCAGTTGGTGGAGAGAGTACGTACCTGATGGA
1 GAGAGCCCCGAGGGTTCA-CGAGTGGGAGTGCCTCGGTTGGTGGAGAGAGTACGTACCTGAAGGA
* * * *
24927653 TGCGTAAATAATTAATCAATGAAGCCGCACACGATGCGGATTGAACCACCAACCGAGGCATAACT
65 TGTGTAGATAATTAATCAATGAAGTCGCACACGATGCGGATTGAACCACCAACCAAGGCATAACT
* * * * * *
24927718 AGCCTTTTTAATGAGACATGGTACCACTTGAGTCTTTTTATTGTTGAAGGGGGTCATCTTCTTCG
130 AGCCTTTTCAAGGAGAAATGGTACCACTTGAGCCTTTTTATTGTGGAAGGGGGTCATCTCCTTCG
** * * * **
24927783 GGAGAAGTCTCTTAAGTGTCATTCATTGAGCGGT-TA-ATA-CCACCTTCAACAATTGTAAGTAT
195 GGAGAAGTCTCCGAAGGGTCATTCA-CGAGCGGTCGATATAGCC-CC--CAACAATCATAAGTAT
* * * * *
24927845 TATCTTAAGACTCGGGTTTTTTCTCTCGACTCCACA
256 TATCTCAAGACCCGAGTTTTGTCTCCCGACTCCACA
* *
24927881 GAGAGCCCCGAGGGTTCACGAGTGGGAGTGCCTCGGTTGGTGGAGAGAGTACGTGCCTGAAGGAC
1 GAGAGCCCCGAGGGTTCACGAGTGGGAGTGCCTCGGTTGGTGGAGAGAGTACGTACCTGAAGGAT
** * * *
24927946 GTGTAGATAATTAATCAATGAAGTCGCA-A-GATGTTGATTGAGCCACCAATCAAGGCATGACTA
66 GTGTAGATAATTAATCAATGAAGTCGCACACGATGCGGATTGAACCACCAACCAAGGCATAACTA
* *
24928009 GCCTTTTCAAGGAGAAATGGTACCACTTGAGCCTTTTTATTGTGGAGGGGGGTCGA-CTCCTTTG
131 GCCTTTTCAAGGAGAAATGGTACCACTTGAGCCTTTTTATTGTGGAAGGGGGTC-ATCTCCTTCG
*
24928073 GGAGAAGTCTCCGAAGGGTCATCTGC-CGAGCGGTCGATATAGCCCCCAACAATCATAAGTATTG
195 GGAGAAGTCTCCGAAGGGTCAT-T-CACGAGCGGTCGATATAGCCCCCAACAATCATAAGTATTA
* * *
24928137 TCTCAGGACCCGAGTTTTGTCTCCCGACTCCGCG
258 TCTCAAGACCCGAGTTTTGTCTCCCGACTCCACA
* * * * * * * * *
24928171 GAAAGCCTCGAGGATTCACGGAGTAAGGAGTGCCTCGATTAGTGGAGAAAGTATGTACTTGAAGG
1 GAGAGCCCCGAGGGTTCAC-GAGT-GGGAGTGCCTCGGTTGGTGGAGAGAGTACGTACCTGAAGG
* * * *** * ** * * **
24928236 ATGTGTAGTTAATTAATCGATGAAGTTGTGTATGATATGGATCGAACCACCAACTAAGAAATAAC
64 ATGTGTAGATAATTAATCAATGAAGTCGCACACGATGCGGATTGAACCACCAACCAAGGCATAAC
* * *
24928301 TAGCCTTTTTAAAGAGATATGGTACCA
129 TAGCCTTTTCAAGGAGAAATGGTACCA
24928328 TTTGGGCTAG
Statistics
Matches: 368, Mismatches: 67, Indels: 21
0.81 0.15 0.05
Matches are distributed among these distances:
290 165 0.45
291 19 0.05
292 133 0.36
293 4 0.01
294 47 0.13
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (291 bp):
GAGAGCCCCGAGGGTTCACGAGTGGGAGTGCCTCGGTTGGTGGAGAGAGTACGTACCTGAAGGAT
GTGTAGATAATTAATCAATGAAGTCGCACACGATGCGGATTGAACCACCAACCAAGGCATAACTA
GCCTTTTCAAGGAGAAATGGTACCACTTGAGCCTTTTTATTGTGGAAGGGGGTCATCTCCTTCGG
GAGAAGTCTCCGAAGGGTCATTCACGAGCGGTCGATATAGCCCCCAACAATCATAAGTATTATCT
CAAGACCCGAGTTTTGTCTCCCGACTCCACA
Found at i:24930992 original size:44 final size:44
Alignment explanation
Indices: 24930931--24931390 Score: 284
Period size: 44 Copynumber: 10.7 Consensus size: 44
24930921 ATTGGATGCG
* *
24930931 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTA
* * * *
24930975 ATCCGCTCCACTGCAACTTCAGGGAGATAGGAT-TG-GTTTCTTCT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGTT-TT-A
* * * ***
24931019 GTCTGCTCCACTGCAACTTCAGGGAGATAAGA-C--TAGATACG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTA
* * ** *
24931060 ATCTGTTCTACTGCAACTTCAAAGAGATAAGATTTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTA
* * *
24931104 ATCCGCTCCACTGCAACTTCAGGGAGATAAGAT-TG-GTTTTTTCT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTG-GTTTT-A
* * * * ***
24931148 GTCTGCTCCGCTGCAACTTTAGGGAGATAAGA-C--TGGATACG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTA
* * * *
24931189 ATCTGCTCTACTGCAATTTCTGAGAGATAAGATCTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTA
* * * * *
24931233 ATCTACTCCACTGGAAGTTCAGGGAGATAGGAT-TG-GTGTCTTTT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTG-GT-TTTA
* * * * * * * **
24931277 GTCTGCTCCATTGTAATTTTAGGGAGATAAGA-CT-CGATGCT-
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTA
* * * *
24931318 ATCTGCTCTACTGCAAGTTCAGAGAGATAAGATATGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTA
* * * *
24931362 ATCCGCTTCACTACAACTTTAGGGAGATA
1 ATCTGCTCCACTGCAACTTCAGGGAGATA
24931391 GGATTGTAGC
Statistics
Matches: 305, Mismatches: 90, Indels: 42
0.70 0.21 0.10
Matches are distributed among these distances:
41 77 0.25
42 9 0.03
43 20 0.07
44 199 0.65
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTA
Found at i:24930995 original size:85 final size:85
Alignment explanation
Indices: 24930842--24931268 Score: 308
Period size: 85 Copynumber: 5.0 Consensus size: 85
24930832 GTCTTGTTAC
** * * * * * * * * *
24930842 TTCGATCCACTCTACTGTAACTTTAGGGGGATGAGATTTGTGGTTTTAGTCTACTCCACTACATC
1 TTCGATCTGCTCTACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTAATCTGCTCCACTGCAAC
**
24930907 TTCAAAGAGATAGGATTGGA
66 TTCAGGGAGATAGGATTGGA
* * *
24930927 TGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAAC
1 TTCGATCTGCTCTACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTAATCTGCTCCACTGCAAC
*
24930992 TTCAGGGAGATAGGATTGGTTTC
66 TTCAGGGAGATAGGATTGG---A
* * * *** * *
24931015 TTCTG-TCTGCTCCACTGCAACTTCAGGGAGATAAGA-C--TAGATACGATCTGTTCTACTGCAA
1 TTC-GATCTGCTCTACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTAATCTGCTCCACTGCAA
** * *
24931076 CTTCAAAGAGATAAGATTTGTGGT
65 CTTCAGGGAGATAGGA--T-TGGA
** * * * ** *
24931100 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGAT-TG-GTTTTTTCTGTCTGCTCCGCTGCA
1 TTCGATCTGCTCTACTGCAACTTCAGGGAGATAAGATCTGTG-GTTTT-AATCTGCTCCACTGCA
* * *
24931163 ACTTTAGGGAGATAAGACTGGA
64 ACTTCAGGGAGATAGGATTGGA
* * * * * * *
24931185 TACGATCTGCTCTACTGCAATTTCTGAGAGATAAGATCTGTGGTTTTAATCTACTCCACTGGAAG
1 TTCGATCTGCTCTACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTAATCTGCTCCACTGCAAC
24931250 TTCAGGGAGATAGGATTGG
66 TTCAGGGAGATAGGATTGG
24931269 TGTCTTTTGT
Statistics
Matches: 259, Mismatches: 68, Indels: 30
0.73 0.19 0.08
Matches are distributed among these distances:
85 189 0.73
86 6 0.02
87 4 0.02
88 59 0.23
89 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (85 bp):
TTCGATCTGCTCTACTGCAACTTCAGGGAGATAAGATCTGTGGTTTTAATCTGCTCCACTGCAAC
TTCAGGGAGATAGGATTGGA
Found at i:24931090 original size:129 final size:129
Alignment explanation
Indices: 24930929--24931396 Score: 693
Period size: 129 Copynumber: 3.6 Consensus size: 129
24930919 GGATTGGATG
24930929 CGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTT
1 CGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTT
*
24930994 CAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATA
66 CAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTAGATA
* * *
24931058 CGATCTGTTCTACTGCAACTTCAAAGAGATAAGATTTGTGGTTTTAATCCGCTCCACTGCAACTT
1 CGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTT
* * * *
24931123 CAGGGAGATAAGATTGGTTTTTTCTGTCTGCTCCGCTGCAACTTTAGGGAGATAAGACTGGATA
66 CAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTAGATA
* * ** * *
24931187 CGATCTGCTCTACTGCAATTTCTGAGAGATAAGATCTGTGGTTTTAATCTACTCCACTGGAAGTT
1 CGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTT
* * * * * * *
24931252 CAGGGAGATAGGATTGGTGTCTTTTGTCTGCTCCATTGTAATTTTAGGGAGATAAGACTCGATG
66 CAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTAGATA
* * * * *
24931316 CTATCTGCTCTACTGCAAGTTCAGAGAGATAAGATATGTGGTTTTAATCCGCTTCACTACAACTT
1 CGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTT
*
24931381 TAGGGAGATAGGATTG
66 CAGGGAGATAGGATTG
24931397 TAGCTTTACT
Statistics
Matches: 301, Mismatches: 38, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
129 301 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (129 bp):
CGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTT
CAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTAGATA
Found at i:24931691 original size:24 final size:24
Alignment explanation
Indices: 24931664--24931721 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
24931654 CGGATTGCCC
*
24931664 CCACTGTAATCTTTAAAGTTCAAT
1 CCACTGTAATCTTCAAAGTTCAAT
* *
24931688 CCACTGTAATCTTCAAGGTTCAGT
1 CCACTGTAATCTTCAAAGTTCAAT
24931712 CCACTGTAAT
1 CCACTGTAAT
24931722 TTTGGAACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.34
Consensus pattern (24 bp):
CCACTGTAATCTTCAAAGTTCAAT
Found at i:24937370 original size:51 final size:51
Alignment explanation
Indices: 24937230--24937372 Score: 211
Period size: 50 Copynumber: 2.8 Consensus size: 51
24937220 ATGTGAAAGT
*
24937230 GAAAGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCA
1 GAAAGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCA
* *
24937281 GAAA--GATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTACGTGTATC-
1 GAAAGTGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCA
*
24937330 GAATAGTGATGGTCACATGTGTAGTACTATGTGTAGGCTACTA
1 GAA-AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
24937373 TGTGAACCGG
Statistics
Matches: 83, Mismatches: 5, Indels: 8
0.86 0.05 0.08
Matches are distributed among these distances:
49 6 0.07
50 39 0.47
51 35 0.42
52 3 0.04
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (51 bp):
GAAAGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCA
Found at i:24937469 original size:46 final size:43
Alignment explanation
Indices: 24937378--24937476 Score: 110
Period size: 46 Copynumber: 2.2 Consensus size: 43
24937368 TACTATGTGA
* *
24937378 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCTGATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTAATCCC
* *
24937421 ACCGGATATCATTGATTACAAAGGGTGGTTGCTGTGTGCTAAAT-CC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGCTATGTGCT-AATCCC
24937467 ACCGTGTATC
1 ACCG-GTATC
24937477 TGTTATTATT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
43 5 0.11
44 11 0.23
45 2 0.04
46 26 0.55
47 3 0.06
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTAATCCC
Found at i:24937645 original size:37 final size:39
Alignment explanation
Indices: 24937577--24937657 Score: 103
Period size: 38 Copynumber: 2.1 Consensus size: 39
24937567 ATGTGTGGAA
* * *
24937577 TTGAATTGAATATTGACTTGAAAATGGAAAAGT-AAATT
1 TTGAACTGAATAGTGACTTGAAAATGAAAAAGTGAAATT
*
24937615 TTGAACTGAATAGTGA-TTGAAAGTGAAAAAGTGAAATT
1 TTGAACTGAATAGTGACTTGAAAATGAAAAAGTGAAATT
*
24937653 ATGAA
1 TTGAA
24937658 AAAGTAGAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 14 0.38
38 23 0.62
ACGTcount: A:0.46, C:0.02, G:0.21, T:0.31
Consensus pattern (39 bp):
TTGAACTGAATAGTGACTTGAAAATGAAAAAGTGAAATT
Found at i:24944982 original size:16 final size:16
Alignment explanation
Indices: 24944961--24944995 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
24944951 TTTTATAATG
*
24944961 AAATGCCATGCAGCCA
1 AAATGCCATGCAACCA
24944977 AAATGCCATGCAACCA
1 AAATGCCATGCAACCA
24944993 AAA
1 AAA
24944996 CAAAACACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.46, C:0.29, G:0.14, T:0.11
Consensus pattern (16 bp):
AAATGCCATGCAACCA
Found at i:24946764 original size:20 final size:20
Alignment explanation
Indices: 24946727--24946764 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
24946717 ATATAGATAG
*
24946727 ATATGTAAACAAATTATAAA
1 ATATGTAAACAAAATATAAA
24946747 ATATGTATAA-AAAATATA
1 ATATGTA-AACAAAATATA
24946765 TGAGTACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.32
Consensus pattern (20 bp):
ATATGTAAACAAAATATAAA
Found at i:24946961 original size:3 final size:3
Alignment explanation
Indices: 24946953--24947005 Score: 61
Period size: 3 Copynumber: 16.7 Consensus size: 3
24946943 TTAATAAACG
* *
24946953 TAA TAA TAAA TAGA TAAA TAA GAG TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA T-AA TA-A T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
24947001 TAA TA
1 TAA TA
24947006 GTAAAAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
3 35 0.81
4 7 0.16
5 1 0.02
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:24947046 original size:18 final size:18
Alignment explanation
Indices: 24947025--24947064 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
24947015 TAAACAATAG
* *
24947025 TAATAACAGTATTAAACA
1 TAATAACAGTAGTAAAAA
*
24947043 TAATAATAGTAGTAAAAA
1 TAATAACAGTAGTAAAAA
24947061 TAAT
1 TAAT
24947065 GATAACATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.30
Consensus pattern (18 bp):
TAATAACAGTAGTAAAAA
Found at i:24950823 original size:23 final size:22
Alignment explanation
Indices: 24950757--24950908 Score: 189
Period size: 23 Copynumber: 6.8 Consensus size: 22
24950747 TAGGGTTTTT
* *
24950757 AGGGTTTATGGTTTTTAAGTTA
1 AGGGTTTAGGGTTTTTAATTTA
* *
24950779 AGGG-TTAAGGTTTTTAAGTTA
1 AGGGTTTAGGGTTTTTAATTTA
24950800 AGGGTTTAGGGTTTTTAATTTTA
1 AGGGTTTAGGGTTTTTAA-TTTA
*
24950823 AGGGTTTAGGGTTTTTAATTAA
1 AGGGTTTAGGGTTTTTAATTTA
** * *
24950845 ATTAGTTTAGAGTTTTTAAGTTA
1 A-GGGTTTAGGGTTTTTAATTTA
24950868 AGGGTTTAGGGTTTTTAATTTTA
1 AGGGTTTAGGGTTTTTAA-TTTA
24950891 AGGGTTTAGGGTTTTTAA
1 AGGGTTTAGGGTTTTTAA
24950909 GTAATAACTC
Statistics
Matches: 113, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
21 20 0.18
22 34 0.30
23 59 0.52
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.49
Consensus pattern (22 bp):
AGGGTTTAGGGTTTTTAATTTA
Found at i:24950869 original size:45 final size:43
Alignment explanation
Indices: 24950767--24950910 Score: 164
Period size: 45 Copynumber: 3.2 Consensus size: 43
24950757 AGGGTTTATG
* * *
24950767 GTTTTTAAGTTAAGGG-TTAAGGTTTTTAAGTTAAGGGTTTAGG
1 GTTTTTAAGTTAAGGGTTTAGGGTTTTTAA-TTAAGAGTTTAGA
* *
24950810 GTTTTTAATTTTAAGGGTTTAGGGTTTTTAATTAAATTAGTTTAGA
1 GTTTTTAA-GTTAAGGGTTTAGGGTTTTTAATT-AA-GAGTTTAGA
* *
24950856 GTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTTTAAGGGTTTAGG
1 GTTTTTAAGTTAAGGGTTTAGGGTTTTTAA--TTAAGAGTTTAGA
24950901 GTTTTTAAGT
1 GTTTTTAAGT
24950911 AATAACTCAA
Statistics
Matches: 86, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
43 8 0.09
44 9 0.10
45 51 0.59
46 16 0.19
47 2 0.02
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.49
Consensus pattern (43 bp):
GTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAGAGTTTAGA
Found at i:24952056 original size:7 final size:7
Alignment explanation
Indices: 24952046--24952071 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
24952036 TTATATACAT
24952046 AATACTA
1 AATACTA
24952053 AATACTA
1 AATACTA
24952060 AATACTA
1 AATACTA
24952067 AATAC
1 AATAC
24952072 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:24952278 original size:20 final size:20
Alignment explanation
Indices: 24952241--24952278 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
24952231 TTTATTTTTA
*
24952241 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
24952261 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
24952279 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:24953199 original size:20 final size:20
Alignment explanation
Indices: 24953162--24953219 Score: 98
Period size: 20 Copynumber: 2.8 Consensus size: 20
24953152 TACGGTTTAA
24953162 AAAATTATTTAAAAAAAATTTT
1 AAAATTATTT--AAAAAATTTT
24953184 AAAATTATTTAAAAAATTTT
1 AAAATTATTTAAAAAATTTT
24953204 AAAATTATTTAAAAAA
1 AAAATTATTTAAAAAA
24953220 AGGGAGTTAC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
20 26 0.72
22 10 0.28
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AAAATTATTTAAAAAATTTT
Found at i:24953214 original size:10 final size:10
Alignment explanation
Indices: 24953162--24953217 Score: 51
Period size: 10 Copynumber: 5.4 Consensus size: 10
24953152 TACGGTTTAA
24953162 AAAATTATTT
1 AAAATTATTT
**
24953172 AAAAAAAATTTT
1 -AAAATTA-TTT
24953184 AAAATTATTT
1 AAAATTATTT
*
24953194 AAAA-AATTTT
1 AAAATTA-TTT
24953204 AAAATTATTT
1 AAAATTATTT
24953214 AAAA
1 AAAA
24953218 AAAGGGAGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
9 1 0.03
10 21 0.58
11 11 0.31
12 3 0.08
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
AAAATTATTT
Found at i:24953289 original size:11 final size:11
Alignment explanation
Indices: 24953275--24953329 Score: 60
Period size: 11 Copynumber: 4.9 Consensus size: 11
24953265 TTAAATATGG
24953275 ATTTGAGAGAA
1 ATTTGAGAGAA
*
24953286 ATTTG-GAAGGA
1 ATTTGAG-AGAA
24953297 ATTTGAGAGCAA
1 ATTTGAGAG-AA
24953309 A-TTGAGAGGAA
1 ATTTGAGA-GAA
24953320 ATTTGAGAGA
1 ATTTGAGAGA
24953330 GGATTAGTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
10 1 0.03
11 26 0.70
12 10 0.27
ACGTcount: A:0.42, C:0.02, G:0.31, T:0.25
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:24953322 original size:23 final size:22
Alignment explanation
Indices: 24953275--24953329 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
24953265 TTAAATATGG
24953275 ATTTGAGAGAAATTTGGAAGGA
1 ATTTGAGAGAAATTTGGAAGGA
24953297 ATTTGAGAGCAAA-TT-GAGAGGAA
1 ATTTGAGAG-AAATTTGGA-AGG-A
24953320 ATTTGAGAGA
1 ATTTGAGAGA
24953330 GGATTAGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
21 2 0.07
22 15 0.50
23 13 0.43
ACGTcount: A:0.42, C:0.02, G:0.31, T:0.25
Consensus pattern (22 bp):
ATTTGAGAGAAATTTGGAAGGA
Found at i:24956770 original size:24 final size:24
Alignment explanation
Indices: 24956743--24956797 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
24956733 AATTAATTAC
24956743 AATAAATAATTAAAATGA-TTATAA
1 AATAAATAATTAAAAT-ATTTATAA
24956767 AATAAATAATTAAAATATTTATAA
1 AATAAATAATTAAAATATTTATAA
*
24956791 AAAAAAT
1 AATAAAT
24956798 TATGACACAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 1 0.03
24 28 0.97
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (24 bp):
AATAAATAATTAAAATATTTATAA
Found at i:24956782 original size:13 final size:13
Alignment explanation
Indices: 24956736--24956783 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
24956726 CAATAGTAAT
*
24956736 TAATTACAATAAA
1 TAATTAAAATAAA
*
24956749 TAATTAAAAT-GA
1 TAATTAAAATAAA
*
24956761 TTA-TAAAATAAA
1 TAATTAAAATAAA
24956773 TAATTAAAATA
1 TAATTAAAATA
24956784 TTTATAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
11 6 0.21
12 6 0.21
13 16 0.57
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (13 bp):
TAATTAAAATAAA
Found at i:24957187 original size:25 final size:23
Alignment explanation
Indices: 24957154--24957199 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
24957144 GACATTATAA
24957154 TATAATAAATAATTAAAAATATATC
1 TATAATAAATAA-T-AAAATATATC
*
24957179 TATATTAAATAATAAAATATA
1 TATAATAAATAATAAAATATA
24957200 AATTACAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 8 0.40
24 1 0.05
25 11 0.55
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (23 bp):
TATAATAAATAATAAAATATATC
Found at i:24957546 original size:21 final size:21
Alignment explanation
Indices: 24957520--24957559 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
24957510 ACAGGATAGG
* *
24957520 TGACGTGGCTAGTTAATTAAC
1 TGACGTGGCCAATTAATTAAC
24957541 TGACGTGGCCAATTAATTA
1 TGACGTGGCCAATTAATTA
24957560 GCCACATTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (21 bp):
TGACGTGGCCAATTAATTAAC
Found at i:24959182 original size:2 final size:2
Alignment explanation
Indices: 24959175--24959215 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
24959165 CCCCTTGTTC
*
24959175 TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24959216 TAATTTTTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:24970547 original size:4 final size:4
Alignment explanation
Indices: 24970532--24971275 Score: 860
Period size: 4 Copynumber: 186.0 Consensus size: 4
24970522 TTAACATTTT
* * *
24970532 CATA CCTA CATA CATA CATA CCTA CATA CATA CATG CA-A GCATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA -CATA CATA
* * *
24970580 CATG CATG CATA CATA CATA CATG CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
24970628 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA TATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
24970676 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * * * *
24970724 CATG CATA CATA CATA CATG CATA CATG CATA CATG CATG CATC CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * * * * * *
24970772 CATG CATG CATC CATA CATG CATG CATC CATA CATA CATA CATG CATC
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
24970820 CATA CATA CATA CATG CATA CATA CATA CATA CATG CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * * * * * *
24970868 CATA CATG CATA CATG CATG CATG CATA CATG CATG CATG CATC CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * * * * * *
24970916 CATG CATG CATC CATA CATG CATG CATC CATA CATA CATA CATG CATC
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * *
24970964 CATA CATA CATA CATG CATC CATA CATA CATA CATG CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * * * *
24971012 CATA CATG CATA CATA CATA CATA CATG CATG CATG CATA CATG CATG
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * * * * * * * * *
24971060 CATG CATC CATG CATG CATG CATC CATG CATG CATG CATC CATA CATG
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * * *
24971108 CATG CATG CATC CATA CATG CATG CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
24971156 CATA CATA TATA CATA CATA CATA CATA TATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
24971204 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* *
24971252 CATG CATA CATA CATG CATA CATA
1 CATA CATA CATA CATA CATA CATA
24971276 TTTACTAAAG
Statistics
Matches: 659, Mismatches: 79, Indels: 4
0.89 0.11 0.01
Matches are distributed among these distances:
4 658 1.00
5 1 0.00
ACGTcount: A:0.41, C:0.27, G:0.07, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:24981911 original size:10 final size:10
Alignment explanation
Indices: 24981898--24981959 Score: 65
Period size: 10 Copynumber: 6.3 Consensus size: 10
24981888 TAGAATATTT
24981898 AAAAATTATA
1 AAAAATTATA
24981908 AAAAATTAT-
1 AAAAATTATA
24981917 AAAAATTATTA
1 AAAAATTA-TA
* *
24981928 GAAAATT-CA
1 AAAAATTATA
* *
24981937 AAATATTGTA
1 AAAAATTATA
24981947 AAAAATTATA
1 AAAAATTATA
24981957 AAA
1 AAA
24981960 CTATTAGAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
9 14 0.33
10 22 0.52
11 6 0.14
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.31
Consensus pattern (10 bp):
AAAAATTATA
Found at i:24981919 original size:19 final size:19
Alignment explanation
Indices: 24981897--24981959 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
24981887 TTAGAATATT
24981897 TAAAAATTATAAAAAATTA
1 TAAAAATTATAAAAAATTA
*
24981916 TAAAAATTATTAGAAAATTCA
1 TAAAAATTA-TAAAAAATT-A
* *
24981937 -AAATATTGTAAAAAATTA
1 TAAAAATTATAAAAAATTA
24981955 TAAAA
1 TAAAA
24981960 CTATTAGAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
18 1 0.03
19 20 0.56
20 14 0.39
21 1 0.03
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (19 bp):
TAAAAATTATAAAAAATTA
Found at i:24981929 original size:38 final size:38
Alignment explanation
Indices: 24981871--24981969 Score: 121
Period size: 38 Copynumber: 2.6 Consensus size: 38
24981861 TAATTTTTTT
* * *
24981871 AAAAATT-TAAAATATGTTAGAATATTTAAAA-ATTATA
1 AAAAATTATAAAAT-TATTAGAAAATTCAAAATATTATA
*
24981908 AAAAATTATAAAAATTATTAGAAAATTCAAAATATTGTA
1 AAAAATTAT-AAAATTATTAGAAAATTCAAAATATTATA
*
24981947 AAAAATTATAAAACTATTAGAAA
1 AAAAATTATAAAATTATTAGAAA
24981970 TTGTAATTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
37 7 0.13
38 28 0.52
39 19 0.35
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (38 bp):
AAAAATTATAAAATTATTAGAAAATTCAAAATATTATA
Found at i:24982571 original size:28 final size:29
Alignment explanation
Indices: 24982510--24982574 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 29
24982500 TATTTTTATA
*
24982510 AATTTTTAATAATTTGAATAATTATTTTT
1 AATTTTTAATAATTTGAATAATTATTTGT
* * *
24982539 TATTTTT-TTAATTTTAATAATTATTTGT
1 AATTTTTAATAATTTGAATAATTATTTGT
24982567 AATTTTTA
1 AATTTTTA
24982575 TATTCTTTTC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
28 24 0.80
29 6 0.20
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (29 bp):
AATTTTTAATAATTTGAATAATTATTTGT
Found at i:24983071 original size:105 final size:104
Alignment explanation
Indices: 24982857--24983048 Score: 240
Period size: 106 Copynumber: 1.8 Consensus size: 104
24982847 GTGTATTTGT
* * ** *
24982857 AATGACCTGGTTTTTAGTGGTGTTAGAAAATGCCATTTCAAAACCCTATTTTTGTAAACTGTGTC
1 AATGACCTGGTTTTCAGTGGTGTTAGAAAATACCATTTCAAAACCCTATTTTCATAAACCGTGTC
* ** *
24982922 CATAAATATTAAATATCTATGTTGTTGTCTGTATATCTGT
66 CATAAATATTAAATATATATGTTGGAGTCTGTATA-CTGA
* ***
24982962 AATGACCTGGTTTTCAGTGGTGTTAGAAAATACGATTTTTGGAACCCTATTTTCATAAACCGTGT
1 AATGACCTGGTTTTCAGTGGTGTTAGAAAATACCA-TTTCAAAACCCTATTTTCATAAACCGTGT
24983027 CCATAAATATTAAATATGATAT
65 CCATAAATATTAAATAT-ATAT
24983049 TTACGGAGTT
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
105 32 0.43
106 40 0.53
107 3 0.04
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.40
Consensus pattern (104 bp):
AATGACCTGGTTTTCAGTGGTGTTAGAAAATACCATTTCAAAACCCTATTTTCATAAACCGTGTC
CATAAATATTAAATATATATGTTGGAGTCTGTATACTGA
Found at i:24985068 original size:34 final size:34
Alignment explanation
Indices: 24985028--24985095 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
24985018 TTGAATTAAT
24985028 TTACCACTTTATATAGGTACACATTCATATGGAA
1 TTACCACTTTATATAGGTACACATTCATATGGAA
24985062 TTACCACTTTATATAGGTACACATTCATATGGAA
1 TTACCACTTTATATAGGTACACATTCATATGGAA
24985096 ATGGTTATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (34 bp):
TTACCACTTTATATAGGTACACATTCATATGGAA
Found at i:24986030 original size:6 final size:7
Alignment explanation
Indices: 24986014--24986043 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
24986004 TTAGTAAAAC
24986014 TTTTAAT
1 TTTTAAT
24986021 TTTTAAT
1 TTTTAAT
24986028 TTTTAAT
1 TTTTAAT
*
24986035 TTTTCAT
1 TTTTAAT
24986042 TT
1 TT
24986044 AACAAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTTAAT
Found at i:24986370 original size:18 final size:19
Alignment explanation
Indices: 24986333--24986372 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
24986323 ATACCATTAT
24986333 TATTTATTTATATATTTTC
1 TATTTATTTATATATTTTC
24986352 TATTTAGTTTAT-T-TTTTC
1 TATTTA-TTTATATATTTTC
24986370 TAT
1 TAT
24986373 CTTTAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 8 0.40
19 7 0.35
20 5 0.25
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.70
Consensus pattern (19 bp):
TATTTATTTATATATTTTC
Found at i:24987914 original size:9 final size:9
Alignment explanation
Indices: 24987892--24987955 Score: 65
Period size: 9 Copynumber: 6.8 Consensus size: 9
24987882 CATTTGTTAG
*
24987892 AAAAAAAAG
1 AAAAAAAAT
*
24987901 GAAAAAAAT
1 AAAAAAAAT
24987910 AAAAAAAAT
1 AAAAAAAAT
24987919 AAAAAAAAT
1 AAAAAAAAT
* *
24987928 AATAATTACAT
1 AA-AA-AAAAT
24987939 AAAAAATAAT
1 AAAAAA-AAT
24987949 AAAAAAA
1 AAAAAAA
24987956 TACTAAATTG
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
9 28 0.62
10 12 0.27
11 5 0.11
ACGTcount: A:0.81, C:0.02, G:0.03, T:0.14
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:24988745 original size:18 final size:17
Alignment explanation
Indices: 24988712--24988746 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24988702 ATATCAGTAT
24988712 ATAAAAAAATAATAAAA
1 ATAAAAAAATAATAAAA
*
24988729 ATAAAATAAATAGTAAAA
1 ATAAAA-AAATAATAAAA
24988747 CGAAAATGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (17 bp):
ATAAAAAAATAATAAAA
Found at i:24989110 original size:26 final size:26
Alignment explanation
Indices: 24989074--24989133 Score: 120
Period size: 26 Copynumber: 2.3 Consensus size: 26
24989064 GCCTCTGTTC
24989074 ATTTTGGGTCTTGCAGACCCATTTAT
1 ATTTTGGGTCTTGCAGACCCATTTAT
24989100 ATTTTGGGTCTTGCAGACCCATTTAT
1 ATTTTGGGTCTTGCAGACCCATTTAT
24989126 ATTTTGGG
1 ATTTTGGG
24989134 CTTTTTACCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.18, C:0.17, G:0.22, T:0.43
Consensus pattern (26 bp):
ATTTTGGGTCTTGCAGACCCATTTAT
Found at i:24989413 original size:44 final size:45
Alignment explanation
Indices: 24989361--24989646 Score: 218
Period size: 44 Copynumber: 6.5 Consensus size: 45
24989351 GATCTGCTCT
* * *
24989361 CTGCAACTTCAGAGAGATAAGATCTGT-GATTTTAA-TTCGCTCCA
1 CTGCAACTTCAGGGAGATAAGATCTATCGATTTTAACCT-GCTCCA
* ** *
24989405 CTGCAACTTCAGGGAGATAGGA-CTATCGGCTTTAACCTGTTCCA
1 CTGCAACTTCAGGGAGATAAGATCTATCGATTTTAACCTGCTCCA
* * * ** *
24989449 CTGCAACTTCAGGGAGATAATG-T-TTTCCATCTTCAGTCTGCCCCA
1 CTGCAACTTCAGGGAGATAA-GATCTATCGAT-TTTAACCTGCTCCA
* **
24989494 CTGCAACTTCA-GGAGGATAAGA-CT-T-GCTTACTTAGTCTGCTCCA
1 CTGCAACTTCAGGGA-GATAAGATCTATCGATT--TTAACCTGCTCCA
* *
24989538 CTGCAACTTCAGGGAGATAAGATCCA-AGATTTTAATCC-GCTCCA
1 CTGCAACTTCAGGGAGATAAGATCTATCGATTTTAA-CCTGCTCCA
* * * **
24989582 CTACAACTTTAGGGAGATAGGAT-TATCGGCTTTAACCTGCTCCA
1 CTGCAACTTCAGGGAGATAAGATCTATCGATTTTAACCTGCTCCA
24989626 CTGCAACTTCAGGGAGATAAG
1 CTGCAACTTCAGGGAGATAAG
24989647 GTTTGCCATC
Statistics
Matches: 190, Mismatches: 35, Indels: 34
0.73 0.14 0.13
Matches are distributed among these distances:
42 1 0.01
43 7 0.04
44 146 0.77
45 33 0.17
46 3 0.02
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (45 bp):
CTGCAACTTCAGGGAGATAAGATCTATCGATTTTAACCTGCTCCA
Found at i:24989538 original size:89 final size:88
Alignment explanation
Indices: 24989445--24989735 Score: 308
Period size: 89 Copynumber: 3.3 Consensus size: 88
24989435 TTTAACCTGT
*
24989445 TCCACTGCAACTTCAGGGAGATAATGTTTTCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGG
1 TCCACTGCAACTTCAGGGAGATAA-GTTTTCCATCTTCAGTCTGCCCCACTGCAACTTTAGGAGG
24989510 ATAAGACTTGCTTACTTAGTCTGC
65 ATAAGACTTGCTTACTTAGTCTGC
* * * * * *
24989534 TCCACTGCAACTTCAGGGAGATAAG--ATCCAAGAT-TTTAATCCGCTCCACTACAACTTTAGG-
1 TCCACTGCAACTTCAGGGAGATAAGTTTTCC---ATCTTCAGTCTGCCCCACTGCAACTTTAGGA
* * **
24989595 GAGATAGGATTATCGGC-T--TTAACCTGC
63 G-GATAAGACT-T--GCTTACTTAGTCTGC
* * *
24989622 TCCACTGCAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCCCATTGTAACTTTAGGAGG
1 TCCACTGCAACTTCAGGGAGATAA-GTTTTCCATCTTCAGTCTGCCCCACTGCAACTTTAGGAGG
*
24989687 ATAAGAGTTGCTTACTTAGTCTGC
65 ATAAGACTTGCTTACTTAGTCTGC
*
24989711 TCCAGTGCAACTTCAGGGAGATAAG
1 TCCACTGCAACTTCAGGGAGATAAG
24989736 ACTAGATGCG
Statistics
Matches: 162, Mismatches: 25, Indels: 31
0.74 0.11 0.14
Matches are distributed among these distances:
86 5 0.03
87 2 0.01
88 64 0.40
89 85 0.52
90 2 0.01
91 4 0.02
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (88 bp):
TCCACTGCAACTTCAGGGAGATAAGTTTTCCATCTTCAGTCTGCCCCACTGCAACTTTAGGAGGA
TAAGACTTGCTTACTTAGTCTGC
Found at i:24989611 original size:177 final size:177
Alignment explanation
Indices: 24989353--24989736 Score: 608
Period size: 177 Copynumber: 2.2 Consensus size: 177
24989343 CTAGATGCGA
* * *** * *
24989353 TCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATTCGCTCCACTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCCAAGATTTTAATCCGCTCCACTACAACTTCAG
* * *
24989417 GGAGATAGGACTATCGGCTTTAACCTGTTCCACTGCAACTTCAGGGAGATAATGTTTTCCATCTT
66 GGAGATAGGACTATCGGCTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCCATCTT
24989482 CAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAG
131 CAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAG
*
24989529 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCCAAGATTTTAATCCGCTCCACTACAACTTTAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCCAAGATTTTAATCCGCTCCACTACAACTTCAG
*
24989594 GGAGATAGGATTATCGGCTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCCATCTT
66 GGAGATAGGACTATCGGCTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCCATCTT
* * * *
24989659 CAGTCTGCCCCATTGTAACTTTAGGAGGATAAGAGTTGCTTACTTAG
131 CAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAG
*
24989706 TCTGCTCCAGTGCAACTTCAGGGAGATAAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA
24989737 CTAGATGCGA
Statistics
Matches: 190, Mismatches: 17, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
176 6 0.03
177 184 0.97
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (177 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATCCAAGATTTTAATCCGCTCCACTACAACTTCAG
GGAGATAGGACTATCGGCTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCCATCTT
CAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAG
Found at i:24989723 original size:44 final size:46
Alignment explanation
Indices: 24989445--24989736 Score: 193
Period size: 44 Copynumber: 6.6 Consensus size: 46
24989435 TTTAACCTGT
* *
24989445 TCCACTGCAACTTCAGGGAGATAA-TGTTTTCCATCTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGAGTTTGCCATCTTCAGTCTGC
* * *
24989490 CCCACTGCAACTTCA-GGAGGATAAGA-CTTG-CTTACTT-AGTCTGC
1 TCCACTGCAACTTCAGGGA-GATAAGAGTTTGCCAT-CTTCAGTCTGC
***** * * *
24989534 TCCACTGCAACTTCAGGGAGATAAGA-TCCAAGAT-TTTAATCCGC
1 TCCACTGCAACTTCAGGGAGATAAGAGTTTGCCATCTTCAGTCTGC
* * * * **
24989578 TCCACTACAACTTTAGGGAGATAGGA-TTATCGGC-T-TT-AACCTGC
1 TCCACTGCAACTTCAGGGAGATAAGAGTT-T-GCCATCTTCAGTCTGC
24989622 TCCACTGCAACTTCAGGGAGATAAG-GTTTGCCATCTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGAGTTTGCCATCTTCAGTCTGC
* * * * *
24989667 CCCATTGTAACTTTA-GGAGGATAAGAG-TTG-CTTACTT-AGTCTGC
1 TCCACTGCAACTTCAGGGA-GATAAGAGTTTGCCAT-CTTCAGTCTGC
*
24989711 TCCAGTGCAACTTCAGGGAGATAAGA
1 TCCACTGCAACTTCAGGGAGATAAGA
24989737 CTAGATGCGA
Statistics
Matches: 192, Mismatches: 39, Indels: 33
0.73 0.15 0.12
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
44 123 0.64
45 62 0.32
46 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (46 bp):
TCCACTGCAACTTCAGGGAGATAAGAGTTTGCCATCTTCAGTCTGC
Found at i:24997083 original size:22 final size:20
Alignment explanation
Indices: 24997057--24997101 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
24997047 TGTAAATTAA
*
24997057 TATTTTTAATTTAGTCTCACAT
1 TATTTTTAA--TAATCTCACAT
*
24997079 TATTTTTGATAATCTCACAT
1 TATTTTTAATAATCTCACAT
24997099 TAT
1 TAT
24997102 GAGTAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.62
22 8 0.38
ACGTcount: A:0.29, C:0.13, G:0.04, T:0.53
Consensus pattern (20 bp):
TATTTTTAATAATCTCACAT
Found at i:24999408 original size:19 final size:19
Alignment explanation
Indices: 24999384--24999425 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
24999374 TATGAAAAAC
24999384 TAAAAATTCCTACAATTCA
1 TAAAAATTCCTACAATTCA
*
24999403 TAAAAATTCCTACCATTCA
1 TAAAAATTCCTACAATTCA
24999422 TAAA
1 TAAA
24999426 TATAATTGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAAAATTCCTACAATTCA
Found at i:24999529 original size:19 final size:19
Alignment explanation
Indices: 24999492--24999529 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
24999482 TGGAAATTAC
*
24999492 GTATTTAGAATATAAATAT
1 GTATTTAGAAAATAAATAT
24999511 GTATTTA-AAAATAATATAT
1 GTATTTAGAAAATAA-ATAT
24999530 AATAAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (19 bp):
GTATTTAGAAAATAAATAT
Found at i:25000633 original size:78 final size:78
Alignment explanation
Indices: 25000538--25000726 Score: 297
Period size: 78 Copynumber: 2.4 Consensus size: 78
25000528 TGTTTTAAGT
* *
25000538 ATGTAAGATTCGAAACTAATAATAACACATATGAGTACAATTTATTTAAGTAAATTATCAAAACA
1 ATGTAAGATTCGAAACTAATAATAACACATATGAATACAATTTACTTAAGTAAATTATCAAAACA
*
25000603 CTTAAATAATAAA
66 CTAAAATAATAAA
* * * * *
25000616 ATGTAAGATTTGAAACTAATAATATCATATATGAATACAATTTACTTAAGTAATTTATCAAAACG
1 ATGTAAGATTCGAAACTAATAATAACACATATGAATACAATTTACTTAAGTAAATTATCAAAACA
*
25000681 CTAAAATAATGAA
66 CTAAAATAATAAA
25000694 ATGTAAGATTCGAAACTAATAATAACACATATG
1 ATGTAAGATTCGAAACTAATAATAACACATATG
25000727 CAATGTATAT
Statistics
Matches: 99, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
78 99 1.00
ACGTcount: A:0.50, C:0.10, G:0.09, T:0.31
Consensus pattern (78 bp):
ATGTAAGATTCGAAACTAATAATAACACATATGAATACAATTTACTTAAGTAAATTATCAAAACA
CTAAAATAATAAA
Found at i:25007283 original size:39 final size:39
Alignment explanation
Indices: 25007229--25007309 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
25007219 ATGCAATCGA
25007229 TTTGTTCATCTTTAAAGCTTTACTTGAACTATTGTTTTC
1 TTTGTTCATCTTTAAAGCTTTACTTGAACTATTGTTTTC
25007268 TTTGTTCATCTTTAAAGCTTTACTTGAACTATTGTTTTC
1 TTTGTTCATCTTTAAAGCTTTACTTGAACTATTGTTTTC
25007307 TTT
1 TTT
25007310 TCACTTTAGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (39 bp):
TTTGTTCATCTTTAAAGCTTTACTTGAACTATTGTTTTC
Found at i:25007861 original size:62 final size:62
Alignment explanation
Indices: 25007699--25007993 Score: 464
Period size: 62 Copynumber: 4.7 Consensus size: 62
25007689 ATACAGTGCA
* * * * *
25007699 ATTTCCCCATTCCCATTTCCCCTCTTTCACCGATCAAAGTCCCAAACCCTGTGCCCTCAGTGCA
1 ATTT-CCCATTCCCATTTCCCCTCTTCCACCGATCAAAGTCCCAAACCCCGTGCCCTC-CTCCC
* *
25007763 ATTTCCCCATTCCCATTTCCCCTCTTCCACTGATCAAAGTCCCAAACCCCCTGCCCTCCTCCC
1 ATTT-CCCATTCCCATTTCCCCTCTTCCACCGATCAAAGTCCCAAACCCCGTGCCCTCCTCCC
* *
25007826 ATTTCACATTCCCATTTCCCCTCTTCCACCAATCAAAGTCCCAAACCCCGTGCCCTCCTCCC
1 ATTTCCCATTCCCATTTCCCCTCTTCCACCGATCAAAGTCCCAAACCCCGTGCCCTCCTCCC
* *
25007888 ATTTCCCATTCCCATTTCCCCTCTTCCACTGATCAAAGTTCCAAACCCCGTGCCCTCCTCCC
1 ATTTCCCATTCCCATTTCCCCTCTTCCACCGATCAAAGTCCCAAACCCCGTGCCCTCCTCCC
25007950 ATTTCCCATTCCCATTTCCCCTCTTCCACCGATCAAAGTCCCAA
1 ATTTCCCATTCCCATTTCCCCTCTTCCACCGATCAAAGTCCCAA
25007994 TCCACCTCCA
Statistics
Matches: 214, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
62 154 0.72
63 6 0.03
64 54 0.25
ACGTcount: A:0.20, C:0.46, G:0.06, T:0.28
Consensus pattern (62 bp):
ATTTCCCATTCCCATTTCCCCTCTTCCACCGATCAAAGTCCCAAACCCCGTGCCCTCCTCCC
Found at i:25009797 original size:21 final size:21
Alignment explanation
Indices: 25009762--25009844 Score: 112
Period size: 21 Copynumber: 3.9 Consensus size: 21
25009752 AAGAACAAAG
*
25009762 CAAAAAAGAGAGGAGAAACCAA
1 CAAAAACGAG-GGAGAAACCAA
25009784 CAAAAACGAGGGAGAAACCAA
1 CAAAAACGAGGGAGAAACCAA
* *
25009805 CAAGAACAAGGGAGAAACCAA
1 CAAAAACGAGGGAGAAACCAA
*
25009826 CAAGAACGAGGGGAGAAAC
1 CAAAAACGA-GGGAGAAAC
25009845 TGTTGTTTTA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
21 38 0.68
22 18 0.32
ACGTcount: A:0.57, C:0.17, G:0.27, T:0.00
Consensus pattern (21 bp):
CAAAAACGAGGGAGAAACCAA
Done.