Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55868233
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 983842 characters in sequence are not A, C, G, or T
File 97 of 187
Found at i:28953026 original size:352 final size:352
Alignment explanation
Indices: 28952519--28953206 Score: 1142
Period size: 352 Copynumber: 2.0 Consensus size: 352
28952509 CCTACTCCAG
28952519 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTGGGAAGACAAGAT
1 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTGGGAAGACAAGAT
* * *
28952584 TGACCATATTCGATCTGCTCCACTACTGCTTACGGTGACAGAATCTGCAATCTTCAACCTACTCC
66 TCACCATATTCGATCTGCTCCACTACTGCTTACAGTGACAGAATCTGCAATCATCAACCTACTCC
* *
28952649 ACTACTGCTTAGGGTGATTGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTGGGAAGATAAG
131 ACTACTGCTTACGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTGGGAAGATAAG
* * * * * *
28952714 ATTCACTATCTTCGATCTGCTCCACTACTGCTTACGGTGACAGAATTTGTAATCTTTAACCTACA
196 ATTCACCATCGTCGATCTGCTCCACAACTGCTTACGGAGACAGAATCTGCAATCTTTAACCTACA
*
28952779 CCACTACTGCTTTGGGTGATAGGACTAATAGCTTAAATCCGCTTCTCCACTGTATTGGGAAAATA
261 CCACTACTGCTTTAGGTGATAGGACTAATAGCTTAAATCCGCTTCTCCACTGTATTGGGAAAATA
28952844 AGATTCATCATTCTTTATCTCCTACAC
326 AGATTCATCATTCTTTATCTCCTACAC
* * * *
28952871 TACTGGTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGAT
1 TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTGGGAAGACAAGAT
* * *
28952936 TCACCATCTTCGATCTGCTCCACTACTGCTTATAGTGACAGAATCTGCAATCATCAACCTATTCC
66 TCACCATATTCGATCTGCTCCACTACTGCTTACAGTGACAGAATCTGCAATCATCAACCTACTCC
* * * *
28953001 AGTACTGCTTACGGTGATAGGACTAATGGCTTAAATGTGCTTCTCCACTGTATTGGGAAGATAGG
131 ACTACTGCTTACGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTGGGAAGATAAG
* *
28953066 ATTCACCATCGTCGATCTGCTCCACAACTGCTTAGGGAGACAGAATCTGCAATCTTTAACCTACT
196 ATTCACCATCGTCGATCTGCTCCACAACTGCTTACGGAGACAGAATCTGCAATCTTTAACCTACA
*
28953131 CCACTACTGCTTTAGGTGATAGGACTAATGGCTTAAATCCGCTTCTCCACTGTATTGGGAAAATA
261 CCACTACTGCTTTAGGTGATAGGACTAATAGCTTAAATCCGCTTCTCCACTGTATTGGGAAAATA
28953196 AGATTCATCAT
326 AGATTCATCAT
28953207 ATTCGATCTG
Statistics
Matches: 310, Mismatches: 26, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
352 310 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (352 bp):
TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTGGGAAGACAAGAT
TCACCATATTCGATCTGCTCCACTACTGCTTACAGTGACAGAATCTGCAATCATCAACCTACTCC
ACTACTGCTTACGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTGGGAAGATAAG
ATTCACCATCGTCGATCTGCTCCACAACTGCTTACGGAGACAGAATCTGCAATCTTTAACCTACA
CCACTACTGCTTTAGGTGATAGGACTAATAGCTTAAATCCGCTTCTCCACTGTATTGGGAAAATA
AGATTCATCATTCTTTATCTCCTACAC
Found at i:28953028 original size:132 final size:132
Alignment explanation
Indices: 28952868--28954376 Score: 2076
Period size: 132 Copynumber: 11.4 Consensus size: 132
28952858 TTATCTCCTA
* *
28952868 CACTACTGGTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAA
1 CACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAA
** * *
28952933 GATTCACCATCTTCGATCTGCTCCACTACTGCTTATAGTGACAGAATCTGCAATCATCAACCTAT
66 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
28952998 TC
131 TC
* * * *
28953000 CAGTACTGCTTACGGTGATAGGACTAATGGCTTAAATGTGCTTCTCCACTGTATTGGGAAGATAG
1 CACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAA
* * * *
28953065 GATTCACCATCGTCGATCTGCTCCACAACTGCTTAGGGAGACAGAATCTGCAATCTTTAACCTAC
66 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
28953130 TC
131 TC
* *
28953132 CACTACTGCTTTA-GGTGATAGGACTAATGGCTTAAATCCGCTTCTCCACTGTATTGGGAAAATA
1 CACTACTGC-TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATA
* * * *
28953196 AGATTCATCATATTCGATCTGCTTCC-CTACTGTTTAGGGTGACAGAATCTGCAATCTTTAACCT
65 AGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
*
28953260 ATTC
129 ACTC
* * *
28953264 CACTACTGCTTTGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAAATAA
1 CACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAA
* * * * * *
28953329 GATTCACGATCTTTGATTTACTCCAATACTACTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
66 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
28953394 TC
131 TC
* * * * * *
28953396 CTCTACTGCTTGGGGTGATTGGACTAATGACTGAAATCTGCTTCTCCACTGTATT-AGAAGATAA
1 CACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAA
* * *
28953460 GATTCACCATCTTCGATTTGTTCCACTACTGCTTAGGGTGACAGAATCTGCAATTTTCAACCTAC
66 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
28953525 TC
131 TC
* * * *
28953527 CACTACTGCTTAGGTTGATAGGAGTAATGGCTTAAATCTGCTTCTCCACTGAATTGGGAAAATAA
1 CACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAA
* * * * * *
28953592 GATTCATCATATTCGATCTGCTTCC-CTACTGTTTAGGGTGACAGAATATGTACTCTTCAACCTA
66 GATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
28953656 CTC
130 CTC
* * *
28953659 CTCTA-TGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCGTCTCCACTGTATTGGGAAGATA
1 CACTACT-GCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATA
* * * * * * * *
28953723 AGGTTCATCATATTCGACCTACTCCACTACTGCTTAGGGTGACAAAATCTGCTATC-TCTAACGT
65 AGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTC-AACCT
*
28953787 ACCC
129 ACTC
* * * * * * * *
28953791 CACTACTGCTCAAGGAGATAGGACTAATGGCTTTAATTTACTACTCCACTGTATTGGGAGGATAA
1 CACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAA
* *
28953856 GATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAGCCTAC
66 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
28953921 TC
131 TC
* * * * *
28953923 CGCTACTGCTTTGGGTGATAGGACTAATGGCTTAAATCTGCTTCTACAATATATTGGGAAGATAA
1 CACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAA
* *
28953988 GATTCACCATCTTCGATCAGCTCCACTACTGCTTAGGGTGACAGAATCTGGAATCTTCAACCTAC
66 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
28954053 TC
131 TC
* *
28954055 CACTACTGCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAA
1 CACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAA
* * ** * *
28954120 GATTCATCATATTTAATCTGCTTCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCGAC
66 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
*
28954185 TA
131 TC
* * * *
28954187 TACTACTGCTTAGGGAGATTGGACTAATGGCTTAAATATGCTTCTCCACTGTATTGGGAAGATAA
1 CACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAA
* *
28954252 GAATCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
66 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
28954317 TC
131 TC
* *
28954319 CACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGG
1 CACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGG
28954377 NNNNNNNNNN
Statistics
Matches: 1204, Mismatches: 162, Indels: 22
0.87 0.12 0.02
Matches are distributed among these distances:
131 125 0.10
132 1067 0.89
133 12 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (132 bp):
CACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAA
GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
TC
Found at i:28953367 original size:484 final size:484
Alignment explanation
Indices: 28952380--28953369 Score: 1524
Period size: 484 Copynumber: 2.0 Consensus size: 484
28952370 TCTTCAACTG
**
28952380 ACTCCACTACTGCTTAGAATGATACGACTAATGGATTAAATCTACTTCTCTACTGTATTGGGAAG
1 ACTCCACTACTGCTTAGGGTGATACGACTAATGGATTAAATCTACTTCTCTACTGTATTGGGAAG
* * *
28952445 ATAAGATTCAGCATCTTCGATCTGCTCCACTACTGCTTAGAGTGACAGAATCTGTAATCTTCAAC
66 ATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGAGTGACAGAATCTGCAATCATCAAC
*
28952510 CTACTCCAGTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTGGGA
131 CTACTCCAGTACTGCTTACGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTGGGA
* * * *
28952575 AGACAAGATTGACCATATTCGATCTGCTCCACTACTGCTTACGGTGACAGAATCTGCAATCTTCA
196 AGACAAGATTCACCATAGTCGATCTGCTCCACAACTGCTTACGGAGACAGAATCTGCAATCTTCA
*
28952640 ACCTACTCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTGG
261 ACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTGG
* * * *
28952705 GAAGATAAGATTCACTATCTTCGATCTGCTCCACTACTGCTTACGGTGACAGAATTTGTAATCTT
326 GAAAATAAGATTCACTATATTCGATCTGCTCCACTACTGCTTACGGTGACAGAATCTGCAATCTT
*
28952770 TAACCTACACCACTACTGCTTTGGGTGATAGGACTAATAGCTTAAATCCGCTTCTCCACTGTATT
391 TAACCTACACCACTACTGCTTTGGGTGATAGGACTAATAGCTTAAATCCGCTTCTCCACTATATT
28952835 GGGAAAATAAGATTCATCATTCTTTATCT
456 GGGAAAATAAGATTCATCATTCTTTATCT
* * * * * *
28952864 CCTACACTACTGGTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAG
1 ACTCCACTACTGCTTAGGGTGATACGACTAATGGATTAAATCTACTTCTCTACTGTATTGGGAAG
*
28952929 ATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTATAGTGACAGAATCTGCAATCATCAAC
66 ATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGAGTGACAGAATCTGCAATCATCAAC
* * *
28952994 CTATTCCAGTACTGCTTACGGTGATAGGACTAATGGCTTAAATGTGCTTCTCCACTGTATTGGGA
131 CTACTCCAGTACTGCTTACGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTGGGA
* * * * *
28953059 AGATAGGATTCACCATCGTCGATCTGCTCCACAACTGCTTAGGGAGACAGAATCTGCAATCTTTA
196 AGACAAGATTCACCATAGTCGATCTGCTCCACAACTGCTTACGGAGACAGAATCTGCAATCTTCA
28953124 ACCTACTCCACTACTGCTTTA-GGTGATAGGACTAATGGCTTAAATC-CGCTTCTCCACTGTATT
261 ACCTACTCCACTACTGC-TTAGGGTGATAGGACTAATGGCTTAAATCTC-CTTCTCCACTGTATT
* *
28953187 GGGAAAATAAGATTCA-TCATATTCGATCTGCTTCC-CTACTGTTTAGGGTGACAGAATCTGCAA
324 GGGAAAATAAGATTCACT-ATATTCGATCTGC-TCCACTACTGCTTACGGTGACAGAATCTGCAA
** * *
28953250 TCTTTAACCTATTCCACTACTGCTTTGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTA
387 TCTTTAACCTACACCACTACTGCTTTGGGTGATAGGACTAATAGCTTAAATCCGCTTCTCCACTA
*
28953315 TATTGGGAAAATAAGATTCA-CGA-TCTTTGATTT
452 TATTGGGAAAATAAGATTCATC-ATTCTTT-ATCT
* *
28953348 ACTCCAATACTACTTAGGGTGA
1 ACTCCACTACTGCTTAGGGTGA
28953370 CAGAATCTGC
Statistics
Matches: 457, Mismatches: 43, Indels: 12
0.89 0.08 0.02
Matches are distributed among these distances:
483 8 0.02
484 443 0.97
485 6 0.01
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (484 bp):
ACTCCACTACTGCTTAGGGTGATACGACTAATGGATTAAATCTACTTCTCTACTGTATTGGGAAG
ATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGAGTGACAGAATCTGCAATCATCAAC
CTACTCCAGTACTGCTTACGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTGGGA
AGACAAGATTCACCATAGTCGATCTGCTCCACAACTGCTTACGGAGACAGAATCTGCAATCTTCA
ACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTCCTTCTCCACTGTATTGG
GAAAATAAGATTCACTATATTCGATCTGCTCCACTACTGCTTACGGTGACAGAATCTGCAATCTT
TAACCTACACCACTACTGCTTTGGGTGATAGGACTAATAGCTTAAATCCGCTTCTCCACTATATT
GGGAAAATAAGATTCATCATTCTTTATCT
Found at i:28954743 original size:132 final size:130
Alignment explanation
Indices: 28954505--28954941 Score: 464
Period size: 132 Copynumber: 3.3 Consensus size: 130
28954495 NNNNNNNNNN
* * * * *
28954505 TGGGAAAATAAGATTCACCATCTTCGATCTATTCCAAC-ACTGCTTAGGGTGACAGAATCTACAA
1 TGGGAAAATAAGATTCACAATC-TCAATCTACTCC-ACTACTACTTAGGGTGACAGAATCTGCAA
* * * *
28954569 TCTTCAACCGACTCCACTACAGATTAGGTTGAGAGGACTAATGGCTTATATTTGCTTCTCCACTG
64 TCTTCAACCGACTCCACTACTGTTTAGG-TGATAGGACTAATGGCTTAAATTTGCTTCTCCACTG
28954634 TAT
128 TAT
* * * * *
28954637 TGGGAAGATAGGATTCACAATCGTCGATCTGCTCCACTACTACTTAGGGTGGCAGAATCTGCAAT
1 TGGGAAAATAAGATTCACAATC-TCAATCTACTCCACTACTACTTAGGGTGACAGAATCTGCAAT
* * ** * * **
28954702 CTTTAACCTACTCCACTACTGTTTTTTGTGATAGGATTAATGACTTAAATTTGAATCTCCACTGT
65 CTTCAACCGACTCCACTACTG-TTTAGGTGATAGGACTAATGGCTTAAATTTGCTTCTCCACTGT
28954767 AT
129 AT
* * * * *
28954769 TGGGAAAATAAGATTCATCATAT-TTAATCTGCTTCACTACTTCTTAGGGTGACAGAATCTGGAA
1 TGGGAAAATAAGATTCA-CA-ATCTCAATCTACTCCACTACTACTTAGGGTGACAGAATCTGCAA
* * * * * *
28954833 TCTTCAACCGACTCCACTACTGCTTAGGGAGATTGGGCTAATGGCTTAAATATGCTTCTCTACTG
64 TCTTCAACCGACTCCACTACTGTTTA-GGTGATAGGACTAATGGCTTAAATTTGCTTCTCCACTG
28954898 TAT
128 TAT
* *
28954901 TGGGAAAATGAGATTCACTATCTCCAATCTACTCCACTACT
1 TGGGAAAATAAGATTCACAATCT-CAATCTACTCCACTACT
28954942 GCTTNNNNNN
Statistics
Matches: 250, Mismatches: 48, Indels: 14
0.80 0.15 0.04
Matches are distributed among these distances:
130 2 0.01
131 6 0.02
132 235 0.94
133 5 0.02
134 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (130 bp):
TGGGAAAATAAGATTCACAATCTCAATCTACTCCACTACTACTTAGGGTGACAGAATCTGCAATC
TTCAACCGACTCCACTACTGTTTAGGTGATAGGACTAATGGCTTAAATTTGCTTCTCCACTGTAT
Found at i:28955303 original size:132 final size:132
Alignment explanation
Indices: 28955046--28956270 Score: 1562
Period size: 132 Copynumber: 9.3 Consensus size: 132
28955036 NNNNNNNNNN
* * * * * *
28955046 GGGTGACAGAATCTGTAATATTTAACCTACACCACTACTGCTTACGGTGATAT-GACTAATAGCT
1 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGAT-TGGACTAATGGCT
* * * * * * *
28955110 TAAATATGCTTCTACAATATATTGGGAAGATAGGATTCACCATCGTCGATCTACTCCACTACTGC
65 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
28955175 TTA
130 TTA
* * * * *
28955178 GGGTGACAAAATCTGCAATCTTTAACCTACTCCGCTACTGCTTTGGGTGATAGGACTAATGGCTT
1 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATTGGACTAATGGCTT
* * * * * * ** **
28955243 AAGTCTGCCTCTCAACTGTATTGGGAAAATAAGATTCATCATATTTAATCTGCTTTACTACTGCT
66 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
28955308 TA
131 TA
* ** * *
28955310 GGGTGACAGAATCTGCAATCTTCAACCGACTATACTACTGCTTAGGGAGATTGGACTGATGGCTT
1 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATTGGACTAATGGCTT
*
28955375 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCT
66 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
28955440 TA
131 TA
* *
28955442 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTT
1 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATTGGACTAATGGCTT
* * * * * *
28955507 AAATCTACTTCTCCACTGTATTGGGAA-AGTCAGATTCATCATATTCGATCTGCTTCACTACTGT
66 AAATCTGCTTCTCCACTGTATTGGGAAGA-TAAGATTCACCATCTTCGATCTGCTCCACTACTGC
28955571 TTA
130 TTA
* * * * * *
28955574 CGGTGACAGAATCTACAATCTTCAACCAATTCCACT-CTGGCTTAGGGAGATTGGACAAATGGCT
1 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTGATTGGACTAATGGCT
* * * ** *
28955638 TAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCATCATATTTAATCTGCTTCACTACTGC
65 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
28955703 TTA
130 TTA
* * * *
28955706 GGGTGACAGAATCTACAATCTTCAACCAACTCCACTACTTCTTAGGGAGATTGGACTAATGGCTT
1 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATTGGACTAATGGCTT
* * * * *
28955771 AAATCTGCTTCTCCACTGTATTTGAAAGGT-AGATTCAGCATCTTCGATCTACTCCACTACTGCT
66 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
28955835 TA
131 TA
* * * * *
28955837 GAGTGACAGAATCTGTAATCTTCAATCTACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTG
1 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATTGGACTAATGGCTT
* * * * * * *
28955902 AAATCTGCTTCTCCACTCTCTTGAGAAGATAAGAATCACCATCTTCGATCCGCTCTACTACAGCT
66 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
28955967 TA
131 TA
* **
28955969 GGGTGACAGAATCTGCAATCTTTAACCTACTCCACTACTGCTTAGGGTGATAAGACTAATGGCTT
1 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATTGGACTAATGGCTT
* * * *
28956034 AAATCTGCTTCTCCACTAT-TTGGGAAGATAAGATTCACCATCTTTGATTTGCAT-CACTACTGG
66 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGC
28956097 TTA
130 TTA
*
28956100 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAAGGTGATTGGACTAATGGCTT
1 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATTGGACTAATGGCTT
* * *
28956165 AAATTTGCTTCTCCACTGTATTGGGAAGATAAGATTCACTATCTTCGATCTACTCCACTACTGCT
66 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
28956230 TA
131 TA
* * * *
28956232 GCGTGACCGAATCTGCAATCTTTAACCTACACCACTACT
1 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT
28956271 CCNNNNNNNN
Statistics
Matches: 945, Mismatches: 139, Indels: 18
0.86 0.13 0.02
Matches are distributed among these distances:
131 231 0.24
132 711 0.75
133 3 0.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (132 bp):
GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATTGGACTAATGGCTT
AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
TA
Found at i:28956617 original size:132 final size:131
Alignment explanation
Indices: 28956375--28957204 Score: 1198
Period size: 132 Copynumber: 6.3 Consensus size: 131
28956365 NNNNNNNNAG
* * *
28956375 GGTGATATGACTAATGGCTTAAATCTGCTTCTCCACTTTATTGGGGAGATAAGATTCACCATCTT
1 GGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTT
* * *
28956440 CGATCTGCAT-CACTACTGGTTAGGGTGACAGAATCTACAATCTTCAACCGACTCCACTACTGCT
66 CGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT
28956504 TA
130 TA
*
28956506 GGATGATAGGAGTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
1 GG-TGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
* * * *
28956571 TCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCTCCAAGCTTCAACCTACTCCAGTACTGCT
65 TCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT
28956636 TAA
130 T-A
* * * *
28956639 GGTGA-ATGGACTAATGGCTTAAATCTGTTTCTCCACTATATTGGGAAGATAAGATTCATCATAT
1 GGTGATA-GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
* * *
28956703 TCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGAAATCTTCAACCTACTCCAGTACTGCT
65 TCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT
28956768 TAA
130 T-A
* * * *
28956771 CGTGA-ATGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAGAAGATTCATCATAT
1 GGTGATA-GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
* * * * *
28956835 TCGATCTACTCAACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCCACTCCACTACTGCT
65 TCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT
28956900 TA
130 TA
* * *
28956902 GGGTGATAGGACTAATGGCTTAAACCTGCTTCTCCACTGTATTAGGAAGATAAGATTAACCATCT
1 -GGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
* * *
28956967 TCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTGAACCGACTCCACTACTGCT
65 TCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT
28957032 TA
130 TA
* *
28957034 GGGTGATAGGACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTCACCGTCT
1 -GGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
* * *
28957099 TTGATCTACTACACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT
65 TCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT
28957164 TA
130 TA
*
28957166 GGATGATAGGACTAATGACTTAAATTCTGCTTCTCCACT
1 GG-TGATAGGACTAATGGCTTAAA-TCTGCTTCTCCACT
28957205 NNNNNNNNNN
Statistics
Matches: 635, Mismatches: 56, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
131 7 0.01
132 611 0.96
133 17 0.03
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (131 bp):
GGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTT
CGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT
A
Found at i:28958258 original size:132 final size:131
Alignment explanation
Indices: 28957786--28958261 Score: 616
Period size: 132 Copynumber: 3.6 Consensus size: 131
28957776 NNNNNNNNNN
* *
28957786 GTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTA-GGTAGATTGGACTAATGGCTTA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT-GATAGGACTAATGGCTTA
*
28957850 CATCTG-CTGCTCCACTATTATGAGAAGATATGATTCACCATCTTCGATCCGCTCCACTACTGCT
65 AATCTGCCT-CTCCACTATT-TGAGAAGATATGATTCACCATCTTCGATCCGCTCCACTACTGCT
28957914 TAGG
128 TAGG
* * * *
28957918 GCGATAGAATCTGCAATCTTCAACCCACTCCACTACTGCTTAGGGTGATATGACTAATGGCTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* * * * * * **
28957983 ATCTGTCTTTCTACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTA
66 ATCTGCCTCTCCACTAT-TTGAGAAGATATGATTCACCATCTTCGATCCGCTCCACTACTGCTTA
28958048 GG
130 GG
** * * * *
28958050 GTGACAGAATCTGCAATCCACAACCTACTCCACTACTGCTTTGGGAGATTGGACTAATGGCTTAC
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* * * * *
28958115 ATCTACTTCTCCACAATCTTGAGAAGATATGATTCACCATCTTCGACCCGCTGCACTACCT-CTT
66 ATCTGCCTCTCCACTAT-TTGAGAAGATATGATTCACCATCTTCGATCCGCTCCACTA-CTGCTT
28958179 AGG
129 AGG
* *
28958182 GTGACAGAATCTGCAATGTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
*
28958247 ATATGCCTCTCCACT
66 ATCTGCCTCTCCACT
28958262 TAAATATGCC
Statistics
Matches: 290, Mismatches: 50, Indels: 8
0.83 0.14 0.02
Matches are distributed among these distances:
132 282 0.97
133 8 0.03
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (131 bp):
GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
ATCTGCCTCTCCACTATTTGAGAAGATATGATTCACCATCTTCGATCCGCTCCACTACTGCTTAG
G
Found at i:28958264 original size:18 final size:18
Alignment explanation
Indices: 28958241--28958279 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
28958231 AGGACTAATG
28958241 ACTTAAATATGCCTCTCC
1 ACTTAAATATGCCTCTCC
28958259 ACTTAAATATGCCTCTCC
1 ACTTAAATATGCCTCTCC
28958277 ACT
1 ACT
28958280 ACTTTTAGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.33, G:0.05, T:0.33
Consensus pattern (18 bp):
ACTTAAATATGCCTCTCC
Found at i:28958541 original size:132 final size:132
Alignment explanation
Indices: 28958303--28958940 Score: 965
Period size: 132 Copynumber: 4.8 Consensus size: 132
28958293 CAGAATCTGC
* * *
28958303 AATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTT
1 AATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTT
* * * * *
28958368 AGGGAGACAAAATCTGCAATCTTTAACCTACTCCACTACTGCTGAGGGTGATAGGACTAATGGCT
66 AGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCT
28958433 TA
131 TA
* * * *
28958435 AATCTGCTTCTCCTCTGTATTAGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTACTT
1 AATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTT
* * * **
28958500 AAGGTGACAGAATCTGCAATCTTCAGCCTACTCCACCACTGCTTAGGATGATAGGACTAATTTCT
66 AGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCT
28958565 TA
131 TA
* * * * * *
28958567 GATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGCTTCACTACTGTTT
1 AATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTT
* **
28958632 AGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACGGCTTAGGGA-GATAGGACTAATTAC
66 AGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA-GGATGATAGGACTAATGGC
28958696 TTA
130 TTA
28958699 AATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTT
1 AATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTT
* *
28958764 AGGGTGACAGAATCTGCAATCTTCAACCTCCTCCACTACTGCTTAGGATGATTGGACTAATGGCT
66 AGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCT
28958829 TA
131 TA
* * *
28958831 AATCTGCTTCTCCACTGTATTGGGAAGATAAGAATCACCATCTTTGATTTGCAT-CACTACTGCT
1 AATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCT
28958895 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
65 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
28958941 AGGNNNNNNN
Statistics
Matches: 456, Mismatches: 47, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
131 3 0.01
132 449 0.98
133 4 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (132 bp):
AATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTT
AGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCT
TA
Found at i:28958582 original size:321 final size:321
Alignment explanation
Indices: 28957982--28958560 Score: 840
Period size: 321 Copynumber: 1.8 Consensus size: 321
28957972 TAATGGCTTA
* *
28957982 AATCTGTCTTTCTACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTT
1 AATCTGTCTTTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTACTCCACTACTGCTT
* * ** *
28958047 AGGGTGACAGAATCTGCAATCCACAACCTACTCCACTACTGCTTTGGGAGATTGGACTAATGGCT
66 AGGGAGACAAAATCTGCAATCCACAACCTACTCCACTACTGCTGAGGGAGATAGGACTAATGGCT
* * * * *
28958112 TACATCTACTTCTCCACAATCTTGAGAAGATATGATTCACCATCTTCGACCCGCTGCACTACCTC
131 TAAATCTACTTCTCCACAATATTGAGAAGATAAGATTCACCATCTTCGACCCACTCCACTACCTC
* * * *
28958177 TTAGGGTGACAGAATCTGCAATGTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGA
196 TTAAGGTGACAGAATCTGCAATCTTCAACCTACTCCACCACTGCTTAGGATGATAGGACTAATGA
28958242 CTTAAATATGCCTCTCCACTTAAATATGCCTCTCCACTACTTTTAGGGTGACAGAATCTGC
261 CTTAAATATGCCTCTCCACTTAAATATGCCTCTCCACTACTTTTAGGGTGACAGAATCTGC
* * *
28958303 AATCTG-CTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTT
1 AATCTGTCTT-TCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTACTCCACTACTGCT
*** *
28958367 TAGGGAGACAAAATCTGCAATCTTTAACCTACTCCACTACTGCTGAGGGTGATAGGACTAATGGC
65 TAGGGAGACAAAATCTGCAATCCACAACCTACTCCACTACTGCTGAGGGAGATAGGACTAATGGC
* * ** * *
28958432 TTAAATCTGCTTCTCCTCTGTATT-AGGAAGATAAGATTCACCATCTTCGATCTACTCCACTA-C
130 TTAAATCTACTTCTCCACAATATTGA-GAAGATAAGATTCACCATCTTCGACCCACTCCACTACC
*
28958495 TACTTAAGGTGACAGAATCTGCAATCTTCAGCCTACTCCACCACTGCTTAGGATGATAGGACTAA
194 T-CTTAAGGTGACAGAATCTGCAATCTTCAACCTACTCCACCACTGCTTAGGATGATAGGACTAA
28958560 T
258 T
28958561 TTCTTAGATC
Statistics
Matches: 225, Mismatches: 30, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
320 6 0.03
321 219 0.97
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.30
Consensus pattern (321 bp):
AATCTGTCTTTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTACTCCACTACTGCTT
AGGGAGACAAAATCTGCAATCCACAACCTACTCCACTACTGCTGAGGGAGATAGGACTAATGGCT
TAAATCTACTTCTCCACAATATTGAGAAGATAAGATTCACCATCTTCGACCCACTCCACTACCTC
TTAAGGTGACAGAATCTGCAATCTTCAACCTACTCCACCACTGCTTAGGATGATAGGACTAATGA
CTTAAATATGCCTCTCCACTTAAATATGCCTCTCCACTACTTTTAGGGTGACAGAATCTGC
Found at i:28958700 original size:453 final size:453
Alignment explanation
Indices: 28957851--28958714 Score: 1234
Period size: 453 Copynumber: 1.9 Consensus size: 453
28957841 AATGGCTTAC
* *
28957851 ATCTGCTGCTCCACTATTATGAGAAGATATGATTCACCATCTTCGATCCGCTCCACTACTGCTTA
1 ATCTGCTGCTCCACTATTATGAGAAGATAAGATTCACCATATTCGATCCGCTCCACTACTGCTTA
* * * * *
28957916 GGGCGATAGAATCTGCAATCTTCAACCCACTCCACTACTGCTTAGGGTGATATGACTAATGGCTT
66 GGGAGACAAAATCTGCAATCTTCAACCCACTCCACTACTGCTGAGGGTGATAGGACTAATGGCTT
* *
28957981 AAATCTGTCTTTCTACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCT
131 AAATCTGTCTTTCTACTGTATTAGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTACT
* * * *
28958046 TAGGGTGACAGAATCTGCAATCCACAACCTACTCCACTACTGCTTTGGGAGATTGGACTAATGGC
196 TAAGGTGACAGAATCTGCAATCCACAACCTACTCCACCACTGCTTTAGGAGATAGGACTAATGGC
* * * *
28958111 TTACATCTACTTCTCCACAATCTTGAGAAGATATGATTCACCATCTTCGACCCGCTGCACTACCT
261 TTACATCTACTTCTCCACAATATTGAGAAAATAAGATTCACCATATTCGACCCGCTGCACTACCT
* * *
28958176 CTTAGGGTGACAGAATCTGCAATGTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
326 CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACGGCTTAGGGAGATAGGACTAATG
28958241 ACTTAAATATGCCTCTCCACTTAAATATGCCTCTCCACTACTTTTAGGGTGACAGAATCTGCA
391 ACTTAAATATGCCTCTCCACTTAAATATGCCTCTCCACTACTTTTAGGGTGACAGAATCTGCA
* * * * * *
28958304 ATCTGCTTCTCCACT-GTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTT
1 ATCTGCTGCTCCACTATTA-TGAGAAGATAAGATTCACCATATTCGATCCGCTCCACTACTGCTT
* *
28958368 AGGGAGACAAAATCTGCAATCTTTAACCTACTCCACTACTGCTGAGGGTGATAGGACTAATGGCT
65 AGGGAGACAAAATCTGCAATCTTCAACCCACTCCACTACTGCTGAGGGTGATAGGACTAATGGCT
28958433 TAAATCTG-CTTCTCCT-CTGTATTAGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACT
130 TAAATCTGTCTT-T-CTACTGTATTAGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACT
** *
28958496 ACTTAAGGTGACAGAATCTGCAATCTTCAGCCTACTCCACCACTGC-TTAGGATGATAGGACTAA
193 ACTTAAGGTGACAGAATCTGCAATCCACAACCTACTCCACCACTGCTTTAGGA-GATAGGACTAA
** * * ** * * * * *
28958560 TTTCTTAGATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGCTTCACT
257 TGGCTTACATCTACTTCTCCACAATATTGAGAAAATAAGATTCACCATATTCGACCCGCTGCACT
*
28958625 A-CTGTTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACGGCTTAGGGAGATAGGAC
322 ACCT-CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACGGCTTAGGGAGATAGGAC
* * *
28958689 TAATTACTTAAATCTGCTTCTCCACT
386 TAATGACTTAAATATGCCTCTCCACT
28958715 GTATTGGGAA
Statistics
Matches: 360, Mismatches: 46, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
452 12 0.03
453 346 0.96
454 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (453 bp):
ATCTGCTGCTCCACTATTATGAGAAGATAAGATTCACCATATTCGATCCGCTCCACTACTGCTTA
GGGAGACAAAATCTGCAATCTTCAACCCACTCCACTACTGCTGAGGGTGATAGGACTAATGGCTT
AAATCTGTCTTTCTACTGTATTAGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTACT
TAAGGTGACAGAATCTGCAATCCACAACCTACTCCACCACTGCTTTAGGAGATAGGACTAATGGC
TTACATCTACTTCTCCACAATATTGAGAAAATAAGATTCACCATATTCGACCCGCTGCACTACCT
CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACGGCTTAGGGAGATAGGACTAATG
ACTTAAATATGCCTCTCCACTTAAATATGCCTCTCCACTACTTTTAGGGTGACAGAATCTGCA
Found at i:28959287 original size:132 final size:132
Alignment explanation
Indices: 28959050--28959385 Score: 467
Period size: 132 Copynumber: 2.5 Consensus size: 132
28959040 NNNNNNNNNN
* * * * * *
28959050 TCAACCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCACCACTGTTT
1 TCAACCAACTCCACTACTGCGTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTAT
* * * * * *
28959115 TGGGAAAATAAGATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGACAGAATCTGCAAT
66 TGGGAAAATAAGATTCATAATATTCGACCTACTCCACTACTGCTTAGGGTGACAAAATCTGCAAT
28959180 CT
131 CT
28959182 TCAACCAACTCCACTA-TGGCGTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA
1 TCAACCAACTCCACTACT-GCGTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTA
* * *
28959246 TTGGGAAGATAAGGTTCATAATATTCGACCTACTCCACTACTGCTTAGGGTGACAAAATCTGCTA
65 TTGGGAAAATAAGATTCATAATATTCGACCTACTCCACTACTGCTTAGGGTGACAAAATCTGCAA
28959311 TCT
130 TCT
* * * * * *
28959314 TTAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTTAATCTACTACTCCACTGTAT
1 TCAACCAACTCCACTACTGCGTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTAT
28959379 TGGGAAA
66 TGGGAAA
28959386 NNNNNNNNNN
Statistics
Matches: 180, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
131 1 0.01
132 178 0.99
133 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (132 bp):
TCAACCAACTCCACTACTGCGTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTAT
TGGGAAAATAAGATTCATAATATTCGACCTACTCCACTACTGCTTAGGGTGACAAAATCTGCAAT
CT
Found at i:28959856 original size:132 final size:131
Alignment explanation
Indices: 28959619--28959991 Score: 514
Period size: 132 Copynumber: 2.8 Consensus size: 131
28959609 NNNNNNNNNN
* * * * *
28959619 CTTAAATCTGCTTGTCCACTATATTAGGAAAATAAGATTCATCATATTCGATCTGCTTCACTACT
1 CTTAAATCTGCTTCTCCACTGTATT-GGAAAATAAGATTCACCATATTCGATCTACTCCACTACT
* * * * *
28959684 GTTTAGGGTGACAGAATCTGTAATCTTCAACCAATTCCACTA-TGGCTTAGGGAGATAGGACTAA
65 GCTTAGGGTGACAGAATCTGCAATCTTCAACCAACTCCACTACT-GCCTAAGGAGATAGGACTAA
28959748 TGG
129 TGG
* * *
28959751 CTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATCTTCGATTTACTCCAATACT
1 CTTAAATCTGCTTCTCCACTGTATT-GGAAAATAAGATTCACCATATTCGATCTACTCCACTACT
* * *
28959816 GCATAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCCTAAGGAGATTGGACTAAT
65 GCTTAGGGTGACAGAATCTGCAATCTTCAACCAACTCCACTACTGCCTAAGGAGATAGGACTAAT
28959881 GG
130 GG
* *
28959883 CTTAAATCTGCTTCTCCACTGTATTCGAAAGATAAGATTCACCATTTTCGATCTACTCCACTACT
1 CTTAAATCTGCTTCTCCACTGTATTGGAAA-ATAAGATTCACCATATTCGATCTACTCCACTACT
* * *
28959948 GGTTAGGATGACAGAATCTGCAATCTTCAACCTACTCCACTACT
65 GCTTAGGGTGACAGAATCTGCAATCTTCAACCAACTCCACTACT
28959992 ACTTAGGGTG
Statistics
Matches: 214, Mismatches: 25, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
131 4 0.02
132 209 0.98
133 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (131 bp):
CTTAAATCTGCTTCTCCACTGTATTGGAAAATAAGATTCACCATATTCGATCTACTCCACTACTG
CTTAGGGTGACAGAATCTGCAATCTTCAACCAACTCCACTACTGCCTAAGGAGATAGGACTAATG
G
Found at i:28961175 original size:132 final size:132
Alignment explanation
Indices: 28960944--28961816 Score: 1241
Period size: 132 Copynumber: 6.6 Consensus size: 132
28960934 ATTATCTTGA
* * * **
28960944 GAAGATAAGAATCACCATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTAAAATCTT
1 GAAGATAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
* *
28961009 CAACCTACTCCACTACTACTTAGGCTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT
66 CAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT
28961074 GG
131 GG
* * * * *
28961076 GAAAATAAGATTCACCATCTTCGATCTACTCCAATACTGCATAGGGTGACAGAATCTGCAATCTT
1 GAAGATAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
* * * *
28961141 CAACCGACAT-CACTACTGCTGAGGGAGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTAT
66 CAACCTAC-TCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTAT
*
28961205 TTG
130 TGG
* * *
28961208 GAAGATAAGATTCACAATTTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
1 GAAGATAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
* *
28961273 CAACCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTATT
66 CAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT
28961338 GG
131 GG
* * * * *
28961340 GAAGATAAGATTCATCATATTCGATCTGCTTCACTACTGTTTAGGGTGATAGAATCTGTAATCTT
1 GAAGATAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
* * * *
28961405 TAACCTACTCCACTACTGTTTAGGGTGACAGGACTAATGGCTTAAATTTGCTTCTCCACTGTATT
66 CAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT
28961470 GG
131 GG
* * * *
28961472 GAAGATAAGATTCACCATCTTCGATTTGCTTCACTACTCCTTAGGGTGACAGAATCTGCAATCTT
1 GAAGATAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
* * *
28961537 CAACCTACTCCAGTACTGCTTAAGGTGA-ATGAACTAATGGCTTAAATCTG-TGTCTCCACTGTA
66 CAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTAAATCTGCT-TCTCCACTGTA
28961600 TTGG
129 TTGG
* * * *
28961604 GAAAATAAGATTCATCATATTCGATCCGCTCCACTACTGTTTAGGGTGACAGAATCTGCAATCTT
1 GAAGATAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
* * *
28961669 CAACCTACTCCACTACTGCTTAAGGTGA-ATGGACTAATGGGTTAAATCTGTTTCTCCACTGTAT
66 CAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTAAATCTGCTTCTCCACTGTAT
28961733 TGG
130 TGG
* * * *
28961736 GAAGATAAGATTTATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTT
1 GAAGATAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
28961801 CAACCTACTCCACTAC
66 CAACCTACTCCACTAC
28961817 NNNNNNNNNN
Statistics
Matches: 668, Mismatches: 68, Indels: 10
0.90 0.09 0.01
Matches are distributed among these distances:
131 3 0.00
132 663 0.99
133 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (132 bp):
GAAGATAAGATTCACCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
CAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT
GG
Found at i:28962154 original size:132 final size:131
Alignment explanation
Indices: 28961917--28962762 Score: 992
Period size: 132 Copynumber: 6.4 Consensus size: 131
28961907 NNNNNNNNNN
* * * * * *
28961917 CTGTATTAGGAAGATAAGATTAACCATCTTCGATCTGCTCCACTTCTACTTAGGGTGATAGAATC
1 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATC
* * * * * * *
28961982 TGTAAGCTTGAACCGACTCCACTACTTCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTC
66 TGCAATCTTCAACCTACTCCACTACTGCTTA-GGAGATAGGACTAATGGCTTAAATCTGCTTCTC
28962047 CA
130 CA
* * * *
28962049 CTGTATTGGAAAGATATGACTCACCATCTTCGATCTATTCCACTACTGCTTAGGGTGACAGAATC
1 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATC
* * * *
28962114 TGCAATCTTCGACCTACTCCACCACTGCTTAGGATGATAGGACTAATTGCTTAAATCTGCTTCCC
66 TGCAATCTTCAACCTACTCCACTACTGCTTAGGA-GATAGGACTAATGGCTTAAATCTGCTTCTC
28962179 CA
130 CA
* * * * * *
28962181 CTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTTCGCTACTGTTTAGGGTGACAGAATC
1 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATC
* * * *
28962246 TGCAATCTTCAACCAACTCCACTA-TGGCTTAAGGAGATAAGACTATTGGCTTAAATTTGCTTCT
66 TGCAATCTTCAACCTACTCCACTACT-GCTT-AGGAGATAGGACTAATGGCTTAAATCTGCTTCT
28962310 CCA
129 CCA
* * * * * * *
28962313 TTGTATTGGGAAGATAAGATTCATCATATTCGATCTACTCAACTACTGTTTAAGGTGACAAAATC
1 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATC
* * * * **
28962378 TGTAATCTTGAACCTACTCCACTACGGCTTTGGGAGATAGGTTTAATGGCTTAAATCTGCTTCTC
66 TGCAATCTTCAACCTACTCCACTACTGC-TTAGGAGATAGGACTAATGGCTTAAATCTGCTTCTC
*
28962443 TA
130 CA
** *
28962445 CTGTAACGGGTAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATC
1 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATC
* * * * * * *
28962510 TGCAATCCTCAACCTACTCCAATACTGCGTAGGGAGATTGGACTAATGGCTTACATTTACTTCTC
66 TGCAATCTTCAACCTACTCCACTACTGCTTA-GGAGATAGGACTAATGGCTTAAATCTGCTTCTC
28962575 CA
130 CA
* * * * ** *
28962577 CTATCTTGAGAAGATATGATTCACCATCTTCGATCCGCTGCACTACTGCTTAGGGTGACAGAATC
1 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATC
* * * *
28962642 TGCAATCTTCAACCTACTCCACTACTGTTTAGGGTGATAGGACTAATGACTTAAAACCTGCTTCT
66 TGCAATCTTCAACCTACTCCACTACTGCTTA-GGAGATAGGACTAATGGCTT-AAATCTGCTTCT
28962707 CCA
129 CCA
* * *
28962710 TTGTATTGGGAAGATAAGATTTACCATCTTCGATCTGCTCCACTACTGCTTAG
1 CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAG
28962763 TATGATAGGA
Statistics
Matches: 597, Mismatches: 110, Indels: 13
0.83 0.15 0.02
Matches are distributed among these distances:
131 4 0.01
132 531 0.89
133 62 0.10
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (131 bp):
CTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATC
TGCAATCTTCAACCTACTCCACTACTGCTTAGGAGATAGGACTAATGGCTTAAATCTGCTTCTCC
A
Found at i:28962663 original size:396 final size:397
Alignment explanation
Indices: 28961918--28962761 Score: 1109
Period size: 396 Copynumber: 2.1 Consensus size: 397
28961908 NNNNNNNNNC
* * * * * *
28961918 TGTATTAGGAAGATAAGATTAACCATCTTCGATCTGCTCCACTTCTACTTAGGGTGATAGAATCT
1 TGTATTGGGAAGATAAGATTAACCATCTTCGATCTGCTCCACTACTGCTTAAGGTGACAAAATCT
** *
28961983 GTAAGCTTGAACCGACTCCACTACTTCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCC
66 GTAAGCTTGAACCGACTCCACTACGGCTTAGGGAGATAGGACTAATGGCTTAAATCTACTTCTCC
** * *
28962048 ACTGTATTGGAAAGATATGACTCACCATCTTCGATCTATTCCACTACTGCTTAGGGTGACAGAAT
131 ACTGTAACGGAAAGATAAGACTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAAT
* * * * * *
28962113 CTGCAATCTTCGACCTACTCCACCACTGCTTAGGATGATAGGACTAATTGCTTAAATCTGCTTCC
196 CTGCAATCCTCAACCTACTCCAACACTGCGTAGGATGATAGGACTAATGGCTTAAATCTACTTCC
* * * * * * *
28962178 CCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTTCGCTACTGTTTAGGGTGACAGA
261 CCACTATATTGAGAAGATAAGATTCACCATATTCGATCCGCTGCACTACTGCTTAGGGTGACAGA
* * **
28962243 ATCTGCAATCTTCAACCAACTCCACTA-TGGCTTAAGGAGATAAGACTATTGGCTT-AAATTTGC
326 ATCTGCAATCTTCAACCAACTCCACTACT-GCTTAAGGAGATAAGACTAATGACTTAAAACCTGC
28962306 TTCTCCAT
390 TTCTCCAT
* * * * * *
28962314 TGTATTGGGAAGATAAGATTCATCATATTCGATCTACTCAACTACTGTTTAAGGTGACAAAATCT
1 TGTATTGGGAAGATAAGATTAACCATCTTCGATCTGCTCCACTACTGCTTAAGGTGACAAAATCT
* * * ** * *
28962379 GTAATCTTGAACCTACTCCACTACGGCTTTGGGAGATAGGTTTAATGGCTTAAATCTGCTTCTCT
66 GTAAGCTTGAACCGACTCCACTACGGCTTAGGGAGATAGGACTAATGGCTTAAATCTACTTCTCC
** *
28962444 ACTGTAACGGGTAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAAT
131 ACTGTAACGGAAAGATAAGACTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAAT
* * * *
28962509 CTGCAATCCTCAACCTACTCCAATACTGCGTAGGGA-GATTGGACTAATGGCTTACATTTACTTC
196 CTGCAATCCTCAACCTACTCCAACACTGCGTA-GGATGATAGGACTAATGGCTTAAATCTACTTC
* * * *
28962573 TCCACTATCTTGAGAAGATATGATTCACCATCTTCGATCCGCTGCACTACTGCTTAGGGTGACAG
260 CCCACTATATTGAGAAGATAAGATTCACCATATTCGATCCGCTGCACTACTGCTTAGGGTGACAG
* * * * *
28962638 AATCTGCAATCTTCAACCTACTCCACTACTGTTTAGGGTGATAGGACTAATGACTTAAAACCTGC
325 AATCTGCAATCTTCAACCAACTCCACTACTGCTTAAGGAGATAAGACTAATGACTTAAAACCTGC
28962703 TTCTCCAT
390 TTCTCCAT
*
28962711 TGTATTGGGAAGATAAGATTTACCATCTTCGATCTGCTCCACTACTGCTTA
1 TGTATTGGGAAGATAAGATTAACCATCTTCGATCTGCTCCACTACTGCTTA
28962762 GTATGATAGG
Statistics
Matches: 380, Mismatches: 65, Indels: 5
0.84 0.14 0.01
Matches are distributed among these distances:
396 317 0.83
397 63 0.17
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (397 bp):
TGTATTGGGAAGATAAGATTAACCATCTTCGATCTGCTCCACTACTGCTTAAGGTGACAAAATCT
GTAAGCTTGAACCGACTCCACTACGGCTTAGGGAGATAGGACTAATGGCTTAAATCTACTTCTCC
ACTGTAACGGAAAGATAAGACTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAAT
CTGCAATCCTCAACCTACTCCAACACTGCGTAGGATGATAGGACTAATGGCTTAAATCTACTTCC
CCACTATATTGAGAAGATAAGATTCACCATATTCGATCCGCTGCACTACTGCTTAGGGTGACAGA
ATCTGCAATCTTCAACCAACTCCACTACTGCTTAAGGAGATAAGACTAATGACTTAAAACCTGCT
TCTCCAT
Found at i:28962829 original size:88 final size:88
Alignment explanation
Indices: 28962658--28962845 Score: 263
Period size: 88 Copynumber: 2.1 Consensus size: 88
28962648 CTTCAACCTA
* * * *
28962658 CTCCACTACTGTTTAGGGTGATAGGACTAATGACTTAAAACCTGCTTCTCCATTGTATTGGGAAG
1 CTCCACTACTGCTTAGGATGATAGGACTAATGACTTAAAA-CTGATTCTCCACTGTATTGGGAAG
* *
28962723 ATAAGATTTACCATCTTCGATCTG
65 ATAAGATTCACCATCTTCGATCAG
* *
28962747 CTCCACTACTGCTTAGTATGATAGGACTAATGGCTTAAATA-TGATTCTCCACTGTATTGGGAAG
1 CTCCACTACTGCTTAGGATGATAGGACTAATGACTTAAA-ACTGATTCTCCACTGTATTGGGAAG
28962811 ATAAGATTCACCATCTTCGATCAG
65 ATAAGATTCACCATCTTCGATCAG
28962835 CAT-CACTACTG
1 C-TCCACTACTG
28962846 GTTAAGGTGA
Statistics
Matches: 89, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
88 52 0.58
89 36 0.40
90 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (88 bp):
CTCCACTACTGCTTAGGATGATAGGACTAATGACTTAAAACTGATTCTCCACTGTATTGGGAAGA
TAAGATTCACCATCTTCGATCAG
Found at i:28962857 original size:221 final size:220
Alignment explanation
Indices: 28962549--28962982 Score: 647
Period size: 221 Copynumber: 2.0 Consensus size: 220
28962539 TAGGGAGATT
* * * * *
28962549 GGACTAATGGCTTACATTTACTTCTCCACTATCTTGAGAAGATATGATTCACCATCTTCGATCCG
1 GGACTAATGGCTTAAATTGACTTCTCCACTATATTGAGAAGATAAGATTCACCATCTTCGATCAG
* * * *
28962614 CTGCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGTTTAGGGTGA
66 CTGCACTACTGCTTAAGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGATGA
* * *
28962679 TAGGACTAATGACTTAAAACCTGCTTCTCCATTGTATTGGGAAGATAAGATTTACCATCTTCGAT
131 TAGGACTAATGACTT-AAACCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGAT
*
28962744 CTGCTCCACTACTGCTTAGTATGATA
195 CTGCTCCACTACTCCTTAGTATGATA
* *
28962770 GGACTAATGGCTTAAATATGA-TTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCA
1 GGACTAATGGCTTAAAT-TGACTTCTCCACTATATTGAGAAGATAAGATTCACCATCTTCGATCA
* *
28962834 GCAT-CACTACTGGTTAAGGTGACAGAATCTGCAATCTTCGACCGACTCCACTACTGCTTAGGAT
65 GC-TGCACTACTGCTTAAGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGAT
*
28962898 GATAGGACTAATGACTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGA
129 GATAGGACTAATGACTTAAACCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGA
* *
28962963 TTTGCTTCACTACTCCTTAG
194 TCTGCTCCACTACTCCTTAG
28962983 GGTGACAGAA
Statistics
Matches: 191, Mismatches: 20, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
220 61 0.32
221 127 0.66
222 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (220 bp):
GGACTAATGGCTTAAATTGACTTCTCCACTATATTGAGAAGATAAGATTCACCATCTTCGATCAG
CTGCACTACTGCTTAAGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGATGA
TAGGACTAATGACTTAAACCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATC
TGCTCCACTACTCCTTAGTATGATA
Found at i:28962916 original size:132 final size:131
Alignment explanation
Indices: 28962747--28963461 Score: 947
Period size: 132 Copynumber: 5.4 Consensus size: 131
28962737 CTTCGATCTG
* *
28962747 CTCCACTACTGCTTAGTATGATAGGACTAATGGCTTAAATATGATTCTCCACTGTATTGGGAAGA
1 CTCCACTACTGCTTAG-GTGATAGGACTAATGGCTTAAATCTGATTCTCCACTGTATTGGGAAGA
* * * *
28962812 TAAGATTCACCATCTTCGATCAGCAT-CACTACTGGTTAAGGTGACAGAATCTGCAATCTTCGAC
65 TAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAAC
*
28962876 CGA
129 CTA
* * *
28962879 CTCCACTACTGCTTAGGATGATAGGACTAATGACTTAAATCTGCTTCTCCACTATATTGGGAAGA
1 CTCCACTACTGCTTAGG-TGATAGGACTAATGGCTTAAATCTGATTCTCCACTGTATTGGGAAGA
* * *
28962944 TAAGATTCACCATCTTCGATTTGCTTCACTACTCCTTAGGGTGACAGAATCTGCAATCTTCAACC
65 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
28963009 TA
130 TA
* *
28963011 CTCCAGTACTGCTTAAGGTGA-ATGAACTAATGGCTTAAATCTG-TGTCTCCACTGTATTGGGAA
1 CTCCACTACTGCTT-AGGTGATA-GGACTAATGGCTTAAATCTGAT-TCTCCACTGTATTGGGAA
* * *
28963074 GATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAA
63 GATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAA
28963139 CCTA
128 CCTA
* * *
28963143 CTCCAGTACTGCTTAAGGT-AAATGGACTAATGGCTTAAATCTGTTTCTCCACTGTATTGGGAAG
1 CTCCACTACTGCTT-AGGTGATA-GGACTAATGGCTTAAATCTGATTCTCCACTGTATTGGGAAG
* * * * *
28963207 ATAAGATAT-ATCATATTCGATCTACTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAA
64 ATAAGAT-TCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAA
28963271 CCTA
128 CCTA
* * * * *
28963275 CTCCACTACTATCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCTCTGTATTAGGAAG
1 CTCCACTACT-GCTTA-GGTGATAGGACTAATGGCTTAAATCTGATTCTCCACTGTATTGGGAAG
* * * * *
28963340 ATAAGATTAACCATCTTCGATCTGCTCCACTTCTACTTAGGGTGACAGAATCTGCAAGCTTGAAC
64 ATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAAC
28963405 CTGA
129 CT-A
28963409 CTCCACTACTGCTTAGGTGATAGGACTAATGGCTTAAATCT-ACTTCTCCACTG
1 CTCCACTACTGCTTAGGTGATAGGACTAATGGCTTAAATCTGA-TTCTCCACTG
28963462 NNNNNNNNNN
Statistics
Matches: 524, Mismatches: 45, Indels: 28
0.88 0.08 0.05
Matches are distributed among these distances:
131 4 0.01
132 399 0.76
133 109 0.21
134 12 0.02
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (131 bp):
CTCCACTACTGCTTAGGTGATAGGACTAATGGCTTAAATCTGATTCTCCACTGTATTGGGAAGAT
AAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
A
Found at i:28962953 original size:485 final size:484
Alignment explanation
Indices: 28962281--28963246 Score: 1314
Period size: 485 Copynumber: 2.0 Consensus size: 484
28962271 GGCTTAAGGA
* * * * *
28962281 GATAAGACTATTGGCTTAAATTTGCTTCTCCATTGTATTGGGAAGATAAGATTCATCATATTCGA
1 GATAAGACTAATGGCTTAAATATGATTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGA
* * * *
28962346 TCTACTCAACTACTGTTTAAGGTGACAAAATCTGTAATCTTGAACCTACTCCACTACGGCTTTGG
66 TCTACTCAACTACTGGTTAAGGTGACAAAATCTGCAATCTTGAACCGACTCCACTACGGCTTTAG
** * * * *
28962411 GAGATAGGTTTAATGGCTTAAATCTGCTTCTCTACTGTAACGGGTAGATAAGATTCACCATCTTC
131 GAGATAGGACTAATGACTTAAATCTGCTTCTCCACTATAACGGGAAGATAAGATTCACCATCTTC
*
28962476 GATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCCTCAACCTACTCCAATACTGCGTA
196 GATCTACTCCACTACTCCTTAGGGTGACAGAATCTGCAATCCTCAACCTACTCCAATACTGCGTA
* * * * * * * *
28962541 GGGAGATTGGACTAATGGCTTACATTTACT-TCTCCACTATCTTGAGAAGATATGATTCACCATC
261 AGGAGAATGAACTAATGGCTTAAATCT-CTGTCTCCACTATATTGAGAAGATAAGATTCACCATA
* *
28962605 TTCGATCCGCTGCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGT
325 TTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * * *
28962670 TTAGGGT-GATAGGACTAATGACTTAAAACCTGCTTCTCCATTGTATTGGGAAGATAAGATTTAC
390 TTAAGGTAAAT-GGACTAATGACTT-AAACCTGCTTCTCCACTGTATTGGGAAGATAAGATATAC
* *
28962734 CATCTTCGATCTGCTCCACTACTGCTTAGTAT
453 CATATTCGATCTACTCCACTACTGCTTAGTAT
* *
28962766 GATAGGACTAATGGCTTAAATATGATTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
1 GATAAGACTAATGGCTTAAATATGATTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGA
* *
28962831 TC-AGCATC-ACTACTGGTTAAGGTGACAGAATCTGCAATCTTCG-ACCGACTCCACTACTGC-T
66 TCTA-C-TCAACTACTGGTTAAGGTGACAAAATCTGCAATCTT-GAACCGACTCCACTACGGCTT
**
28962892 TAGGATGATAGGACTAATGACTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCAT
128 TAGGA-GATAGGACTAATGACTTAAATCTGCTTCTCCACTATAACGGGAAGATAAGATTCACCAT
* * * * *
28962957 CTTCGATTTGCTTCACTACTCCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTG
192 CTTCGATCTACTCCACTACTCCTTAGGGTGACAGAATCTGCAATCCTCAACCTACTCCAATACTG
* * * * * *
28963022 CTTAAGGTGAATGAACTAATGGCTTAAATCTGTGTCTCCACTGTATTGGGAAGATAAGATTCATC
257 CGTAAGGAGAATGAACTAATGGCTTAAATCTCTGTCTCCACTATATTGAGAAGATAAGATTCACC
* * *
28963087 ATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTAC
322 ATATTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTAC
* * *
28963152 TGCTTAAGGTAAATGGACTAATGGCTTAAATCTGTTTCTCCACTGTATTGGGAAGATAAGATATA
387 TGCTTAAGGTAAATGGACTAATGACTTAAACCTGCTTCTCCACTGTATTGGGAAGATAAGATATA
* *
28963217 TCATATTCGATCTACTCCACTACTGTTTAG
452 CCATATTCGATCTACTCCACTACTGCTTAG
28963247 GGTGACAGAA
Statistics
Matches: 418, Mismatches: 57, Indels: 13
0.86 0.12 0.03
Matches are distributed among these distances:
484 67 0.16
485 346 0.83
486 5 0.01
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (484 bp):
GATAAGACTAATGGCTTAAATATGATTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGA
TCTACTCAACTACTGGTTAAGGTGACAAAATCTGCAATCTTGAACCGACTCCACTACGGCTTTAG
GAGATAGGACTAATGACTTAAATCTGCTTCTCCACTATAACGGGAAGATAAGATTCACCATCTTC
GATCTACTCCACTACTCCTTAGGGTGACAGAATCTGCAATCCTCAACCTACTCCAATACTGCGTA
AGGAGAATGAACTAATGGCTTAAATCTCTGTCTCCACTATATTGAGAAGATAAGATTCACCATAT
TCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT
TAAGGTAAATGGACTAATGACTTAAACCTGCTTCTCCACTGTATTGGGAAGATAAGATATACCAT
ATTCGATCTACTCCACTACTGCTTAGTAT
Found at i:28963042 original size:353 final size:352
Alignment explanation
Indices: 28962421--28963114 Score: 975
Period size: 353 Copynumber: 2.0 Consensus size: 352
28962411 GAGATAGGTT
* * * *
28962421 TAATGGCTTAAATCTGCTTCTCTACTGTAACGGGTAGATAAGATTCACCATCTTCGATCTACTCC
1 TAATGGCTTAAATATGATTCTCCACTGTAACGGGAAGATAAGATTCACCATCTTCGATCTACTCC
* * *
28962486 ACTACTGCTTAGGGTGACAGAATCTGCAATCCTCAACCTACTCCAATACTGCGTAGGGAGATTGG
66 ACTACTGCTTAAGGTGACAGAATCTGCAATCCTCAACCGACTCCAATACTGCGTAGGGAGATAGG
* * * * *
28962551 ACTAATGGCTTACATTTACTTCTCCACTATCTTGAGAAGATATGATTCACCATCTTCGATCCGCT
131 ACTAATGACTTAAATCTACTTCTCCACTATATTGAGAAGATAAGATTCACCATCTTCGATCCGCT
* * *
28962616 GCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGTTTAGGGTGATA
196 GCACTACTCCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAAGGTGATA
* * * *
28962681 GGACTAATGACTTAAAACCTGCT-TCTCCATTGTATTGGGAAGATAAGATTTACCATCTTCGATC
261 GAACTAATGACTT-AAACCTG-TGTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATC
28962745 TGCTCCACTACTGCTTAGTATGATAGGAC
324 TGCTCCACTACTGCTTAGTATGATAGGAC
**
28962774 TAATGGCTTAAATATGATTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATC-AGCAT
1 TAATGGCTTAAATATGATTCTCCACTGTAACGGGAAGATAAGATTCACCATCTTCGATCTA-C-T
* * * * *
28962838 -CACTACTGGTTAAGGTGACAGAATCTGCAATCTTCGACCGACTCCACTACTGCTTA-GGATGAT
64 CCACTACTGCTTAAGGTGACAGAATCTGCAATCCTCAACCGACTCCAATACTGCGTAGGGA-GAT
* * **
28962901 AGGACTAATGACTTAAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATTT
128 AGGACTAATGACTTAAATCTACTTCTCCACTATATTGAGAAGATAAGATTCACCATCTTCGATCC
* *
28962966 GCTTCACTACTCCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAAGGTG
193 GCTGCACTACTCCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAAGGTG
* * *
28963031 A-ATGAACTAATGGCTTAAATCTGTGTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGA
258 ATA-GAACTAATGACTTAAACCTGTGTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGA
*
28963095 TCTGCTCCACTACTGTTTAG
322 TCTGCTCCACTACTGCTTAG
28963115 GGTGACAGAA
Statistics
Matches: 300, Mismatches: 36, Indels: 11
0.86 0.10 0.03
Matches are distributed among these distances:
351 1 0.00
352 65 0.22
353 233 0.78
354 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (352 bp):
TAATGGCTTAAATATGATTCTCCACTGTAACGGGAAGATAAGATTCACCATCTTCGATCTACTCC
ACTACTGCTTAAGGTGACAGAATCTGCAATCCTCAACCGACTCCAATACTGCGTAGGGAGATAGG
ACTAATGACTTAAATCTACTTCTCCACTATATTGAGAAGATAAGATTCACCATCTTCGATCCGCT
GCACTACTCCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAAGGTGATA
GAACTAATGACTTAAACCTGTGTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTG
CTCCACTACTGCTTAGTATGATAGGAC
Found at i:28963322 original size:617 final size:617
Alignment explanation
Indices: 28962118--28963380 Score: 1691
Period size: 617 Copynumber: 2.0 Consensus size: 617
28962108 AGAATCTGCA
* * * * * *
28962118 ATCTTCGACCTACTCCACCACTGCTTAGGATGATAGGACTAATTGCTTAAATCTGCTTCCCCACT
1 ATCTTCGATCTGCTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATATGATTCCCCACT
* * * * * *
28962183 GTATTGGGAAGATAAGATTCATCATATTCGATCTGCTTCGCTACTGTTTAGGGTGACAGAATCTG
66 GTATTGGGAAGATAAGATTCACCATATTCGATCAGCATCACTACTGGTTAAGGTGACAGAATCTG
* * *
28962248 CAATCTTCAACCAACTCCACTATGGCTTAAGGAGATAAGACTATTGGCTTAAATTTGCTTCTCCA
131 CAATCTTCAACCAACTCCACTATGGCTTAAGGAGATAAGACTAATGACTTAAATCTGCTTCTCCA
* * * **
28962313 TTGTATTGGGAAGATAAGATTCATCATATTCGATCTACTCAACTACTGTTTAAGGTGACAAAATC
196 CTATATTGGGAAGATAAGATTCACCATATTCGATCTACTCAACTACTCCTTAAGGTGACAAAATC
* * * ***
28962378 TGTAATCTTGAACCTACTCCACTACGGCTTTGGGAGATAGGTTTAATGGCTTAAATCTGCTTCTC
261 TGCAATCTTCAACCTACTCCACTACGGCTTAGGGAGATAGAACTAATGGCTTAAATCTGCTTCTC
* * *
28962443 TACTGTAACGGGTAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAA
326 CACTGTAACGGGAAGATAAGATTCACCATATTCGATCTACTCCACTACTGCTTAGGGTGACAGAA
* * *
28962508 TCTGCAATCCTCAACCTACTCCAATACTGCGTAGGGAGATTGGACTAATGGCTTACATTTACTTC
391 TCTGCAATCCTCAACCTACTCCAATACTGCGTAGGGAGAATGGACTAATGGCTTAAATCTACTTC
* * * * *
28962573 TCCACTATCTTGAGAAGATATGATTCACCATCTTCGATCCGCTGCACTACTGCTTAGGGTGACAG
456 TCCACTATATTGAGAAGATAAGATTCACCATATTCGATCCACTCCACTACTGCTTAGGGTGACAG
*
28962638 AATCTGCAATCTTCAACCTACTCCACTACTGTTTAGGGTGATAGGACTAATGACTTAAAACCTGC
521 AATCTGCAATCTTCAACCTACTCCACTACTATTTAGGGTGATAGGACTAATGACTTAAAACCTGC
* *
28962703 TTCTCCAT-TGTATTGGGAAGATAAGATTTACC
586 TTCTCC-TCTGTATTAGGAAGATAAGATTAACC
* *
28962735 ATCTTCGATCTGCTCCACTACTGCTTAGTATGATAGGACTAATGGCTTAAATATGATTCTCCACT
1 ATCTTCGATCTGCTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATATGATTCCCCACT
*
28962800 GTATTGGGAAGATAAGATTCACCATCTTCGATCAGCATCACTACTGGTTAAGGTGACAGAATCTG
66 GTATTGGGAAGATAAGATTCACCATATTCGATCAGCATCACTACTGGTTAAGGTGACAGAATCTG
* * *
28962865 CAATCTTCGACCGACTCCACTACT-GCTT-AGGATGATAGGACTAATGACTTAAATCTGCTTCTC
131 CAATCTTCAACCAACTCCACTA-TGGCTTAAGGA-GATAAGACTAATGACTTAAATCTGCTTCTC
* * * * *
28962928 CACTATATTGGGAAGATAAGATTCACCATCTTCGATTTGCTTC-ACTACTCCTTAGGGTGACAGA
194 CACTATATTGGGAAGATAAGATTCACCATATTCGATCTAC-TCAACTACTCCTTAAGGTGACAAA
* *
28962992 ATCTGCAATCTTCAACCTACTCCAGTACTGCTTAAGGTGA-AT-GAACTAATGGCTTAAATCTG-
258 ATCTGCAATCTTCAACCTACTCCACTACGGCTT-AGG-GAGATAGAACTAATGGCTTAAATCTGC
** * * *
28963054 TGTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTG
321 T-TCTCCACTGTAACGGGAAGATAAGATTCACCATATTCGATCTACTCCACTACTGCTTAGGGTG
* * * *
28963119 ACAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAAGGTA-AATGGACTAATGGCTTAAAT
385 ACAGAATCTGCAATCCTCAACCTACTCCAATACTGCGT-AGGGAGAATGGACTAATGGCTTAAAT
** * * * * *
28963183 CTGTTTCTCCACTGTATTGGGAAGATAAGATAT-ATCATATTCGATCTACTCCACTACTGTTTAG
449 CTACTTCTCCACTATATTGAGAAGATAAGAT-TCACCATATTCGATCCACTCCACTACTGCTTAG
* * *
28963247 GGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTATCTTAGGGTGATTGGACTAATGGCTT
513 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTAT-TTAGGGTGATAGGACTAATGACTT
*
28963312 -AAATCTGCTTCTCCTCTGTATTAGGAAGATAAGATTAACC
577 AAAACCTGCTTCTCCTCTGTATTAGGAAGATAAGATTAACC
* *
28963352 ATCTTCGATCTGCTCCACTTCTACTTAGG
1 ATCTTCGATCTGCTCCACTACTGCTTAGG
28963381 GTGACAGAAT
Statistics
Matches: 560, Mismatches: 76, Indels: 20
0.85 0.12 0.03
Matches are distributed among these distances:
616 6 0.01
617 518 0.93
618 34 0.06
619 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (617 bp):
ATCTTCGATCTGCTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATATGATTCCCCACT
GTATTGGGAAGATAAGATTCACCATATTCGATCAGCATCACTACTGGTTAAGGTGACAGAATCTG
CAATCTTCAACCAACTCCACTATGGCTTAAGGAGATAAGACTAATGACTTAAATCTGCTTCTCCA
CTATATTGGGAAGATAAGATTCACCATATTCGATCTACTCAACTACTCCTTAAGGTGACAAAATC
TGCAATCTTCAACCTACTCCACTACGGCTTAGGGAGATAGAACTAATGGCTTAAATCTGCTTCTC
CACTGTAACGGGAAGATAAGATTCACCATATTCGATCTACTCCACTACTGCTTAGGGTGACAGAA
TCTGCAATCCTCAACCTACTCCAATACTGCGTAGGGAGAATGGACTAATGGCTTAAATCTACTTC
TCCACTATATTGAGAAGATAAGATTCACCATATTCGATCCACTCCACTACTGCTTAGGGTGACAG
AATCTGCAATCTTCAACCTACTCCACTACTATTTAGGGTGATAGGACTAATGACTTAAAACCTGC
TTCTCCTCTGTATTAGGAAGATAAGATTAACC
Found at i:28965078 original size:44 final size:44
Alignment explanation
Indices: 28965028--28965636 Score: 183
Period size: 44 Copynumber: 13.9 Consensus size: 44
28965018 ATAAGATTCA
*
28965028 CAATCTTCGATCTGCTCCACTACTGCTTAGGGTGATAGAATCTG
1 CAATCTTCAATCTGCTCCACTACTGCTTAGGGTGATAGAATCTG
* * * * *
28965072 CAATCTTCAACCTACTCCACTCCTGCTTAAGGTGATAGGA-CT-
1 CAATCTTCAATCTGCTCCACTACTGCTTAGGGTGATAGAATCTG
* * * * * * * *
28965114 -AATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTC-A
1 CAAT--CTTCAATCTGCTCCACTACTGCT-TAGGG-TGAT-AGAATCTG
* * *
28965160 CCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
1 CAATCTTCAATCTGCTCCACTACTGCTTAGGGTGATAGAATCTG
* * * *
28965204 CAATCTTCAACCTACTCCACTA-TCGCTTAGGGGGATAGGA-CT-
1 CAATCTTCAATCTGCTCCACTACT-GCTTAGGGTGATAGAATCTG
* * * * * * *
28965246 -AATGGCTTCAATATGCTTCTCCACTG-TATTGGGAAGATTAGATTC-G
1 CAAT--CTTCAATCTGCTCCACTACTGCT-TAGGG-TGA-TAGAATCTG
* * * *
28965292 CCATCTTCGATCTGCAT-CACTACTGGTTAGGGTGACAGAATCTG
1 CAATCTTCAATCTGC-TCCACTACTGCTTAGGGTGATAGAATCTG
* * *
28965336 CAATCTTCAA-CCGACTCCACTATTGCTTAGGGTGATAGGA-CT-
1 CAATCTTCAATCTG-CTCCACTACTGCTTAGGGTGATAGAATCTG
* * * * * * *
28965378 -AATGGCTTAAATCTGCTTC-TTCACTG-TATTGGGAAGATCAG-ATTTAT
1 CAAT--CTTCAATCTGCTCCACT-ACTGCT-TAGGG-TGAT-AGAATCT-G
* * * * * * *
28965425 C-ATATTCGATCAGCTCCACTACTGTTTAGGGTAACAGAATCTA
1 CAATCTTCAATCTGCTCCACTACTGCTTAGGGTGATAGAATCTG
* * * * *
28965468 TAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGA-CT-
1 CAATCTTCAATCTGCTCCACTACTGCTTAGGGTGATAGAATCTG
* * * * * ** * *
28965510 -AATGGCTTAAATCTGCTTCTCCACTG-TATTGGAAGATAAGATTC-A
1 CAAT--CTTCAATCTGCTCCACTACTGCT-TAGGGTGAT-AGAATCTG
* * *
28965555 CCATCTTCGATCTGCAT-CACTACTGCTTAGGGTGACAGAATCTG
1 CAATCTTCAATCTGC-TCCACTACTGCTTAGGGTGATAGAATCTG
* *
28965599 CAATCTTCAA-CCGACTCCACTACTGCTTAGGATGATAG
1 CAATCTTCAATCTG-CTCCACTACTGCTTAGGGTGATAG
28965637 GACTAATGGA
Statistics
Matches: 394, Mismatches: 119, Indels: 104
0.64 0.19 0.17
Matches are distributed among these distances:
41 12 0.03
42 5 0.01
43 103 0.26
44 192 0.49
45 67 0.17
46 9 0.02
47 6 0.02
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (44 bp):
CAATCTTCAATCTGCTCCACTACTGCTTAGGGTGATAGAATCTG
Found at i:28965107 original size:132 final size:132
Alignment explanation
Indices: 28964870--28965718 Score: 1269
Period size: 132 Copynumber: 6.4 Consensus size: 132
28964860 ACCATGAATA
* * * *
28964870 CCACTGTATTGGCAAGACAAGATTCACCATCTTCGATCTGCAT-CACTATTGGTTAGGGTGACAG
1 CCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAG
* *
28964934 AATTTCCAATCTTCAA-CTAACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGC
65 AATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGC
28964998 TTCT
129 TTCT
* ** * *
28965002 CCACTTTATTTTGAAGATAAGATTCACAATCTTCGATCTGCTCCACTACTGCTTAGGGTGATAGA
1 CCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGA
* *
28965067 ATCTGCAATCTTCAACCTACTCCACTCCTGCTTAAGGTGATAGGACTAATGGCTTAAATCTGCTT
66 ATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTT
28965132 CT
131 CT
28965134 CCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGA
1 CCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGA
* * *
28965199 ATCTGCAATCTTCAACCTACTCCACTA-TCGCTTAGGGGGATAGGACTAATGGCTTCAATATGCT
66 ATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTGATAGGACTAATGGCTTAAATCTGCT
28965263 TCT
130 TCT
* * *
28965266 CCACTGTATTGGGAAGATTAGATTCGCCATCTTCGATCTGCAT-CACTACTGGTTAGGGTGACAG
1 CCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAG
* *
28965330 AATCTGCAATCTTCAACCGACTCCACTATTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCT
65 AATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCT
28965395 TCT
130 TCT
* * * * * * * *
28965398 TCACTGTATTGGGAAGATCAGATTTATCATATTCGATCAGCTCCACTACTGTTTAGGGTAACAGA
1 CCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGA
** *
28965463 ATCTATAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTT
66 ATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTT
28965528 CT
131 CT
28965530 CCACTGTATT-GGAAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTGCTTAGGGTGACAG
1 CCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAG
* * *
28965593 AATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGATGATAGGACTAATGGATTAAATCTGCT
65 AATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCT
28965658 TCT
130 TCT
* * *
28965661 CCACTGTATTGGGAAGATAGGATTCACCATCATCGATCTGCTCCACTACAGCTTAGGG
1 CCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGG
28965719 AGATAGGACC
Statistics
Matches: 647, Mismatches: 61, Indels: 18
0.89 0.08 0.02
Matches are distributed among these distances:
131 120 0.19
132 523 0.81
133 4 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (132 bp):
CCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGA
ATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTT
CT
Found at i:28967201 original size:132 final size:132
Alignment explanation
Indices: 28966964--28967261 Score: 389
Period size: 132 Copynumber: 2.3 Consensus size: 132
28966954 NNNNNNNNNT
* * * * *
28966964 ATCTTTAACCTACTCCACTACTGCTCAGGGAGATAGGACTAATGGCTTTAATCTACTACTCCACC
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAAGACTAATGGCTTAAATCTACTACTCCACC
* * * * * * *
28967029 GTATTGGGATGATAAGATTTACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTG
66 ATATTCGGAAGATAAGATTCACCATATTCGATCTACTCCACTACAGCTTAGGGTGACACAATCTG
28967094 CA
131 CA
* * * * *
28967096 ATCTTCAGCCTACTCCACTACCGCTTAGGGTGATAAGACTAATGGCTTAAATCTGCTTCTCCACT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAAGACTAATGGCTTAAATCTACTACTCCACC
* * * *
28967161 ATATTCGGAAGATAAGATTCGCCATATTCGATCTGCTCCACTACAGCTTATGGTGACACACTCTG
66 ATATTCGGAAGATAAGATTCACCATATTCGATCTACTCCACTACAGCTTAGGGTGACACAATCTG
28967226 CA
131 CA
* *
28967228 ATCTTGAACCTACTCCACTACTACTTAGGGTGAT
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGAT
28967262 TGGGAAGATA
Statistics
Matches: 141, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
132 141 1.00
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (132 bp):
ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAAGACTAATGGCTTAAATCTACTACTCCACC
ATATTCGGAAGATAAGATTCACCATATTCGATCTACTCCACTACAGCTTAGGGTGACACAATCTG
CA
Found at i:28967335 original size:97 final size:97
Alignment explanation
Indices: 28967167--28967358 Score: 285
Period size: 97 Copynumber: 2.0 Consensus size: 97
28967157 CACTATATTC
* * * *
28967167 GGAAGATAAGATTCGCCATATTCGATCTGCTCCACTACAGCTTATGGTGACACACTCTGCAATCT
1 GGAAGATAAGATTCACCATAGTCGATCTGCTCCACTACAGCTTAGGGTGACACAATCTGCAATCT
28967232 TGAACCTACTCCACTACTACTTAGGGTGATTG
66 TGAACCTACTCCACTACTACTTAGGGTGATTG
* * * *
28967264 GGAAGATAGGATTCACCATCGTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCT
1 GGAAGATAAGATTCACCATAGTCGATCTGCTCCACTACAGCTTAGGGTGACACAATCTGCAATCT
* * *
28967329 TTAACCTACTCCACTACTGCTTTGGGTGAT
66 TGAACCTACTCCACTACTACTTAGGGTGAT
28967359 AGGACTAATG
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
97 84 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (97 bp):
GGAAGATAAGATTCACCATAGTCGATCTGCTCCACTACAGCTTAGGGTGACACAATCTGCAATCT
TGAACCTACTCCACTACTACTTAGGGTGATTG
Found at i:28967422 original size:229 final size:229
Alignment explanation
Indices: 28967031--28967493 Score: 683
Period size: 229 Copynumber: 2.0 Consensus size: 229
28967021 ACTCCACCGT
* * *
28967031 ATTGGGATGATAAGATTTACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATTGGGAAGATAAGATTCACCATCGTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
*
28967096 ATCTTCAGCCTACTCCACTACCGCTTAGGGTGATAAGACTAATGGCTTAAATCTGCTTCTCCACT
66 ATCTTCAACCTACTCCACTACCGCTTAGGGTGATAAGACTAATGGCTTAAATCTGCTTCTCCACT
* * * * * *
28967161 ATATTCGGAAGATAAGATTCGCCATATTCGATCTGCTCCACTACAGCTTATGGTGACACACTCTG
131 ATATTCGGAAAATAAGATTCACCATATTCGATCTACTCCAATACAGCTTAGGGTGACACAATCTG
* *
28967226 CAATCTTGAACCTACTCCACTACTACTTAGGGTG
196 CAATCTTCAACCTACTCCACTACTACTTAGGATG
* *
28967260 ATTGGGAAGATAGGATTCACCATCGTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATTGGGAAGATAAGATTCACCATCGTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
* * * *
28967325 ATCTTTAACCTACTCCACTACTGCTTTGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
66 ATCTTCAACCTACTCCACTACCGCTTAGGGTGATAAGACTAATGGCTTAAATCTGCTTCTCCACT
* * * * ** *
28967390 GTATTGGGAAAATAATATTCACCATCTTCGATCTACTCCAATACTTCTTAGGGTGACAGAATCTG
131 ATATTCGGAAAATAAGATTCACCATATTCGATCTACTCCAATACAGCTTAGGGTGACACAATCTG
* *
28967455 CAATCTTCAACCTACTCCTCTACTGCTTAGGATG
196 CAATCTTCAACCTACTCCACTACTACTTAGGATG
28967489 ATTGG
1 ATTGG
28967494 ACTAATGGCT
Statistics
Matches: 207, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
229 207 1.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (229 bp):
ATTGGGAAGATAAGATTCACCATCGTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
ATCTTCAACCTACTCCACTACCGCTTAGGGTGATAAGACTAATGGCTTAAATCTGCTTCTCCACT
ATATTCGGAAAATAAGATTCACCATATTCGATCTACTCCAATACAGCTTAGGGTGACACAATCTG
CAATCTTCAACCTACTCCACTACTACTTAGGATG
Found at i:28967484 original size:44 final size:44
Alignment explanation
Indices: 28967288--28967752 Score: 184
Period size: 44 Copynumber: 10.6 Consensus size: 44
28967278 ACCATCGTCG
* *
28967288 ATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTTA
1 ATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCA
* * * * *
28967332 ACCTACTCCACTACTGCTTTGGGTGATAGGA-CT--AATGGCTTAA
1 ATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCA
* * * * * * * * * * *
28967375 ATCTGCTTCTCCACTG-TATTGGG-AAAATAATATTCACCATCTTCG
1 ATCTACTCCACTACTGCT-TAGGGTGACAGAATCTGCA--ATCTTCA
* *
28967420 ATCTACTCCAATACTTCTTAGGGTGACAGAATCTGCAATCTTCA
1 ATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCA
* * * ** * *
28967464 ACCTACTCCTCTACTGCTTAGGATGATTGGA-CT--AATGGCTTAA
1 ATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCA
* * * * * ** * * * * *
28967507 ATCTTCTTCTCCACTGTATTAGGAAGATAAGATTC-ACCATCTTCG
1 ATCTACTCCACTACTG-CTTAGGGTGA-CAGAATCTGCAATCTTCA
28967552 ATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCA
1 ATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCA
* * * * *
28967596 ACCTACTCCACTACTACTTAGGGTGATAGGA-CT--AATGACTTAA
1 ATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCA
* * * * * ** * * * * *
28967639 ATCTGCTTCTCCACTG-TATTGGAAGATAAGATTC-ACCATCTTCG
1 ATCTACTCCACTACTGCT-TAGGGTGA-CAGAATCTGCAATCTTCA
*
28967683 ATCTACTCCGCTACTGCTTAGGGTGACAGAATCTGCAATCTTCA
1 ATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCA
**
28967727 GCCTACTCCACTACTGCTTAGGGTGA
1 ATCTACTCCACTACTGCTTAGGGTGA
28967753 TAGGACTAAT
Statistics
Matches: 294, Mismatches: 100, Indels: 54
0.66 0.22 0.12
Matches are distributed among these distances:
41 9 0.03
42 5 0.02
43 72 0.24
44 156 0.53
45 36 0.12
46 12 0.04
47 4 0.01
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (44 bp):
ATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCA
Found at i:28967736 original size:131 final size:132
Alignment explanation
Indices: 28967260--28967968 Score: 1145
Period size: 132 Copynumber: 5.4 Consensus size: 132
28967250 ACTTAGGGTG
* * *
28967260 ATTGGGAAGATAGGATTCACCATCGTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
* *
28967325 ATCTTTAACCTACTCCACTACTGCTTTGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
66 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
28967390 GT
131 GT
* * * *
28967392 ATTGGGAAAATAATATTCACCATCTTCGATCTACTCCAATACTTCTTAGGGTGACAGAATCTGCA
1 ATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
* * * *
28967457 ATCTTCAACCTACTCCTCTACTGCTTAGGATGATTGGACTAATGGCTTAAATCTTCTTCTCCACT
66 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
28967522 GT
131 GT
*
28967524 ATTAGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
* *
28967589 ATCTTCAACCTACTCCACTACTACTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACT
66 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
28967654 GT
131 GT
*
28967656 ATT-GGAAGATAAGATTCACCATCTTCGATCTACTCCGCTACTGCTTAGGGTGACAGAATCTGCA
1 ATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
*
28967720 ATCTTCAGCCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC-
66 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
*
28967784 CT
131 GT
*
28967786 ATTGGGAAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTGCTTAGGGTGACAGAATCTGC
1 ATTGGGAAGATAAGATTCACCATCTTCGATCTAC-TCCACTACTGCTTAGGGTGACAGAATCTGC
* * *
28967850 AATCTTCAACCGACTCCACTACTGCTTAGGATGATAGGACTAATGGATTAAATCTGCTTCTCCAC
65 AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
28967915 TGT
130 TGT
* * * *
28967918 ATTGGGAAGATAGGATTCACCATCATCGATCTGCTCCACTACAGCTTAGGG
1 ATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGG
28967969 AGATAGGACC
Statistics
Matches: 534, Mismatches: 39, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
130 4 0.01
131 239 0.45
132 291 0.54
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.31
Consensus pattern (132 bp):
ATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
GT
Found at i:28968015 original size:88 final size:89
Alignment explanation
Indices: 28967863--28968056 Score: 266
Period size: 88 Copynumber: 2.2 Consensus size: 89
28967853 CTTCAACCGA
* * * *
28967863 CTCCACTACTGCTTA-GGATGATAGGACTAATGGATTAAATCTGCTTCTCCACTGTATTGGGAAG
1 CTCCACTACTGCTTAGGGATGATAGGACCAATGGATGAAATCTGCTTCTCCACTATATTGAGAAG
* * *
28967927 ATAGGATTCACCATCATCGATCTG
66 ATAAGAATCACCATCATCGATCCG
* * * *
28967951 CTCCACTACAGCTTAGGGA-GATAGGACCAATGGCTGAAATCTGCTTTTCCACTATCTTGAGAAG
1 CTCCACTACTGCTTAGGGATGATAGGACCAATGGATGAAATCTGCTTCTCCACTATATTGAGAAG
*
28968015 ATAAGAATCACCATCTTCGATCCG
66 ATAAGAATCACCATCATCGATCCG
28968039 CTCCACTACTGCTTAGGG
1 CTCCACTACTGCTTAGGG
28968057 TGACAGAATC
Statistics
Matches: 92, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
88 89 0.97
89 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (89 bp):
CTCCACTACTGCTTAGGGATGATAGGACCAATGGATGAAATCTGCTTCTCCACTATATTGAGAAG
ATAAGAATCACCATCATCGATCCG
Found at i:28968187 original size:220 final size:219
Alignment explanation
Indices: 28967729--28968194 Score: 722
Period size: 220 Copynumber: 2.1 Consensus size: 219
28967719 AATCTTCAGC
* * *
28967729 CTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACCTATTGGGAA
1 CTACTCCACTACTGCTTAGGGTGATAGGACCAATGGCTGAAATCTGCTTCTCCACCTATTGAGAA
* *
28967794 GATAAGATTCACCATCTTCGATCTGCATCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAA
66 GATAAGAATCACCATCTTCGATCCGCATCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAA
28967859 CCGACTCCACTACTGCTTAGGATGATAGGACTAATGGATTAAATCTGCTTCTCCACTGTATTGGG
131 CCGACTCCACTACTGCTTAGGATGATAGGACTAATGGATTAAATCTGCTTCTCCACTGTATTGGG
*
28967924 AAGATAGGATTCACCATCATCGAT
196 AAGATAAGATTCACCATCATCGAT
* * * *
28967948 CTGCTCCACTACAGCTTAGGGAGATAGGACCAATGGCTGAAATCTGCTTTTCCA-CTATCTTGAG
1 CTACTCCACTACTGCTTAGGGTGATAGGACCAATGGCTGAAATCTGCTTCTCCACCTA--TTGAG
28968012 AAGATAAGAATCACCATCTTCGATCCGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT
64 AAGATAAGAATCACCATCTTCGATCCGCAT-CACTACTGCTTAGGGTGACAGAATCTGCAATCTT
* * *
28968076 CAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATT
128 CAACCGACTCCACTACTGCTTAGGATGATAGGACTAATGGATTAAATCTGCTTCTCCACTGTATT
* * *
28968141 GTGAAGATAAGATTCACCGTCTTCGAT
193 GGGAAGATAAGATTCACCATCATCGAT
*
28968168 CTATTCCAAC-ACTGCTTAGGGTGATAG
1 CTACTCC-ACTACTGCTTAGGGTGATAG
28968195 AATCTGCAAT
Statistics
Matches: 223, Mismatches: 20, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
218 3 0.01
219 49 0.22
220 169 0.76
221 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (219 bp):
CTACTCCACTACTGCTTAGGGTGATAGGACCAATGGCTGAAATCTGCTTCTCCACCTATTGAGAA
GATAAGAATCACCATCTTCGATCCGCATCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAA
CCGACTCCACTACTGCTTAGGATGATAGGACTAATGGATTAAATCTGCTTCTCCACTGTATTGGG
AAGATAAGATTCACCATCATCGAT
Found at i:28968188 original size:132 final size:131
Alignment explanation
Indices: 28967951--28968341 Score: 525
Period size: 132 Copynumber: 3.0 Consensus size: 131
28967941 CATCGATCTG
* * * * * *
28967951 CTCCACTACAGCTTAGGGAGATAGGACCAATGGCTGAAATCTGCTTTTCCACTATCTTGAGAAGA
1 CTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGAGAAGA
* *
28968016 TAAGAATCACCATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
66 TAAGATTCACCATCTTCGAT-CACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
28968081 TA
130 TA
* *
28968083 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGTGAAGA
1 CTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGAGAAGA
* * * *
28968148 TAAGATTCACCGTCTTCGATCTATTCCAAC-ACTGCTTAGGGTGATAGAATCTGCAATATTCAAC
66 TAAGATTCACCATCTTCGATC-ACTCC-ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAAC
28968212 CTA
129 CTA
* * * * *
28968215 CTCCACTACTACATAGGGCGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAA-A
1 CTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGAGAAGA
* * *
28968279 GTAAGATTCATCATATTCGATCAGCTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTCA
66 -TAAGATTCACCATCTTCGATCA-CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCA
28968342 TCCAATTACA
Statistics
Matches: 228, Mismatches: 26, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
131 5 0.02
132 221 0.97
133 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (131 bp):
CTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGAGAAGA
TAAGATTCACCATCTTCGATCACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
A
Found at i:28969867 original size:44 final size:44
Alignment explanation
Indices: 28969553--28970261 Score: 197
Period size: 44 Copynumber: 15.9 Consensus size: 44
28969543 NNNNNNNNAA
* *
28969553 GATAGGATTCACCATTCTTCGATCTGCTCCACTACTGATTAGGGT
1 GATAAGATTCACCA-TCTTCAATCTGCTCCACTACTGATTAGGGT
* * * * * * *
28969598 GGA-CAGAATCTGCAATTCTTCAACCTACTCCACTACTGCTTAGGGGT
1 -GATAAGATTC-ACCA-TCTTCAATCTGCTCCACTACTGATTA-GGGT
* * * * * *
28969645 GATAGGACTT-A--ATGGCTTAAATCTGCTTCTCCACTGTATT-GGGAAA
1 GATAAGA-TTCACCAT--CTTCAATCTGCTCCACTACTG-ATTAGGG--T
*
28969691 GATAAAGATTCACCCATCTTCGATCCTGCTCCACTACTGATTAGGGT
1 GAT-AAGATTCA-CCATCTTCAAT-CTGCTCCACTACTGATTAGGGT
* * * * * * *
28969738 GA-CAGAATCTGCAATCTTCAACCTACTCCCACTACTGCTTAGGGT
1 GATAAGATTC-ACCATCTTCAATCTGCT-CCACTACTGATTAGGGT
* * * * * * **
28969783 GATAGGACT-A--ATGGCTTAAATCTGCTTCTCCACTGTATTAGGAA
1 GATAAGATTCACCAT--CTTCAATCTGCTCCACTACTG-ATTAGGGT
*
28969827 GATAAGATTCACCATCTTCGATCTGCTCCACTACTGATTAGGGT
1 GATAAGATTCACCATCTTCAATCTGCTCCACTACTGATTAGGGT
* * * * * * *
28969871 GA-CAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT
1 GATAAGATTC-ACCATCTTCAATCTGCTCCACTACTGATTAGGGT
* * * * * * * **
28969915 CATAGGACT-A--ATGGCTTAAATCTGCTTCTCCACTGTATTAGGAA
1 GATAAGATTCACCAT--CTTCAATCTGCTCCACTACTG-ATTAGGGT
* **
28969959 GATAAGATTAACCATCTTTGATCTGCTCCACTACTGATTAGGGT
1 GATAAGATTCACCATCTTCAATCTGCTCCACTACTGATTAGGGT
* * * * * **
28970003 GA-CAGAATCTGCAATCTTCAACCTAATCCACTACT-ACTTAGGGT
1 GATAAGATTC-ACCATCTTCAATCTGCTCCACTACTGA-TTAGGGT
* * * * * * * **
28970047 GATAGGACT-A--ATGGCTTAAATCTGCTTCTCCACTGTATTCGGAA
1 GATAAGATTCACCAT--CTTCAATCTGCTCCACTACTG-ATTAGGGT
* **
28970091 GATAAGATTAACCATCTTTGATCTGCTCCACTACTGATTAGGGT
1 GATAAGATTCACCATCTTCAATCTGCTCCACTACTGATTAGGGT
* * * * * *
28970135 GA-CAGAATCTGCAATCTTCAACCTACTCCACTACT-ACTTAGGGT
1 GATAAGATTC-ACCATCTTCAATCTGCTCCACTACTGA-TTAGGGT
* * * * * *
28970179 GATAGGACT-A--ATGGCTTAAATCTGCTTCTCTACTGTATT-GGGAA
1 GATAAGATTCACCAT--CTTCAATCTGCTCCACTACTG-ATTAGGG-T
*
28970223 GATAAGATTCACCATCTTCGATCTGCTCCACTACTGATT
1 GATAAGATTCACCATCTTCAATCTGCTCCACTACTGATT
28970262 NNNNNNNNNN
Statistics
Matches: 460, Mismatches: 149, Indels: 110
0.64 0.21 0.15
Matches are distributed among these distances:
41 6 0.01
42 2 0.00
43 68 0.15
44 170 0.37
45 130 0.28
46 39 0.08
47 20 0.04
48 9 0.02
49 14 0.03
50 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (44 bp):
GATAAGATTCACCATCTTCAATCTGCTCCACTACTGATTAGGGT
Found at i:28969949 original size:132 final size:132
Alignment explanation
Indices: 28969551--28970261 Score: 1215
Period size: 132 Copynumber: 5.3 Consensus size: 132
28969541 NNNNNNNNNN
*
28969551 AAGATAGGATTCACCATTCTTCGATCTGCTCCACTACTGATTAGGGTGGACAGAATCTGCAATTC
1 AAGATAAGATTCACCA-TCTTCGATCTGCTCCACTACTGATTAGGGT-GACAGAATCTGCAA-TC
28969616 TTCAACCTACTCCACTACTGCTTAGGGGTGATAGGACTTAATGGCTTAAATCTGCTTCTCCACTG
63 TTCAACCTACTCCACTACTGCTTA-GGGTGATAGGAC-TAATGGCTTAAATCTGCTTCTCCACTG
*
28969681 TATTGGG
126 TATTAGG
28969688 AAAGATAAAGATTCACCCATCTTCGATCCTGCTCCACTACTGATTAGGGTGACAGAATCTGCAAT
1 -AAGAT-AAGATTCA-CCATCTTCGAT-CTGCTCCACTACTGATTAGGGTGACAGAATCTGCAAT
28969753 CTTCAACCTACTCCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
62 CTTCAACCTACT-CCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
28969818 TATTAGG
126 TATTAGG
28969825 AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTC
1 AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTC
*
28969890 AACCTACTCCACTACTGCTTAGGGTCATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTA
66 AACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTA
28969955 GG
131 GG
* *
28969957 AAGATAAGATTAACCATCTTTGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTC
1 AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTC
* * *
28970022 AACCTAATCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTC
66 AACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTA
28970087 GG
131 GG
* *
28970089 AAGATAAGATTAACCATCTTTGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTC
1 AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTC
* * *
28970154 AACCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCTACTGTATTG
66 AACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTA
28970219 GG
131 GG
28970221 AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGATT
1 AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGATT
28970262 NNNNNNNNNN
Statistics
Matches: 555, Mismatches: 14, Indels: 14
0.95 0.02 0.02
Matches are distributed among these distances:
132 352 0.63
133 49 0.09
134 11 0.02
135 8 0.01
136 5 0.01
137 33 0.06
138 30 0.05
139 42 0.08
140 25 0.05
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTC
AACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTA
GG
Found at i:28972143 original size:44 final size:44
Alignment explanation
Indices: 28972095--28972291 Score: 143
Period size: 44 Copynumber: 4.5 Consensus size: 44
28972085 CTTTGATCTG
*
28972095 CTCCACTACTGATTAGGGTGACAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGATTAGGGTGACAGAATCTACAATCTTCAACCTA
* * * * * *
28972139 CTCCACTACTGCTTAGGGTGATAGGA-CT--AATGGCTTAAATCTG
1 CTCCACTACTGATTAGGGTGACAGAATCTACAAT--CTTCAACCTA
* * * * * * * * * *
28972182 CTTCTCCACTGTATT-GGGAAGATAAGATTC-ACCATCTTCGATCTG
1 CTCCACTACTG-ATTAGGG-TGA-CAGAATCTACAATCTTCAACCTA
*
28972227 CTCCACTACTGATTAGGGTGACAAAATCTACAATCTTCAACCTA
1 CTCCACTACTGATTAGGGTGACAGAATCTACAATCTTCAACCTA
*
28972271 CTCCACTACTGCTTAGGGTGA
1 CTCCACTACTGATTAGGGTGA
28972292 TAGGACTAAT
Statistics
Matches: 114, Mismatches: 29, Indels: 20
0.70 0.18 0.12
Matches are distributed among these distances:
41 3 0.03
43 24 0.21
44 63 0.55
45 21 0.18
46 1 0.01
47 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (44 bp):
CTCCACTACTGATTAGGGTGACAGAATCTACAATCTTCAACCTA
Found at i:28972528 original size:44 final size:44
Alignment explanation
Indices: 28972478--28972685 Score: 133
Period size: 44 Copynumber: 4.7 Consensus size: 44
28972468 AAGATTCACC
28972478 ATCTTCGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCA
1 ATCTTCGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCA
* * * * * *
28972522 ATCTTCGACCTACTCCACTACTGCTTAGAGTGATAGGA-CT--A
1 ATCTTCGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCA
** * * * * *
28972563 ATGGCTTAAATCTGCATCTC-C-ACTGTATT-GGGAAGATAAGATTC-ACC
1 AT--CTTCGATCTGC-TC-CACTACTG-ATTAGGG-TGA-CAGAATCTGCA
28972610 ATCTTCGATCTGCTCCACTACTGCATTAGGGTGACAGAATTCTGCA
1 ATCTTCGATCTGCTCCACTACTG-ATTAGGGTGACAGAA-TCTGCA
* * * *
28972656 ATCTTCAACCTACTCCACTACTGCTTAGGG
1 ATCTTCGATCTGCTCCACTACTGATTAGGG
28972686 AGATTGGACA
Statistics
Matches: 120, Mismatches: 29, Indels: 29
0.67 0.16 0.16
Matches are distributed among these distances:
41 3 0.03
43 16 0.13
44 45 0.38
45 29 0.24
46 25 0.21
47 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (44 bp):
ATCTTCGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCA
Found at i:28973206 original size:44 final size:43
Alignment explanation
Indices: 28973157--28973346 Score: 111
Period size: 44 Copynumber: 4.3 Consensus size: 43
28973147 CTATTACACT
28973157 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTGCTCCACC
1 ACTGCTTAGGGTGACAGAATCT-CAATCTTCAACCTGCTCCACC
* * * * * * *
28973201 ACTGCTTAGGATGATAGGA-CT-AATCGCTTAAACCTGTTTCTCC
1 ACTGCTTAGGGTGACAGAATCTCAAT--CTTCAACCTGCTCCACC
* * * * * * *
28973244 ACTG-TATTGGGATGATAAGATTCATC-ATATTCGATCTGCTCCACT
1 ACTGCT-TAGGG-TGA-CAGAATC-TCAATCTTCAACCTGCTCCACC
* * *
28973289 ACTGTTTAGGGTGACAGAATCTGTAATCTTCAACC-GACTCCACT
1 ACTGCTTAGGGTGACAGAATCT-CAATCTTCAACCTG-CTCCACC
28973333 ACTGCTTAGGGTGA
1 ACTGCTTAGGGTGA
28973347 TAGGACTAAT
Statistics
Matches: 106, Mismatches: 28, Indels: 24
0.67 0.18 0.15
Matches are distributed among these distances:
41 3 0.03
42 2 0.02
43 28 0.26
44 49 0.46
45 19 0.18
46 2 0.02
47 3 0.03
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (43 bp):
ACTGCTTAGGGTGACAGAATCTCAATCTTCAACCTGCTCCACC
Found at i:28973421 original size:132 final size:132
Alignment explanation
Indices: 28971975--28973414 Score: 2162
Period size: 132 Copynumber: 10.9 Consensus size: 132
28971965 NNNNNNNNNN
*
28971975 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTGCTGCTTAGGGTGATAGGACTAATGG
1 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
* * * *
28972040 CTTAAATCTGCTTCTCCACTATATTCGGAAGATAAGATTAACCATCTTTGATCTGCTCCACTACT
66 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
28972105 GA
131 GA
28972107 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
1 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28972172 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
66 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
28972237 GA
131 GA
* *
28972239 TTAGGGTGACAAAATCTACAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
1 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
* * *
28972304 CTGAAATCTGCTTCTCCATTGTATTGGGAAGATAAGATTTACCATCTTCGATCTGCTCCACTACT
66 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
28972369 -A
131 GA
** * *
28972370 TTAAAGTGACAGAATCTGCAATCCTCAACCTACTCCACTACTGCTTAGGGTGATATGACTAATGG
1 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
* *
28972435 GTTAAATCTTCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
66 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
28972500 GA
131 GA
* *
28972502 TTAGGGTGACAGAATCTGCAATCTTCGACCTACTCCACTACTGCTTAGAGTGATAGGACTAATGG
1 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
*
28972567 CTTAAATCTGCATCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
66 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
28972632 GCA
131 G-A
* *
28972635 TTAGGGTGACAGAATTCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATTGGAC-AATG
1 TTAGGGTGACAGAA-TCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
* * * * * * * *
28972699 G-TT-ACTCTAGCTTCTCCACTATCTTGAGAAGATATGTACTTCA-CATCTTCGCTCCG-TACAC
65 GCTTAAATCT-GCTTCTCCACTGTATTGGGAAGATAAG-A-TTCACCATCTTCGATCTGCTCCAC
28972760 TACT-A
127 TACTGA
* *
28972765 CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCTACTACTGCTTAGGATGATAGGACTAATG
1 -TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
* *
28972830 GCTTAAATCTGCTTCTCCACTTTATTGGGGAGATAAGATTCACCATCTTCGATCTGCAT-CACTA
65 GCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTA
*
28972894 CTGG
129 CTGA
* * *
28972898 TTAGGGTGACAGAATCTACAATCTTCAACCGACTCCACTACTGCTTAGGATGATAGGACTAATGG
1 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
* *
28972963 CTTAAATCTGCTTCTCCACAT-TATTGGGAAGATAAGATTCACCATCTTCTATCTGCTCCACTAA
66 CTTAAATCTGCTTCTCCAC-TGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTAC
28973027 TCG-
130 T-GA
* * *
28973030 TTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCAGTACTGCTTACGGTGATAGGACTAATGG
1 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
* * ** *
28973095 CTTAAATCTACTTCTCCACTGTTTTGGGAAGATAAGATTCACCATCTTCGATCTATTACACTACT
66 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
*
28973160 GC
131 GA
* * * *
28973162 TTAGGGTGACAGAATCTGCAATCTTCAACCTGCTCCACCACTGCTTAGGATGATAGGACTAATCG
1 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
* * * * *
28973227 CTTAAACCTGTTTCTCCACTGTATTGGGATGATAAGATTCATCATATTCGATCTGCTCCACTACT
66 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
*
28973292 GT
131 GA
* *
28973294 TTAGGGTGACAGAATCTGTAATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGG
1 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
* * *
28973359 CTTAAATATGCTTCTCTACTGTATTGGGAAGATAAGAATCACCATCTTCGATCTGC
66 CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
28973415 ATCACTATTG
Statistics
Matches: 1182, Mismatches: 107, Indels: 38
0.89 0.08 0.03
Matches are distributed among these distances:
130 46 0.04
131 158 0.13
132 894 0.76
133 39 0.03
134 45 0.04
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
CTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
GA
Found at i:28974187 original size:132 final size:132
Alignment explanation
Indices: 28973853--28974560 Score: 927
Period size: 132 Copynumber: 5.3 Consensus size: 132
28973843 NNNNNNNNNN
*
28973853 ACTCCACTACTGCTTAAGATGATAGGACTAATGGGCTTAAACCTGCTTCTCCACTGTATTGGGAA
1 ACTCCACTACTGCTTAAGGTGATAGGACTAAT-GGCTTAAACCTGCTTCTCCACTGTATTGGGAA
* * *
28973918 AATAAGATTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTGACAGGAATCTGCAATTTTCA
65 GATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACA-GAATCTGCAATCTTCA
28973983 ACCT
129 ACCT
* * * * * *
28973987 ACTCCAGTACTGCTTAAAGTGA-ATGGACAAATCGCTTAAACCTGTTTCTCCACTGTATTGGGAT
1 ACTCCACTACTGCTTAAGGTGATA-GGACTAATGGCTTAAACCTGCTTCTCCACTGTATTGGGAA
* * * *
28974051 GATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAA
65 GATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAA
28974116 CCT
130 CCT
* **
28974119 ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTATTGGGAAG
1 ACTCCACTACTGCTTAAGGTGATAGGACTAATGGCTTAAACCTGCTTCTCCACTGTATTGGGAAG
* * * *
28974184 ATAAGAATCACCATCTTCGATCTGCAT-CACTATTGGTTAAGGTGACAGAATCTGCAATCTTCAA
66 ATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAA
*
28974248 CCC
130 CCT
* *
28974251 ACTCCACTACTGCTTAAGATGATAGGACTAATGGCTTAAACCTGCTTCTCCACTGTATTGGGAAA
1 ACTCCACTACTGCTTAAGGTGATAGGACTAATGGCTTAAACCTGCTTCTCCACTGTATTGGGAAG
* *
28974316 ATAAGATTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCTGCAATTTTCAAC
66 ATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAAC
28974381 CT
131 CT
* * * * * *
28974383 ACTCCAGTACTGCTTAAAGTGA-ATGGACAAATCGCTTAAACCTGTTTCTCCACTGTATTGGGAT
1 ACTCCACTACTGCTTAAGGTGATA-GGACTAATGGCTTAAACCTGCTTCTCCACTGTATTGGGAA
* * *
28974447 GACTTAAACGACTTTCTATCATATTCGATCTGCTCCACTTACTTGGTTTAGGGTGACAGAATCTG
65 GA--T-AA-GA--TTC-ACCATCTTCGATCTGCTCCAC-TAC-T-GCTTAGGGTGACAGAATCTG
*
28974512 TAATCTTCAACCT
120 CAATCTTCAACCT
*
28974525 ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCT
1 ACTCCACTACTGCTTAAGGTGATAGGACTAATGGCT
28974561 NNNNNNNNNN
Statistics
Matches: 496, Mismatches: 62, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
131 2 0.00
132 303 0.61
133 75 0.15
134 27 0.05
135 2 0.00
136 2 0.00
138 3 0.01
139 19 0.04
140 3 0.01
141 1 0.00
142 58 0.12
143 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
ACTCCACTACTGCTTAAGGTGATAGGACTAATGGCTTAAACCTGCTTCTCCACTGTATTGGGAAG
ATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAAC
CT
Found at i:28977570 original size:132 final size:132
Alignment explanation
Indices: 28977333--28978754 Score: 1923
Period size: 132 Copynumber: 10.8 Consensus size: 132
28977323 NNNCATCATA
* *
28977333 TTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* *
28977398 TTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
66 TTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
28977463 TC
131 TC
* * * *
28977465 TTCGATCTGCAT-CACTATTGGTTAAGGTGACAGAATCTGCAATCTTCAACCCACTCCACTACTG
1 TTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTG
* * *
28977529 CTTAAGATGATAGGACTAATGGCTTAAACCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACC
65 CTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACC
28977594 ATC
130 ATC
* * * *
28977597 TTCGATCTGCTCCACTACTCCTTAGGGTGATAGAATCTGCAATTTTCAACCTACTCCAGTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * * * * * *
28977662 TTA-AAGTGA-ATGGACAAATCGCTTAAACCTGTTTCTCCACTGTATTGGGATGATAAGATTCAT
66 TTAGGA-TGATA-GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCAC
*
28977725 CATA
129 CATC
* *
28977729 TTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * * *
28977794 TTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTTTTGGGAAGATAAGAATCACCA
66 TTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
28977859 TC
131 TC
* * * *
28977861 TTCGATCTGCAT-CACTATTGGTTAAGGTGACAGAATCTGCAATCTTCAACCCACTCCACTACTG
1 TTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTG
* * *
28977925 CTTAAGATGATAGGACTAATGGCTTAAACCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACC
65 CTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACC
28977990 ATC
130 ATC
* * *
28977993 TTCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCTGCAATTTTCAACCTACTCCAGTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * * * * *
28978058 TTA-AAGTGA-ATGGACAAATTGCTTAAACCTGTTTCTCCACTGTATTGGGAAGATAAGATTCAT
66 TTAGGA-TGATA-GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCAC
*
28978121 CATA
129 CATC
* * *
28978125 TTCGATCTGCTCCACTACTGTTTAGGGTGATAGAATCTGTAATCTTCAACCTACTCCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* *
28978190 TTAGGGA-GATAGGACTAATGGCTTAAATATGCTTCTCTACTGTATTGGGAAGATAAGATTCACC
66 TTA-GGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACC
*
28978254 GTC
130 ATC
* * * *
28978257 TTTGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCCTAAACCTACTCCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* ** * * * *
28978322 TTAGGGA-GATTGGACTAATGGCTTACTTCTGCTTCTCCACTATCTTGAGAAGATATGATTCACC
66 TTA-GGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACC
28978386 ATC
130 ATC
* * * * *
28978389 TTCGATCCGGTACACTACTACTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCTACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* *
28978454 TTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTTTATTGGGGAGATAAGATTCACCA
66 TTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
28978519 TC
131 TC
* * *
28978521 TTCGATCTGCAT-CACTACTGGTTAGGGTGACAGAATCTACAATCTTCAACCGACTCCACTACTG
1 TTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTG
*
28978585 CTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACAT-TATGGGGAAGATAAGATTCAC
65 CTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCAC-TGTATTGGGAAGATAAGATTCAC
28978649 CATC
129 CATC
* * * *
28978653 TTCGATCTGCTCCACTAAT-CGTTAGGGTGACAGAATCTGTAATCTTCACCCTACTCCAGTACTG
1 TTCGATCTGCTCCACTACTGC-TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTG
* *
28978717 CTTAAGGGTGA-ATGGACTAATGGCTTAAATCTGTTTCT
65 CTT-AGGATGATA-GGACTAATGGCTTAAATCTGCTTCT
28978755 TCNNNNNNNN
Statistics
Matches: 1132, Mismatches: 138, Indels: 39
0.86 0.11 0.03
Matches are distributed among these distances:
131 10 0.01
132 1085 0.96
133 36 0.03
134 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (132 bp):
TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
TTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
TC
Found at i:28978058 original size:396 final size:395
Alignment explanation
Indices: 28977326--28978754 Score: 2174
Period size: 396 Copynumber: 3.6 Consensus size: 395
28977316 NNNNNNNNNN
28977326 CATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCA
1 CATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCA
28977391 CTACTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTATTGGGAAGATAAGA
66 CTACTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTATTGGGAAGATAAGA
28977456 TTCACCATCTTCGATCTGCAT-CACTATTGGTTAAGGTGACAGAATCTGCAATCTTCAACCCACT
131 TTCACCATCTTCGATCTGC-TCCACTATTGGTTAAGGTGACAGAATCTGCAATCTTCAACCCACT
28977520 CCACTACTGCTTAAGATGATAGGACTAATGGCTTAAACCTGCTTCTCCACTGTATTGGGAAAATA
195 CCACTACTGCTTAAGATGATAGGACTAATGGCTTAAACCTGCTTCTCCACTGTATTGGGAAAATA
*
28977585 AGATTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTGATAGAATCTGCAATTTTCAACCTA
260 AGATTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCTGCAATTTTCAACCTA
28977650 CTCCAGTACTGCTTAAAGTGAATGGACAAATCGCTTAAACCTGTTTCTCCACTGTATTGGGATGA
325 CTCCAGTACTGCTTAAAGTGAATGGACAAATCGCTTAAACCTGTTTCTCCACTGTATTGGGA-GA
28977715 TAAGATT
389 TAAGATT
28977722 CATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCA
1 CATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCA
*
28977787 CTACTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTTTTGGGAAGATAAGA
66 CTACTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTATTGGGAAGATAAGA
*
28977852 ATCACCATCTTCGATCTGCAT-CACTATTGGTTAAGGTGACAGAATCTGCAATCTTCAACCCACT
131 TTCACCATCTTCGATCTGC-TCCACTATTGGTTAAGGTGACAGAATCTGCAATCTTCAACCCACT
28977916 CCACTACTGCTTAAGATGATAGGACTAATGGCTTAAACCTGCTTCTCCACTGTATTGGGAAAATA
195 CCACTACTGCTTAAGATGATAGGACTAATGGCTTAAACCTGCTTCTCCACTGTATTGGGAAAATA
28977981 AGATTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCTGCAATTTTCAACCTA
260 AGATTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCTGCAATTTTCAACCTA
*
28978046 CTCCAGTACTGCTTAAAGTGAATGGACAAATTGCTTAAACCTGTTTCTCCACTGTATTGGGAAGA
325 CTCCAGTACTGCTTAAAGTGAATGGACAAATCGCTTAAACCTGTTTCTCCACTGTATTGGG-AGA
28978111 TAAGATT
389 TAAGATT
*
28978118 CATCATATTCGATCTGCTCCACTACTGTTTAGGGTGATAGAATCTGTAATCTTCAACCTACTCCA
1 CATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCA
* *
28978183 CTACTGCTTAGGGAGATAGGACTAATGGCTTAAATATGCTTCTCTACTGTATTGGGAAGATAAGA
66 CTACTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTATTGGGAAGATAAGA
* * * * * * * * *
28978248 TTCACCGTCTTTGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCCTAAACCTACTC
131 TTCACCATCTTCGATCTGCTCCACTATTGGTTAAGGTGACAGAATCTGCAATCTTCAACCCACTC
* * *** * * * *
28978313 CACTACTGCTTAGGGA-GATTGGACTAATGGCTTACTTCTGCTTCTCCACTATCTTGAGAAGATA
196 CACTACTGCTTA-AGATGATAGGACTAATGGCTTAAACCTGCTTCTCCACTGTATTGGGAAAATA
* * * * * *
28978377 TGATTCACCATCTTCGATCCGGTACACTACTACTTAGGGTGACAGAATCTGCAATCTTCAACCTA
260 AGATTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCTGCAATTTTCAACCTA
* * * * * * * *
28978442 CTCTACTACTGCTT-AGGATG-ATAGGACTAATGGCTTAAATCTGCTTCTCCACTTTATTGGGGA
325 CTCCAGTACTGCTTAAAG-TGAAT-GGACAAATCGCTTAAACCTGTTTCTCCACTGTATT-GGGA
28978505 GATAAGATT
387 GATAAGATT
* * * ** *
28978514 CACCATCTTCGATCTGCAT-CACTACTGGTTAGGGTGACAGAATCTACAATCTTCAACCGACTCC
1 CATCATATTCGATCTGC-TCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCC
* * *
28978578 ACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACAT-TATGGGGAAGATAA
65 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCAC-TGTATTGGGAAGATAA
* * * *
28978642 GATTCACCATCTTCGATCTGCTCCACTAATCGTTAGGGTGACAGAATCTGTAATCTTC-ACCCTA
129 GATTCACCATCTTCGATCTGCTCCACTATTGGTTAAGGTGACAGAATCTGCAATCTTCAACCC-A
* * * *
28978706 CTCCAGTACTGCTTAAGGGTGA-ATGGACTAATGGCTTAAATCTGTTTCT
193 CTCCACTACTGCTTAA-GATGATA-GGACTAATGGCTTAAACCTGCTTCT
28978755 TCNNNNNNNN
Statistics
Matches: 951, Mismatches: 70, Indels: 23
0.91 0.07 0.02
Matches are distributed among these distances:
395 8 0.01
396 911 0.96
397 32 0.03
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (395 bp):
CATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCA
CTACTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTATTGGGAAGATAAGA
TTCACCATCTTCGATCTGCTCCACTATTGGTTAAGGTGACAGAATCTGCAATCTTCAACCCACTC
CACTACTGCTTAAGATGATAGGACTAATGGCTTAAACCTGCTTCTCCACTGTATTGGGAAAATAA
GATTCACCATCTTCGATCTGCTCCACTACTCCTTAGGGTGACAGAATCTGCAATTTTCAACCTAC
TCCAGTACTGCTTAAAGTGAATGGACAAATCGCTTAAACCTGTTTCTCCACTGTATTGGGAGATA
AGATT
Found at i:28980072 original size:132 final size:131
Alignment explanation
Indices: 28979830--28980395 Score: 673
Period size: 132 Copynumber: 4.3 Consensus size: 131
28979820 NNNNNNNNNN
* * * * *
28979830 AGATTCATCATATTCGACCTGCTTCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCAA
1 AGATTCACCATCTTCGATCTGC-TCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
* * * * * *
28979895 CTCCACTATGGCTTAAGGAGATAAGACTATTGGCTTAAATTTGCTTCTCCATTGTATTGGGAAGA
65 CTCCACTACGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
28979960 TA
130 TA
* * * * * * * *
28979962 AGATTCATCATATTCGATCTACTCAACTACTGTTTAAGGTGACAAAATCTGTAATCTTGAACCTA
1 AGATTCACCATCTTCGATCTGCTC-ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
* ** * ** *
28980027 CTCCACTACGGCTTTGGGAGATAGGTTTAATGGCTTAAATCTGCTTCTCTACTGTAACGGGTAGA
65 CTCCACTACGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
28980092 TA
130 TA
* *
28980094 AGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCCTCAACCTA
1 AGATTCACCATCTTCGATCTGCT-CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
* * * * * * * * * *
28980159 CTCCAATACTGCGTAGGGAGATTGGACTAATGGCTTACATTTACTTCTCCACTATCTTGAGAAGA
65 CTCCACTACGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
28980224 TA
130 TA
* *
28980226 TGATTCACCATCTTCGATCCGCTGCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
1 AGATTCACCATCTTCGATCTGCT-CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
* * * * *
28980291 CTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAACCTGCTTCTCCATTGTATTGGGAAGA
65 CTCCACTACGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
28980356 TA
130 TA
*
28980358 AGATTTACCATCTTCGATCTGCTCCACTACTGCTTAGG
1 AGATTCACCATCTTCGATCTGCT-CACTACTGCTTAGG
28980396 ATGATAGGAC
Statistics
Matches: 365, Mismatches: 67, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
131 2 0.01
132 362 0.99
133 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (131 bp):
AGATTCACCATCTTCGATCTGCTCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
TCCACTACGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGAT
A
Found at i:28980428 original size:88 final size:88
Alignment explanation
Indices: 28980291--28980477 Score: 286
Period size: 88 Copynumber: 2.1 Consensus size: 88
28980281 CTTCAACCTA
* * *
28980291 CTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAACCTGCTTCTCCATTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGATGATAGGACTAATGACTTAAACCTGCTTCTCCAGTGTATTGAGAAGA
* *
28980356 TAAGATTTACCATCTTCGATCTG
66 TAAGATTCACCATCTTCGATCAG
* *
28980379 CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCAGTGTATTGAGAAGA
1 CTCCACTACTGCTTAGGATGATAGGACTAATGACTTAAACCTGCTTCTCCAGTGTATTGAGAAGA
*
28980444 TAAGATTCCCCATCTTCGATCAG
66 TAAGATTCACCATCTTCGATCAG
28980467 CAT-CACTACTG
1 C-TCCACTACTG
28980478 GTTAAGGTGA
Statistics
Matches: 90, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
88 89 0.99
89 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (88 bp):
CTCCACTACTGCTTAGGATGATAGGACTAATGACTTAAACCTGCTTCTCCAGTGTATTGAGAAGA
TAAGATTCACCATCTTCGATCAG
Found at i:28980569 original size:220 final size:219
Alignment explanation
Indices: 28980159--28980615 Score: 675
Period size: 220 Copynumber: 2.1 Consensus size: 219
28980149 CCTCAACCTA
* * * * * *
28980159 CTCCAATACTGCGTAGGGAGATTGGACTAATGGCTTACATTTACTTCTCCACTATCTTGAGAAGA
1 CTCCACTACTGCTTA-GGAGATAGGACTAATGGCTTAAATCTACTTCTCCACTATATTGAGAAGA
* * *
28980224 TATGATTCACCATCTTCGATCCGCTGCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
65 TAAGATTCACCATCTTCGATCAGCTGCACTACTGCTTAAGGTGACAGAATCTGCAATCTTCAACC
* * *
28980289 TACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAACCTGCTTCTCCATTGTATTGGGAA
130 GACTCCACTACTGCTTAGGATGATAGGACTAATGACTTAAACCTGCTTCTCCACTGTATTGGGAA
*
28980354 GATAAGATTTACCATCTTCGATCTG
195 GATAAGATTCACCATCTTCGATCTG
* * *
28980379 CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCAGTGTATTGAGAAGA
1 CTCCACTACTGCTTAGGA-GATAGGACTAATGGCTTAAATCTACTTCTCCACTATATTGAGAAGA
* *
28980444 TAAGATTCCCCATCTTCGATCAGCAT-CACTACTGGTTAAGGTGACAGAATCTGCAATCTTCAAC
65 TAAGATTCACCATCTTCGATCAGC-TGCACTACTGCTTAAGGTGACAGAATCTGCAATCTTCAAC
* *
28980508 CGACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCCTT-TCCACTGTATTGGG
129 CGACTCCACTACTGCTTAGGATGATAGGACTAATGACTTAAACCTG-CTTCTCCACTGTATTGGG
28980572 AAGATAAGATTCACCATCTTCGATCTG
193 AAGATAAGATTCACCATCTTCGATCTG
*
28980599 CTCCACTACTCCTTAGG
1 CTCCACTACTGCTTAGG
28980616 GTGACAGAAT
Statistics
Matches: 213, Mismatches: 21, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
219 3 0.01
220 206 0.97
221 4 0.02
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (219 bp):
CTCCACTACTGCTTAGGAGATAGGACTAATGGCTTAAATCTACTTCTCCACTATATTGAGAAGAT
AAGATTCACCATCTTCGATCAGCTGCACTACTGCTTAAGGTGACAGAATCTGCAATCTTCAACCG
ACTCCACTACTGCTTAGGATGATAGGACTAATGACTTAAACCTGCTTCTCCACTGTATTGGGAAG
ATAAGATTCACCATCTTCGATCTG
Found at i:28980606 original size:132 final size:132
Alignment explanation
Indices: 28980379--28980631 Score: 411
Period size: 132 Copynumber: 1.9 Consensus size: 132
28980369 CTTCGATCTG
*
28980379 CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCAGTGTATTGAGAAGA
1 CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGAGAAGA
* **
28980444 TAAGATTCCCCATCTTCGATCAGCATCACTACTGGTTAAGGTGACAGAATCTGCAATCTTCAACC
66 TAAGATTCACCATCTTCGATCAGCATCACTACTCCTTAAGGTGACAGAATCTGCAATCTTCAACC
28980509 GA
131 GA
*
28980511 CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCCTT-TCCACTGTATTGGGAAG
1 CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTG-CTTCTCCACTGTATTGAGAAG
* *
28980575 ATAAGATTCACCATCTTCGATCTGC-TCCACTACTCCTTAGGGTGACAGAATCTGCAA
65 ATAAGATTCACCATCTTCGATCAGCAT-CACTACTCCTTAAGGTGACAGAATCTGCAA
28980632 GCTTGCANNN
Statistics
Matches: 112, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
131 1 0.01
132 108 0.96
133 3 0.03
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGAGAAGA
TAAGATTCACCATCTTCGATCAGCATCACTACTCCTTAAGGTGACAGAATCTGCAATCTTCAACC
GA
Found at i:28982060 original size:132 final size:131
Alignment explanation
Indices: 28981808--28982245 Score: 594
Period size: 132 Copynumber: 3.3 Consensus size: 131
28981798 NNNNNNNNAG
* ** * *
28981808 GGTGACAGAATCTAT-AATCTCCAACGAACTCCACTA-TGGCTTAGGGAGATAGGACTAATGGTT
1 GGTGACAGAATCT-TCAATCTTCAACCTACTCCACTACT-GCTTAGGGTGATAGGACTAATGGCT
* * * *
28981871 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCAATCTCCTCCACTATTAC
64 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
28981936 TTA
129 TTA
* * *
28981939 GGTTGATAGAATCTTCAATCCTCAACGTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTT
1 GG-TGACAGAATCTTCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTT
*
28982004 AAATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
65 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
28982069 TA
130 TA
* * * *
28982071 GGGTGACAGAATCTCCAATCTTCAACCTACTCCAGTACTGCTTAGGGTGATAGGATTAATGACTT
1 -GGTGACAGAATCTTCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTT
* * * * * *
28982136 AAATTTGCTTCTCCATTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCAACTACTGTT
65 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
28982201 TAA
130 T-A
28982204 GGTGACAGAATCTGT-AATCTTCAACCTACTCCACTACTGCTT
1 GGTGACAGAATCT-TCAATCTTCAACCTACTCCACTACTGCTT
28982246 CTCTACTGTA
Statistics
Matches: 274, Mismatches: 27, Indels: 11
0.88 0.09 0.04
Matches are distributed among these distances:
131 3 0.01
132 267 0.97
133 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (131 bp):
GGTGACAGAATCTTCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
AATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTT
A
Found at i:28982314 original size:100 final size:100
Alignment explanation
Indices: 28982141--28982345 Score: 284
Period size: 100 Copynumber: 2.0 Consensus size: 100
28982131 GACTTAAATT
* * * * *
28982141 TGCTTCTCCATTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCAACTACTGTTTAAGG
1 TGCTTCTCCACTGTAATGGGAAGATAAGATTCACCATATTCGATCTACTCAACTACTGCTTAAGG
* *
28982206 TGACAGAATCTGTAATCTTCAACCTACTCCACTAC
66 TGACAGAATCTGCAATCCTCAACCTACTCCACTAC
* * * * *
28982241 TGCTTCTCTACTGTAATGGGTAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGG
1 TGCTTCTCCACTGTAATGGGAAGATAAGATTCACCATATTCGATCTACTCAACTACTGCTTAAGG
* *
28982306 TGATAGAATCTGCAATCCTCAACCTACTCCAGTAC
66 TGACAGAATCTGCAATCCTCAACCTACTCCACTAC
28982341 TGCTT
1 TGCTT
28982346 ATGCAGATTG
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
100 91 1.00
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (100 bp):
TGCTTCTCCACTGTAATGGGAAGATAAGATTCACCATATTCGATCTACTCAACTACTGCTTAAGG
TGACAGAATCTGCAATCCTCAACCTACTCCACTAC
Found at i:28982548 original size:363 final size:364
Alignment explanation
Indices: 28981876--28982608 Score: 1135
Period size: 363 Copynumber: 2.0 Consensus size: 364
28981866 TGGTTTAAAT
* * *
28981876 CTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCAATCTCCTCCACTATTACTTAGG
1 CTGCTTCTCCACTGTAATGGGAAGATAAGATTCACCATCTTCAATCTACTCCACTACTACTTAGG
* * * **
28981941 TTGATAGAATCTTCAATCCTCAACGTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
66 GTGATAGAATCTGCAATCCTCAACCTACTCCACTACTGCTTAGGCAGATAGGACTAATGGCTTAA
* * * *
28982006 ATCTGCTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
131 ATATACTTCTCCACTATATTGGGAAGATAAGATTCACAATCTTCGATCTGCTCCACTACTGCATA
* * *
28982071 GGGTGACAGAATCTCCAATCTTCAACCTACTCCAGTACTGCTTAGGGTGATAGGATTAATGACTT
196 GGGTGACAGAATCTCCAATCTTCAACCTACTCCACTACTGATTAGGGTGATAGGACTAATGACTT
** * * **
28982136 AAATTTGCTTCTCCATTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCAACTACTGTT
261 AAACCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGCTCAACTACTGCG
*
28982201 TAAGGTGACAGAATCTGTAATCTTCAACCTACTCCACTA
326 TAAGGTGACAGAATCTGGAATCTTCAACCTACTCCACTA
* * * *
28982240 CTGCTTCTCTACTGTAATGGGTAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGG
1 CTGCTTCTCCACTGTAATGGGAAGATAAGATTCACCATCTTCAATCTACTCCACTACTACTTAGG
* * * *
28982305 GTGATAGAATCTGCAATCCTCAACCTACTCCAGTACTGCTTATGCAGATTGGACTAATGGCTTAC
66 GTGATAGAATCTGCAATCCTCAACCTACTCCACTACTGCTTAGGCAGATAGGACTAATGGCTTAA
* *
28982370 ATATACTTCTCCACTATCTT-GGAAGATATGATTCACAATCTTCGATCTGCTCCACTACTGCATA
131 ATATACTTCTCCACTATATTGGGAAGATAAGATTCACAATCTTCGATCTGCTCCACTACTGCATA
*
28982434 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGATTAGGGTGATAGGACTAATGACTT
196 GGGTGACAGAATCTCCAATCTTCAACCTACTCCACTACTGATTAGGGTGATAGGACTAATGACTT
* *
28982499 AAACCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCG
261 AAACCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGCTCAACTACTGCG
28982564 TAAGGTGACAGAATCTGGAATCTTCAACCTACTCCACTA
326 TAAGGTGACAGAATCTGGAATCTTCAACCTACTCCACTA
*
28982603 CAGCTT
1 CTGCTT
28982609 TGGATGATAG
Statistics
Matches: 333, Mismatches: 36, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
363 202 0.61
364 131 0.39
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.32
Consensus pattern (364 bp):
CTGCTTCTCCACTGTAATGGGAAGATAAGATTCACCATCTTCAATCTACTCCACTACTACTTAGG
GTGATAGAATCTGCAATCCTCAACCTACTCCACTACTGCTTAGGCAGATAGGACTAATGGCTTAA
ATATACTTCTCCACTATATTGGGAAGATAAGATTCACAATCTTCGATCTGCTCCACTACTGCATA
GGGTGACAGAATCTCCAATCTTCAACCTACTCCACTACTGATTAGGGTGATAGGACTAATGACTT
AAACCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTGCTCAACTACTGCG
TAAGGTGACAGAATCTGGAATCTTCAACCTACTCCACTA
Found at i:28982577 original size:132 final size:132
Alignment explanation
Indices: 28982240--28983108 Score: 1170
Period size: 132 Copynumber: 6.6 Consensus size: 132
28982230 TACTCCACTA
* * * *
28982240 CTGCTTCTCTACTGTAATGGGTAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGG
1 CTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGG
* * * * ** * *
28982305 GTGATAGAATCTGCAATCCTCAACCTACTCCAGTACTGCTTATGCAGATTGGACTAATGGCTTAC
66 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
28982370 AT
131 AT
* * * * * * *
28982372 ATACTTCTCCACTATCTT-GGAAGATATGATTCACAATCTTCGATCTGCTCCACTACTGCATAGG
1 CTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGG
* *
28982436 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGATTAGGGTGATAGGACTAATGACTTAA
66 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
*
28982501 AC
131 AT
* *
28982503 CTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCGTAAG
1 CTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGG
* * * * *
28982568 GTGACAGAATCTGGAATCTTCAACCTACTCCACTACAGCTTTGGATGATAGGACTAATGGCTTCA
66 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
28982633 AT
131 AT
* * * * *
28982635 CTGCTTCTCCAGTGTATTGGGAAGATAAGATTCACCATCTTCGATCAGCAT-TACTACTGGTTAA
1 CTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAG
* * *
28982699 GGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGATGATAGGAGTAATGGCTTA
65 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
28982764 AAT
130 AAT
*
28982767 CTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTCCTTAGG
1 CTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGG
* * * *
28982832 GTGACAGAATCTCCAAGCTTCAACCTACTCCAGTACTGCTTAAGGTGA-ATGGACTAATGGCTTA
66 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTA
28982896 AAT
130 AAT
* * * * *
28982899 CTGTTTCTCCACTATATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGG
1 CTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGG
* * **
28982964 GTGACAGAATCTGAAATCTTCAACCTACTCCAGTACTGCTTAACGTGA-ATGGACTAATGGCTTA
66 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAATGGCTTA
28983028 AAT
130 AAT
* * * * * *
28983031 CTGCTTCTCCACTGTATTGGGAAGAGAAGATTCATCATATTCGATCTACTCAACTACTGTTTAGG
1 CTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGG
28983096 GTGACAGAATCTG
66 GTGACAGAATCTG
28983109 TNNNNNNNNN
Statistics
Matches: 656, Mismatches: 77, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
131 113 0.17
132 542 0.83
133 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (132 bp):
CTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGG
GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
AT
Found at i:28984092 original size:132 final size:132
Alignment explanation
Indices: 28983822--28985053 Score: 1638
Period size: 132 Copynumber: 9.3 Consensus size: 132
28983812 NNNNNNNNNN
* *
28983822 TCTGCTTCTCCACCTGTATTGGGAAGAGTAAGATTCACCGTCTTTGATCTACTCCACTACTGCTT
1 TCTGCTTCTCCA-CTGTATTGGGAAGA-TAAGATTCACCATCTTCGATCTACTCCACTACTGCTT
* * *
28983887 AGGGTGACAGAATCTGCAATCCTAAACCTACTCCACTACTGCTTAGGGA-GATTGGACTAATGGC
64 AGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA-GGATGATAGGACTAATGGC
**
28983951 TTACT
128 TTAAA
* * * * * *** * *
28983956 TCTGCTTCTCCACTATCTTGAGAAGATATGATTCACCATCTTTGATCCGGTACACTACTACTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAG
*
28984021 GGTGACAGAATCTGCAATCTTCAACCTACTCTACTACTGCTTAGGATGATAGGACTAATGGCTTA
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTA
28984086 AA
131 AA
* * * *
28984088 TCTGCTTCTCCACTTTATTGGGGAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTGGTTA
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTAC-TCCACTACTGCTTA
* *
28984152 GGGTGACAGAATCTACAATCTTCAACCGACTCCACTACTGCTTAGGATGATAGGACTAATGGCTT
65 GGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTT
28984217 AAA
130 AAA
* *
28984220 TCTGCTTCTCCACAT-TATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTAAT-CGTT
1 TCTGCTTCTCCAC-TGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGC-TT
* *
28984283 AGGGTGACAGAATCTGTAATCTTCAACCTACTCCAGTACTGCTTAAGG-TGA-ATGGACTAATGG
64 AGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT-AGGATGATA-GGACTAATGG
28984346 CTTAAA
127 CTTAAA
* * * * *
28984352 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCAACTACTGTTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAG
* *
28984417 GGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAACG-TGA-ATGGACTAATGGCT
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT-AGGATGATA-GGACTAATGGCT
28984480 TAAA
129 TAAA
* * * * *
28984484 TCTGCTTCTCCACTGTATTGGGAAGAGAAGATTCATCATATTCGATCTACTCAACTACTGTTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAG
* * *
28984549 GGTGACAGAATCTGTAATCTTCAACCCACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTA
28984614 AA
131 AA
* * * * *
28984616 CCTGCTTCTCCACTGTATTAGGAAGATAAGATTAACCATCTTCGATCTGCTCCACTACTACTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAG
* * * *
28984681 GGTGACAGAATCTGCAATCTTGAACCGACTCCACTACTTCTTACGG-TGATAGGACTAACGGCTT
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA-GGATGATAGGACTAATGGCTT
28984745 AAA
130 AAA
* * * *
28984748 TCTACTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTATTACACTACTGCTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAG
* * * *
28984813 GGTGACAGAATCTGCAATCTTCAACCTGCTCCACCACTGCTGAGGATGATAGGACTAATTGCTTA
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTA
28984878 AA
131 AA
* *
28984880 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCGTCTTTGATCTACTCCACTACTGCTTAG
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAG
* * * *
28984945 GGTGACAGAATCTGCAATCCTAAACCTACACCACTACTGCTTAGAGA-GATTGGACTAATGGCTT
66 GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAG-GATGATAGGACTAATGGCTT
**
28985009 ACT
130 AAA
* * * *
28985012 TCTGCTTCTCCACTATCTTGAGAAGATATGATTCACCATCTT
1 TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTT
28985054 TGATNNNNNN
Statistics
Matches: 982, Mismatches: 102, Indels: 30
0.88 0.09 0.03
Matches are distributed among these distances:
131 10 0.01
132 939 0.96
133 21 0.02
134 12 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
TCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAG
GGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGGCTTA
AA
Found at i:28985643 original size:132 final size:132
Alignment explanation
Indices: 28985406--28993069 Score: 8880
Period size: 132 Copynumber: 58.2 Consensus size: 132
28985396 TGGCAGCGAC
* * * * *
28985406 TAAATCTGTTTCTTCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTTCTCCACTACT-C
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * *
28985470 TTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGTTTAGGGTGACAGGACCAATG
66 -TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
28985535 GCT
130 GCT
28985538 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * *
28985603 TTAAGGTGACACAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28985668 CT
131 CT
* * *
28985670 TAAATCTGCTTCTCCAGTGTATTGGGAAGATAAGATTCACCATCTTCGATCAGCAT-TACTACTG
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTG
* * * * * *
28985734 GTTAAGGTGACAGAATCTGCAATCCTAAACCTACTCCACTACTGCTTAGGGAGATTGGACTAATG
65 CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
28985799 GCT
130 GCT
** * * * * * * * * *
28985802 TACTTCTGCTTCTCCACTATCTTGAGAAGATATGATTCACCATCTTTGATCCGGTACACTACTAC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* *
28985867 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCTACTACTGCTTAGGATGATAGGACTAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28985932 CT
131 CT
* *
28985934 TAAATCTGCTTCTCCACTTTATTGGGGAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTG
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTG
* * * *
28985998 GTTAGGGTGACAGAATCTACAATCTTCAACCGACTCCACTACTGCTTAGGATGATAGGACTAAAT
65 CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT-AAT
28986063 GGCT
129 GGCT
*
28986067 TAAATCTGCTTCTCCACAT-TATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTAAT-
1 TAAATCTGCTTCTCCAC-TGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
* * *
28986130 CGTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCAGTACTGCTTAAGGTGA-ATGGACTAA
65 C-TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAA
28986194 TGGCT
128 TGGCT
* * * *
28986199 TAAATCTGTTTCTTCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACT-C
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * * *
28986263 TTTAGGGAGACAGAATCTGTAATCTTCAACCTACTCCACTACTGTTTTGGGTGACAGGACTAATG
66 -TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
28986328 GCT
130 GCT
28986331 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * *
28986396 TTAAGGTGACACAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28986461 CT
131 CT
* * *
28986463 TAAATCTGCTTCTCCAGTGTATTGGGAAGATAAGATTCACCATCTTCGATCAGCAT-TACTACTG
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTG
* * * * *
28986527 GTTAAGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGATGATAGGAGTAATG
65 CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
28986592 GCT
130 GCT
28986595 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * *
28986660 TTAAGGTGACACAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAAGGTGA-ATGGACTAATG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAATG
28986724 GCT
130 GCT
* * * * *
28986727 TAAATCTGTTTCTCCACTATATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGT
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
********************************************************
28986792 TTAGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 TTAGGGTG-ACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
***
28986857 NNN
130 GCT
*****************************************************************
28986860 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
*****************************
28986925 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNC-ACTCCACTACTGCTTAGGGTGATAGGACTAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28986989 CT
131 CT
* *
28986991 TAAA-CTGCTTCTCCACTGTATTAGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTAC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * * *
28987055 TTAGGGTGACAGAATCTGCAATCTTGAACCGACTCCACTACTTCTTACGGTGATAGGACTAACGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28987120 CT
131 CT
* * ** *
28987122 TAAATCTACTTCTCCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTATTACACTACTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * *
28987187 TTAGGGTGACAGAATCTGCAATCTTCAACCTGCTCCACCACTGCTTAGGATGATAGGACTAATTG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28987252 CT
131 CT
* * * *
28987254 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCGTCTTTGATCTACTACACTACTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * *
28987319 TTAGGGTGACAGAATCTGCAATCCTAAACCTACTCCACTACTGCTTAGGGAGATTGGACTAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28987384 CT
131 CT
** * * * * * * * * *
28987386 TACTTCTGCTTCTCCACTATCTTGAGAAGATATGATTCACCATCTTTGATCCGGTACACTACTAC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* *
28987451 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCTACTACTGCTTAGGATGATAGGACTAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28987516 CT
131 CT
* *
28987518 TAAATCTGCTTCTCCACTTTATTGGGGAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTG
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTG
* * * *
28987582 GTTAGGGTGACAGAATCTACAATCTTCAACCGACTCCACTACTGCTTAGGATGATAGGACTAATG
65 CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
28987647 GCT
130 GCT
*
28987650 TAAATCTGCTTCTCCACAT-TATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTAAT-
1 TAAATCTGCTTCTCCAC-TGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
* * *
28987713 CGTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCAGTACTGCTTAAGGTGA-ATGGACTAA
65 C-TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAA
28987777 TGGCT
128 TGGCT
* * * *
28987782 TAAATCTGTTTCTTCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACT-C
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * *
28987846 TTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGTTTTGGGTGACAGGACTAATG
66 -TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
28987911 GCT
130 GCT
28987914 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * *
28987979 TTAAGGTGACACAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGATGATAGGACTAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28988044 CT
131 CT
* * *
28988046 TAAATCTGCTTCTCCAGTGTATTGGGAAGATAAGATTCACCATCTTCGATCAGCAT-TACTACTG
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTG
* * * * *
28988110 GTTAAGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGATGATAGGAGTAATG
65 CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
28988175 GCT
130 GCT
*
28988178 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTCC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * * *
28988243 TTAGGGTGACAGAATCTCCAAGCTTGC-AGCTACTCCAGTACTGCTTAAGGTGA-ATGGACTAAT
66 TTAGGGTGACAGAATCTGCAATCTT-CAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAAT
28988306 GGCT
129 GGCT
* * * * * *
28988310 TAAATCTGTTTCTCCACTATATTGGGAAGATAAGATTCATCATATCCGATCTGCTCCACTACTGT
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * **
28988375 TTAGGGTGACAGAATCTGAAATCTTCAACCTACTCCAGTACTGCTTAACGTGA-ATGGACTAATG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAATG
28988439 GCT
130 GCT
* * * * * *
28988442 TAAATCTGCTTCTCCACTGTATTGGGAAGAGAAGATTCATCATATTCGATCTACTCAACTACTGT
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * *
28988507 TTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGAGATTGGACTAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28988572 CT
131 CT
** * * * * * * * * *
28988574 TACTTCTGCTTCTCCACTATCTTGAGAAGATATGATTCACCATCTTTGATCCGGTACACTACTAC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * *
28988639 TTAGGGTGACAGAATCTGCAATCTTCATCCTACTCTACTACTGCTTAGGATGATAGGACTAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28988704 CT
131 CT
* * *
28988706 AAAATCTGCTTCTCCACTTTATTGGGGAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTG
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTG
* * * *
28988770 GTTAGGGTGACAGAATCTACAATCTTCAACCGACTCCACTACTGCTTAGGATGATAGGACTAATG
65 CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
28988835 GCT
130 GCT
*
28988838 TAAATCTGCTTCTCCACAT-TATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTAAT-
1 TAAATCTGCTTCTCCAC-TGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
* * *
28988901 CGTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCAGTACTGCTTAAGGTGA-ATGGACTAA
65 C-TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATA-GGACTAA
28988965 TGGCT
128 TGGCT
* * * *
28988970 TAAATCTGTTTCTTCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACT-C
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * *
28989034 TTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGTTTTGGGTGACAGGACTAATG
66 -TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
28989099 GCT
130 GCT
28989102 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
*
28989167 TTAAGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28989232 CT
131 CT
* *
28989234 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTATTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
*
28989299 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTTCTTAGGGTGATAGGACTAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28989364 CT
131 CT
* * * * * * * * *
28989366 TATATCTACTTCTCCGCTGTATTAGTAAGATAAGATTCATCATATTCGATCTGCTCCAGTACTGT
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * * * * *
28989431 TTAGGGTGACAAAATCAGCATTCTTTAACCTACTCCACTACTGCTCT-GGGAGATTGGTCTAATG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT-TAGGGTGATAGGACTAATG
28989495 GCT
130 GCT
* * * * * *
28989498 TAAATCTACTTCTCCACTGCATTTGGAAGATAAGGTTCACAATCTTCGATCTACTCCACTACTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * * * *
28989563 TTAGGGTGACAGAATCTCCAATATTCAACCTACTCCACTACAGCATAGGGAGATTGGACTAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28989628 CT
131 CT
* * * * *
28989630 TAAATCTGCTTCTCCACTATCTTGAGAAGATACGATTCACCATCTTCGATCCGCTCCA-TAACTG
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACT-ACTG
* * * * * *
28989694 CTTAGGGTAATAGAATTTACAGTCTTCAACCTACTCCACCACTGCTTAGGGTGATAGGACTAATG
65 CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
*
28989759 GCA
130 GCT
* *
28989762 TAAATCTGCTTCTCCACTGTATTAGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTAC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * * *
28989827 TTAGGGTGACAGAATCTGCAATCTTTAACCGACTCCACTACTTCTTAGGGTGATAGAACTAAGGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28989892 CT
131 CT
* * * * * * *
28989894 TAAATCTGCATCTCCACTGTATTGGGAAAATAAGATTCATCATATTTGATCTGCTTCACTACTGT
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * * * *
28989959 TTAGGGTGACAGAATCTGTAATATTTAACCAACTCCACCA-TGGCTTAGGGAGATAGGACTAATG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTGATAGGACTAATG
28990023 GCT
130 GCT
* *
28990026 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTATTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* *
28990091 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTTCTTATGGTGATAGGACTAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
*
28990156 CA
131 CT
* * * * * *
28990158 TATATCTGCTTCTCCACTGTGTTGGGAAGATAAGATTCATCATATTCGATCTGCTCTACTACTGT
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* ** * * * * *
28990223 TTAGGGTGACAAAATCAACATTCTTTAACCTACTCCACTACTGCTCT-GAGAGATAAGACTAATG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT-TAGGGTGATAGGACTAATG
28990287 GCT
130 GCT
* * *
28990290 TAAATCTACTTCTCCACTGTATTTGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * *
28990355 TTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACAGCTTAGGGAGATTGGACTAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28990420 CT
131 CT
** * * * * *
28990422 TAAATCTGCTTCTTTACTATCTTGGGAAGATAAGATTCACCATCTTCGATCCGCTTCACAACTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * *
28990487 TTAGGGTAACAGAATTTGCAGTCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
*
28990552 CA
131 CT
*
28990554 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCAATACTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * *
28990619 TTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCTACTACT--TTAAGGGTGATAGGACTAATT
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT-AGGGTGATAGGACTAATG
28990682 GCT
130 GCT
* * * * *
28990685 TAAATCTGCTTCTCTACTGTATCGAGAAGATAAGATTCACCATCTTCGATCTTCTCCACTATTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * *
28990750 TTAGGGCGACAGAATCTGCAATCTTCAACTTACTCCACTACTTCTTAGGGTGATAGGACTAATGA
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28990815 CT
131 CT
* * ** ** * *
28990817 TAAATTTGCTTCACCACTGTATTGGGAAGATAAGATTCGTCATAGTCGATCTGCACCACTACTGT
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * * ** *
28990882 TTAGGGTGACAAAATCTACAATTTTTAACCTACTCCACTACTGCTCGGGGAGATAGGACTAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28990947 CT
131 CT
* * * *
28990949 TAAATCTACTTCTCCACAGTATTTGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
** * * * * * *
28991014 TTTTGGTGATAGAATCTGCAATCTTCAACCTACTCCACTGCAGCTTAGGGAGATTGGACTAATTG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
*
28991079 CA
131 CT
* * * * * * *
28991081 TAAATCTGATTCTCCACTATCTTGAGAGGATAAGATTCACCATCTTCGATCCGCTCCACAACTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
*
28991146 TTAGGGTAACAGAATCTGCAAT-TCTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
66 TTAGGGTGACAGAATCTGCAATCT-TCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
28991210 GCT
130 GCT
* * *
28991213 TAAATATGCTTCTCCACTGTATTGGGAAGATAAGATTCACAATCTTCGATCTGCTCCACTACTAC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * *
28991278 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACCAGTGTTTAGGGTGGTAGGACTAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28991343 CT
131 CT
* * * *
28991345 TAAATCTACTTCTCCACTGTTTTGGCAAGATAAGATTCACCATCTTCGATCTGCTGCACTACAT-
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTAC-TG
* * * *
28991409 CTTAGGGTGACAGAATCTGCAATCTTCAGCCTACTCTACTACTGCATAGGGAGATAGGACTAATG
65 CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
28991474 GCT
130 GCT
* *
28991477 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTATTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * ** * *
28991542 TTAGGCTGACAGAATCTGTAATCATCTGCCTACTCCACTACTGCTAAGGGTGATAGGACTAATTG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28991607 CT
131 CT
* * * *
28991609 TAAATCTGCTTCTCCACTATATTGGAAAGATAAGATTCACCATCTTCGATCTCCTCCACTATTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
*
28991674 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTTCTTAGGGTGATAGGACTAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28991739 CT
131 CT
* * * * * *
28991741 TACATCTGCTTCTCCACTGTATTGAGAAGATAAGATTCATCATATTCGATCTGTTCCACTACTGT
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * * * * * *
28991806 TTAGGGTGACAAAATCAGCATTCTTTAACCTACTCCACAACTGCTCT-GGGAGATTGGTCTAATG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT-TAGGGTGATAGGACTAATG
28991870 GCT
130 GCT
* * *
28991873 TGAATCTACTTCTCCACTGTATTTGGAAGATAAGATTCA-C--C-T--A----CTCCACTACTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * ** *
28991928 TTTGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACAGCTTAGGCAGATTGGA-TAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28991992 CT
131 CT
* * * * * * * *
28991994 TAAATCTGCTTCTCTACTATCTTGAGAAGATAAGATTCACAATCTTCGATCCGCTCGACAACTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * * *
28992059 TTAGGGTAACCA-AATTTACAGTCTTCAACCTACTCCACTACAGCTTAGGGTGATAGGACTAATG
66 TTAGGGTGA-CAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
*
28992123 GCG
130 GCT
*
28992126 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCAATACTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * * *
28992191 -TAGGGTGACAGAATCTGCAATCTTCAGCCTAATCCAGTACTGCTGAGGGTGATAGGACTAATTG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28992255 CT
131 CT
* * * * * * * * *
28992257 TACATCTGCTCCTCCACTGTAATGGGAAGATAAGTTTCACCATCTTCAATCTTCTCCGCTATTAC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * * * * *
28992322 TTAGGCTGACAGAATCTGTAATCTTCAACTTACTCCACTACTTCTTATGTTGATAGGACTAGTGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28992387 CT
131 CT
* * * ** * *
28992389 TAAATATGCTTCTCCACTTTATTGGGAAGATAAGATTCATCATAGTCGATCTGCACCACTACTGT
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * *
28992454 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACGAGTGCTTAGGGTGGTAGGAATAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28992519 CT
131 CT
* * *
28992521 TAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTCCTGCACTACAT-
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTAC-TG
* * * *
28992585 CTTAGGGTGACAAAATCTGCAATCTTCAGCCTACTCCACTACTGCTAAGGGAGATAGGACTAATG
65 CTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATG
28992650 GCT
130 GCT
* *
28992653 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTCCTCCACTATTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* *
28992718 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTTCTTAGGGTGATAGGACTAATTG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28992783 CT
131 CT
* * * * *
28992785 TATATCTGCTTCTCCGCTGTATTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGT
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * * * * *
28992850 TTAGGGTGACAAAAT-TAGCATTCTTTAACCTACTCCACTACTGCTCT-GGGAGATTGGTCTAAT
66 TTAGGGTGACAGAATCT-GCAATCTTCAACCTACTCCACTACTGCT-TAGGGTGATAGGACTAAT
28992913 GGCT
129 GGCT
* * *
28992917 TGAATCTACTTCTCCACTGTATTTGGAAGATAAGATTCA-C--C-T--A----CTCCACTACTGC
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
* * ** *
28992972 TTTGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACAGCTTAGGCAGATTGGA-TAATGG
66 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
28993036 CT
131 CT
* * * *
28993038 TAAATCTGCTTCTCTACTATCTTGAGAAGATA
1 TAAATCTGCTTCTCCACTGTATTGGGAAGATA
28993070 NNNNNNNNNN
Statistics
Matches: 6359, Mismatches: 1095, Indels: 167
0.83 0.14 0.02
Matches are distributed among these distances:
121 75 0.01
122 115 0.02
123 1 0.00
124 1 0.00
125 1 0.00
126 2 0.00
127 1 0.00
128 2 0.00
130 5 0.00
131 340 0.05
132 5672 0.89
133 143 0.02
134 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.31
Consensus pattern (132 bp):
TAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC
TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
CT
Found at i:28993502 original size:132 final size:131
Alignment explanation
Indices: 28993215--28993582 Score: 412
Period size: 132 Copynumber: 2.8 Consensus size: 131
28993205 NNNNNNNNCT
* * * * * *
28993215 TCGATCTGCTCCAATACTGCTAGGGTGACAGAATCTGCAATCTTCAGCCTAATCCAGTACTGCTG
1 TCGATCTGCTCCACTACTGTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT
* * * * *
28993280 AGGGTGATAGGACTAATTGCTTACATCTGCTCCTCCACTGTAATGGGAAGATAAGTTTCACCATC
66 AGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTAATGGGAAGATAAGATTCACCATA
*
28993345 T
131 G
* * * * * * * * *
28993346 TCAATCTTCTCCGCTATTACTTAGGCTGACAGAATCTGTAATCTTCAACTTACTCCACTACTTCT
1 TCGATCTGCTCCACTACT-GTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT
* * * * * * *
28993411 TATGTTGATAGGACTAGTGGCTTAAATATGCTTCTCCACTTTATTGGGAAGATAAGATTCATCAT
65 TAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTAATGGGAAGATAAGATTCACCAT
28993476 AG
130 AG
* * *
28993478 TCGATCTGCACCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACGAGTGCT
1 TCGATCTGCTCCACTACTG-TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT
* * *
28993543 TAGGGTGGTAGGAATAATGGCTTAAATCTACTTCTCCACT
65 TAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
28993583 NNNNNNNNNN
Statistics
Matches: 188, Mismatches: 47, Indels: 3
0.79 0.20 0.01
Matches are distributed among these distances:
131 13 0.07
132 175 0.93
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.32
Consensus pattern (131 bp):
TCGATCTGCTCCACTACTGTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT
AGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTAATGGGAAGATAAGATTCACCATA
G
Found at i:28998607 original size:132 final size:132
Alignment explanation
Indices: 28998371--28998985 Score: 815
Period size: 132 Copynumber: 4.7 Consensus size: 132
28998361 NNNNNNNNGT
* *
28998371 GATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACTATCTTCGA
1 GATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATATTCGA
* * * * * *
28998436 TCTACTCCACTACCGCTTAAGGTGACAGAATCTGCAATCTTTAACCTACACCACTACTACTTAGG
66 TCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG
*
28998501 GT
131 GA
* *
28998503 GATAT-GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCATCATATTTG
1 GAT-TGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATATTCG
* ** * *
28998567 ATCTGCGT-CACTACTGTTTAGGGTGACAGAATCTATAATCTTCAACCAATTCCACTA-TGGCTT
65 ATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTT
28998630 AGGGA
128 AGGGA
* * *
28998635 GATTGGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAACAAGATTCACCATCTTCGA
1 GATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATATTCGA
** * *
28998700 TCTATTCCAATACTGCTTAGGGTGACAGAATTTGCAATCTTCAACCTACTCCACTACTGCTTAGG
66 TCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG
28998765 GA
131 GA
* * * **
28998767 GATTGGACTAATAGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAGGATTCACCATCGTCGA
1 GATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATATTCGA
*
28998832 TCTGCTCCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG
66 TCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG
*
28998897 GT
131 GA
* * * * * * *
28998899 GATAGGACTAATGACTTAAATCTACTTCTCCACTGTACTGGGCAGAA-AACATTCACCATCTTCG
1 GATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGG-AAAATAAGATTCACCATATTCG
* *
28998963 ATCTGCTCCACTATTACTTAGGG
65 ATCTGCTCCACTACTGCTTAGGG
28998986 AGATAGGACC
Statistics
Matches: 421, Mismatches: 55, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
131 3 0.01
132 413 0.98
133 5 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (132 bp):
GATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATATTCGA
TCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG
GA
Found at i:28998960 original size:88 final size:88
Alignment explanation
Indices: 28998868--28999076 Score: 233
Period size: 88 Copynumber: 2.4 Consensus size: 88
28998858 AGAATCTGCA
* * * *
28998868 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT-GACTTAAATCTACTTCTCCAC
1 ATCTTCGATCTACTCCACTACTGCTTAGGGTGATAGGACCAATAG-CTTAAATCTACATCTCCAC
* *
28998932 TGTACTGGGCAGAAAACATTCACC
65 TATACTGGGAAGAAAACATTCACC
* * * * * *
28998956 ATCTTCGATCTGCTCCACTATTACTTAGGGAGATAGGACCAATAGCTTAAATCTGCATCTTCACT
1 ATCTTCGATCTACTCCACTACTGCTTAGGGTGATAGGACCAATAGCTTAAATCTACATCTCCACT
* * *
28999021 ATATTGGGAAGATAAGATTCACC
66 ATACTGGGAAGAAAACATTCACC
* *
28999044 ATCTTCGATCTCCAT-CACTACTGGTTAGGGTGA
1 ATCTTCGATCTAC-TCCACTACTGCTTAGGGTGA
28999077 CAGAATCTGC
Statistics
Matches: 99, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
88 97 0.98
89 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (88 bp):
ATCTTCGATCTACTCCACTACTGCTTAGGGTGATAGGACCAATAGCTTAAATCTACATCTCCACT
ATACTGGGAAGAAAACATTCACC
Found at i:28999042 original size:220 final size:220
Alignment explanation
Indices: 28998748--28999205 Score: 702
Period size: 220 Copynumber: 2.1 Consensus size: 220
28998738 CTTCAACCTA
* * * *
28998748 CTCCACTACTGCTTAGGGAGATTGGACTAATAGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGGAGATAGGACCAATAGCTTAAATCTGCATCTCCACTATATTGGGAAGA
* * * *
28998813 TAGGATTCACCATCGTCGATCTGC-TCCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAAC
66 TAAGATTCACCATCGTCGATCTCCAT-CACTACTGGTTAGGGTGACAGAATCTGCAATCTTAAAC
* * *
28998877 CTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTACTTCTCCACTGTACTGGGC
130 CGACTCCACTACTGCTTAGGATGATAGGACTAATGACTTAAATCTACTTCTCCACTGTACTGGGA
*
28998942 AGAAAACATTCACCATCTTCGATCTG
195 AGAAAACATTCACCAACTTCGATCTG
* * *
28998968 CTCCACTATTACTTAGGGAGATAGGACCAATAGCTTAAATCTGCATCTTCACTATATTGGGAAGA
1 CTCCACTACTGCTTAGGGAGATAGGACCAATAGCTTAAATCTGCATCTCCACTATATTGGGAAGA
*
28999033 TAAGATTCACCATCTTCGATCTCCATCACTACTGGTTAGGGTGACAGAATCTGCAATCTTAAACC
66 TAAGATTCACCATCGTCGATCTCCATCACTACTGGTTAGGGTGACAGAATCTGCAATCTTAAACC
* * * *
28999098 GACTCCACTACTTCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAA
131 GACTCCACTACTGCTTAGGATGATAGGACTAATGACTTAAATCTACTTCTCCACTGTACTGGGAA
* *
28999163 GATAAGATTCACCAACTTCGATCTG
196 GAAAACATTCACCAACTTCGATCTG
28999188 CTCCACTACTGCTTAGGG
1 CTCCACTACTGCTTAGGG
28999206 TGACAGAATC
Statistics
Matches: 213, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
220 212 1.00
221 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (220 bp):
CTCCACTACTGCTTAGGGAGATAGGACCAATAGCTTAAATCTGCATCTCCACTATATTGGGAAGA
TAAGATTCACCATCGTCGATCTCCATCACTACTGGTTAGGGTGACAGAATCTGCAATCTTAAACC
GACTCCACTACTGCTTAGGATGATAGGACTAATGACTTAAATCTACTTCTCCACTGTACTGGGAA
GAAAACATTCACCAACTTCGATCTG
Found at i:28999130 original size:352 final size:352
Alignment explanation
Indices: 28998617--28999337 Score: 1074
Period size: 352 Copynumber: 2.0 Consensus size: 352
28998607 TTCAACCAAT
* * * * *
28998617 TCCACTATGGCTTAGGGAGATTGGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAAC
1 TCCACTATTGCTTAGGGAGATAGGACAAATAGCTTAAATCTGCATCTCCACTATATTGGGAAAAC
* * *
28998682 AAGATTCACCATCTTCGATCTATTCCAATACTGCTTAGGGTGACAGAATTTGCAATCTTCAACCT
66 AAGATTCACCATCTTCGATCTATTCCAATACTGCTTAGGGTGACAGAATCTGCAATCTTAAACCG
*
28998747 ACTCCACTACTGCTTAGGGAGATTGGACTAATAGCTTAAATCTGCTTCTCCACTGTATTGGGAAG
131 ACTCCACTACTGCTTAGGGAGATAGGACTAATAGCTTAAATCTGCTTCTCCACTGTATTGGGAAG
* * * *
28998812 ATAGGATTCACCATCGTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAAC
196 ATAAGATTCACCAACGTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAAC
*
28998877 CTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCT-ACTTCTCCACTGTACTGGG
261 CTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGA-TTCTCCACTATACTGGG
28998941 CA-GAAAACATTCACCATCTTCGATCTGC
325 -ATGAAAACATTCACCATCTTCGATCTGC
* * * * *
28998969 TCCACTATTACTTAGGGAGATAGGACCAATAGCTTAAATCTGCATCTTCACTATATTGGGAAGAT
1 TCCACTATTGCTTAGGGAGATAGGACAAATAGCTTAAATCTGCATCTCCACTATATTGGGAAAAC
* *
28999034 AAGATTCACCATCTTCGATCTCCA-T-CACTACTGGTTAGGGTGACAGAATCTGCAATCTTAAAC
66 AAGATTCACCATCTTCGATCT--ATTCCAATACTGCTTAGGGTGACAGAATCTGCAATCTTAAAC
* *
28999097 CGACTCCACTACTTCTTA-GGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGG
129 CGACTCCACTACTGCTTAGGGA-GATAGGACTAATAGCTTAAATCTGCTTCTCCACTGTATTGGG
*
28999161 AAGATAAGATTCACCAACTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTACAATCTTC
193 AAGATAAGATTCACCAACGTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTACAATCTTC
* * *
28999226 AACCTACTCCAGTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGATTCTCCACTATATTG
258 AACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGATTCTCCACTATACTG
* * *
28999291 GGATGATAAGATTTACCATCTTCGATCTGC
323 GGATGAAAACATTCACCATCTTCGATCTGC
* *
28999321 TTCACTACTGCTTAGGG
1 TCCACTATTGCTTAGGG
28999338 TGACAGAATC
Statistics
Matches: 331, Mismatches: 33, Indels: 10
0.89 0.09 0.03
Matches are distributed among these distances:
351 4 0.01
352 324 0.98
353 2 0.01
354 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (352 bp):
TCCACTATTGCTTAGGGAGATAGGACAAATAGCTTAAATCTGCATCTCCACTATATTGGGAAAAC
AAGATTCACCATCTTCGATCTATTCCAATACTGCTTAGGGTGACAGAATCTGCAATCTTAAACCG
ACTCCACTACTGCTTAGGGAGATAGGACTAATAGCTTAAATCTGCTTCTCCACTGTATTGGGAAG
ATAAGATTCACCAACGTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAAC
CTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGATTCTCCACTATACTGGGA
TGAAAACATTCACCATCTTCGATCTGC
Found at i:28999195 original size:132 final size:132
Alignment explanation
Indices: 28998968--29000484 Score: 2019
Period size: 132 Copynumber: 11.5 Consensus size: 132
28998958 CTTCGATCTG
* * * * * * *
28998968 CTCCACTATTACTTAGGGA-GATAGGACCAATAGCTTAAATCTGCATCTTCACTATATTGGGAAG
1 CTCCACTACTGCTTA-GGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAG
* * *
28999032 ATAAGATTCACCATCTTCGATCTCCAT-CACTACTGGTTAGGGTGACAGAATCTGCAATCTTAAA
65 ATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAA
*
28999096 CCGA
129 CCTA
*
28999100 CTCCACTACTTCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* *
28999165 TAAGATTCACCAACTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
28999230 TA
131 TA
* * * * *
28999232 CTCCAGTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGATTCTCCACTATATTGGGATGA
1 CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* *
28999297 TAAGATTTACCATCTTCGATCTGCTTCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
28999362 TA
131 TA
* * * * * * *
28999364 CTCCAGTACTGCTTAGGGTGATAGGACTAGTGGCTTAAATTTGCTTGTCCACTATATTGGAAAGA
1 CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* ** *
28999429 TAAGATTCACCATCTTGGATCTTATCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTGAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
*
28999494 AA
131 TA
* * *
28999496 CTCCACTACTGCTTAGGGA-GATAGGACCAATGACTTAAATCCGCTTCTCCACTGTATTGGGAAG
1 CTCCACTACTGCTTA-GGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAG
* * * *
28999560 ATAAGATTCACCATCTTCGATCTACTCCATTACTGCTTAGGGTGACAAAATCTTCAATCTTCAAC
65 ATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAAC
28999625 CTA
130 CTA
* * * * * *
28999628 CTCCACTACTGCTTAGAGA-GATTGAACTAATGGCTTACATCTGCTTCTCCACTATCTTGAGAAG
1 CTCCACTACTGCTTAG-GATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAG
* * * * * *
28999692 ATATGATTCACCATCCTCGATCCGCTGCACAACTGCTTAGGGTGACAGAATTTGCAATCTTCAAC
65 ATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAAC
28999757 CTA
130 CTA
* * *
28999760 CTCCACTATTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * * * * * * *
28999825 TAATATTCATCATATTCGATCTGCTCCACAACTGTTTAGGGTAACAGAATCTGTAATCTTTAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
28999890 TA
131 TA
* * * * *
28999892 CTACACTACTGCTTTGGGA-GATAGGTCCAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAG
1 CTCCACTACTGC-TTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAG
* * * *
28999956 CTAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAGTCTGCAAACTTCAAC
65 ATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAAC
29000021 CTA
130 CTA
* * * * *
29000024 CTCCGCTACTGCTTAGGGTGATAGGCCTAATGGCTTAAATCTGCTTCTCCACTATATTGGGGAGA
1 CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * *
29000089 TAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAG-ATCTGCAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
29000153 TA
131 TA
* * *
29000155 CTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTACTTCTCCACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * *
29000220 AAACATTCACCATCTTCGATATGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTT-AGAC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCA-AC
29000284 CTA
130 CTA
* * **
29000287 CTCCACTATTACTTAGGGA-GATAGGACCGATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAG
1 CTCCACTACTGCTTA-GGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAG
*
29000351 ATAAGATTCACCATCTTCGATCTCCAT-CACTACTAG-TTAGGGTGACAGAATCTGCAATCTTCA
65 ATAAGATTCACCATCTTCGATCTGC-TCCACTACT-GCTTAGGGTGACAGAATCTGCAATCTTCA
*
29000414 ACCGA
128 ACCTA
* * * *
29000419 CTCCACTACTGCTTAGGATAATAAGAGTAATGGCTTAAATCTGCTTCTCCACTGTATAGGGAAGA
1 CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
29000484 T
66 T
29000485 NNNNNNNNNN
Statistics
Matches: 1209, Mismatches: 162, Indels: 28
0.86 0.12 0.02
Matches are distributed among these distances:
131 131 0.11
132 1067 0.88
133 11 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (132 bp):
CTCCACTACTGCTTAGGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
TA
Found at i:28999251 original size:44 final size:44
Alignment explanation
Indices: 28999188--28999384 Score: 147
Period size: 44 Copynumber: 4.5 Consensus size: 44
28999178 CTTCGATCTG
28999188 CTCCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTA
* * * * *
28999232 CTCCAGTACTGCTTAGGGTGATAGGA-CT--AATGGCTTAAATCTGA
1 CTCCACTACTGCTTAGGGTGACAGAATCTACAAT--CTTCAACCT-A
* * * * * * *
28999276 TTCTCCACTA-T-ATT-GGGATGATA-AGATTTACCATCTTCGATCTG
1 --CTCCACTACTGCTTAGGG-TGACAGA-ATCTACAATCTTCAACCTA
* *
28999320 CTTCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTA
*
28999364 CTCCAGTACTGCTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGA
28999385 TAGGACTAGT
Statistics
Matches: 115, Mismatches: 24, Indels: 28
0.69 0.14 0.17
Matches are distributed among these distances:
41 3 0.03
42 7 0.06
43 13 0.11
44 70 0.61
45 13 0.11
46 7 0.06
47 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTA
Found at i:28999339 original size:88 final size:87
Alignment explanation
Indices: 28998883--28999340 Score: 215
Period size: 88 Copynumber: 5.2 Consensus size: 87
28998873 CAACCTACTC
* * * *
28998883 CACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCT-ACTTCTCCACTGTACTGGGCA-GAA
1 CACTACTGCTTAGGGTGATAGGACTAATAACTTAAATCTGA--TCTCCACTATATTGGG-ATGAT
* * *
28998946 AACATTCACCATCTTCGATCTGCTC
63 AAGATTTACCATCTTCGATCTGCTT
* * * * * * *
28998971 CACTATTACTTAGGGAGATAGGACCAATAGCTTAAATCTGCATCTTCACTATATTGGGAAGATAA
1 CACTACTGCTTAGGGTGATAGGACTAATAACTTAAATCTG-ATCTCCACTATATTGGGATGATAA
* * *
28999036 GATTCACCATCTTCGATCTCCAT
65 GATTTACCATCTTCGATCTGCTT
* * * * * *
28999059 CACTACTGGTTAGGGTGACAGAATCTGCAAT--CTTAAA-CCGA-CTCCACTACTTCTTAGGATG
1 CACTACTGCTTAGGGTGATAGGA-CT--AATAACTTAAATCTGATCTCCACTA--TATTGGGATG
* * **
28999120 ATAGGA-CTA--ATGGCTTAAATCTGCTT
61 ATAAGATTTACCAT--CTTCGATCTGCTT
* * * * * * ** ** *
28999146 CTCCACTG-TATTGGGAAGATAAGATTCACCAACTTCGATCTG--CTCCACTACTGCTTAGGG-T
1 CACTACTGCT-TAGGG-TGATAGGACT-AATAACTTAAATCTGATCTCCACTA-T-ATT-GGGAT
* * * * * * *
28999207 GA-CAGAATCTACAATCTTCAACCTACTC
60 GATAAG-ATTTACCATCTTCGATCTGCTT
* **
28999235 CAGTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGATTCTCCACTATATTGGGATGATAA
1 CACTACTGCTTAGGGTGATAGGACTAATAACTTAAATCTGA-TCTCCACTATATTGGGATGATAA
28999300 GATTTACCATCTTCGATCTGCTT
65 GATTTACCATCTTCGATCTGCTT
28999323 CACTACTGCTTAGGGTGA
1 CACTACTGCTTAGGGTGA
28999341 CAGAATCTGC
Statistics
Matches: 267, Mismatches: 76, Indels: 54
0.67 0.19 0.14
Matches are distributed among these distances:
85 2 0.01
86 10 0.04
87 37 0.14
88 168 0.63
89 35 0.13
90 10 0.04
91 5 0.02
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (87 bp):
CACTACTGCTTAGGGTGATAGGACTAATAACTTAAATCTGATCTCCACTATATTGGGATGATAAG
ATTTACCATCTTCGATCTGCTT
Found at i:28999403 original size:484 final size:484
Alignment explanation
Indices: 28998486--28999469 Score: 1405
Period size: 484 Copynumber: 2.0 Consensus size: 484
28998476 TTAACCTACA
* * * * * *
28998486 CCACTACTACTTAGGGTGATATGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATA
1 CCACTACTACTTAGGGAGATAGGACCAATAGCTTAAATCTGCATCTCCACTATATTGGGAAAATA
* * * * * * *
28998551 AGATTCATCATATTTGATCTGCGTCACTACTGTTTAGGGTGACAGAATCTATAATCTTCAACCAA
66 AGATTCACCATATTCGATCTCCATCACTACTGGTTAGGGTGACAGAATCTACAATCTTAAACCAA
* *
28998616 TTCCACTATGGCTTAGGGAGATTGGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAA
131 CTCCACTATGGCTTAGGGAGATAGGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAA
* * * *
28998681 CAAGATTCACCATCTTCGATCTATTCCAATACTGCTTAGGGTGACAGAATTTGCAATCTTCAACC
196 CAAGATTCACCAACTTCGATCTACTCCAATACTGCTTAGGGTGACAGAATCTACAATCTTCAACC
* * *
28998746 TACTCCACTACTGCTTAGGGAGATTGGACTAATAGCTTAAATCTGCTTCTCCACTGTATTGGGAA
261 TACTCCACTACTGCTTAGGGAGATAGGACTAATAGCTTAAATCTGATTCTCCACTATATTGGGAA
* *
28998811 GATAGGATTCACCATCGTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAA
326 GATAAGATTCACCATCGTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAA
* *
28998876 CCTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTACTTCTCCACTGTACTGGG
391 CCTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTACTTCTCCACTATACTGGA
* *
28998941 CAGAAAACATTCACCATCTTCGATCTGCT
456 AAGAAAACATTCACCATCTTCGATCTGAT
* * *
28998970 CCACTATTACTTAGGGAGATAGGACCAATAGCTTAAATCTGCATCTTCACTATATTGGGAAGATA
1 CCACTACTACTTAGGGAGATAGGACCAATAGCTTAAATCTGCATCTCCACTATATTGGGAAAATA
* * *
28999035 AGATTCACCATCTTCGATCTCCATCACTACTGGTTAGGGTGACAGAATCTGCAATCTTAAACCGA
66 AGATTCACCATATTCGATCTCCATCACTACTGGTTAGGGTGACAGAATCTACAATCTTAAACCAA
* *
28999100 CTCCACTACT-TCTTA-GGATGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAA
131 CTCCACTA-TGGCTTAGGGA-GATAGGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAA
* * * *
28999163 GATAAGATTCACCAACTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAA
194 AACAAGATTCACCAACTTCGATCTACTCCAATACTGCTTAGGGTGACAGAATCTACAATCTTCAA
* * *
28999228 CCTACTCCAGTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGATTCTCCACTATATTGGG
259 CCTACTCCACTACTGCTTAGGGAGATAGGACTAATAGCTTAAATCTGATTCTCCACTATATTGGG
* * * *
28999293 ATGATAAGATTTACCATCTTCGATCTGCTTCACTACTGCTTAGGGTGACAGAATCTGCAATCTTC
324 AAGATAAGATTCACCATCGTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTC
* * * * * * *
28999358 AACCTACTCCAGTACTGCTTAGGGTGATAGGACTAGTGGCTTAAATTTGCTTGTCCACTATATTG
389 AACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTACTTCTCCACTATACTG
* * * *
28999423 GAAAGATAAGATTCACCATCTTGGATCTTAT
454 GAAAGAAAACATTCACCATCTTCGATCTGAT
*
28999454 CCACTACTGCTTAGGG
1 CCACTACTACTTAGGG
28999470 TGACAGAATC
Statistics
Matches: 438, Mismatches: 60, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
483 3 0.01
484 434 0.99
485 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (484 bp):
CCACTACTACTTAGGGAGATAGGACCAATAGCTTAAATCTGCATCTCCACTATATTGGGAAAATA
AGATTCACCATATTCGATCTCCATCACTACTGGTTAGGGTGACAGAATCTACAATCTTAAACCAA
CTCCACTATGGCTTAGGGAGATAGGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAA
CAAGATTCACCAACTTCGATCTACTCCAATACTGCTTAGGGTGACAGAATCTACAATCTTCAACC
TACTCCACTACTGCTTAGGGAGATAGGACTAATAGCTTAAATCTGATTCTCCACTATATTGGGAA
GATAAGATTCACCATCGTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAA
CCTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTACTTCTCCACTATACTGGA
AAGAAAACATTCACCATCTTCGATCTGAT
Found at i:28999571 original size:616 final size:616
Alignment explanation
Indices: 28998375--28999588 Score: 1781
Period size: 616 Copynumber: 2.0 Consensus size: 616
28998365 NNNNGTGATT
* * * * *
28998375 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACTATCTTCGATCTA
1 GGACCAATAGCTTAAATCTGCATCTCCACTATATTGGGAAAATAAGATTCACCATCTTCGATCTA
* * *
28998440 CTCCACTACCGCTTAAGGTGACAGAATCTGCAATCTTTAACCTACACCACTACTACTTAGGGTGA
66 CTCCACTACCGCTTAAGGTGACAGAATCTGCAATCTTAAACCGACACCACTACTACTTAGGATGA
* * *
28998505 TATGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCATCATATTTGATC
131 TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATATTCGATC
* * *
28998570 TGCGTCACTACTGTTTAGGGTGACAGAATCTATAATCTTCAACCAATTCCACTATGGCTTAGGGA
196 TGCGTCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCAACTCCACTATGGCTTAGGGA
* * *
28998635 GATTGGACAAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAACAAGATTCACCATCTTCGA
261 GATAGGACAAATGGCTTAAATCTGATTCTCCACTATATTGGGAAAACAAGATTCACCATCTTCGA
*
28998700 TCTATTCCAATACTGCTTAGGGTGACAGAATTTGCAATCTTCAACCTACTCCACTACTGCTTAGG
326 TCTATTCCAATACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG
* * * *
28998765 GAGATTGGACTAATAGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAGGATTCACCATCGTC
391 GAGATAGGACTAATAGCTTAAATCTGCTTCTCCACTATATTGGAAAGATAAGATTCACCATCGTC
* * *
28998830 GATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
456 GATCTGATCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCAACTCCACTACTGCTTA
* * * *
28998895 GGGTGATAGGACTAATGACTTAAATCTACTTCTCCACTGTACTGGGCAGAAAACATTCACCATCT
521 GGGAGATAGGACCAATGACTTAAATCCACTTCTCCACTGTACTGGGAAGAAAACATTCACCATCT
*
28998960 TCGATCTGCTCCACTATTACTTAGGGAGATA
586 TCGATCTACTCCACTATTACTTAGGGAGATA
* * *
28998991 GGACCAATAGCTTAAATCTGCATCTTCACTATATTGGGAAGATAAGATTCACCATCTTCGATCTC
1 GGACCAATAGCTTAAATCTGCATCTCCACTATATTGGGAAAATAAGATTCACCATCTTCGATCTA
* * * * *
28999056 CAT-CACTACTGGTTAGGGTGACAGAATCTGCAATCTTAAACCGACTCCACTACTTCTTAGGATG
66 C-TCCACTACCGCTTAAGGTGACAGAATCTGCAATCTTAAACCGACACCACTACTACTTAGGATG
*
28999120 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA-ACTTCGA
130 ATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATA-TTCGA
* *
28999184 TCTGC-TCCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCAGTACT-GCTTA
194 TCTGCGT-CACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCAACTCCACTA-TGGCTTA
* * ** * *
28999247 GGGTGATAGGACTAATGGCTTAAATCTGATTCTCCACTATATTGGGATGATAAGATTTACCATCT
257 GGGAGATAGGACAAATGGCTTAAATCTGATTCTCCACTATATTGGGAAAACAAGATTCACCATCT
* * *
28999312 TCGATCTGCTT-CACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCAGTACTGC
322 TCGATCT-ATTCCAATACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
* * * * *
28999376 TTAGGGTGATAGGACTAGTGGCTTAAATTTGCTTGTCCACTATATTGGAAAGATAAGATTCACCA
386 TTAGGGAGATAGGACTAATAGCTTAAATCTGCTTCTCCACTATATTGGAAAGATAAGATTCACCA
* * * *
28999441 TCTTGGATCTTATCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTGAACCAACTCCACTACT
451 TCGTCGATCTGATCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCAACTCCACTACT
* * * *
28999506 GCTTAGGGAGATAGGACCAATGACTTAAATCCGCTTCTCCACTGTATTGGGAAGATAAGATTCAC
516 GCTTAGGGAGATAGGACCAATGACTTAAATCCACTTCTCCACTGTACTGGGAAGAAAACATTCAC
28999571 CATCTTCGATCTACTCCA
581 CATCTTCGATCTACTCCA
28999589 TTACTGCTTA
Statistics
Matches: 530, Mismatches: 63, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
615 2 0.00
616 524 0.99
617 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (616 bp):
GGACCAATAGCTTAAATCTGCATCTCCACTATATTGGGAAAATAAGATTCACCATCTTCGATCTA
CTCCACTACCGCTTAAGGTGACAGAATCTGCAATCTTAAACCGACACCACTACTACTTAGGATGA
TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCACCATATTCGATC
TGCGTCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCAACTCCACTATGGCTTAGGGA
GATAGGACAAATGGCTTAAATCTGATTCTCCACTATATTGGGAAAACAAGATTCACCATCTTCGA
TCTATTCCAATACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGG
GAGATAGGACTAATAGCTTAAATCTGCTTCTCCACTATATTGGAAAGATAAGATTCACCATCGTC
GATCTGATCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCAACTCCACTACTGCTTA
GGGAGATAGGACCAATGACTTAAATCCACTTCTCCACTGTACTGGGAAGAAAACATTCACCATCT
TCGATCTACTCCACTATTACTTAGGGAGATA
Found at i:29000173 original size:43 final size:42
Alignment explanation
Indices: 28999968--29000175 Score: 127
Period size: 44 Copynumber: 4.8 Consensus size: 42
28999958 AAGATTCACC
* *
28999968 ATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAGTCTGCA
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGACAGA-TCT-CA
* * * **
29000012 AACTTCAACCTACTCCGCTACTGCTTAGGGTGATAGGCCT-A
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGACAGATCTCA
* * * * * *
29000053 ATGGCTTAAATCTGCTTCTCCACTA-T-ATTGGGGAGATAAGAT-TCA
1 AT--CTTCAA-C--CTACTCCACTACTGCTTAGGGTGA-CAGATCTCA
* * * * *
29000098 TCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGATCTGCA
1 --ATCTTCAACCTACTCCACTACTGCTTAGGGTGACAGATCT-CA
29000143 ATCTTCAACCTACTCCACTACTGCTTAGGGTGA
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGA
29000176 TAGGACTAAT
Statistics
Matches: 120, Mismatches: 31, Indels: 27
0.67 0.17 0.15
Matches are distributed among these distances:
41 2 0.02
42 10 0.08
43 40 0.33
44 48 0.40
45 9 0.08
46 9 0.08
47 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (42 bp):
ATCTTCAACCTACTCCACTACTGCTTAGGGTGACAGATCTCA
Found at i:29000199 original size:43 final size:42
Alignment explanation
Indices: 28999970--29000199 Score: 112
Period size: 43 Copynumber: 5.3 Consensus size: 42
28999960 GATTCACCAT
* * *
28999970 CTTCGATCTACTCCACTACTGCTTAGGGTGACAGAGTCTGCAA-A
1 CTTCAATCTACTCCACTACTGCTTAGGGTGATAG-GACT--AATA
* * * *
29000014 CTTCAACCTACTCCGCTACTGCTTAGGGTGATAGGCCTAATGG
1 CTTCAATCTACTCCACTACTGCTTAGGGTGATAGGACTAAT-A
* * * * * * *
29000057 CTTAAATCTGCTTCTCCACTA-T-ATTGGGGAGATAAGATTCATCATA
1 CTTCAA--T-CTACTCCACTACTGCTTAGGGTGATAGGA--C-TAATA
* * * *
29000103 -TTCGATCTGCTCCACTACTGTTTAGGGTGACA-GATCTGCAAT-
1 CTTCAATCTACTCCACTACTGCTTAGGGTGATAGGA-CT--AATA
*
29000145 CTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGA
1 CTTCAATCTACTCCACTACTGCTTAGGGTGATAGGACTAAT-A
*
29000188 CTTAAATCTACT
1 CTTCAATCTACT
29000200 TCTCCACTGT
Statistics
Matches: 138, Mismatches: 32, Indels: 33
0.68 0.16 0.16
Matches are distributed among these distances:
41 6 0.04
42 12 0.09
43 53 0.38
44 50 0.36
45 4 0.03
46 10 0.07
47 3 0.02
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.31
Consensus pattern (42 bp):
CTTCAATCTACTCCACTACTGCTTAGGGTGATAGGACTAATA
Found at i:29001924 original size:132 final size:132
Alignment explanation
Indices: 29001687--29002275 Score: 943
Period size: 132 Copynumber: 4.5 Consensus size: 132
29001677 NNTCATCATA
29001687 TTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGC
1 TTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGC
* * * *
29001752 TTTGGGAGATAGGTCCAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
66 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
29001817 TC
131 TC
* * *
29001819 TTCGATCTGGTCCACTACTGTTGAGGGTGACAGAATCTGTAATCTTCAACCTACTCC-CGTACTA
1 TTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCAC-TACTG
* *
29001883 CTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTAGGAAGATAAGATTCACC
65 CTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACC
29001948 ATC
130 ATC
* *
29001951 TTCGATCTGC-CTCACTACT-TCTTAGGGTGACAGAATCTGTGATCTTCATCCTACTCCACTACT
1 TTCGATCTGCTC-CACTACTGT-TTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACT
*
29002014 GCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCAC
64 GCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCAC
*
29002079 CATA
129 CATC
* * * *
29002083 TTAGATCTGCTCCACTACTGCTTAGGATGACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
1 TTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGC
*
29002148 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCA
66 TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
29002213 TAC
131 T-C
*
29002216 -TCGATCTGCTCCACTACTGTTTAGTGTGACAGAATCTGTAATCTTCAACCTACTCCACTA
1 TTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTA
29002276 TTGNNNNNNN
Statistics
Matches: 418, Mismatches: 32, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
131 3 0.01
132 413 0.99
133 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (132 bp):
TTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGC
TTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA
TC
Found at i:29003555 original size:132 final size:132
Alignment explanation
Indices: 29003311--29003632 Score: 360
Period size: 132 Copynumber: 2.4 Consensus size: 132
29003301 NNNNNNNNNN
* * * ** *
29003311 AATCTTCAAGCTACTCCACTACTGCTTTGGGAGATAGGTCTAACGGCTTAAATCTGCTTCTCTAC
1 AATCTTCAACCTACTCCACTACTGCTTAGAGAGATAGAACTAACGGCTTAAATCTGCTTCTCCAC
* * ** * * ** *
29003376 TGTATTGGGAGGATAAGATTCACCATCTTCGATCTATTCCATTACTGCTTAGGGTGGCAAAATCT
66 TATATTGAGAAAATAAGATTCACCATCTTCGATCCACTCCACAACTGCTTAGGGTGACAAAATCT
**
29003441 TC
131 GA
* *
29003443 AATCTTCAACCTACTCCACTACTGCTTAGAGAGATTA-AACTAATGGCTTACATCTGCTTCTCCA
1 AATCTTCAACCTACTCCACTACTGCTTAGAGAGA-TAGAACTAACGGCTTAAATCTGCTTCTCCA
* * * * *
29003507 CTATCTTGAGAAAATATGATTCACCATCTTCGATCCGCTGCACAACTGCTTAGGGTGACAGAATC
65 CTATATTGAGAAAATAAGATTCACCATCTTCGATCCACTCCACAACTGCTTAGGGTGACAAAATC
29003572 TGA
130 TGA
* * * * *
29003575 AAT-TTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTT
1 AATCTTCAACCTACTCCACTACTGCTTAGAGAGATAGAACTAACGGCTTAAATCTGCTT
29003633 NNNNNNNNNN
Statistics
Matches: 159, Mismatches: 29, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
130 2 0.01
131 47 0.30
132 108 0.68
133 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.32
Consensus pattern (132 bp):
AATCTTCAACCTACTCCACTACTGCTTAGAGAGATAGAACTAACGGCTTAAATCTGCTTCTCCAC
TATATTGAGAAAATAAGATTCACCATCTTCGATCCACTCCACAACTGCTTAGGGTGACAAAATCT
GA
Found at i:29004240 original size:132 final size:132
Alignment explanation
Indices: 29003990--29004854 Score: 1197
Period size: 132 Copynumber: 6.6 Consensus size: 132
29003980 CAATTCAATT
* * *
29003990 TGCTCCACTACT-CTTTAGGGTGACTGAATCTGTAATCTTCAAGCTACTCCACTACTGCTTTGGG
1 TGCTCCACTACTGC-TTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGG
* * * *
29004054 AGATAGGTCTAACGGCTTAAATCTGCTTCTCTACTGTATTGGGAGGATAAGATTCACCATCTTCG
65 AGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCG
29004119 ATC
130 ATC
* * * *
29004122 TACTCCATTACTGCTTAGGGTGACAAAATCT-TCAATCTTCAACCTACTCCACTACTGCTTAGAG
1 TGCTCCACTACTGCTTAGGGTGACAGAATCTGT-AATCTTCAACCTACTCCACTACTGCTTAGGG
* * * * * * * *
29004186 AGATTGAACTAATGGCTTACATCTGTTTCTCCACTATCTTGAGAA-ACTATGATTCACCATCTTC
65 AGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA-TAAGATTCACCATCTTC
29004250 GATC
129 GATC
* * * * *
29004254 TGCTGCACAACTGCTTAGGG-GACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGT
1 TGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGA
* * *
29004318 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTTGA
66 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
29004383 TC
131 TC
*
29004385 TGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTTA-GG
1 TGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGC-TTAGGG
* * * *
29004449 AGATAGGTCTAACGGCTTAATTCTGCTTCTCTACTGTATTGGGAAGATATA-ATTCACCATCTTC
65 AGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATA-AGATTCACCATCTTC
29004513 GATC
129 GATC
* *
29004517 TGGTCCACTAATG-TTGAGGGTGACAGAATCTGTAATCTTCAACCTACTCC-CGTACTGCTTAGG
1 TGCTCCACTACTGCTT-AGGGTGACAGAATCTGTAATCTTCAACCTACTCCAC-TACTGCTTAGG
** * *
29004580 GTTATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTAGGAAGATAAGATTCACCATCTTC
64 GAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTC
29004645 GATC
129 GATC
* * * *
29004649 TGCTTCACTACTGCTTAGGGTGACAGAATCTGTGATCTTCATCCTACTCCACTACTGCTTAGGGT
1 TGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGA
* *
29004714 GATTGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTGGA
66 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
29004779 TC
131 TC
* *
29004781 TGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT
1 TGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGA
29004846 GATAGGACT
66 GATAGGACT
29004855 NNNNNNNNNN
Statistics
Matches: 642, Mismatches: 77, Indels: 28
0.86 0.10 0.04
Matches are distributed among these distances:
131 118 0.18
132 516 0.80
133 8 0.01
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (132 bp):
TGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGA
GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
TC
Found at i:29005729 original size:132 final size:132
Alignment explanation
Indices: 29005490--29006053 Score: 855
Period size: 132 Copynumber: 4.3 Consensus size: 132
29005480 NNNNNNNNNN
* * * *
29005490 ACTACTGCTTTGGGAGATAGGTCTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATATA
1 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATA-A
* *
29005555 -ATTCACCATCTTCGATCTGGTCCACTACTG-TTGAGGGTGACAGAATCTGTAATCTTCAACCTA
65 GATTCACCATCTTCGATCTGCTCCACTACTGCTT-AGGGTGACAGAATCTGCAATCTTCAACCTA
29005618 CTCC
129 CTCC
*
29005622 -CGTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTAGGAAGATAA
1 AC-TACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAA
*
29005686 GATTCACCATCTTCGATCTGCTTCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
65 GATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
29005751 TCC
130 TCC
* * *
29005754 AGTACTGCTTAGGGTGATAGGACTAGTGGCTTAAATTTGCTTCTCCACTATATTGGGAAGATAAG
1 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAG
* **
29005819 ATTCACCATCTTGGATCTTATCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACT
66 ATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACT
29005884 CC
131 CC
*
29005886 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAG
1 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAG
* * * * *
29005951 ATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTTAACCTACT
66 ATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACT
29006016 CC
131 CC
* * * * *
29006018 ACTATTGCTTTGGGAGATAGGTCTAACGGCTTAAAT
1 ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAAT
29006054 NNNNNNNNNN
Statistics
Matches: 395, Mismatches: 33, Indels: 8
0.91 0.08 0.02
Matches are distributed among these distances:
131 2 0.01
132 391 0.99
133 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (132 bp):
ACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAAGATAAG
ATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACT
CC
Found at i:29006482 original size:132 final size:132
Alignment explanation
Indices: 29006240--29006612 Score: 543
Period size: 132 Copynumber: 2.8 Consensus size: 132
29006230 NNNNNNNNCA
* *
29006240 ACTGCTTAGGGTGACAGAATCTGCGATCTTCAACCTACTCCACTATTGCTTAGGGTGATAGGACT
1 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
* * *
29006305 AATGACTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATATTCGATCTCCAT-C
66 AATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTAC-TCC
29006369 ACT
130 ACT
* * * * *
29006372 ACTAG-TTAGGGTGACAGAATCTGTAATCTTCAACCTACTACACTACTGCTTTGGGAGATAGGTC
1 ACT-GCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGAC
* * * *
29006436 TAACGGCTTAAATCTGCTTCTCTACTGTTTTGGGAAGATAAGATTCACCATCTTCGATCTACTCC
65 TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTACTCC
29006501 ACT
130 ACT
* *
29006504 ACTGCTTAGGGTGACAGAATCTGCAAACTTCAACCTACTCCACTACTGCTTAGGGTGATAGGCCT
1 ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
* * *
29006569 AATGGCTTAAATCTGCTTCTCCACTATATTGGGGAGTTAAGATT
66 AATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATT
29006613 NNNNNNNNNN
Statistics
Matches: 212, Mismatches: 26, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
131 2 0.01
132 209 0.99
133 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (132 bp):
ACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACT
AATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATATTCGATCTACTCCA
CT
Found at i:29007341 original size:44 final size:44
Alignment explanation
Indices: 29007289--29007397 Score: 164
Period size: 44 Copynumber: 2.5 Consensus size: 44
29007279 ATTAGATTTG
* *
29007289 CTCCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
* *
29007333 CTCTACTACTGCTTAGGGTGACAGAATCTGCAATCTTTAACCTA
1 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
* *
29007377 CTCCACTACTTCTTAGAGTGA
1 CTCCACTACTGCTTAGGGTGA
29007398 TAGGACTAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.32
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTA
Found at i:29007558 original size:132 final size:133
Alignment explanation
Indices: 29007337--29008354 Score: 1352
Period size: 132 Copynumber: 7.8 Consensus size: 133
29007327 AACCTACTCT
* * *
29007337 ACTACTGCTTAGGGTGACAGAATCTGCAAT-CTTTAACCTACTCCACTACTTCTTAGAGTGATAG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
29007401 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
29007466 TCC
131 TCC
* * * * * **
29007469 ACTAATACTTAGGGTGACAGAATCTGGAATCCTT-AACCGACTCCACTTCTTTTTAGGGTGATAG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* *
29007533 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGGTAAGATTCACCATCTTCGATCTAC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
*
29007598 CCC
131 TCC
* *
29007601 ACTACTGCTTAGGGTAACAAAATCTGCAAT-CTTCAACCTACTCCACTACTGCTTAGGGTGATAG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
** * * *
29007665 GACTAATGGCTTAAATCTG----T-CAAAGCTACTGGGAACATAAGATTCACAATCTTCGATCTG
66 GACTAATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCACCATCTTCGATCTG
29007725 CTCC
130 CTCC
*
29007729 ACTACTGCTTAGGGTGACAGAATCTGCAAT-CTTCAACCTACTCCACCACTGCTTAGGGTGATAG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * *
29007793 GACTAATGGATTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTTGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
29007858 TCC
131 TCC
* * * * *
29007861 ACTACTGCTTAGGGTGACAGAATCTGCAAT-ATTCAGCCTACTCCACTACTGCTGAGGGCGATTG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * * *
29007925 GACCAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAACATTCACCATCTTTGATCTTC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
**
29007990 TTT
131 TCC
* * * *
29007993 ACTATTGCTTAGGGTGACAGAATCTGCAA-ACTTCGACCTACTCCACTACTTCTTAGGGTGATAG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* * * * *
29008057 GACTAATGGCTTAAATCTGTTTCTCCACTGTATCGGGAAGATATGATTCATCATATTCGATCTGC
66 GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
29008122 TCC
131 TCC
* * * * * *
29008125 ACTACTGCTTTGGGTGACAAAATCTGTAAT-CTTTAACCTACCCCACTACTGCTTAGGGAGATAG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
* *
29008189 GACTAATGGCTTAAAATCTACTTCTCCACAGTATTGGGGAAGATAAGATTCACCATCTTCGATCT
66 GACTAATGGCTT-AAATCTGCTTCTCCACTGTATT-GGGAAGATAAGATTCACCATCTTCGATCT
*
29008254 ACTCC
129 GCTCC
* * * *
29008259 ACTACTGCTTAGGGTGACA-AATCTGCAAT-CTTCAATCTATTCCACTACAGCTTA--G-GAGAG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
29008319 TGACTAATGGCTTAAATCTTGCTTCT-CACTGTATTG
66 -GACTAATGGCTTAAATC-TGCTTCTCCACTGTATTG
29008355 NNNNNNNNNN
Statistics
Matches: 775, Mismatches: 97, Indels: 31
0.86 0.11 0.03
Matches are distributed among these distances:
127 3 0.00
128 111 0.14
129 1 0.00
130 17 0.02
131 22 0.03
132 520 0.67
133 53 0.07
134 48 0.06
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (133 bp):
ACTACTGCTTAGGGTGACAGAATCTGCAATCCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
GACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC
TCC
Found at i:29007660 original size:308 final size:309
Alignment explanation
Indices: 29007031--29007661 Score: 851
Period size: 308 Copynumber: 2.0 Consensus size: 309
29007021 NNNNNNNNNN
* ** * *
29007031 ACTGTTTAGGGTGACAGAATCTGTTATCTTCATACTACTACACTACTGCTTAGGGAGATAGGTCT
1 ACTGCTTAGGGTGACAGAATCTGCAATCTTCATACTACTACACTACTGCTTAGAGAGATAGGACT
*
29007096 AATAGCCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCC
66 AATAGCCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCC
** ** *
29007161 ACTGCTACCTTAGAGTGACAGAATCTGCAATCTTCAACTTACTCCATTTCTGTTTAGGGAGAAGG
131 ACTAATACCTTAGAGTGACAGAATCTGCAATCTTCAACCGACTCCACTTCTGTTTAGGGAGAAGG
* *** * * *
29007226 GACATATGGCTTAAATCTGTTTCTCCACTGTATTGGAAGATAAGATTCATGGTATTAGATTTGCT
196 GACATATGGCTTAAATCTGCTTCTCCACTGTATTGGAAGATAAGATTCACCATATTAGATCTACC
* * * * *
29007291 CCACTACTGTTTAGGGTGACAGAATCTGTAATCTTCAACCTACTCTACT
261 CCACTACTGCTTAGGGTAACAAAATCTGCAATCTTCAACCTACTCCACT
* * * *
29007340 ACTGCTTAGGGTGACAGAATCTGCAATCTTTA-ACCTACTCCACTACTTCTTAGAGTGATAGGAC
1 ACTGCTTAGGGTGACAGAATCTGCAATCTTCATA-CTACTACACTACTGCTTAGAGAGATAGGAC
* *
29007404 TAAT-GGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTC
65 TAATAGCCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTC
* * * *
29007468 CACTAATA-CTTAGGGTGACAGAATCTGGAATCCTT-AACCGACTCCACTTCTTTTTAGGGTGAT
130 CACTAATACCTTAGAGTGACAGAATCTGCAAT-CTTCAACCGACTCCACTTCTGTTTAGGGAGA-
* * *
29007531 A-GGAC-TAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGGTAAGATTCACCATCTTCGAT
193 AGGGACAT-ATGGCTTAAATCTGCTTCTCCACTGTATT-GGAAGATAAGATTCACCATATTAGAT
29007594 CTACCCCACTACTGCTTAGGGTAACAAAATCTGCAATCTTCAACCTACTCCACT
256 CTACCCCACTACTGCTTAGGGTAACAAAATCTGCAATCTTCAACCTACTCCACT
29007648 ACTGCTTAGGGTGA
1 ACTGCTTAGGGTGA
29007662 TAGGACTAAT
Statistics
Matches: 281, Mismatches: 36, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
306 1 0.00
307 75 0.27
308 148 0.53
309 57 0.20
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (309 bp):
ACTGCTTAGGGTGACAGAATCTGCAATCTTCATACTACTACACTACTGCTTAGAGAGATAGGACT
AATAGCCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCC
ACTAATACCTTAGAGTGACAGAATCTGCAATCTTCAACCGACTCCACTTCTGTTTAGGGAGAAGG
GACATATGGCTTAAATCTGCTTCTCCACTGTATTGGAAGATAAGATTCACCATATTAGATCTACC
CCACTACTGCTTAGGGTAACAAAATCTGCAATCTTCAACCTACTCCACT
Found at i:29008050 original size:392 final size:394
Alignment explanation
Indices: 29007337--29008354 Score: 1435
Period size: 392 Copynumber: 2.6 Consensus size: 394
29007327 AACCTACTCT
* *
29007337 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTTAACCTACTCCACTACTTCTTAGAGTGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTTAACCTACTCCACTACTGCTTAGGGTGATAGG
*
29007402 ACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
66 ACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
* * * * * ** *
29007467 CCACTAATACTTAGGGTGACAGAATCTGGAATCCTT-AACCGACTCCACTTCTTTTTAGGGTGAT
131 CCACTACTGCTTAGGGTGACAGAATCTGCAAT-CTTCAACCTACTCCACTACTGCTTAGGGAGAT
* * *
29007531 AGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGGTAAGATTCACCATCTTCGATCT
195 TGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAACATTCACCATCTTCGATCT
*
29007596 ACCCCACTACTGCTTAGGGTAACAAAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTG
260 ACCCCACTACTGCTTAGGGTAACAAAATCTGCAAACTTCAACCTACTCCACTACTGCTTAGGGTG
*
29007661 ATAGGACTAATGGCTTAAATCTG-TC-AAA-GCTA-CTGGGAACATAAGATTCA-CAATCTTCGA
325 ATAGGACTAATGGCTTAAATCTGTTCTAAACG-TATC-GGGAACATAAGATTCATC-ATATTCGA
29007721 TCTGCTCC
387 TCTGCTCC
* *
29007729 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACCACTGCTTAGGGTGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTTAACCTACTCCACTACTGCTTAGGGTGATAGG
* *
29007794 ACTAATGGATTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTTGATCTGCT
66 ACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
* * * *
29007859 CCACTACTGCTTAGGGTGACAGAATCTGCAATATTCAGCCTACTCCACTACTGCTGAGGGCGATT
131 CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATT
* * *
29007924 GGACCAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAACATTCACCATCTTTGATCTT
196 GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAACATTCACCATCTTCGATCTA
*** * * * * *
29007989 CTTTACTATTGCTTAGGGTGACAGAATCTGCAAACTTCGACCTACTCCACTACTTCTTAGGGTGA
261 CCCCACTACTGCTTAGGGTAACAAAATCTGCAAACTTCAACCTACTCCACTACTGCTTAGGGTGA
** * *
29008054 TAGGACTAATGGCTTAAATCTGTTTCTCCACTGTATCGGGAAGATATGATTCATCATATTCGATC
326 TAGGACTAATGGCTTAAATCTG-TTCTAAAC-GTATCGGGAACATAAGATTCATCATATTCGATC
29008119 TGCTCC
389 TGCTCC
* * * * *
29008125 ACTACTGCTTTGGGTGACAAAATCTGTAATCTTTAACCTACCCCACTACTGCTTAGGGAGATAGG
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTTAACCTACTCCACTACTGCTTAGGGTGATAGG
* *
29008190 ACTAATGGCTTAAAATCTACTTCTCCACAGTATTGGGGAAGATAAGATTCACCATCTTCGATCTA
66 ACTAATGGCTT-AAATCTACTTCTCCACTGTATT-GGGAAGATAAGATTCACCATCTTCGATCTG
* * *
29008255 CTCCACTACTGCTTAGGGTGACA-AATCTGCAATCTTCAATCTATTCCACTACAGCTTA-GGAGA
129 CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGA
*
29008318 GT-GACTAATGGCTTAAATCTTGCTTCT-CACTGTATTG
194 TTGGACTAATGGCTTAAATC-TGCTTCTCCACTGTATTG
29008355 NNNNNNNNNN
Statistics
Matches: 557, Mismatches: 58, Indels: 19
0.88 0.09 0.03
Matches are distributed among these distances:
391 2 0.00
392 311 0.56
394 2 0.00
395 27 0.05
396 111 0.20
397 53 0.10
398 51 0.09
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (394 bp):
ACTACTGCTTAGGGTGACAGAATCTGCAATCTTTAACCTACTCCACTACTGCTTAGGGTGATAGG
ACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCT
CCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATT
GGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAACATTCACCATCTTCGATCTA
CCCCACTACTGCTTAGGGTAACAAAATCTGCAAACTTCAACCTACTCCACTACTGCTTAGGGTGA
TAGGACTAATGGCTTAAATCTGTTCTAAACGTATCGGGAACATAAGATTCATCATATTCGATCTG
CTCC
Found at i:29009320 original size:132 final size:132
Alignment explanation
Indices: 29009083--29009809 Score: 1177
Period size: 132 Copynumber: 5.5 Consensus size: 132
29009073 NNNNNNNNNN
* * * *
29009083 ATCTGCAACCTTCAACCTATTCCAGTACTGCTTAGGGTGATAGGATTAATGGCTTAAATCTGCTT
1 ATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTT
* * * * * *
29009148 CTCTACTGTTTTGGGAAGATAAGATTTATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACA
66 CTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGATTAGGGTGACA
29009213 GA
131 GA
*
29009215 ATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGAGAGGACTAATGGCTTAAATCTGCTT
1 ATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTT
* * * *
29009280 CTCCACTCTAATGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGTTGACA
66 CTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGATTAGGGTGACA
*
29009345 AA
131 GA
* * *
29009347 ATCTGTAATCTTCAACCTACTCCACTATTGCTTAGGGTGATAGGACTAATGGCTTAAATCTTCTT
1 ATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTT
*
29009412 CTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTTCC-CTACTGCTTAGGGTGAC
66 CTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGATTAGGGTGAC
29009476 AGA
130 AGA
* *
29009479 ATCTGCAATCTTCGACCTACTCCACTACTGCTTAGAGTGATAGGACTAATGGCTTAAATCTGCTT
1 ATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTT
*
29009544 CTCCACTGTATTGGGAAGCTAAGATTCACCATCTTCGATCTGCTCCACTACTGATTAGGGTGACA
66 CTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGATTAGGGTGACA
29009609 GA
131 GA
29009611 ATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTT
1 ATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTT
* * *
29009676 CTCCACTGTATTAGGAAGATAAGATTAACCATCTTTGATCTGCTCCACTACTGATTAGGGTGACA
66 CTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGATTAGGGTGACA
29009741 GA
131 GA
* * *
29009743 ATTTGCAATATTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGGTTAAATCTGCTT
1 ATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTT
29009808 CT
66 CT
29009810 GATCAGTAAG
Statistics
Matches: 554, Mismatches: 39, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
131 3 0.01
132 548 0.99
133 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.32
Consensus pattern (132 bp):
ATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTT
CTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGATTAGGGTGACA
GA
Found at i:29009507 original size:44 final size:44
Alignment explanation
Indices: 29009181--29009782 Score: 159
Period size: 44 Copynumber: 13.7 Consensus size: 44
29009171 ATTTATCATA
*
29009181 TTCGATCTGCTCCACTACTGTTTAGGGTGACAGAATCTGCAATC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATC
* * * * *
29009225 TTCAACCTACTCCACTACTGCTTAGGGTGAGAGGA-CT--AATGGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--C
** * * * * * * * * *
29009268 TTAAATCTGCTTCTCCACT-CTAATGGGAAGATAAGATTC-ACCATC
1 TTCGATCTGCTCCACTACTGCTTA-GGG-TGA-CAGAATCTGCAATC
* * *
29009313 TTCGATCTGCTCCACTACTGCTTAGGTTGACAAAATCTGTAATC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATC
* * * * * *
29009357 TTCAACCTACTCCACTATTGCTTAGGGTGATAGGA-CT--AATGGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--C
** * * * * * * * * * *
29009400 TTAAATCTTCTTCTCCACTG-TATTGGGAAGATAAGATTC-ACCATC
1 TTCGATCTGCTCCACTACTGCT-TAGGG-TGA-CAGAATCTGCAATC
29009445 TTCGATCTGCTTCC-CTACTGCTTAGGGTGACAGAATCTGCAATC
1 TTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCAATC
* * * * *
29009489 TTCGACCTACTCCACTACTGCTTAGAGTGATAGGA-CT--AATGGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--C
** * * * * * * * *
29009532 TTAAATCTGCTTCTCCACTG-TATTGGG-AAGCTAAGATTC-ACCATC
1 TTCGATCTGCTCCACTACTGCT-TAGGGTGA-C--AGAATCTGCAATC
*
29009577 TTCGATCTGCTCCACTACTGATTAGGGTGACAGAATCTGCAATC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATC
* * * * *
29009621 TTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT--AATGGC
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAAT--C
** * * * * ** * * *
29009664 TTAAATCTGCTTCTCCACTGTATTAGGAAGATA-AGAT-TAACCATC
1 TTCGATCTGCTCCACTACTG-CTTAGGGTGACAGA-ATCT-GCAATC
* * * *
29009709 TTTGATCTGCTCCACTACTGATTAGGGTGACAGAATTTGCAATA
1 TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATC
* * *
29009753 TTCAACCTACTCCACTACTGCTTAGGGTGA
1 TTCGATCTGCTCCACTACTGCTTAGGGTGA
29009783 TAGGACTAAT
Statistics
Matches: 388, Mismatches: 126, Indels: 88
0.64 0.21 0.15
Matches are distributed among these distances:
41 12 0.03
42 6 0.02
43 92 0.24
44 180 0.46
45 79 0.20
46 11 0.03
47 8 0.02
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.31
Consensus pattern (44 bp):
TTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATC
Found at i:29010173 original size:132 final size:132
Alignment explanation
Indices: 29009934--29010339 Score: 704
Period size: 132 Copynumber: 3.1 Consensus size: 132
29009924 NNNNNNNNNN
29009934 AATCTTCAACCTACTCCACTACTCCTTAAGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
1 AATCTTCAACCTACTCCACTACTCCTTAAGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
*
29009999 TTTATTTGGAAGATAAGATTCACCATCTTCGATCTGCACCACTACTGCTTAGGGTGACAGAATCT
66 TTTATTTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCT
29010064 GC
131 GC
* * * * * *
29010066 AATCTTCAACCTATTCAAGTACTGCTTAGGGTGATAGGACTAATGGCTGAAATCTGCTTCTCCAC
1 AATCTTCAACCTACTCCACTACTCCTTAAGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
* *
29010131 TTTATTTGTAAGATAAGATTCACAATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCT
66 TTTATTTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCT
29010196 GC
131 GC
29010198 AATCTTCAACCTACTCCACTACTCCTTAAGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
1 AATCTTCAACCTACTCCACTACTCCTTAAGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
* *
29010263 TGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCT
66 TTTATTTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCT
*
29010328 GT
131 GC
29010330 AATCTTCAAC
1 AATCTTCAAC
29010340 TGCCTCCNNN
Statistics
Matches: 254, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 254 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (132 bp):
AATCTTCAACCTACTCCACTACTCCTTAAGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
TTTATTTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCT
GC
Found at i:29010203 original size:44 final size:44
Alignment explanation
Indices: 29010153--29010342 Score: 122
Period size: 44 Copynumber: 4.3 Consensus size: 44
29010143 ATAAGATTCA
*
29010153 CAATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
1 CAATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
* * * * * *
29010197 CAATCTTCAACCTACTCCACTACTCCTTAAGGTGATAGGA-CT-
1 CAATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
* * * * * * * * *
29010239 -AATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTC-A
1 CAAT--CTTCAATCTGCTCCACTACTGCT-TAGGG-TGA-CAGAATCTG
* *
29010285 CCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
1 CAATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
*
29010329 TAATCTTCAA-CTGC
1 CAATCTTCAATCTGC
29010343 CTCCNNNNNN
Statistics
Matches: 102, Mismatches: 34, Indels: 21
0.65 0.22 0.13
Matches are distributed among these distances:
41 3 0.03
42 1 0.01
43 28 0.27
44 44 0.43
45 22 0.22
46 2 0.02
47 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (44 bp):
CAATCTTCAATCTGCTCCACTACTGCTTAGGGTGACAGAATCTG
Found at i:29011138 original size:103 final size:103
Alignment explanation
Indices: 29010959--29011147 Score: 270
Period size: 103 Copynumber: 1.8 Consensus size: 103
29010949 NNNNNNNNNN
* * * * * ** *
29010959 CTCCACTACTGCTTAGGGTGACAGAATGTGCAATCTTCAACCTATTCAAGTACTGGTTAGGGTGA
1 CTCCACTACTACTTAGGGTGACAGAATCTACAATCTTCAACCTACTCAACTACTCCTTAGGGAGA
29011024 TAGGACTAATGGCTTAAATCTTCAACCTATACGATCTG
66 TAGGACTAATGGCTTAAATCTTCAACCTATACGATCTG
* * *
29011062 CTCCACTACTATTTAGGGTGACAGAATCTATAATCTTCAACCTACTCTACTACTCCTTAGGGAGA
1 CTCCACTACTACTTAGGGTGACAGAATCTACAATCTTCAACCTACTCAACTACTCCTTAGGGAGA
*
29011127 TAGGTCTAATGGCTTAAATCT
66 TAGGACTAATGGCTTAAATCT
29011148 GCTTCTCTAC
Statistics
Matches: 74, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
103 74 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (103 bp):
CTCCACTACTACTTAGGGTGACAGAATCTACAATCTTCAACCTACTCAACTACTCCTTAGGGAGA
TAGGACTAATGGCTTAAATCTTCAACCTATACGATCTG
Found at i:29011292 original size:132 final size:132
Alignment explanation
Indices: 29011055--29011955 Score: 1185
Period size: 132 Copynumber: 6.8 Consensus size: 132
29011045 TCAACCTATA
** ** * *
29011055 CGATCTGCTCCACTACTATTTAGGGTGACAGAATCTATAATCTTCAACCTACTCTACTACTCCTT
1 CGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT
* *
29011120 AGGGAGATAGGTCTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTCACCATC
66 AGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATC
29011185 TT
131 TT
* * * * *
29011187 CGATCTACTCCGCTACTGCTTAGGGTGACAAAATCTGCAATCTTCAACCTATTCGACTACTGCTT
1 CGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT
* * * *
29011252 AGGGAGATAGGACTAATGGCTTAAATCTTCTTCTCCACTGTATTGGGAAGATAAGATTTATCATA
66 AGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATC
29011317 TT
131 TT
* * * * *
29011319 CGGTCTGCTCCACTACTGTTTAAGGTGACAGAATATGTAATCTTCAACCTACTCCACTACTGCTT
1 CGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT
* * * * * * * * *
29011384 AGGTAGATTGGACAAATGGCTTACATCTGCTGCTCCACTATTTTGAGAAGATATGATTCACCAT-
66 AGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATC
29011448 TT
131 TT
* * * * *
29011450 CCATCTGCTCCACTACTGCTTAAGGCGATAGAATCTGCAATCTTCAACCTACTCCACTACTACTT
1 CGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT
* * * *
29011515 AAGGTGATAGGACTAATGGCTTAAATCTGCTTCCCCACTGGATTGGGAAGATAAGATTCACCATC
66 AGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATC
29011580 TT
131 TT
* *
29011582 CGATCTGCTCCACTACTGCTTAGGGTGGA-AGAATCTGCAATCTTCAAACTACTCCACTACTGCG
1 CGATCTGCTCCACTACTGCTTAGGGT-GACAGAATCTGCAATCTTCAACCTACTCCACTACTGCT
* * * *
29011646 TAGGGTGATAGGACTAATGGCTGAAATCTGCTTATCCACTATATTGGGAAGATAAGATTCACCAT
65 TAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCAT
29011711 CTT
130 CTT
* * *
29011714 CGATCTGCTCCACTACTGCTTAGGGTGACAGAATGTGCAATCTTCAACCTATTCCACTACTGGTT
1 CGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT
* * * * * * *
29011779 AGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCATTGTCTTGGGAAGATAAGATTTATCATA
66 AGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATC
29011844 TT
131 TT
* * ** *
29011846 CGATCTGCTCCAGTACTGTTTAGGGTGACAGAATCTATAATCTTCAACCTACTCCACTACTCCTT
1 CGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT
* * * * *
29011911 AGGGAGATAGGTCTAATAGCTTAAATATGCTTCTCTACTGCATTG
66 AGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTG
29011956 NNNNNNNNNN
Statistics
Matches: 664, Mismatches: 102, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
131 112 0.17
132 550 0.83
133 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (132 bp):
CGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT
AGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATC
TT
Found at i:29011790 original size:395 final size:396
Alignment explanation
Indices: 29011057--29011943 Score: 1276
Period size: 395 Copynumber: 2.2 Consensus size: 396
29011047 AACCTATACG
* *
29011057 ATCTGCTCCACTACTATTTAGGGTGACAGAATCTATAATCTTCAACCTACTCTACTACTCCTTAG
1 ATCTGCTCCACTACTGTTTAGGGTGACAGAATCTATAATCTTCAACCTACTCCACTACTCCTTAG
* * *
29011122 GGAGATAGGTCTAATGGCTTAAATCTGCTTCTCTACTGTATTGGGAAGATAAGATTCACCATCTT
66 GGAGATAGGTCTAATGGCTTAAATCTGCTTCCCCACTGGATTGGGAAGATAAGATTCACCATCTT
* * * * *
29011187 CGATCTACTCCGCTACTGCTTAGGGTGACAAAATCTGCAATCTTCAACCTATTCGACTACTGCTT
131 CGATCTACTCCACTACTGCTTAGGGTGACAAAATCTGCAATCTTCAAACTACTCCACTACTGCGT
* * * * * *
29011252 AGGGAGATAGGACTAATGGCTTAAATCTTCTTCTCCACTGTATTGGGAAGATAAGATTTATCATA
196 AGGGAGATAGGACTAATGGCTGAAATCTGCTTATCCACTATATTGGGAAGATAAGATTCACCATA
* * *
29011317 TTCGGTCTGCTCCACTACTGTTTAAGGTGACAGAATATGTAATCTTCAACCTACTCCACTACTGC
261 TTCGATCTGCTCCACTACTGCTTAAGGTGACAGAATATGCAATCTTCAACCTACTCCACTACTGC
* * *
29011382 TTAGGTAGATTGGACAAATGGCTTACATCTGCTGCTCCACTATTTTGAGAAGATATGATTCACCA
326 TTAGGTAGATTGGACAAATGGCTTAAATCTGCTGCTCCACTATCTTGAGAAGATAAGATTCACCA
29011447 T-TTCC
391 TATTCC
* * * * ** * *
29011452 ATCTGCTCCACTACTGCTTAAGGCGATAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAA
1 ATCTGCTCCACTACTGTTTAGGGTGACAGAATCTATAATCTTCAACCTACTCCACTACTCCTTAG
* *
29011517 GGTGATAGGACTAATGGCTTAAATCTGCTTCCCCACTGGATTGGGAAGATAAGATTCACCATCTT
66 GGAGATAGGTCTAATGGCTTAAATCTGCTTCCCCACTGGATTGGGAAGATAAGATTCACCATCTT
* *
29011582 CGATCTGCTCCACTACTGCTTAGGGTGGA-AGAATCTGCAATCTTCAAACTACTCCACTACTGCG
131 CGATCTACTCCACTACTGCTTAGGGT-GACAAAATCTGCAATCTTCAAACTACTCCACTACTGCG
*
29011646 TAGGGTGATAGGACTAATGGCTGAAATCTGCTTATCCACTATATTGGGAAGATAAGATTCACCAT
195 TAGGGAGATAGGACTAATGGCTGAAATCTGCTTATCCACTATATTGGGAAGATAAGATTCACCAT
* * * *
29011711 CTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATGTGCAATCTTCAACCTATTCCACTACTG
260 ATTCGATCTGCTCCACTACTGCTTAAGGTGACAGAATATGCAATCTTCAACCTACTCCACTACTG
* * * * * * * *
29011776 GTTAGGGT-GATTGGACTAATGGCTTAAATCTGCTTCTCCATTGTCTTGGGAAGATAAGATTTAT
325 CTTA-GGTAGATTGGACAAATGGCTTAAATCTGCTGCTCCACTATCTTGAGAAGATAAGATTCAC
*
29011840 CATATTCG
389 CATATTCC
*
29011848 ATCTGCTCCAGTACTGTTTAGGGTGACAGAATCTATAATCTTCAACCTACTCCACTACTCCTTAG
1 ATCTGCTCCACTACTGTTTAGGGTGACAGAATCTATAATCTTCAACCTACTCCACTACTCCTTAG
* *
29011913 GGAGATAGGTCTAATAGCTTAAATATGCTTC
66 GGAGATAGGTCTAATGGCTTAAATCTGCTTC
29011944 TCTACTGCAT
Statistics
Matches: 428, Mismatches: 61, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
395 337 0.79
396 91 0.21
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (396 bp):
ATCTGCTCCACTACTGTTTAGGGTGACAGAATCTATAATCTTCAACCTACTCCACTACTCCTTAG
GGAGATAGGTCTAATGGCTTAAATCTGCTTCCCCACTGGATTGGGAAGATAAGATTCACCATCTT
CGATCTACTCCACTACTGCTTAGGGTGACAAAATCTGCAATCTTCAAACTACTCCACTACTGCGT
AGGGAGATAGGACTAATGGCTGAAATCTGCTTATCCACTATATTGGGAAGATAAGATTCACCATA
TTCGATCTGCTCCACTACTGCTTAAGGTGACAGAATATGCAATCTTCAACCTACTCCACTACTGC
TTAGGTAGATTGGACAAATGGCTTAAATCTGCTGCTCCACTATCTTGAGAAGATAAGATTCACCA
TATTCC
Found at i:29022295 original size:132 final size:132
Alignment explanation
Indices: 29022017--29025312 Score: 3734
Period size: 132 Copynumber: 24.9 Consensus size: 132
29022007 AGATGGGTTG
* * * *
29022017 AAATCTTGCCTTCTCCTACCTGTGTTGAGGAAAATAAGATTCACCATCTTCGATCTACTCCAATA
1 AAATC-TG-CTTCTCC-A-CTGTATTG-GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA
* * *
29022082 CTGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACTGCTTAGGGAGATTGGACTA
61 CTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTA
*
29022147 ATGGCTG
126 ATGGCTT
* * * * * *
29022154 AAATTTGCTTCTCCACTTTCTTGAGAAGATAAGAATCATCATCTTCGATCTGCAT-CACTACTGC
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGC
*
29022218 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATATGACTAATGG
65 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
29022283 CTT
130 CTT
* * * * ** * * * *
29022286 AAATCTGCTTCTCCACTGTATTGAGAAAATCAGATTTATTATATTTGATCTGCTTCACTACTGTT
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
* * * *
29022351 TAGGGTGACAGAATCTGTAATCTTCAACCAATTCCACTA-TAGCTTAGGGAGATAGGACTAATGG
66 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTGATAGGACTAATGG
29022415 CTT
130 CTT
* * * * *
29022418 AAATATGCTTCTCCATTGTATTGGGAAAATAAGATTCACCATCTTCGATCTACTCCAATACTGCT
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
* * * * *
29022483 TAGGGTGACAGAATCTACAATCTTCAACCTACTGCTCTACTGCTTAGGGAGATTGGACTAATGGC
66 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
*
29022548 TG
131 TT
* * * * * * **
29022550 AAATCTGCTTCTCCATTATCTTGAGAAGATAAGAATCACCATCTTCGACCCACTCCACTACTGCT
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
* *
29022615 TAGGGTGACAGAATCTGTAATCCTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
66 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
29022680 TT
131 TT
** *
29022682 AAATCTGCTTCTCCACTGTATTATGAAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTGG
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGC
*
29022746 TTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGG
65 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
29022811 CTT
130 CTT
* *
29022814 AAATCTGCTTCTCCACTGTATTGGGAAGATAGGATTCACCATCGTCGATCTGCTCCACTACTGCT
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
* * * * * *
29022879 TAGGGTGACAGAATCTGAAATCTTTAACCTACTCCACTACTGCTTTGGGTGATAAGACAAATGGT
66 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
29022944 TT
131 TT
* * * * ** *
29022946 AAATCTGCTTCTCCACTGTATTGGGAAAATAAGCTTCATCATTTTTAATCTGCTTCACTACTGCT
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
*
29023011 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGATAGGACTAATGGC
66 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
29023076 TT
131 TT
* * * * * * *
29023078 AAATTTGCTTCTCCACTGTATTGGGAAAATACGATTCATCATATTCGATCTGCTTCACTACTGTT
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
* *
29023143 TAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACTGCTAAGGGTGATAGGACTAATGGC
66 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
29023208 TT
131 TT
** * *
29023210 AAATCTGCTTCTCCACTGTATTATGCAGATAAGATTCATCATCTTCGATCTGCTCCACTACTGCT
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
* * *
29023275 TAGGGTGACAGAATCTGGAATTTTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
66 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
29023340 TT
131 TT
*
29023342 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTGG
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGC
* * *
29023406 TTAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGGCTAAGGG
65 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
29023471 CTT
130 CTT
* * * *
29023474 AAATCTGCTTCTCTACTGTATTGGGAAGATAGGTTTCACCATCGTCGATCTGCTCCACTACTGCT
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
* * * *
29023539 TAGGGTGACAGAATCTCCAAGCTTTAACCTACTCCACTACTGCTTTGGGTGATAGGACTAATGGC
66 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
*
29023604 AT
131 TT
* * *** * * * *
29023606 AAATCTACTTCTCCACTGTATTGGGAAAATAAGATTTGTCATATTTGATCTGCTTCACTATTGCT
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
* *** *
29023671 TAGGGTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGAAAGATTGGACTAATGGC
66 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
29023736 TT
131 TT
*
29023738 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATTTGCTCCACTACTGCT
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
* * *
29023803 TAGGGTGACGGAATCTGCAATCTTCAACTTACTCCACTAGTGCTTAGGGTGATAGGACTAATGGC
66 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
29023868 TT
131 TT
* * * * *
29023870 AAATCTGCTTCTCCACTGTATTTGGAAGAAAAGATTCACGATATTCGATCTGCTCCACTGCTGCT
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
* *
29023935 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTATTGCTTAGGGTGATTGGACTAATGGC
66 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
29024000 TT
131 TT
* * *
29024002 AAATGTGCTTCTCCACTGTATTGGGAAGATAAGATTCATCATCTTCGATCTGTTCCACTACTGCT
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
* * *
29024067 TAGGGTGATAGAATCTAG-AATCTTCAACCGACTCCAATACTGCTTAGGGTGATAGGACTAATGG
66 TAGGGTGACAGAATCT-GCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGG
29024131 CTT
130 CTT
* * *
29024134 AAATCTACTTCTCTACTGTATTGGGAAGATAAGATTCACCATTTTCGATCTGCTCCACTACTGCT
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
* * *
29024199 TAGAGTGACAGATTCTGCAATCTTCAACCTACTCCACTACTACTTAGGGTGATAGGACTAATGGC
66 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
29024264 TT
131 TT
* * * * *
29024266 AAATCTACTTCTCCACTGTGTTGGGAAGATAAGATTCATCATATTCGATCTGCTGCACTACTGCT
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
*
29024331 TAGGGTGACAGAGTCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATTA-GACTAATGG
66 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA-TAGGACTAATGG
29024395 CTT
130 CTT
* * *
29024398 AAATCTGCTTCTCCACTGTATTGGGATGATAGGATTCACCATCGTCGATCTGCTCCACTACTGCT
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
* * * * ** * ** * *
29024463 TAGAGTGATATG-A-CT--AATAGCTTAAATCTACTTCTGC-ACTG-TATTGGGAAAATATGATT
66 TAGGGTGACA-GAATCTGCAAT--CTTCAACCTAC-TCCACTACTGCT-TAGGG-TGATAGGACT
* ***
29024522 CATCATATT
125 AAT-GGCTT
** * * * * * * * * * * ***
29024531 CCATCTGTTTCACTACTGT-TTAGGG-TGA-CAGAATCTGCAATCTTCAACCAATTCCACTA-TG
1 AAATCTGCTTCTCCACTGTATT-GGGAAGATAAGATTC-ACCATCTTCGATCTGCTCCACTACT-
* * * * * * * * * ** *
29024592 GCTTAGGGAGATAGGA-CT--AATGGCTTAAATCTGCTTC-TTCACTG-TATTGGGAAAATAAGA
63 GCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCCACT-ACTGCT-TAGGG-TGATAGGA
*
29024652 TTCACCAT--CTT
123 CT-A--ATGGCTT
** * * * * * * * * *** * * *
29024663 CCATCTACTCCACTACTGCT-TAGGG-TGA-CAGAATCTGTAATCTTCAACCTACTCCACTACTG
1 AAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTC-ACCATCTTCGATCTGCTCCACTACTG
* ** * * * * **
29024725 CTTAGGGAGATTGGA-CT--AATGGCTTAAATCTGCTTCTCCACTA-TTCTT-GAGAAGATA-GA
64 CTTAGGGTGACAGAATCTGCAAT--CTTCAA-C--CTACTCCACTACTGCTTAG-GGTGATAGGA
*
29024784 TTCACCAT--CTT
123 CT-A--ATGGCTT
* * * * * * * * * * *
29024795 -CATCCGCTCCACTACTG-CTTAGG-TGACAAGATTCACCATCTTCAATCCGCTCCACTACTGCT
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
*
29024857 TAGGGTGACAGAATCTGCAATCTTCAACCTACTTCACTACTGCTTAGGGTGATAGGACTAATGGC
66 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
29024922 TT
131 TT
** * *
29024924 AAATCTGCTTCTCCACTGTATTATGCAGATAAGATTCATCATCTTCGATCTGCTCCACTACTGCT
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
** * * *
29024989 TAACGTGACAGAATCTGGAATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGGCTAATGGC
66 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
29025054 TT
131 TT
* * * *
29025056 AAATCTGGTTCTCCACTGTCTTGGGAAGATAAGATTCACCATGTTCGATCTGCTCCACTACAGCT
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
*
29025121 TAGGGTGAGAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
66 TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
29025186 TT
131 TT
* * * *
29025188 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGACTCACCATATTCGATCTGCAT-TACTACTGG
1 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGC
* * *
29025252 TTAGGGTGGCAGAATCTGTAATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTA
65 TTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTA
29025313 TAACATTCTA
Statistics
Matches: 2740, Mismatches: 369, Indels: 105
0.85 0.11 0.03
Matches are distributed among these distances:
127 2 0.00
128 9 0.00
129 16 0.01
130 55 0.02
131 64 0.02
132 2522 0.92
133 45 0.02
134 4 0.00
135 16 0.01
136 3 0.00
137 4 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (132 bp):
AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
TAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGC
TT
Found at i:29024512 original size:220 final size:219
Alignment explanation
Indices: 29024227--29025128 Score: 796
Period size: 220 Copynumber: 4.1 Consensus size: 219
29024217 AATCTTCAAC
* *
29024227 CTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTGTTGGGA
1 CTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGA
* *
29024292 AGATAAGATTCATCATATTCGATCTGCTGCACTACTGCTTAGGGTGACAGAGTCTGCAATCTTCA
66 AGATAAGATTCATCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCA
29024357 ACCTACTCCACTACTGCTTAGGGTGATTA-GACTAATGGCTTAAATCTGCTTCTCCACTGTATTG
131 ACC-ACTCCACTACTGCTTAGGGTGA-TAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTG
* *
29024421 GGATGATAGGATTCACCATCGTCGAT
194 GGAAGATAAGATTCACCATCGTCGAT
* * * * *
29024447 CTGCTCCACTACTGCTTAGAGTGATATGACTAATAGCTTAAATCTACTTCTGCACTGTATTGGGA
1 CTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGA
* * * * * *
29024512 AAATATGATTCATCATATTCCATCTGTTTCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCA
66 AGATAAGATTCATCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCA
* * *
29024577 ACCAATTCCACTA-TGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTTCACTGTATTG
131 ACC-ACTCCACTACT-GCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTG
* * *
29024641 GGAAAATAAGATTCACCATCTTCCAT
194 GGAAGATAAGATTCACCATCGTCGAT
* * * * * * * *
29024667 CTACTCCACTACTGCTTAGGGTGACAGAATCTGTAAT--CTTCAACCTACTCCACTACTGCT-TA
1 CTACTCCACTACTGCTTAGGGTGATAGGA-C--TAATGGCTTAAATCTACTTCTCCACTG-TATT
** * * * * * * ** * * *
29024729 GGG-AGATTGGACTAATGGCTTAAATC--TGCTTCTCCACTA-TTCTT-GAGAAGATAGATTC-A
62 GGGAAGATAAGATTCAT--CAT-ATTCGAT-CTGCTCCACTACTGCTTAG-GGTGACAGAATCTG
* * * * * * * * * *
29024788 CCATCTTCATCCGCTCCACTACTGCTTA-GGTGACAAGATTCACCAT--CTTCAATCCGCTCCAC
122 CAATCTTCAACCACTCCACTACTGCTTAGGGTGATAGGACT-A--ATGGCTTAAATCTGCTTCTC
* * * * * * * * * *
29024850 TACTGCT-TAGGG-TGA-CAGAATCTGCAATCTTCAAC
184 CACTG-TATTGGGAAGATAAGATTC-ACCATCGTCGAT
* * ** *
29024885 CTACTTCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTATGC
1 CTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGA
* ** *
29024950 AGATAAGATTCATCATCTTCGATCTGCTCCACTACTGCTTAACGTGACAGAATCTGGAATCTTCA
66 AGATAAGATTCATCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCA
* * *
29025015 ACCGACTCCACTACTGCTTAGGGTGATAGGGCTAATGGCTTAAATCTGGTTCTCCACTGTCTTGG
131 ACC-ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGG
29025080 GAAGATAAGATTCACCAT-GTTCGAT
195 GAAGATAAGATTCACCATCG-TCGAT
* *
29025105 CTGCTCCACTACAGCTTAGGGTGA
1 CTACTCCACTACTGCTTAGGGTGA
29025129 GAGAATCTGC
Statistics
Matches: 519, Mismatches: 129, Indels: 68
0.72 0.18 0.09
Matches are distributed among these distances:
215 6 0.01
216 13 0.03
217 37 0.07
218 62 0.12
219 70 0.13
220 274 0.53
221 39 0.08
222 11 0.02
223 7 0.01
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (219 bp):
CTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGA
AGATAAGATTCATCATATTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCA
ACCACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGG
AAGATAAGATTCACCATCGTCGAT
Found at i:29024537 original size:88 final size:88
Alignment explanation
Indices: 29024362--29024558 Score: 252
Period size: 88 Copynumber: 2.2 Consensus size: 88
29024352 CTTCAACCTA
* * **
29024362 CTCCACTACTGCTTAGGGTGATTAGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGATGA
1 CTCCACTACTGCTTAGGGTGATTAGACTAATAGCTTAAATCTACTTCTCCACTGTATTGGGAAAA
* *
29024427 TAGGATTCACCATCGTCGATCTG
66 TAGGATTCACCATAGTCCATCTG
* *
29024450 CTCCACTACTGCTTAGAGTGA-TATGACTAATAGCTTAAATCTACTTCTGCACTGTATTGGGAAA
1 CTCCACTACTGCTTAGGGTGATTA-GACTAATAGCTTAAATCTACTTCTCCACTGTATTGGGAAA
* * *
29024514 ATATGATTCATCATATTCCATCTG
65 ATAGGATTCACCATAGTCCATCTG
* * *
29024538 TTTCACTACTGTTTAGGGTGA
1 CTCCACTACTGCTTAGGGTGA
29024559 CAGAATCTGC
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
87 2 0.02
88 91 0.98
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (88 bp):
CTCCACTACTGCTTAGGGTGATTAGACTAATAGCTTAAATCTACTTCTCCACTGTATTGGGAAAA
TAGGATTCACCATAGTCCATCTG
Found at i:29024721 original size:44 final size:43
Alignment explanation
Indices: 29024653--29024908 Score: 148
Period size: 44 Copynumber: 5.9 Consensus size: 43
29024643 AAAATAAGAT
* * *
29024653 TCACCATCTTCCATCTACTCCACTACTGCTTAGGGTGACAGAA
1 TCACAATCTTCAACCTACTCCACTACTGCTTAGGGTGACAGAA
** * ** *
29024696 TCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGAGATTGGA
1 TC-ACAATCTTCAACCTACTCCACTACTGCTTAGGGTGACAGAA
* * * * ** * *
29024740 -C-TAATGGCTTAAATCTGCTTCTCCACTA-TTCTT-GAGAAGATAGAT
1 TCACAAT--CTTCAA-C--CTACTCCACTACTGCTTAG-GGTGACAGAA
* * * *
29024785 TCACCATCTTCATCC-GCTCCACTACTGCTTA-GGTGACAAGAT
1 TCACAATCTTCAACCTACTCCACTACTGCTTAGGGTGAC-AGAA
* *
29024827 TCACCATCTTCAATCC-GCTCCACTACTGCTTAGGGTGACAGAA
1 TCACAATCTTCAA-CCTACTCCACTACTGCTTAGGGTGACAGAA
* *
29024870 TCTGCAATCTTCAACCTACTTCACTACTGCTTAGGGTGA
1 TC-ACAATCTTCAACCTACTCCACTACTGCTTAGGGTGA
29024909 TAGGACTAAT
Statistics
Matches: 166, Mismatches: 31, Indels: 31
0.73 0.14 0.14
Matches are distributed among these distances:
41 15 0.09
42 21 0.13
43 33 0.20
44 70 0.42
45 14 0.08
46 11 0.07
47 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (43 bp):
TCACAATCTTCAACCTACTCCACTACTGCTTAGGGTGACAGAA
Found at i:29024830 original size:42 final size:44
Alignment explanation
Indices: 29024781--29024908 Score: 165
Period size: 44 Copynumber: 3.0 Consensus size: 44
29024771 TTGAGAAGAT
29024781 AGATTCACCATCTTC-ATCCGCTCCACTACTGCTTA-GGTGACA
1 AGATTCACCATCTTCAATCCGCTCCACTACTGCTTAGGGTGACA
29024823 AGATTCACCATCTTCAATCCGCTCCACTACTGCTTAGGGTGAC-
1 AGATTCACCATCTTCAATCCGCTCCACTACTGCTTAGGGTGACA
* * * * *
29024866 AGAATCTGCAATCTTCAA-CCTACTTCACTACTGCTTAGGGTGA
1 AGATTC-ACCATCTTCAATCC-GCTCCACTACTGCTTAGGGTGA
29024909 TAGGACTAAT
Statistics
Matches: 77, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
42 15 0.19
43 27 0.35
44 35 0.45
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (44 bp):
AGATTCACCATCTTCAATCCGCTCCACTACTGCTTAGGGTGACA
Found at i:29024895 original size:87 final size:84
Alignment explanation
Indices: 29024648--29024905 Score: 220
Period size: 87 Copynumber: 3.0 Consensus size: 84
29024638 TTGGGAAAAT
* * *
29024648 AAGATTCACCATCTTCCATCTACTCCACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAACCT
1 AAGATTCACCATCTTCAATCCACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
29024713 ACTCCACTACTGCTTAGGG
66 ACTCCACTACTGCTTAGGG
* * * * * ** * * * *
29024732 -AGATTGGACTAATGGCTTAAATCTGCTTCTCCACTA-TTCTT-GAGAAGATAGATTC-ACCATC
1 AAGATT-CAC-CAT--CTTCAATC--C-ACTCCACTACTGCTTAG-GGTGACAGAATCTGCAATC
* *
29024793 TTCATCC-GCTCCACTACTGCTTAGGTG
58 TTCAACCTACTCCACTACTGCTTAGG-G
*
29024820 ACAAGATTCACCATCTTCAATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAAC
1 --AAGATTCACCATCTTCAATCCACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAAC
*
29024885 CTACTTCACTACTGCTTAGGG
64 CTACTCCACTACTGCTTAGGG
29024906 TGATAGGACT
Statistics
Matches: 128, Mismatches: 30, Indels: 30
0.68 0.16 0.16
Matches are distributed among these distances:
83 5 0.04
84 10 0.08
85 15 0.12
86 12 0.09
87 46 0.36
88 11 0.09
89 14 0.11
90 10 0.08
91 5 0.04
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (84 bp):
AAGATTCACCATCTTCAATCCACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
ACTCCACTACTGCTTAGGG
Found at i:29024938 original size:174 final size:176
Alignment explanation
Indices: 29024648--29025040 Score: 555
Period size: 174 Copynumber: 2.2 Consensus size: 176
29024638 TTGGGAAAAT
* ** *
29024648 AAGATTCACCATCTTCCATCTACTCCACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAACCT
1 AAGATTCACCATCTTCAATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
* * *
29024713 ACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTTCTCCACTATTCTTGA-GA
66 ACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACT-GTATT-ATGA
*
29024777 AGAT-AGATTCACCATCTTC-ATCCGCTCCACTACTGCTT-AGGTGAC
129 AGATAAGATTCACCATCTTCGATCCGCTCCACTACTGCTTAACGTGAC
29024822 AAGATTCACCATCTTCAATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
1 AAGATTCACCATCTTCAATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
* * *
29024887 ACTTCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTATGCAG
66 ACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTATGAAG
* *
29024952 ATAAGATTCATCATCTTCGATCTGCTCCACTACTGCTTAACGTGAC
131 ATAAGATTCACCATCTTCGATCCGCTCCACTACTGCTTAACGTGAC
* ***
29024998 -AGAATCTGGAATCTTCAA-CCGACTCCACTACTGCTTAGGGTGA
1 AAGATTC-ACCATCTTCAATCCG-CTCCACTACTGCTTAGGGTGA
29025041 TAGGGCTAAT
Statistics
Matches: 196, Mismatches: 17, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
172 1 0.01
173 8 0.04
174 126 0.64
175 26 0.13
176 35 0.18
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (176 bp):
AAGATTCACCATCTTCAATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
ACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTATGAAG
ATAAGATTCACCATCTTCGATCCGCTCCACTACTGCTTAACGTGAC
Found at i:29025091 original size:438 final size:440
Alignment explanation
Indices: 29024453--29025304 Score: 1187
Period size: 438 Copynumber: 1.9 Consensus size: 440
29024443 CGATCTGCTC
* * * *
29024453 CACTACTGCTTAGAGTGATATGACTAATAGCTTAAATCTACTTCTGCACTGTATTGGGAAAATAT
1 CACTACTGCTTAGAGTGATAGGACTAATAGCTTAAATCTACTTCTCCACTGTATTAGGAAAATAA
* * * ** *
29024518 GATTCATCATATTCCATCTGTTTCACTACTGTTTAGGGTGACAGAATCTGCAATCTTCAACCAAT
66 GATTCATCATATTCCATCTGCTCCACTACTGCTTAACGTGACAGAATCTGCAATCTTCAACCAAC
*
29024583 TCCACTATGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTTCACTGTATTGGGAAAAT
131 TCCACTATGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAAT
* *
29024648 AAGATTCACCATCTTCCATCTACTCCACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAACCT
196 AAGATTCACCATCTTCCATCTACTCCACTACAGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
* * *
29024713 ACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTTCTCCACTATTCTTGAGAA
261 ACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACT-GTATTGAGAA
* * * *
29024778 GAT-AGATTCACCATCTTC-ATCCGC-TCCACTACTGCTTA-GGTGACAAGATTC-ACCATCTTC
325 GATAAGACTCACCATATTCGATCCGCAT-CACTACTGCTTAGGGTGAC-AGAATCTACAATCTTC
29024838 AATCCG-CTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTT
388 AA-CCGACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTT
* * * * * *
29024891 CACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTATGCAGATAA
1 CACTACTGCTTAGAGTGATAGGACTAATAGCTTAAATCTACTTCTCCACTGTATTAGGAAAATAA
* * * *
29024956 GATTCATCATCTTCGATCTGCTCCACTACTGCTTAACGTGACAGAATCTGGAATCTTCAACCGAC
66 GATTCATCATATTCCATCTGCTCCACTACTGCTTAACGTGACAGAATCTGCAATCTTCAACCAAC
* * * * *
29025021 TCCACTACT-GCTTAGGGTGATAGGGCTAATGGCTTAAATCTGGTTCTCCACTGTCTTGGGAAGA
131 TCCACTA-TGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAA
* * * *
29025085 TAAGATTCACCATGTTCGATCTGCTCCACTACAGCTTAGGGTGAGAGAATCTGCAATCTTCAACC
195 TAAGATTCACCATCTTCCATCTACTCCACTACAGCTTAGGGTGACAGAATCTGCAATCTTCAACC
* *
29025150 TACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAA
260 TACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGAGAA
* * * * **
29025215 GATAAGACTCACCATATTCGATCTGCATTACTACTGGTTAGGGTGGCAGAATCTGTAATCTTCAA
325 GATAAGACTCACCATATTCGATCCGCATCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAA
29025280 CCGACTCCACTACTGCTTAGGGTGA
390 CCGACTCCACTACTGCTTAGGGTGA
29025305 TAGGACTATA
Statistics
Matches: 360, Mismatches: 47, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
437 10 0.03
438 291 0.81
439 24 0.07
440 35 0.10
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (440 bp):
CACTACTGCTTAGAGTGATAGGACTAATAGCTTAAATCTACTTCTCCACTGTATTAGGAAAATAA
GATTCATCATATTCCATCTGCTCCACTACTGCTTAACGTGACAGAATCTGCAATCTTCAACCAAC
TCCACTATGGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAAAT
AAGATTCACCATCTTCCATCTACTCCACTACAGCTTAGGGTGACAGAATCTGCAATCTTCAACCT
ACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGAGAAG
ATAAGACTCACCATATTCGATCCGCATCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAAC
CGACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTT
Found at i:29029247 original size:65 final size:65
Alignment explanation
Indices: 29029166--29029296 Score: 194
Period size: 65 Copynumber: 2.0 Consensus size: 65
29029156 GGCAAAGCAC
29029166 GGGAAACAAGATGAACAAAGCTAAAACACAAATGGAAAAGACTCT-AACCTTTC-GATTACTAAC
1 GGGAAACAAGATGAACAAAGCTAAAACACAAATGGAAAAGACT-TGAACCTTTCAG-TTACTAAC
29029229 AT
64 AT
** * *
29029231 GGGAAACAAGATGAACAAAGCTAAAACATGAATGGAAAGGACTTGAACCTTTCAGTTATTAACAT
1 GGGAAACAAGATGAACAAAGCTAAAACACAAATGGAAAAGACTTGAACCTTTCAGTTACTAACAT
29029296 G
1 G
29029297 ACCTCTGAAC
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
64 1 0.02
65 58 0.97
66 1 0.02
ACGTcount: A:0.46, C:0.16, G:0.18, T:0.20
Consensus pattern (65 bp):
GGGAAACAAGATGAACAAAGCTAAAACACAAATGGAAAAGACTTGAACCTTTCAGTTACTAACAT
Found at i:29035202 original size:3 final size:3
Alignment explanation
Indices: 29035196--29035224 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
29035186 TTTTTGTCAT
29035196 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
29035225 TAAAAGAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:29035955 original size:18 final size:19
Alignment explanation
Indices: 29035912--29035955 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
29035902 TAGAGCGCCT
*
29035912 CAAAATAAAATTGATATTA
1 CAAAATAAAATTGATACTA
* *
29035931 CACAATAAAATT-TTACTA
1 CAAAATAAAATTGATACTA
29035949 CAAAATA
1 CAAAATA
29035956 CTCATTCTAC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (19 bp):
CAAAATAAAATTGATACTA
Found at i:29036928 original size:16 final size:18
Alignment explanation
Indices: 29036889--29036922 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
29036879 TAAGTTTATA
29036889 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
29036906 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
29036923 AATTTAGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:29038953 original size:30 final size:30
Alignment explanation
Indices: 29038917--29039315 Score: 474
Period size: 30 Copynumber: 13.2 Consensus size: 30
29038907 AACCAAAGGA
*
29038917 ATTTGTATATAGATATACATTGCCGAATTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
*
29038947 ATTTGTATTTAGATATACATTGCCGAACTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
* * *
29038977 ATTCGTATTTGGATATACATTGCTGAATTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
*
29039007 ATTTGTATATAGATATACATTGCCGAATTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
* * * *
29039037 ATTTGTATTTGGATATACATTGTCAAATCG
1 ATTTGTATTTAGATATACATTGCCGAATTG
* *
29039067 ATTCGTATTTGGATATACATTGCCGAATTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
* * *
29039097 ATTTGTATATAGATATACATTACCGAATTT
1 ATTTGTATTTAGATATACATTGCCGAATTG
* * * *
29039127 ATTTTTATTTGGATATACATTACTGAATTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
* *
29039157 ATTCGTATTTGGATATACATTGCCGAATTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
* * *
29039187 ATTTGTATATAGATATACATTGTCGAATTT
1 ATTTGTATTTAGATATACATTGCCGAATTG
* * *
29039217 ATTTGTATATATATATACATTGCCAAATTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
* *
29039247 ATTCGTATTTGGATATACATTGCCGAATTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
* * *
29039277 ATTTTTATATGTATACATATATATTGCCGAATTG
1 A--TTTGTAT-T-TAGATATACATTGCCGAATTG
29039311 ATTTG
1 ATTTG
29039316 AGCATTGGAT
Statistics
Matches: 312, Mismatches: 53, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
30 284 0.91
32 8 0.03
33 1 0.00
34 19 0.06
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.43
Consensus pattern (30 bp):
ATTTGTATTTAGATATACATTGCCGAATTG
Found at i:29039024 original size:90 final size:90
Alignment explanation
Indices: 29038917--29039315 Score: 582
Period size: 90 Copynumber: 4.4 Consensus size: 90
29038907 AACCAAAGGA
*
29038917 ATTTGTATATAGATATACATTGCCGAATTGATTTGTATTTAGATATACATTGCCGAACTGATTCG
1 ATTTGTATATAGATATACATTGCCGAATTGATTTGTATTTAGATATACATTGCCGAATTGATTCG
*
29038982 TATTTGGATATACATTGCTGAATTG
66 TATTTGGATATACATTGCCGAATTG
* * * *
29039007 ATTTGTATATAGATATACATTGCCGAATTGATTTGTATTTGGATATACATTGTCAAATCGATTCG
1 ATTTGTATATAGATATACATTGCCGAATTGATTTGTATTTAGATATACATTGCCGAATTGATTCG
29039072 TATTTGGATATACATTGCCGAATTG
66 TATTTGGATATACATTGCCGAATTG
* * * * * *
29039097 ATTTGTATATAGATATACATTACCGAATTTATTTTTATTTGGATATACATTACTGAATTGATTCG
1 ATTTGTATATAGATATACATTGCCGAATTGATTTGTATTTAGATATACATTGCCGAATTGATTCG
29039162 TATTTGGATATACATTGCCGAATTG
66 TATTTGGATATACATTGCCGAATTG
* * * * *
29039187 ATTTGTATATAGATATACATTGTCGAATTTATTTGTATATATATATACATTGCCAAATTGATTCG
1 ATTTGTATATAGATATACATTGCCGAATTGATTTGTATTTAGATATACATTGCCGAATTGATTCG
29039252 TATTTGGATATACATTGCCGAATTG
66 TATTTGGATATACATTGCCGAATTG
* * *
29039277 ATTTTTATATGTATACATATATATTGCCGAATTGATTTG
1 A--TTTGTA--TATAGATATACATTGCCGAATTGATTTG
29039316 AGCATTGGAT
Statistics
Matches: 277, Mismatches: 28, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
90 248 0.90
92 5 0.02
94 24 0.09
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.43
Consensus pattern (90 bp):
ATTTGTATATAGATATACATTGCCGAATTGATTTGTATTTAGATATACATTGCCGAATTGATTCG
TATTTGGATATACATTGCCGAATTG
Found at i:29045912 original size:30 final size:30
Alignment explanation
Indices: 29045876--29046240 Score: 466
Period size: 30 Copynumber: 12.2 Consensus size: 30
29045866 GTATATGTTT
*
29045876 TATACATTACCGAATTGATTTGTATATAGA
1 TATACATTGCCGAATTGATTTGTATATAGA
*
29045906 TATACATTGCCGAATTGATTTGTATTTAGA
1 TATACATTGCCGAATTGATTTGTATATAGA
* * *
29045936 TATACATTGCCGAATTGATTCGTATTTGGA
1 TATACATTGCCGAATTGATTTGTATATAGA
* *
29045966 TATATATTGCTGAATTGATTTGTATATAGA
1 TATACATTGCCGAATTGATTTGTATATAGA
* *
29045996 TATACATTGCCGAATTGATTTGTATTTGGA
1 TATACATTGCCGAATTGATTTGTATATAGA
* * * *
29046026 TATACATTGCCGAATTTATTCGTATTTGGA
1 TATACATTGCCGAATTGATTTGTATATAGA
29046056 TATACATTGCCGAATTGATTTGTATATAGA
1 TATACATTGCCGAATTGATTTGTATATAGA
* * *
29046086 TATACTTTGCCGAATTGATTTGTATTTGGA
1 TATACATTGCCGAATTGATTTGTATATAGA
* *
29046116 TATACATTGCCTAATTGATTTGCATATAGA
1 TATACATTGCCGAATTGATTTGTATATAGA
*
29046146 TATACATTGCCGAATTGATTAGTATAT-GCA
1 TATACATTGCCGAATTGATTTGTATATAG-A
** * * * *
29046176 TATACATTATCGAATTTATTCGTATTTGGA
1 TATACATTGCCGAATTGATTTGTATATAGA
*
29046206 TATACATCGCCGAATTGATTTGTATAT-G-
1 TATACATTGCCGAATTGATTTGTATATAGA
29046234 TATACAT
1 TATACAT
29046241 ATATATTGCC
Statistics
Matches: 292, Mismatches: 41, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
28 7 0.02
29 2 0.01
30 282 0.97
31 1 0.00
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.42
Consensus pattern (30 bp):
TATACATTGCCGAATTGATTTGTATATAGA
Found at i:29046040 original size:90 final size:90
Alignment explanation
Indices: 29045876--29046230 Score: 532
Period size: 90 Copynumber: 3.9 Consensus size: 90
29045866 GTATATGTTT
* *
29045876 TATACATTACCGAATTGATTTGTATATAGATATACATTGCCGAATTGATTTGTATTTAGATATAC
1 TATACATTGCCGAATTGATTTGTATATAGATATACATTGCCGAATTGATTTGTATTTGGATATAC
29045941 ATTGCCGAATTGATTCGTATTTGGA
66 ATTGCCGAATTGATTCGTATTTGGA
* *
29045966 TATATATTGCTGAATTGATTTGTATATAGATATACATTGCCGAATTGATTTGTATTTGGATATAC
1 TATACATTGCCGAATTGATTTGTATATAGATATACATTGCCGAATTGATTTGTATTTGGATATAC
*
29046031 ATTGCCGAATTTATTCGTATTTGGA
66 ATTGCCGAATTGATTCGTATTTGGA
*
29046056 TATACATTGCCGAATTGATTTGTATATAGATATACTTTGCCGAATTGATTTGTATTTGGATATAC
1 TATACATTGCCGAATTGATTTGTATATAGATATACATTGCCGAATTGATTTGTATTTGGATATAC
* * * * *
29046121 ATTGCCTAATTGATTTGCATATAGA
66 ATTGCCGAATTGATTCGTATTTGGA
* ** * *
29046146 TATACATTGCCGAATTGATTAGTATAT-GCATATACATTATCGAATTTATTCGTATTTGGATATA
1 TATACATTGCCGAATTGATTTGTATATAG-ATATACATTGCCGAATTGATTTGTATTTGGATATA
* *
29046210 CATCGCCGAATTGATTTGTAT
65 CATTGCCGAATTGATTCGTAT
29046231 ATGTATACAT
Statistics
Matches: 241, Mismatches: 23, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
89 1 0.00
90 240 1.00
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (90 bp):
TATACATTGCCGAATTGATTTGTATATAGATATACATTGCCGAATTGATTTGTATTTGGATATAC
ATTGCCGAATTGATTCGTATTTGGA
Found at i:29051083 original size:119 final size:119
Alignment explanation
Indices: 29050872--29051111 Score: 453
Period size: 119 Copynumber: 2.0 Consensus size: 119
29050862 AACTTTAACA
29050872 CACAACATTGGAGCATATCCTCGGGTACCTGAATTACTCGCTTAGACTGACCATCGGTCTGTGGA
1 CACAACATTGGAGCATATCCTCGGGTACCTGAATTACTCGCTTAGACTGACCATCGGTCTGTGGA
*
29050937 TGAAAGACTGTGCTAAAATGCAATCAAGTGCCCAAATCTCCGTGCAATTTACTC
66 TGAAAGACTGTGCTAAAATGCAATCAAGAGCCCAAATCTCCGTGCAATTTACTC
29050991 CACAACATTGGAGCATATCCTCGGGTACCTGAATTACTCGCTTAGACTGACCATCGGTCTGTGGA
1 CACAACATTGGAGCATATCCTCGGGTACCTGAATTACTCGCTTAGACTGACCATCGGTCTGTGGA
* *
29051056 TGAAAGACTGTGCTGAAATGCAGTCAAGAGCCCAAATCTCCGTGCAATTTACTC
66 TGAAAGACTGTGCTAAAATGCAATCAAGAGCCCAAATCTCCGTGCAATTTACTC
29051110 CA
1 CA
29051112 AAATCGAGAA
Statistics
Matches: 118, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
119 118 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (119 bp):
CACAACATTGGAGCATATCCTCGGGTACCTGAATTACTCGCTTAGACTGACCATCGGTCTGTGGA
TGAAAGACTGTGCTAAAATGCAATCAAGAGCCCAAATCTCCGTGCAATTTACTC
Found at i:29056432 original size:57 final size:57
Alignment explanation
Indices: 29056358--29056479 Score: 226
Period size: 57 Copynumber: 2.1 Consensus size: 57
29056348 CTAGTTCAAC
* *
29056358 CACATATAAACTCTTAATAATTCATTTCAACTAATATTAAAGTACTTCATTAAAATA
1 CACAAATAAACTCTTAATAATTCATTTCAACTAATATAAAAGTACTTCATTAAAATA
29056415 CACAAATAAACTCTTAATAATTCATTTCAACTAATATAAAAGTACTTCATTAAAATA
1 CACAAATAAACTCTTAATAATTCATTTCAACTAATATAAAAGTACTTCATTAAAATA
29056472 CACAAATA
1 CACAAATA
29056480 GGTGAAGTTC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 63 1.00
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.34
Consensus pattern (57 bp):
CACAAATAAACTCTTAATAATTCATTTCAACTAATATAAAAGTACTTCATTAAAATA
Found at i:29063330 original size:114 final size:114
Alignment explanation
Indices: 29063018--29063702 Score: 1095
Period size: 114 Copynumber: 6.0 Consensus size: 114
29063008 AAAATAAGCA
*** * *
29063018 TTAGCGGCGTTTTCCAGAAAGCGTCGC-AAAATACCTAAGCCCAACGACGCCGTTTTCCGAGCTT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* * * **
29063082 TCGAGGATTTAGCGGCGTTTTTAAGAAAGCATCGCTAATGCTCAGGGCT
66 TCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCT
* * *
29063131 TTAGCGGCGTTTTTGAGAAAGCGCCACAAAAA-ACCTAAGCCCAACGACGCCGTTTTCTAAGCTT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* * *
29063195 TCGGGGATTTAGTAGCGTTTTTAGGTAAGCGCCGCTAATGCTCAGGTCT
66 TCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCT
29063244 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
*
29063309 TCGGGGATTTAGTGGCGTTTTTAAGTAAGTGCCGCTAATGCTCAGGGCT
66 TCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCT
29063358 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* *
29063423 TTGGGGATTTAGTGGCGTTTTTAAGTAAGCGTCGCTAATGCTCAGGGCT
66 TCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCT
* *
29063472 TTAGCGGCGTATTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAACTACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* * *
29063537 TTGGGGATTTAGTGGGGTTTTTAAGTAATCGCCGCTAATGCTCAGGGCT
66 TCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCT
* * *
29063586 TTAGCGGCGTTTTTGGGAAATCGCCGCAAAAATACATAAGCCCAACAACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* *
29063651 TCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTTAGGGAT
66 TCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCT
29063700 TTA
1 TTA
29063703 AAATAATTTA
Statistics
Matches: 532, Mismatches: 38, Indels: 3
0.93 0.07 0.01
Matches are distributed among these distances:
113 124 0.23
114 408 0.77
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (114 bp):
TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
TCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCT
Found at i:29064284 original size:14 final size:15
Alignment explanation
Indices: 29064251--29064284 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
29064241 TAAGTTTTAT
29064251 AGATTATGGAATTAG
1 AGATTATGGAATTAG
*
29064266 GGATTATGG-ATTAG
1 AGATTATGGAATTAG
29064280 AGATT
1 AGATT
29064285 CTGGTTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.35, C:0.00, G:0.29, T:0.35
Consensus pattern (15 bp):
AGATTATGGAATTAG
Found at i:29064326 original size:14 final size:14
Alignment explanation
Indices: 29064307--29064371 Score: 58
Period size: 14 Copynumber: 4.6 Consensus size: 14
29064297 TTAATGTGAT
* *
29064307 TTAAGGTTTATGGG
1 TTAAGGGTTAGGGG
29064321 TTAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
* **
29064335 TTAGGGGTTAGATG
1 TTAAGGGTTAGGGG
* *
29064349 TTAAGAGTTAGGGA
1 TTAAGGGTTAGGGG
*
29064363 TTTAGGGTT
1 TTAAGGGTT
29064372 TATAAATTCG
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
14 39 1.00
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.37
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:29064478 original size:89 final size:89
Alignment explanation
Indices: 29064385--29064709 Score: 351
Period size: 89 Copynumber: 3.7 Consensus size: 89
29064375 AAATTCGGTG
* * * *
29064385 TTAGGTTAGAGTTTAGGGTTTAGATTAATTAGTGTATTTTAA-TTATATATTAAAGAAGGTTTAG
1 TTAGGTTAGGGTTTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAAAGTTTAG
29064449 GGGTTAGGGGTTAAGGGTTAGGGAT
66 GGGTTAGGGGTT-AGGGTTAGGGAT
* *
29064474 TTAGGATCGGGTCATGGTTTAGGGTTTAGATTAATTATTGTTTTTTAATTTATATATTAAATAAA
1 TTAGG-T----T-AGGGTTTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAAA
29064539 GTTTAGGGGTTA-GGG-T----TTAGGGAT
60 GTTTAGGGGTTAGGGGTTAGGGTTAGGGAT
* * * *
29064563 TTGGGGTCGGGTTTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATATTAACTAAAGTTTAG
1 TTAGGTTAGGGTTTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAAAGTTTAG
* *
29064628 GGGTTAGGGGTTAGGGATTTGGGGT
66 GGGTTAGGGGTTAGGG-TTAGGGAT
** * * * **
29064653 CGA-GTTAGGGTTTAAGATTTGGATTAATTAGTACTTTTTAATTTATATATTAAATAA
1 TTAGGTTAGGGTTTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAA
29064710 GTTCTTTATA
Statistics
Matches: 197, Mismatches: 25, Indels: 28
0.79 0.10 0.11
Matches are distributed among these distances:
83 60 0.30
84 4 0.02
85 1 0.01
89 63 0.32
90 7 0.04
94 2 0.01
95 34 0.17
96 26 0.13
ACGTcount: A:0.28, C:0.02, G:0.27, T:0.43
Consensus pattern (89 bp):
TTAGGTTAGGGTTTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAAAGTTTAG
GGGTTAGGGGTTAGGGTTAGGGAT
Found at i:29064520 original size:95 final size:86
Alignment explanation
Indices: 29064395--29064709 Score: 340
Period size: 83 Copynumber: 3.6 Consensus size: 86
29064385 TTAGGTTAGA
* * *
29064395 GTTTAGGGTTTAGATTAATTAGTGTATTTTAA-TTATATATTAAAGAAGGTTTAGGGGTTAGGGG
1 GTTTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAAAGTTTAGGGGTTAGGGG
*
29064459 TTAAGGGTTAGGGATTTAGGATCGGGTCATG
66 TT-A---TTAGGGATTT--G---GGGTC-GG
*
29064490 GTTTAGGGTTTAGATTAATTATTGTTTTTTAATTTATATATTAAATAAAGTTTAGGGGTTA-GGG
1 GTTTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAAAGTTTAGGGGTTAGGGG
29064554 -T-TTAGGGATTTGGGGTCGG
66 TTATTAGGGATTTGGGGTCGG
*
29064573 GTTTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATATTAACTAAAGTTTAGGGGTTAGGGG
1 GTTTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAAAGTTTAGGGGTTAGGGG
*
29064638 ---TTAGGGATTTGGGGTCGA
66 TTATTAGGGATTTGGGGTCGG
**
29064656 G-TTAGGGTTTAAGATTTGGATTAATTAGTACTTTTTAATTTATATATTAAATAA
1 GTTTAGGGTTT---A----GATTAATTAGTGTTTTTTAATTTATATATTAAATAA
29064710 GTTCTTTATA
Statistics
Matches: 200, Mismatches: 11, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
82 9 0.05
83 78 0.39
84 8 0.04
85 1 0.00
87 1 0.00
89 43 0.22
94 1 0.00
95 33 0.17
96 26 0.13
ACGTcount: A:0.28, C:0.02, G:0.27, T:0.43
Consensus pattern (86 bp):
GTTTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAAAGTTTAGGGGTTAGGGG
TTATTAGGGATTTGGGGTCGG
Found at i:29064836 original size:22 final size:22
Alignment explanation
Indices: 29064811--29064854 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
29064801 TAAAAAATTG
*
29064811 TAAAAATTATAAAA-AAATAAAA
1 TAAAAA-TAAAAAATAAATAAAA
29064833 TAAAAATAAAAAATAAATAAAA
1 TAAAAATAAAAAATAAATAAAA
29064855 ACAATAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (22 bp):
TAAAAATAAAAAATAAATAAAA
Found at i:29064837 original size:11 final size:10
Alignment explanation
Indices: 29064821--29064855 Score: 52
Period size: 11 Copynumber: 3.3 Consensus size: 10
29064811 TAAAAATTAT
29064821 AAAAAAATAA
1 AAAAAAATAA
29064831 AATAAAAATAA
1 AA-AAAAATAA
29064842 AAAATAAATAA
1 AAAA-AAATAA
29064853 AAA
1 AAA
29064856 CAATAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 4 0.17
11 19 0.83
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:29064837 original size:13 final size:12
Alignment explanation
Indices: 29064819--29064863 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 12
29064809 TGTAAAAATT
29064819 ATAAAAAAATAAA
1 ATAAAAAAA-AAA
29064832 ATAAAAATAAAAA
1 ATAAAAA-AAAAA
*
29064845 ATAAATAAAAACA
1 ATAAA-AAAAAAA
29064858 ATAAAA
1 ATAAAA
29064864 TTTTTATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
12 1 0.03
13 24 0.83
14 4 0.14
ACGTcount: A:0.82, C:0.02, G:0.00, T:0.16
Consensus pattern (12 bp):
ATAAAAAAAAAA
Found at i:29064843 original size:18 final size:17
Alignment explanation
Indices: 29064822--29064855 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
29064812 AAAAATTATA
29064822 AAAAAATAAAATAAAAAT
1 AAAAAAT-AAATAAAAAT
29064840 AAAAAATAAATAAAAA
1 AAAAAATAAATAAAAA
29064856 CAATAAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (17 bp):
AAAAAATAAATAAAAAT
Found at i:29064863 original size:18 final size:18
Alignment explanation
Indices: 29064822--29064864 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
29064812 AAAAATTATA
*
29064822 AAAAAATAAAATAAAAAT
1 AAAAAATAAAATAAAAAC
29064840 AAAAAAT-AAATAAAAAC
1 AAAAAATAAAATAAAAAC
29064857 AATAAAAT
1 AA-AAAAT
29064865 TTTTATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 11 0.48
18 12 0.52
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.16
Consensus pattern (18 bp):
AAAAAATAAAATAAAAAC
Found at i:29064910 original size:47 final size:48
Alignment explanation
Indices: 29064850--29064948 Score: 112
Period size: 47 Copynumber: 2.1 Consensus size: 48
29064840 AAAAAATAAA
* * *
29064850 TAAAAACAATAAAATT-TTTATTTTTACCTAATTTTTAGAAATACTACT
1 TAAAAACAATAAAATTGATGA-TTTTACCTAATTTTTAGAAATACTACC
* * * *
29064898 TAAAAA-ACTAAAATTGATGATTTTATCTAATTTTTATAAATATTACC
1 TAAAAACAATAAAATTGATGATTTTACCTAATTTTTAGAAATACTACC
29064945 TAAA
1 TAAA
29064949 CAAAACTATG
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
47 35 0.81
48 8 0.19
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.42
Consensus pattern (48 bp):
TAAAAACAATAAAATTGATGATTTTACCTAATTTTTAGAAATACTACC
Found at i:29065341 original size:18 final size:18
Alignment explanation
Indices: 29065318--29065362 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
29065308 AGTTTTTGGC
29065318 TGCGAATTTAATGGGTTT
1 TGCGAATTTAATGGGTTT
*
29065336 TGCGAATTTGATGGGTTT
1 TGCGAATTTAATGGGTTT
29065354 TGCGAATTT
1 TGCGAATTT
29065363 TAAATATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.20, C:0.07, G:0.29, T:0.44
Consensus pattern (18 bp):
TGCGAATTTAATGGGTTT
Found at i:29066278 original size:19 final size:19
Alignment explanation
Indices: 29066250--29066287 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
29066240 TACATTTAGA
*
29066250 AAATTTTTTTATAATATAC
1 AAATTATTTTATAATATAC
29066269 AAATTATTTTATAATATAC
1 AAATTATTTTATAATATAC
29066288 TTTTTGACGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (19 bp):
AAATTATTTTATAATATAC
Found at i:29066371 original size:28 final size:24
Alignment explanation
Indices: 29066333--29066387 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 24
29066323 AATAATTTAA
29066333 TTTTTATTATAACTTCATTCAAATTT
1 TTTTTATTATAACTTCA-T-AAATTT
*
29066359 TTTTTATAATATAATTTCATAAATTT
1 TTTTTAT--TATAACTTCATAAATTT
29066385 TTT
1 TTT
29066388 ACCATAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 16 0.62
27 1 0.04
28 9 0.35
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (24 bp):
TTTTTATTATAACTTCATAAATTT
Found at i:29066569 original size:16 final size:16
Alignment explanation
Indices: 29066548--29066579 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
29066538 TTGACTAATT
29066548 GAATCAGTTAGACCGG
1 GAATCAGTTAGACCGG
29066564 GAATCAGTTAGACCGG
1 GAATCAGTTAGACCGG
29066580 TTGAATTGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.19, G:0.31, T:0.19
Consensus pattern (16 bp):
GAATCAGTTAGACCGG
Found at i:29076887 original size:16 final size:17
Alignment explanation
Indices: 29076866--29076897 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
29076856 TTATTGAACA
29076866 AAAATCA-CAAAAATGT
1 AAAATCATCAAAAATGT
29076882 AAAATCATCAAAAATG
1 AAAATCATCAAAAATG
29076898 ATTCAAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (17 bp):
AAAATCATCAAAAATGT
Found at i:29086784 original size:43 final size:43
Alignment explanation
Indices: 29086730--29086997 Score: 331
Period size: 43 Copynumber: 6.3 Consensus size: 43
29086720 TTTTCGAAAT
*
29086730 AAACGGCGCTATAGACCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* *
29086773 AAACGCCGCTATAAACCACGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* *
29086816 AAACGCCGTTATAGACCATGACCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * *
29086859 AAACGCCGCTATAGAGCACGACCTTTAGCGGTGCTTTTCCCAC
1 AAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * * **
29086902 AAACGCCGCTATAGATCATGACCTTTAACAGCGCTTTTATCAC
1 AAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * ** * * * * *
29086945 AAATGCCGCTAAAGAAGA-AACCTTTAGCGACGCTTCTCGCAA
1 AAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCCCAC
29086987 AAACGCCGCTA
1 AAACGCCGCTA
29086998 AAAAGATAAC
Statistics
Matches: 193, Mismatches: 32, Indels: 1
0.85 0.14 0.00
Matches are distributed among these distances:
42 26 0.13
43 167 0.87
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:29090120 original size:2 final size:2
Alignment explanation
Indices: 29090113--29090140 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
29090103 AGCGGCATTC
29090113 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
29090141 GTGATACTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:29090418 original size:19 final size:20
Alignment explanation
Indices: 29090376--29090420 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
29090366 GGTTTCAAAG
29090376 GGGGGAAATTAGGGATTTTA
1 GGGGGAAATTAGGGATTTTA
29090396 GGGGGAAAGTT-GGGATTTT-
1 GGGGGAAA-TTAGGGATTTTA
29090415 GGGGGA
1 GGGGGA
29090421 GGGGATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.25
20 16 0.67
21 2 0.08
ACGTcount: A:0.24, C:0.00, G:0.49, T:0.27
Consensus pattern (20 bp):
GGGGGAAATTAGGGATTTTA
Found at i:29092018 original size:98 final size:98
Alignment explanation
Indices: 29091878--29092074 Score: 313
Period size: 98 Copynumber: 2.0 Consensus size: 98
29091868 TTTTTTATCA
* * * *
29091878 TAAAGGAAATATTCCGAATTTGGGATTTTAAAAGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAATTTAGAATTCTAAAAGAATCGTGCCCTAACGTATTGGGTGTGATTTC
* *
29091943 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGCGGATATTCTTTTAAAG
* * *
29091976 TAAAGGAAATATTCCGAGTTTAGAATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAATTTAGAATTCTAAAAGAATCGTGCCCTAACGTATTGGGTGTGATTTC
29092041 TTAAATCTTGGATAAGCGGATATTCTTTTAAAG
66 TTAAATCTTGGATAAGCGGATATTCTTTTAAAG
29092074 T
1 T
29092075 TTTATTGTAC
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAATTTAGAATTCTAAAAGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGCGGATATTCTTTTAAAG
Found at i:29092262 original size:27 final size:27
Alignment explanation
Indices: 29092229--29092282 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
29092219 TTTTCCAAAT
29092229 TCTCGACCTTAAGACATTAATTAATTA
1 TCTCGACCTTAAGACATTAATTAATTA
29092256 TCTCGACCTTAAGACATTAATTAATTA
1 TCTCGACCTTAAGACATTAATTAATTA
29092283 ACTAGGTACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.19, G:0.07, T:0.37
Consensus pattern (27 bp):
TCTCGACCTTAAGACATTAATTAATTA
Found at i:29096532 original size:637 final size:631
Alignment explanation
Indices: 29095421--29096635 Score: 1891
Period size: 637 Copynumber: 1.9 Consensus size: 631
29095411 TGTCTCTATA
** *
29095421 TTCCTTTCCTTAGCATACATCGAACACGAATTTCACTAGGAACTACTGGAAACCACATAGAAATT
1 TTCCTTTCCTTAGCATACATCGAACAAAAATTTCACTAGGAACTACTGGAAACCACATAAAAATT
29095486 GATTTGTTTAAATTTTCTCAACAACAAAACATGTAAGTTCAGTGTTAAGGACTTTATTAGAAAGG
66 GATTTGTTTAAATTTTCTCAACAACAAAACATGTAAGTTCAGTGTTAAGGACTTTATTAGAAAGG
*
29095551 CATAAACTAAACAACAAAAAAAATGTAATCTTGAAAAAAAAAAAAACAACAACAACAATAACAAT
131 CATAAACCAAACAACAAAAAAAATGTAATCTTG--AAAAAAAAAAACAACAACAACAATAACAAT
* * *
29095616 CAATAATTTTTGAAACTGAAACTAAAAAAAAATAAGAAAAAACAAAGGAAAAAAGGAATGAAAAA
194 CAATAATTTTCGAAACTAAAACTAAAAAAAAATAAGAAAAAACAAAGGAAAAAAGGAACGAAAAA
29095681 TATTTAAAAAGAAGAGAAACTAACATTGATAAAATGTAGAAGAAAAACAACTTGATAAGGTGAGT
259 TATTTAAAAAGAAGAGAAACTAACATTGATAAAATGTAGAAGAAAAACAACTTGATAAGGTGAGT
*
29095746 GTGTCGAGATTGCAAAATTGCAAAGAAAGAAGACAGAATGCATGTATGGTTAGGGAATACTCAAG
324 GTGTCGAGATTGCAAAAATGCAAAGAAAGAAGACAGAATGCATGTATGGTTAGGGAATACTCAAG
* *
29095811 TTTTGATGAAATGATGTGTTCACTGGAAAATATATTTAATCAGTGAACAAGTGGAAATTTTAGTT
389 TTTTGACGAAATGATGTGTTCACTGGAAAATATACTTAATCAGTGAACAAGTGGAAATTTTAGTT
* * * *
29095876 GGTAATTGAAAACAATGTTATAGAATATAAATCAATGAGTCATTATTAGAAGCTTTGTGGTAAAA
454 GGTAATCGAAAACAATGTTATAGAATATAAATCAACGAGTCATTATAAGAAGCTTTGTAGTAAAA
*
29095941 ATTAACTTCAGT-CTGGTTATAATCATTACCCAGAACATACCATTATGTGGCAAAGGAAATTTTT
519 ACTAACTTCAGTCCT-GTTATAATCATTACCCAGAACATACCATTATGTGGCAAAGGAAATTTTT
29096005 GTTCGATGTATTGCCCTTCTAATAAAGATAAACTTATAATGTTCCATTC
583 GTTCGATGTATTGCCCTTCTAATAAAGATAAACTTATAATGTTCCATTC
*
29096054 TTCCTTTCCTTAGGATACATCGAACAAAAATTTCACTAGGAACTACTGG-AACCTACATAAAAAT
1 TTCCTTTCCTTAGCATACATCGAACAAAAATTTCACTAGGAACTACTGGAAACC-ACATAAAAAT
* * * *
29096118 TGATTTGTTTAAATTTTCTCAGCAACTAAACATGTAAGTTTAGTGTTAAGGACTTTATTAGAAGG
65 TGATTTGTTTAAATTTTCTCAACAACAAAACATGTAAGTTCAGTGTTAAGGACTTTATTAGAAAG
* * *
29096183 GCATAAACCAAACAACAACAAAAAATGTAATCTTG-AAAACAACAACAACAACAATAATAACAAT
130 GCATAAACCAAACAACAA-AAAAAATGTAATCTTGAAAAAAAAAAACAACAACAACAATAACAAT
* * * *
29096247 CACTGATTTTCGAAACTAAAACTAAAAAACCAAATAAGAAAAAAAACAAAGGAAGAATGGAACGA
194 CAATAATTTTCGAAACTAAAACTAAAAAA--AAATAAG--AAAAAACAAAGGAAAAAAGGAACGA
* *
29096312 AAAA-ATTTAAAATAG-AGAGAAAGTAACCTTGATAAAATGTAGAAGAAAAACAACAACTTGATA
255 AAAATATTTAAAA-AGAAGAGAAACTAACATTGATAAAATGTAGAAG--AAA-AACAACTTGATA
* * * *
29096375 AGGTGTGTGTGTCGGGATTGGAAAAATGCAAAGAAAGAAGACAGGATGCATGTATGGTTAGGGAA
316 AGGTGAGTGTGTCGAGATTGCAAAAATGCAAAGAAAGAAGACAGAATGCATGTATGGTTAGGGAA
* * *
29096440 TACTCAAGTTTTGACGAAATGATGTGTTGACTTGAAAATATACTTAATCAGTGAACAGGTGGAAA
381 TACTCAAGTTTTGACGAAATGATGTGTTCACTGGAAAATATACTTAATCAGTGAACAAGTGGAAA
* * * *
29096505 TTTTAGTTGGTAATCGAACATAATGTTATAGAATATAAATTAGCGAGTCATTATAAGAAGCTTTG
446 TTTTAGTTGGTAATCGAAAACAATGTTATAGAATATAAATCAACGAGTCATTATAAGAAGCTTTG
* * *
29096570 TAGTAGAAACTAACTTCGGTCCTGTTATAATCATTACCCAGAACATACCATTATGTGGTAAAGGA
511 TAGTAAAAACTAACTTCAGTCCTGTTATAATCATTACCCAGAACATACCATTATGTGGCAAAGGA
29096635 A
576 A
29096636 TATCAAATAA
Statistics
Matches: 528, Mismatches: 43, Indels: 18
0.90 0.07 0.03
Matches are distributed among these distances:
631 51 0.10
632 4 0.01
633 140 0.27
634 52 0.10
635 28 0.05
636 3 0.01
637 248 0.47
638 2 0.00
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.27
Consensus pattern (631 bp):
TTCCTTTCCTTAGCATACATCGAACAAAAATTTCACTAGGAACTACTGGAAACCACATAAAAATT
GATTTGTTTAAATTTTCTCAACAACAAAACATGTAAGTTCAGTGTTAAGGACTTTATTAGAAAGG
CATAAACCAAACAACAAAAAAAATGTAATCTTGAAAAAAAAAAACAACAACAACAATAACAATCA
ATAATTTTCGAAACTAAAACTAAAAAAAAATAAGAAAAAACAAAGGAAAAAAGGAACGAAAAATA
TTTAAAAAGAAGAGAAACTAACATTGATAAAATGTAGAAGAAAAACAACTTGATAAGGTGAGTGT
GTCGAGATTGCAAAAATGCAAAGAAAGAAGACAGAATGCATGTATGGTTAGGGAATACTCAAGTT
TTGACGAAATGATGTGTTCACTGGAAAATATACTTAATCAGTGAACAAGTGGAAATTTTAGTTGG
TAATCGAAAACAATGTTATAGAATATAAATCAACGAGTCATTATAAGAAGCTTTGTAGTAAAAAC
TAACTTCAGTCCTGTTATAATCATTACCCAGAACATACCATTATGTGGCAAAGGAAATTTTTGTT
CGATGTATTGCCCTTCTAATAAAGATAAACTTATAATGTTCCATTC
Found at i:29098698 original size:94 final size:94
Alignment explanation
Indices: 29098594--29098816 Score: 324
Period size: 94 Copynumber: 2.4 Consensus size: 94
29098584 ACCCAAGTAT
* * *
29098594 GTATGTATTGATAACTTGTTGAGACCAAATGTTGAGCAATTAT-AACTTATATTCTACGAGTTGA
1 GTATGTATTGATAAATTGTTGAGACCAAATGTTGAGCAATTATGAA-TTATATCCTAAGAGTTGA
*
29098658 AGGAAGAATA-CTGTAAATACTGAGGAATAA
65 AGGAAGAATATC-ATAAATACTGAGGAATAA
* * *
29098688 GTATGTATTGATAAAATGTTGAGACCAAATGTTGAGCAATTATGGATTATATCCTAAGAGTTGAG
1 GTATGTATTGATAAATTGTTGAGACCAAATGTTGAGCAATTATGAATTATATCCTAAGAGTTGAA
* * *
29098753 GGAAGAATATCATAATTATTGAGGAGTAA
66 GGAAGAATATCATAAATACTGAGGAATAA
29098782 GTATGTATTGATAAATTGTTGAGACCAAATGTTGA
1 GTATGTATTGATAAATTGTTGAGACCAAATGTTGA
29098817 TATTTTAATT
Statistics
Matches: 116, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
94 114 0.98
95 2 0.02
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.33
Consensus pattern (94 bp):
GTATGTATTGATAAATTGTTGAGACCAAATGTTGAGCAATTATGAATTATATCCTAAGAGTTGAA
GGAAGAATATCATAAATACTGAGGAATAA
Done.