Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55868233
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 983842 characters in sequence are not A, C, G, or T
File 99 of 187
Found at i:29364750 original size:17 final size:18
Alignment explanation
Indices: 29364730--29364798 Score: 70
Period size: 19 Copynumber: 3.7 Consensus size: 18
29364720 TATGTTTTAT
29364730 ATTTTTATAATTTAT-TA
1 ATTTTTATAATTTATATA
*
29364747 ATTTTTTTAATTTTATATA
1 ATTTTTATAA-TTTATATA
29364766 AGTTTTTATAATATT-TATA
1 A-TTTTTATAAT-TTATATA
*
29364785 ATATTTTATGATTT
1 AT-TTTTATAATTT
29364799 TTCTTATAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
17 9 0.20
18 8 0.18
19 17 0.39
20 10 0.23
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (18 bp):
ATTTTTATAATTTATATA
Found at i:29364800 original size:9 final size:9
Alignment explanation
Indices: 29364701--29364800 Score: 80
Period size: 9 Copynumber: 10.8 Consensus size: 9
29364691 AGTTTGTATA
*
29364701 AATTTTTAA
1 AATTTTTAT
29364710 ATATTTTTA-
1 A-ATTTTTAT
29364719 ATATGTTTTAT
1 A-AT-TTTTAT
29364730 -ATTTTTAT
1 AATTTTTAT
*
29364738 AATTTAT-T
1 AATTTTTAT
*
29364746 AATTTTTTT
1 AATTTTTAT
29364755 AATTTTATAT
1 AATTTT-TAT
29364765 AAGTTTTTAT
1 AA-TTTTTAT
*
29364775 AATATTTAT
1 AATTTTTAT
29364784 AATATTTTAT
1 AAT-TTTTAT
*
29364794 GATTTTT
1 AATTTTT
29364801 CTTATAAGTT
Statistics
Matches: 77, Mismatches: 6, Indels: 16
0.78 0.06 0.16
Matches are distributed among these distances:
8 13 0.17
9 32 0.42
10 28 0.36
11 4 0.05
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (9 bp):
AATTTTTAT
Found at i:29364836 original size:22 final size:23
Alignment explanation
Indices: 29364791--29364837 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
29364781 TATAATATTT
***
29364791 TATGATTTTTCTTATAAGTTTTA
1 TATGATTTTTCTTATAAAAATTA
29364814 TATG-TTTTTCTTATAAAAATTA
1 TATGATTTTTCTTATAAAAATTA
29364836 TA
1 TA
29364838 AGTGTATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.32, C:0.04, G:0.06, T:0.57
Consensus pattern (23 bp):
TATGATTTTTCTTATAAAAATTA
Found at i:29368733 original size:71 final size:71
Alignment explanation
Indices: 29368620--29368760 Score: 203
Period size: 71 Copynumber: 2.0 Consensus size: 71
29368610 CTTTTCAAAT
* * * *
29368620 TCAAGTTTTAAACAATCTTAGGAATTAAAAAGAGATCGTGTCCTAACTTACTGGGCATGATCCCT
1 TCAAGGTTTAAACAATCTCAGGAATCAAAAAGAGATCATGTCCTAACTTACTGGGCATGATCCCT
29368685 TTTTTC
66 TTTTTC
* * *
29368691 TCAAGGTTTAAACGATCTCGGGAATCAAGAAA-AGATCATGTCCTAACTTACTGGGCATGATTCC
1 TCAAGGTTTAAACAATCTCAGGAATCAA-AAAGAGATCATGTCCTAACTTACTGGGCATGATCCC
29368755 TTTTTT
65 TTTTTT
29368761 AAATCCGAGA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
71 59 0.95
72 3 0.05
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34
Consensus pattern (71 bp):
TCAAGGTTTAAACAATCTCAGGAATCAAAAAGAGATCATGTCCTAACTTACTGGGCATGATCCCT
TTTTTC
Found at i:29369101 original size:22 final size:22
Alignment explanation
Indices: 29369074--29369118 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
29369064 TCGTGGACCA
*
29369074 AAATCGTTGTTTTAATAA-AATC
1 AAATCGTT-TATTAATAACAATC
29369096 AAATCGTTTATTAATAACAATC
1 AAATCGTTTATTAATAACAATC
29369118 A
1 A
29369119 CTTTTTGACG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.38
Consensus pattern (22 bp):
AAATCGTTTATTAATAACAATC
Found at i:29375294 original size:23 final size:23
Alignment explanation
Indices: 29375268--29375355 Score: 67
Period size: 22 Copynumber: 4.0 Consensus size: 23
29375258 AGTGCGCACC
*
29375268 CGTAGGAGAGCCCTTGAGTGGGA
1 CGTAGAAGAGCCCTTGAGTGGGA
* * *
29375291 CGTATAAGAACCCTTTA-TGGGA
1 CGTAGAAGAGCCCTTGAGTGGGA
* * *
29375313 CGTTGGAGAGCCCTCG-G-GGGA
1 CGTAGAAGAGCCCTTGAGTGGGA
* *
29375334 CATATAAGAGCCCTT-AGTGGGA
1 CGTAGAAGAGCCCTTGAGTGGGA
29375356 TGAATAGAAG
Statistics
Matches: 47, Mismatches: 15, Indels: 7
0.68 0.22 0.10
Matches are distributed among these distances:
21 15 0.32
22 19 0.40
23 13 0.28
ACGTcount: A:0.25, C:0.19, G:0.35, T:0.20
Consensus pattern (23 bp):
CGTAGAAGAGCCCTTGAGTGGGA
Found at i:29375685 original size:26 final size:26
Alignment explanation
Indices: 29375396--29375686 Score: 123
Period size: 26 Copynumber: 11.3 Consensus size: 26
29375386 GTAAATGTGA
* *
29375396 AAGTCCATCAGGACAATCTAATTGGG
1 AAGTCTATTAGGACAATCTAATTGGG
** * *
29375422 AAGTCCGTTAGGACAATTTGA-TGTGG
1 AAGTCTATTAGGACAATCTAATTG-GG
* * *
29375448 AAGCCCATTAGGACAATCTAATTAGG
1 AAGTCTATTAGGACAATCTAATTGGG
**
29375474 AAGTCTGCTAGGACAATCTAA-TGTGG
1 AAGTCTATTAGGACAATCTAATTG-GG
** *
29375500 AA-TCT-TGTCAATACAATCCAATTGGG
1 AAGTCTAT-T-AGGACAATCTAATTGGG
* * * ** *
29375526 AAGTGTACTAAGATTATATAATAT-GG
1 AAGTCTATTAGGACAATCTAAT-TGGG
* * **
29375552 -AGTCTATCAGTACAATCTAA-AAGG
1 AAGTCTATTAGGACAATCTAATTGGG
*** * *
29375576 AAGTCCGCTAGGATAATCTAA-TGAAG
1 AAGTCTATTAGGACAATCTAATTG-GG
** * * *
29375602 AAGTCCGTCAGGACAATCTATTTAGG
1 AAGTCTATTAGGACAATCTAATTGGG
** *
29375628 AAGTCTGCTAGGACGATCTAA-TGTGG
1 AAGTCTATTAGGACAATCTAATTG-GG
29375654 AAGTCTATTAGGACAATCTAATTGGG
1 AAGTCTATTAGGACAATCTAATTGGG
29375680 AAGTCTA
1 AAGTCTA
29375687 CAAGGGTGAT
Statistics
Matches: 192, Mismatches: 58, Indels: 30
0.69 0.21 0.11
Matches are distributed among these distances:
24 2 0.01
25 34 0.18
26 146 0.76
27 10 0.05
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (26 bp):
AAGTCTATTAGGACAATCTAATTGGG
Found at i:29375685 original size:52 final size:52
Alignment explanation
Indices: 29375389--29375685 Score: 258
Period size: 52 Copynumber: 5.8 Consensus size: 52
29375379 CATTATCGTA
* * * * *
29375389 AATGTGAAAGTCCATCAGGACAATCTAATTGGGAAGTCCGTTAGGACAATTT
1 AATGTGGAAGTCCATCAGGACAATCTAATTAGGAAGTCTGCTAGGACAATCT
* * *
29375441 GATGTGGAAGCCCATTAGGACAATCTAATTAGGAAGTCTGCTAGGACAATCT
1 AATGTGGAAGTCCATCAGGACAATCTAATTAGGAAGTCTGCTAGGACAATCT
** ** * * * * * ** *
29375493 AATGTGGAA-TCTTGTCAATACAATCCAATTGGGAAGTGTACTAAGATTATAT
1 AATGTGGAAGTC-CATCAGGACAATCTAATTAGGAAGTCTGCTAGGACAATCT
* * * * * *
29375545 AATATGG-AGTCTATCAGTACAATCTAA-AAGGAAGTCCGCTAGGATAATCT
1 AATGTGGAAGTCCATCAGGACAATCTAATTAGGAAGTCTGCTAGGACAATCT
** * * *
29375595 AATGAAGAAGTCCGTCAGGACAATCTATTTAGGAAGTCTGCTAGGACGATCT
1 AATGTGGAAGTCCATCAGGACAATCTAATTAGGAAGTCTGCTAGGACAATCT
* * *
29375647 AATGTGGAAGTCTATTAGGACAATCTAATTGGGAAGTCT
1 AATGTGGAAGTCCATCAGGACAATCTAATTAGGAAGTCT
29375686 ACAAGGGTGA
Statistics
Matches: 188, Mismatches: 53, Indels: 8
0.76 0.21 0.03
Matches are distributed among these distances:
50 19 0.10
51 31 0.16
52 138 0.73
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.28
Consensus pattern (52 bp):
AATGTGGAAGTCCATCAGGACAATCTAATTAGGAAGTCTGCTAGGACAATCT
Found at i:29375707 original size:26 final size:25
Alignment explanation
Indices: 29375611--29375707 Score: 77
Period size: 26 Copynumber: 3.7 Consensus size: 25
29375601 GAAGTCCGTC
* * * *
29375611 AGGACAATCTATTTAGGAAGTCTGCT
1 AGGACGATCTAATT-GGAAGTCTACA
**
29375637 AGGACGATCTAATGTGGAAGTCTATT
1 AGGACGATCTAAT-TGGAAGTCTACA
*
29375663 AGGACAATCTAATTGGGAAGTCTACA
1 AGGACGATCTAATT-GGAAGTCTACA
**
29375689 AGGGTGATCTAATATGGAA
1 AGGACGATCTAAT-TGGAA
29375708 TTTCGTCAGT
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
25 1 0.02
26 55 0.95
27 2 0.03
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (25 bp):
AGGACGATCTAATTGGAAGTCTACA
Found at i:29378855 original size:31 final size:30
Alignment explanation
Indices: 29378809--29378868 Score: 93
Period size: 31 Copynumber: 2.0 Consensus size: 30
29378799 GAAAAACTGG
29378809 AATGAAAGAAGGGAGAAGCAAACGAGAGAT
1 AATGAAAGAAGGGAGAAGCAAACGAGAGAT
* *
29378839 AATGTAAAGAATGGAGAAGCAAATGAGAGA
1 AATG-AAAGAAGGGAGAAGCAAACGAGAGA
29378869 ATAAGTATCC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 4 0.15
31 23 0.85
ACGTcount: A:0.53, C:0.05, G:0.32, T:0.10
Consensus pattern (30 bp):
AATGAAAGAAGGGAGAAGCAAACGAGAGAT
Found at i:29381690 original size:19 final size:19
Alignment explanation
Indices: 29381666--29381705 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
29381656 TCCCATATTG
29381666 TTTTTT-TCTTTCTTCTCTC
1 TTTTTTCTCTTTCTTC-CTC
*
29381685 TTTTTTCTTTTTCTTCCTC
1 TTTTTTCTCTTTCTTCCTC
29381704 TT
1 TT
29381706 CCTTTCATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTTTCTCTTTCTTCCTC
Found at i:29381711 original size:20 final size:20
Alignment explanation
Indices: 29381674--29381711 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
29381664 TGTTTTTTTC
*
29381674 TTTCTTCTCTCTTTTTTCTT
1 TTTCTTCTCTCTTCTTTCTT
29381694 TTTCTTC-CTCTTCCTTTC
1 TTTCTTCTCTCTT-CTTTC
29381712 ATTTGGTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTCTTCTCTCTTCTTTCTT
Found at i:29382146 original size:30 final size:30
Alignment explanation
Indices: 29382110--29382206 Score: 158
Period size: 30 Copynumber: 3.2 Consensus size: 30
29382100 TAAGCTAGGT
*
29382110 TGGGCGTGTGAACCACACGGACATGCCACA
1 TGGGCGTGTGGACCACACGGACATGCCACA
*
29382140 TGGGCGTATGGACCACACGGACATGCCACA
1 TGGGCGTGTGGACCACACGGACATGCCACA
*
29382170 TGGGCATGTGGACCACACGGACATGCCACA
1 TGGGCGTGTGGACCACACGGACATGCCACA
*
29382200 TAGGCGT
1 TGGGCGT
29382207 ATGGGTTTTG
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.26, C:0.29, G:0.31, T:0.14
Consensus pattern (30 bp):
TGGGCGTGTGGACCACACGGACATGCCACA
Found at i:29391728 original size:13 final size:13
Alignment explanation
Indices: 29391710--29391734 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29391700 GACAACCAAC
29391710 CTGCTATTACAAT
1 CTGCTATTACAAT
29391723 CTGCTATTACAA
1 CTGCTATTACAA
29391735 GGTAAGACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (13 bp):
CTGCTATTACAAT
Found at i:29393724 original size:46 final size:47
Alignment explanation
Indices: 29393625--29393735 Score: 117
Period size: 46 Copynumber: 2.4 Consensus size: 47
29393615 TATAAATGAG
*
29393625 TATATAAATATATATATATATGTATATTAAGATTATAAAATGAATAA
1 TATATAAATATATATATATAGGTATATTAAGATTATAAAATGAATAA
* *
29393672 TA-ATAAATATATATATATACAGGTATA-TATG-TATATAAACT-AA-AA
1 TATATAAATATATATATAT--AGGTATATTAAGAT-TATAAAATGAATAA
29393717 TATATAAAGTA-ATATATAT
1 TATATAAA-TATATATATAT
29393736 GTATATGAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 11
0.80 0.04 0.16
Matches are distributed among these distances:
45 4 0.07
46 32 0.57
47 14 0.25
48 6 0.11
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (47 bp):
TATATAAATATATATATATAGGTATATTAAGATTATAAAATGAATAA
Found at i:29394000 original size:3 final size:3
Alignment explanation
Indices: 29393992--29394046 Score: 92
Period size: 3 Copynumber: 18.3 Consensus size: 3
29393982 AGATAAGTAG
*
29393992 ATA ATA ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
29394040 AAA ATA A
1 ATA ATA A
29394047 ATTGCCAAGA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:29394991 original size:8 final size:8
Alignment explanation
Indices: 29394978--29395016 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
29394968 TCTACTGCCT
29394978 TTTCTTTG
1 TTTCTTTG
29394986 TTTCTTTG
1 TTTCTTTG
*
29394994 TTTCTTTC
1 TTTCTTTG
29395002 TTTCCTTTG
1 TTT-CTTTG
29395011 TTTCTT
1 TTTCTT
29395017 CTTTGCAGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.00, C:0.18, G:0.08, T:0.74
Consensus pattern (8 bp):
TTTCTTTG
Found at i:29395079 original size:20 final size:20
Alignment explanation
Indices: 29395050--29395091 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
29395040 GGGGGGCCGA
29395050 CATGACGTTGGCGGCAGCGG
1 CATGACGTTGGCGGCAGCGG
* *
29395070 CATGATGTTGGCGGCAGTGG
1 CATGACGTTGGCGGCAGCGG
29395090 CA
1 CA
29395092 GAGGGCCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.17, C:0.21, G:0.43, T:0.19
Consensus pattern (20 bp):
CATGACGTTGGCGGCAGCGG
Found at i:29395935 original size:46 final size:46
Alignment explanation
Indices: 29395858--29396613 Score: 1084
Period size: 46 Copynumber: 16.5 Consensus size: 46
29395848 TCGCCGTCAG
* ** **
29395858 TACAGGAAGGCAAGATCTGC-AACTTCGATCTACTCCATTGCCAAA
1 TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCAAA
* * *
29395903 TACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGTCTAA
1 TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCAAA
* * *
29395949 TACAGGAAGACAAGATCTACTTTTTTCGATCTACTCCGCTGTCAAA
1 TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCAAA
*
29395995 TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCTAA
1 TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCAAA
* * * *
29396041 TACAGGAAGACAATATCTACTTTCTTCAATCTACTCCGCTGCCTAA
1 TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCAAA
* * * *
29396087 TACAGGAAAACAAGATCTACTTTTTTCGATCTACTCCGCTGCCTAA
1 TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCAAA
*
29396133 TACAGGAAGACAAGATCTGCTATCTTCGATCTACTCCGCTGCCAAA
1 TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCAAA
* * *
29396179 TACAAGAAGACAAGATCTGCTATCTTCGATCTACTCCGTTGCCAAA
1 TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCAAA
* * *
29396225 TACAGGAGGACAAGATCTACTATT-TTCGATCTACTCCGCTGCCTAA
1 TACAGGAAGACAAGATCTGCT-TTCTTCGATCTACTCCGCTGCCAAA
*
29396271 TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCTAA
1 TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCAAA
* * *
29396317 TACAGGAAGACAAGATATGCTTTTTTCGATCTACTCTGCTGCCAAA
1 TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCAAA
* * *
29396363 TACAGGAAGACAAGATCTGCTATCTTCGATCTACTCCACTGCTAAA
1 TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCAAA
*
29396409 TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCTAA
1 TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCAAA
* * * *
29396455 TACAGGAAGACAAGATCTGCTTTCTTTGATCTACTTCGCTGTCTAA
1 TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCAAA
* * *
29396501 TACAGGAAGACAAGATTTGCTATCTTCGATCTACTTCGCTGCCAAA
1 TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCAAA
* *
29396547 TACAGGAAGACAAGATCTACTATCTTCGATCTACTCCGCTGCCAAA
1 TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCAAA
*
29396593 TACAGGAAGATAAGATCTGCT
1 TACAGGAAGACAAGATCTGCT
29396614 GCTTCTAGTC
Statistics
Matches: 643, Mismatches: 65, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
45 20 0.03
46 622 0.97
47 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (46 bp):
TACAGGAAGACAAGATCTGCTTTCTTCGATCTACTCCGCTGCCAAA
Found at i:29396859 original size:15 final size:16
Alignment explanation
Indices: 29396824--29396859 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
29396814 AGGTGTGTAG
29396824 GAATGATATTTGCATT
1 GAATGATATTTGCATT
29396840 GAATGATATTTGCA-T
1 GAATGATATTTGCATT
29396855 GAATG
1 GAATG
29396860 CAGAATGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.39
Consensus pattern (16 bp):
GAATGATATTTGCATT
Found at i:29397661 original size:97 final size:99
Alignment explanation
Indices: 29397533--29397731 Score: 260
Period size: 97 Copynumber: 2.0 Consensus size: 99
29397523 GCTTGAAAAT
* * * *
29397533 GATTATCAAAATGGACAAGATGAAATTTTATTAAGAACA-AGGCTTAAAATGACTAAATTAATCA
1 GATTATCAAAATGGACAAGATGAAAATTTATTAAGAACACA-GCTCAAAATGAATAAATTAAACA
29397597 AAATAGCAAATTTTGCTAAGATAAG-A-TGAATAA
65 AAATAGCAAATTTTGCTAAGATAAGAACTGAATAA
* * * * * *
29397630 GATTATCACAGTGGATAAGATGAAAATTTATTGAGAGCACAGCTCAAAATGAATAAATTAAACGA
1 GATTATCAAAATGGACAAGATGAAAATTTATTAAGAACACAGCTCAAAATGAATAAATTAAACAA
* *
29397695 GATAGCAAATTTTGCTAAGATACGAACTGAATAA
66 AATAGCAAATTTTGCTAAGATAAGAACTGAATAA
29397729 GAT
1 GAT
29397732 GAAAACAGGT
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
97 75 0.86
98 2 0.02
99 10 0.11
ACGTcount: A:0.47, C:0.10, G:0.17, T:0.27
Consensus pattern (99 bp):
GATTATCAAAATGGACAAGATGAAAATTTATTAAGAACACAGCTCAAAATGAATAAATTAAACAA
AATAGCAAATTTTGCTAAGATAAGAACTGAATAA
Found at i:29398021 original size:17 final size:15
Alignment explanation
Indices: 29397999--29398066 Score: 73
Period size: 17 Copynumber: 4.1 Consensus size: 15
29397989 TGGCCTCTCC
29397999 TTTTTCATTTTCTTTTT
1 TTTTTC-TTTT-TTTTT
29398016 TTTTTCTTTTTTTCTT
1 TTTTTCTTTTTTT-TT
29398032 TTCTTTCTTTTTCTTTT
1 TT-TTTCTTTTT-TTTT
*
29398049 TCTTCTCTTTTTTTTT
1 T-TTTTCTTTTTTTTT
29398065 TT
1 TT
29398067 GAAAATTCTT
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
15 4 0.09
16 13 0.28
17 26 0.57
18 3 0.07
ACGTcount: A:0.01, C:0.15, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTCTTTTTTTTT
Found at i:29398033 original size:24 final size:24
Alignment explanation
Indices: 29397999--29398066 Score: 86
Period size: 24 Copynumber: 2.8 Consensus size: 24
29397989 TGGCCTCTCC
29397999 TTTTTCATTTTCTTTTTTTTTTCTT
1 TTTTTC-TTTTCTTTTTTTTTTCTT
*
29398024 TTTTTCTTTTC-TTTCTTTTTCTT
1 TTTTTCTTTTCTTTTTTTTTTCTT
*
29398047 TTTCTTCTCTT-TTTTTTTTT
1 TTT-TTCTTTTCTTTTTTTTT
29398067 GAAAATTCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
23 14 0.37
24 18 0.47
25 6 0.16
ACGTcount: A:0.01, C:0.15, G:0.00, T:0.84
Consensus pattern (24 bp):
TTTTTCTTTTCTTTTTTTTTTCTT
Found at i:29398044 original size:34 final size:33
Alignment explanation
Indices: 29398001--29398066 Score: 96
Period size: 34 Copynumber: 2.0 Consensus size: 33
29397991 GCCTCTCCTT
* *
29398001 TTTCATTTTCTTTTTTTTTTCTTTTTTTCTTTTC
1 TTTCATTTTCTTTTTCTTCTCTTTTTTT-TTTTC
*
29398035 TTTCTTTTTCTTTTTCTTCTCTTTTTTTTTTT
1 TTTCATTTTCTTTTTCTTCTCTTTTTTTTTTT
29398067 GAAAATTCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 4 0.14
34 25 0.86
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (33 bp):
TTTCATTTTCTTTTTCTTCTCTTTTTTTTTTTC
Found at i:29402688 original size:3 final size:3
Alignment explanation
Indices: 29402680--29402737 Score: 107
Period size: 3 Copynumber: 19.3 Consensus size: 3
29402670 AGATAAGTAG
*
29402680 ATA ATA ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
29402728 ATA ATA ATA A
1 ATA ATA ATA A
29402738 AATTGCCAAG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:29403685 original size:17 final size:16
Alignment explanation
Indices: 29403660--29403696 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
29403650 AATCTACTGC
*
29403660 CTTTTCTTTGTTTCTTT
1 CTTTCCTTTGTTTC-TT
29403677 CTTTCCTTTGTTTCTT
1 CTTTCCTTTGTTTCTT
29403693 CTTT
1 CTTT
29403697 GCAGGTGACG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.00, C:0.22, G:0.05, T:0.73
Consensus pattern (16 bp):
CTTTCCTTTGTTTCTT
Found at i:29405755 original size:8 final size:8
Alignment explanation
Indices: 29405736--29405776 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
29405726 ACTTTACTTT
29405736 ATATAA-A
1 ATATAATA
29405743 ATATAATA
1 ATATAATA
29405751 ATATAATA
1 ATATAATA
29405759 ATATAAT-
1 ATATAATA
*
29405766 ATATAAAA
1 ATATAATA
29405774 ATA
1 ATA
29405777 AAACTTAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
7 12 0.39
8 19 0.61
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (8 bp):
ATATAATA
Found at i:29405777 original size:13 final size:14
Alignment explanation
Indices: 29405735--29405777 Score: 61
Period size: 15 Copynumber: 3.0 Consensus size: 14
29405725 TACTTTACTT
29405735 TATATAAAATATAA
1 TATATAAAATATAA
29405749 TAATATAATAATATAA
1 T-ATATAA-AATATAA
29405765 TATATAAAA-ATAA
1 TATATAAAATATAA
29405778 AACTTAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 4 0.15
14 3 0.11
15 12 0.44
16 8 0.30
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
TATATAAAATATAA
Found at i:29407517 original size:31 final size:31
Alignment explanation
Indices: 29407478--29407549 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
29407468 TCCTCAAATG
*
29407478 CAAG-CAATGTGAACCACTATAGTCTACATA
1 CAAGACAATGTGAACCACTATAGTATACATA
* *
29407508 CAAGACAATGTGAACCATTATAGTATACATG
1 CAAGACAATGTGAACCACTATAGTATACATA
29407539 CAAGACAATGT
1 CAAGACAATGT
29407550 CCTTAAAAGC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
30 4 0.11
31 34 0.89
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.24
Consensus pattern (31 bp):
CAAGACAATGTGAACCACTATAGTATACATA
Found at i:29417092 original size:19 final size:19
Alignment explanation
Indices: 29417051--29417086 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
29417041 TTTTTCCTAT
*
29417051 AAAATGGCTTACTCTTTTC
1 AAAATGACTTACTCTTTTC
29417070 AAAATGACTTAC-CTTTT
1 AAAATGACTTACTCTTTT
29417087 TGAAAAGCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (19 bp):
AAAATGACTTACTCTTTTC
Found at i:29417296 original size:16 final size:17
Alignment explanation
Indices: 29417275--29417333 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 17
29417265 ATATTTAGTC
29417275 ATATAATAAATTA-TTA
1 ATATAATAAATTATTTA
29417291 ATATAATAAATATAATTTA
1 ATATAATAAAT-T-ATTTA
29417310 TTATATTAATAAATTATTTA
1 --ATA-TAATAAATTATTTA
29417330 ATAT
1 ATAT
29417334 TTTAATTTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
16 11 0.30
17 2 0.05
18 4 0.11
19 3 0.08
20 5 0.14
21 4 0.11
22 8 0.22
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATAATAAATTATTTA
Found at i:29417305 original size:22 final size:22
Alignment explanation
Indices: 29417280--29417323 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
29417270 TAGTCATATA
29417280 ATAAATTATTA-ATATAATAAAT
1 ATAAATTATTATAT-TAATAAAT
*
29417302 ATAATTTATTATATTAATAAAT
1 ATAAATTATTATATTAATAAAT
29417324 TATTTAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
ATAAATTATTATATTAATAAAT
Found at i:29417369 original size:16 final size:16
Alignment explanation
Indices: 29417350--29417383 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
29417340 TTTATTTTAT
29417350 TAATAAATTTTAAA-AA
1 TAAT-AATTTTAAATAA
29417366 TAATAATTTTAAATAA
1 TAATAATTTTAAATAA
29417382 TA
1 TA
29417384 TTATTCACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATTTTAAATAA
Found at i:29420542 original size:22 final size:22
Alignment explanation
Indices: 29420517--29420565 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
29420507 AATTGTTTGG
**
29420517 TGACATCACGATGTAGAAGAGA
1 TGACATCACGACATAGAAGAGA
*
29420539 TGACATTACGACATAGAAGAGA
1 TGACATCACGACATAGAAGAGA
29420561 TGACA
1 TGACA
29420566 CTACGACTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.18
Consensus pattern (22 bp):
TGACATCACGACATAGAAGAGA
Found at i:29420570 original size:22 final size:22
Alignment explanation
Indices: 29420530--29420572 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
29420520 CATCACGATG
*
29420530 TAGAAGAGATGACATTACGACA
1 TAGAAGAGATGACACTACGACA
29420552 TAGAAGAGATGACACTACGAC
1 TAGAAGAGATGACACTACGAC
29420573 TTTAGACTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.16, G:0.23, T:0.16
Consensus pattern (22 bp):
TAGAAGAGATGACACTACGACA
Found at i:29420911 original size:12 final size:12
Alignment explanation
Indices: 29420896--29420920 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
29420886 TTAATTCTCA
29420896 AGTCATTTCTAT
1 AGTCATTTCTAT
29420908 AGTCATTTCTAT
1 AGTCATTTCTAT
29420920 A
1 A
29420921 CTCAGTGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.48
Consensus pattern (12 bp):
AGTCATTTCTAT
Found at i:29425919 original size:13 final size:13
Alignment explanation
Indices: 29425903--29425936 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
29425893 ACTAAGTAAT
29425903 AATAATATAA-GAA
1 AATAATA-AATGAA
29425916 AATAATAAATGAA
1 AATAATAAATGAA
29425929 AATAATAA
1 AATAATAA
29425937 TAATAACTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 2 0.10
13 18 0.90
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.24
Consensus pattern (13 bp):
AATAATAAATGAA
Found at i:29425919 original size:16 final size:16
Alignment explanation
Indices: 29425882--29425938 Score: 59
Period size: 16 Copynumber: 3.8 Consensus size: 16
29425872 CATAATCATA
*
29425882 AAAATAATAAGACTAAG
1 AAAATAATAATA-TAAG
*
29425899 -TAATAATAATATAAG
1 AAAATAATAATATAAG
29425914 AAAATAATAA-AT--G
1 AAAATAATAATATAAG
29425927 AAAATAATAATA
1 AAAATAATAATA
29425939 ATAACTAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
13 11 0.31
14 1 0.03
15 6 0.17
16 17 0.49
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.25
Consensus pattern (16 bp):
AAAATAATAATATAAG
Found at i:29426007 original size:3 final size:3
Alignment explanation
Indices: 29426001--29426127 Score: 73
Period size: 3 Copynumber: 41.7 Consensus size: 3
29425991 TAGAACTAAA
* * * * *
29426001 AAT AAT AAC AAT AAA AAT AAT AGT GAT AAT AA- AACT AAG AA- ATAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT A-AT
** * *
29426046 AGG AAT AAT AAA AAT AAT AAT AA- ATAT AAT AAC AAT AAAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT -AAT AAT AAT
* *
29426092 GAA- AAT AAT AAT AAT AAG AAT AAT AAAT AAA AAT AA
1 -AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AA
29426128 ATAAAGTAGA
Statistics
Matches: 93, Mismatches: 21, Indels: 20
0.69 0.16 0.15
Matches are distributed among these distances:
2 6 0.06
3 75 0.81
4 12 0.13
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.24
Consensus pattern (3 bp):
AAT
Found at i:29426017 original size:15 final size:15
Alignment explanation
Indices: 29425997--29426127 Score: 90
Period size: 15 Copynumber: 8.6 Consensus size: 15
29425987 CTACTAGAAC
*
29425997 TAAAAATAATAACAA
1 TAAAAATAATAATAA
29426012 TAAAAATAATAGTGATAA
1 TAAAAATAATA---ATAA
* *
29426030 TAAAACTAAGAA-ATA
1 TAAAAATAATAATA-A
** *
29426045 TAGGAATAATAAAAA
1 TAAAAATAATAATAA
*
29426060 TAATAATAA-ATATAA
1 TAAAAATAATA-ATAA
*
29426075 TAACAATAAATAATAA
1 TAAAAAT-AATAATAA
*
29426091 TGAAAATAATAATAA
1 TAAAAATAATAATAA
*
29426106 TAAGAATAAT-A-AA
1 TAAAAATAATAATAA
29426119 TAAAAATAA
1 TAAAAATAA
29426128 ATAAAGTAGA
Statistics
Matches: 92, Mismatches: 16, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
13 10 0.11
14 3 0.03
15 54 0.59
16 12 0.13
17 1 0.01
18 12 0.13
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.24
Consensus pattern (15 bp):
TAAAAATAATAATAA
Found at i:29429253 original size:13 final size:13
Alignment explanation
Indices: 29429235--29429260 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
29429225 AATCCAGTAA
29429235 GTTAGGGTTCAAT
1 GTTAGGGTTCAAT
29429248 GTTAGGGTTCAAT
1 GTTAGGGTTCAAT
29429261 TTCTCAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.31, T:0.38
Consensus pattern (13 bp):
GTTAGGGTTCAAT
Found at i:29429829 original size:11 final size:11
Alignment explanation
Indices: 29429779--29429831 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
29429769 ATAAAAGCTC
29429779 TAAAATA-AAT
1 TAAAATAGAAT
29429789 TAAATATATGAAT
1 TAAA-ATA-GAAT
*
29429802 TCAAAATAGACT
1 T-AAAATAGAAT
*
29429814 CAAAATAGAAT
1 TAAAATAGAAT
29429825 TAAAATA
1 TAAAATA
29429832 ACCATTGAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
10 4 0.11
11 18 0.51
12 3 0.09
13 7 0.20
14 3 0.09
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.28
Consensus pattern (11 bp):
TAAAATAGAAT
Found at i:29433063 original size:23 final size:24
Alignment explanation
Indices: 29433013--29433065 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
29433003 AAGACAATTT
* *
29433013 AAAATTTAAAAATTTAATTAAAACA
1 AAAATATAAAAA-TTAAATAAAACA
*
29433038 AAAATATAAAAA-TAAATAAAATA
1 AAAATATAAAAATTAAATAAAACA
29433061 AAAAT
1 AAAAT
29433066 GGATAAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 14 0.56
25 11 0.44
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (24 bp):
AAAATATAAAAATTAAATAAAACA
Found at i:29435581 original size:16 final size:17
Alignment explanation
Indices: 29435544--29435583 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
29435534 ATCTTTGTTA
29435544 ATCTATA-GTTTTTATT
1 ATCTATATGTTTTTATT
*
29435560 GT-TATATGTTTTT-TT
1 ATCTATATGTTTTTATT
29435575 ATCTATATG
1 ATCTATATG
29435584 CTAAGAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.23, C:0.05, G:0.10, T:0.62
Consensus pattern (17 bp):
ATCTATATGTTTTTATT
Found at i:29435799 original size:21 final size:23
Alignment explanation
Indices: 29435769--29435810 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
29435759 TTCTCCTTTT
29435769 CCGGCCACCGCAGA-CGGCGGTG
1 CCGGCCACCGCAGATCGGCGGTG
*
29435791 CCGG-CACCGGAGATCGGCGG
1 CCGGCCACCGCAGATCGGCGG
29435811 CCGGCGCGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.14, C:0.38, G:0.43, T:0.05
Consensus pattern (23 bp):
CCGGCCACCGCAGATCGGCGGTG
Found at i:29436399 original size:18 final size:18
Alignment explanation
Indices: 29436376--29436412 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
29436366 ATATAAGTTC
29436376 TATAACCCAAAAATTTAT
1 TATAACCCAAAAATTTAT
29436394 TATAACCCAAAAATTTAT
1 TATAACCCAAAAATTTAT
29436412 T
1 T
29436413 TGTAAACCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (18 bp):
TATAACCCAAAAATTTAT
Found at i:29443078 original size:31 final size:31
Alignment explanation
Indices: 29443042--29443103 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
29443032 GTGCTGAAAG
29443042 AAAAATAAGACAATTTTGGCTTAGGGTATAA
1 AAAAATAAGACAATTTTGGCTTAGGGTATAA
29443073 AAAAATAAGACAATTTTGGCTTAGGGTATAA
1 AAAAATAAGACAATTTTGGCTTAGGGTATAA
29443104 GCCAGACAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.45, C:0.06, G:0.19, T:0.29
Consensus pattern (31 bp):
AAAAATAAGACAATTTTGGCTTAGGGTATAA
Found at i:29448596 original size:84 final size:86
Alignment explanation
Indices: 29448467--29448630 Score: 201
Period size: 84 Copynumber: 1.9 Consensus size: 86
29448457 CCGATAATCC
* * * ** * *
29448467 TATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAATCTTGGATCTTATCTCTCTGAAGTTAC-AG-
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCTAAGATCTTATCTCTCTGAAATCACAAGT
29448530 AGAGCAGATCACATCTAGTCT
66 AGAGCAGATCACATCTAGTCT
*
29448551 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC-AAG-TCTTATCTTTCTGAAATCACAA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AAGCTAAGATCTTATCTCTCTGAAATCACAA
*
29448614 GTAGAGCAGATCGCATC
64 GTAGAGCAGATCACATC
29448631 AACATTTTCA
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
84 47 0.70
85 3 0.04
86 17 0.25
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (86 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCTAAGATCTTATCTCTCTGAAATCACAAGT
AGAGCAGATCACATCTAGTCT
Found at i:29448606 original size:44 final size:42
Alignment explanation
Indices: 29448250--29448599 Score: 185
Period size: 44 Copynumber: 8.1 Consensus size: 42
29448240 CCAATAATCC
* * * **
29448250 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGC-AAG-TCT
* * * * * * *
29448294 TATCTCTCTGAAGTTGCAG-AGAGCAG-TTCACATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCAAGTCT
* *
29448334 TATCTCCCAGAAGTTGCAGTAGAGCAGACTAAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AAGCAAGTCT
* * *
29448378 TATC-CTCCTGAAGTTGTAGTAAGGA--AGACTGAAGATGGCAAATCT
1 TATCTC-CCTGAAGTTGCAGT--GGAGCAGACT-AA-A-AGCAAGTCT
* * * * *
29448423 TATCTCCCTGAGGTTACAGTGGAGCAGA-TTAAAGCCGATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAG-C-A-AGTCT
* * * **
29448467 TATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAATCTTGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGC-AAG-TCT
* * * * * * *
29448511 TATCTCTCTGAAGTTACAG-AGAGCAGA-TCACATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCAAGTCT
29448551 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AAGCAAGTCT
29448595 TATCT
1 TATCT
29448600 TTCTGAAATC
Statistics
Matches: 235, Mismatches: 50, Indels: 42
0.72 0.15 0.13
Matches are distributed among these distances:
40 40 0.17
41 19 0.08
42 16 0.07
43 18 0.08
44 108 0.46
45 31 0.13
46 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (42 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCAAGTCT
Found at i:29454738 original size:25 final size:25
Alignment explanation
Indices: 29454685--29454738 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
29454675 CGACAAAACT
* * *
29454685 AAAATCTAACCTAAAAAGAAAAGAG
1 AAAACCTAAACTAAAAAGAAAAGAA
29454710 AAAACCTAAACTAAAAATGAAAA-AA
1 AAAACCTAAACTAAAAA-GAAAAGAA
29454735 AAAA
1 AAAA
29454739 TTGAAAGGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.70, C:0.11, G:0.07, T:0.11
Consensus pattern (25 bp):
AAAACCTAAACTAAAAAGAAAAGAA
Found at i:29464382 original size:36 final size:36
Alignment explanation
Indices: 29464342--29464412 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
29464332 AGAGTTTGAA
*
29464342 ATAGAGTAAGGATAACTGCTCTGTAAGCACTACCAC
1 ATAGAGTAAGGATAACTGCTATGTAAGCACTACCAC
29464378 ATAGAGTAAGGATAACTGCTATGTAAGCACTACCA
1 ATAGAGTAAGGATAACTGCTATGTAAGCACTACCA
29464413 GTAATTCATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.23
Consensus pattern (36 bp):
ATAGAGTAAGGATAACTGCTATGTAAGCACTACCAC
Found at i:29466007 original size:20 final size:20
Alignment explanation
Indices: 29465970--29466007 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
29465960 TCTAAAATTG
**
29465970 TTTTATTTATAAGTTTATCA
1 TTTTATTTATAAAATTATCA
29465990 TTTTATTTATAAAATTAT
1 TTTTATTTATAAAATTAT
29466008 TACTTTAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61
Consensus pattern (20 bp):
TTTTATTTATAAAATTATCA
Found at i:29466014 original size:20 final size:20
Alignment explanation
Indices: 29465971--29466014 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
29465961 CTAAAATTGT
** *
29465971 TTTATTTATAAGTTTATCAT
1 TTTATTTATAAAATTATCAC
*
29465991 TTTATTTATAAAATTATTAC
1 TTTATTTATAAAATTATCAC
29466011 TTTA
1 TTTA
29466015 ATAAATAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (20 bp):
TTTATTTATAAAATTATCAC
Found at i:29471977 original size:44 final size:45
Alignment explanation
Indices: 29471910--29471994 Score: 145
Period size: 44 Copynumber: 1.9 Consensus size: 45
29471900 TGAACATTAA
*
29471910 ATTTTATTTTTAATGATTTTTAAAGTGCTCATAACATTCTATAAT
1 ATTTTATTTATAATGATTTTTAAAGTGCTCATAACATTCTATAAT
*
29471955 ATTTTATTTAT-ATGATTTTTAAAGTGTTCATAACATTCTA
1 ATTTTATTTATAATGATTTTTAAAGTGCTCATAACATTCTA
29471995 ATTCATAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 28 0.74
45 10 0.26
ACGTcount: A:0.33, C:0.08, G:0.07, T:0.52
Consensus pattern (45 bp):
ATTTTATTTATAATGATTTTTAAAGTGCTCATAACATTCTATAAT
Found at i:29479546 original size:60 final size:60
Alignment explanation
Indices: 29479476--29479601 Score: 252
Period size: 60 Copynumber: 2.1 Consensus size: 60
29479466 CTCTCCCTTC
29479476 CATCTCCCTACTATCCTCAATATCCTTTCTCCCTCTCTTTTTTCCTTCTTCTCCTATAAT
1 CATCTCCCTACTATCCTCAATATCCTTTCTCCCTCTCTTTTTTCCTTCTTCTCCTATAAT
29479536 CATCTCCCTACTATCCTCAATATCCTTTCTCCCTCTCTTTTTTCCTTCTTCTCCTATAAT
1 CATCTCCCTACTATCCTCAATATCCTTTCTCCCTCTCTTTTTTCCTTCTTCTCCTATAAT
29479596 CATCTC
1 CATCTC
29479602 ATTCTCCAAC
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 66 1.00
ACGTcount: A:0.15, C:0.39, G:0.00, T:0.46
Consensus pattern (60 bp):
CATCTCCCTACTATCCTCAATATCCTTTCTCCCTCTCTTTTTTCCTTCTTCTCCTATAAT
Found at i:29483190 original size:5 final size:5
Alignment explanation
Indices: 29483180--29483214 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
29483170 GATAAAATGG
* *
29483180 AGAAA AGAAA AGAAA CGTAA AGAAA AGAAA AGAAA
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA
29483215 CGTACGAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.74, C:0.03, G:0.20, T:0.03
Consensus pattern (5 bp):
AGAAA
Found at i:29483235 original size:25 final size:20
Alignment explanation
Indices: 29483180--29483218 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
29483170 GATAAAATGG
29483180 AGAAAAGAAAAGAAACGTAA
1 AGAAAAGAAAAGAAACGTAA
29483200 AGAAAAGAAAAGAAACGTA
1 AGAAAAGAAAAGAAACGTA
29483219 CGAGAAGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.69, C:0.05, G:0.21, T:0.05
Consensus pattern (20 bp):
AGAAAAGAAAAGAAACGTAA
Found at i:29489302 original size:5 final size:5
Alignment explanation
Indices: 29489294--29489345 Score: 52
Period size: 5 Copynumber: 10.2 Consensus size: 5
29489284 TGAAATTTTC
* * *
29489294 TCGAA TCGAG TCGAG T-GAGA TGGAA TTCGAA TCGAA TCGAA TCGAA TCGAA
1 TCGAA TCGAA TCGAA TCGA-A TCGAA T-CGAA TCGAA TCGAA TCGAA TCGAA
29489345 T
1 T
29489346 ATATTTGTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
4 2 0.05
5 33 0.80
6 6 0.15
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:29489345 original size:26 final size:26
Alignment explanation
Indices: 29489294--29489345 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
29489284 TGAAATTTTC
* * *
29489294 TCGAATCGAGTCGAGTGAGATGGAAT
1 TCGAATCGAATCGAATGAGATCGAAT
29489320 TCGAATCGAATCGAATCGA-ATCGAAT
1 TCGAATCGAATCGAAT-GAGATCGAAT
29489346 ATATTTGTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (26 bp):
TCGAATCGAATCGAATGAGATCGAAT
Found at i:29490035 original size:30 final size:31
Alignment explanation
Indices: 29489996--29490055 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
29489986 AGAGGTGGGA
*
29489996 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
* *
29490027 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
29490056 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:29490956 original size:19 final size:20
Alignment explanation
Indices: 29490932--29490974 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
29490922 GTCTTGCGTC
29490932 TTTCTTTC-TCCTTTTCCTT
1 TTTCTTTCTTCCTTTTCCTT
* *
29490951 TTTCTTTCTTTCTTTTCTTT
1 TTTCTTTCTTCCTTTTCCTT
29490971 TTTC
1 TTTC
29490975 GTTTGGCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTCTTTCTTCCTTTTCCTT
Found at i:29493976 original size:6 final size:6
Alignment explanation
Indices: 29493967--29493993 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
29493957 TTTGTTTCCG
29493967 TTTGGC TTTGGC TTTGGC TTTGGC TTT
1 TTTGGC TTTGGC TTTGGC TTTGGC TTT
29493994 CTTTTCTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.30, T:0.56
Consensus pattern (6 bp):
TTTGGC
Found at i:29494072 original size:23 final size:23
Alignment explanation
Indices: 29494023--29494072 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
29494013 ATTTGTTTTA
*
29494023 TTATTATAATATAATATATATAC
1 TTATTATAATATAATATATAAAC
*
29494046 TTATTATAATAT-ATATATTAAAT
1 TTATTATAATATAATATA-TAAAC
29494069 TTAT
1 TTAT
29494073 AAATATCTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 5 0.21
23 19 0.79
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
TTATTATAATATAATATATAAAC
Found at i:29496726 original size:97 final size:98
Alignment explanation
Indices: 29496581--29496776 Score: 340
Period size: 97 Copynumber: 2.0 Consensus size: 98
29496571 GTGCAATAAA
* * *
29496581 ACTTTAAAAGATCATTCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* *
29496646 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCCAAAATCCCAAACTCGGAATACTTCCTTT
29496679 ACTTTAAAAGAACATCCA-TTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
29496743 CCTCCAAAATCCCAAACTCGGAATACTTCCTTT
66 CCTCCAAAATCCCAAACTCGGAATACTTCCTTT
29496776 A
1 A
29496777 TTATTTTTAG
Statistics
Matches: 93, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
97 77 0.83
98 16 0.17
ACGTcount: A:0.37, C:0.26, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCCAAAATCCCAAACTCGGAATACTTCCTTT
Found at i:29499166 original size:19 final size:19
Alignment explanation
Indices: 29499123--29499192 Score: 61
Period size: 21 Copynumber: 3.5 Consensus size: 19
29499113 GAAGCAATAC
* *
29499123 TAACTTGTTTTAAAATAGTTT
1 TAACTTGATTGAAAATA--TT
29499144 TAACTTGATTGAAAATATT
1 TAACTTGATTGAAAATATT
**
29499163 TAACTCAATTGAAACCAT-TT
1 TAACTTGATTGAAA--ATATT
29499183 TAACTTGATT
1 TAACTTGATT
29499193 TTATCATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
19 14 0.34
20 10 0.24
21 17 0.41
ACGTcount: A:0.37, C:0.10, G:0.09, T:0.44
Consensus pattern (19 bp):
TAACTTGATTGAAAATATT
Found at i:29503864 original size:7 final size:7
Alignment explanation
Indices: 29503853--29503889 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
29503843 GTTTTGCTAT
*
29503853 AAAATTT
1 AAAATTC
29503860 AAAATTC
1 AAAATTC
29503867 AAAATTC
1 AAAATTC
29503874 AAAATTC
1 AAAATTC
29503881 AAAATTC
1 AAAATTC
29503888 AA
1 AA
29503890 TTTTTTTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (7 bp):
AAAATTC
Found at i:29504236 original size:23 final size:23
Alignment explanation
Indices: 29504206--29504252 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
29504196 AGTGGTGATG
29504206 TAACTTAATTTAATGATTTTCTA
1 TAACTTAATTTAATGATTTTCTA
29504229 TAACTTAATTTAATGATTTTCTA
1 TAACTTAATTTAATGATTTTCTA
29504252 T
1 T
29504253 CCATGAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.09, G:0.04, T:0.53
Consensus pattern (23 bp):
TAACTTAATTTAATGATTTTCTA
Found at i:29509070 original size:14 final size:14
Alignment explanation
Indices: 29509051--29509088 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
29509041 GTTTGCCAGT
*
29509051 AAAATGTTTTCCGG
1 AAAATGATTTCCGG
*
29509065 AAAATGATTTCTGG
1 AAAATGATTTCCGG
29509079 AAAATGATTT
1 AAAATGATTT
29509089 ACTTTTCTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.37, C:0.08, G:0.18, T:0.37
Consensus pattern (14 bp):
AAAATGATTTCCGG
Found at i:29509097 original size:20 final size:20
Alignment explanation
Indices: 29509072--29509111 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
29509062 CGGAAAATGA
29509072 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
29509092 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
29509112 GAAAATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:29509101 original size:34 final size:33
Alignment explanation
Indices: 29509057--29509121 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 33
29509047 CAGTAAAATG
29509057 TTTTCCGGAAAATGATTT-CTGGAAAATGATTTAC
1 TTTTCCGGAAAATGATTTACT-GAAAAT-ATTTAC
*
29509091 TTTTCTGGAAAATGATTTACTGAAAATATTT
1 TTTTCCGGAAAATGATTTACTGAAAATATTT
29509122 TTCTGGTGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 4 0.14
34 23 0.79
35 2 0.07
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (33 bp):
TTTTCCGGAAAATGATTTACTGAAAATATTTAC
Found at i:29509308 original size:22 final size:24
Alignment explanation
Indices: 29509283--29509333 Score: 56
Period size: 26 Copynumber: 2.2 Consensus size: 24
29509273 TTATTTATAA
29509283 ATAAATAA-A-TCAA-ATT-AAAT
1 ATAAATAATACTCAATATTAAAAT
29509303 ATATAATAATACTCAATTATTAAAAT
1 ATA-AATAATACTCAA-TATTAAAAT
29509329 ATAAA
1 ATAAA
29509334 AGCATTGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
20 3 0.12
21 5 0.20
22 1 0.04
23 4 0.16
25 5 0.20
26 7 0.28
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (24 bp):
ATAAATAATACTCAATATTAAAAT
Found at i:29511807 original size:2 final size:2
Alignment explanation
Indices: 29511800--29511826 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
29511790 TGCTTTTACA
29511800 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
29511827 AGCAAGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:29512239 original size:6 final size:6
Alignment explanation
Indices: 29512228--29512261 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
29512218 TGTCAAGGAT
* *
29512228 AGGGGA AGGGGA AGGGGA AGGGAA AGGGAA AGGG
1 AGGGGA AGGGGA AGGGGA AGGGGA AGGGGA AGGG
29512262 AAGATCGGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (6 bp):
AGGGGA
Found at i:29512250 original size:17 final size:17
Alignment explanation
Indices: 29512230--29512264 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
29512220 TCAAGGATAG
* *
29512230 GGGAAGGGGAAGGGGAA
1 GGGAAAGGGAAAGGGAA
29512247 GGGAAAGGGAAAGGGAA
1 GGGAAAGGGAAAGGGAA
29512264 G
1 G
29512265 ATCGGTGTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (17 bp):
GGGAAAGGGAAAGGGAA
Found at i:29515659 original size:12 final size:12
Alignment explanation
Indices: 29515632--29515664 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
29515622 AGTGAAAATA
29515632 GAATTAAAGTAT
1 GAATTAAAGTAT
29515644 GAA-TAAAGTAT
1 GAATTAAAGTAT
29515655 GGAATTAAAG
1 -GAATTAAAG
29515665 CTTATTAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 8 0.42
12 6 0.32
13 5 0.26
ACGTcount: A:0.52, C:0.00, G:0.21, T:0.27
Consensus pattern (12 bp):
GAATTAAAGTAT
Found at i:29517348 original size:26 final size:26
Alignment explanation
Indices: 29517297--29517368 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
29517287 ATCTTCTCCG
**
29517297 AATTTTACCAAGGGTAAAATTGTCAA
1 AATTTTACCAAGGGTAAAATCATCAA
29517323 AATTTTACC-AGGGATAAAATCATCAA
1 AATTTTACCAAGGG-TAAAATCATCAA
* **
29517349 AACTTTATTAAGGGTAAAAT
1 AATTTTACCAAGGGTAAAAT
29517369 AGGGATGAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
25 4 0.10
26 31 0.79
27 4 0.10
ACGTcount: A:0.44, C:0.11, G:0.14, T:0.31
Consensus pattern (26 bp):
AATTTTACCAAGGGTAAAATCATCAA
Found at i:29522217 original size:15 final size:15
Alignment explanation
Indices: 29522193--29522227 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
29522183 ATTTTTTGGG
29522193 AATAAAATGAAATGA
1 AATAAAATGAAATGA
* *
29522208 AATGAAATGAAATAA
1 AATAAAATGAAATGA
29522223 AATAA
1 AATAA
29522228 TAATAACAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.11, T:0.20
Consensus pattern (15 bp):
AATAAAATGAAATGA
Found at i:29528255 original size:56 final size:56
Alignment explanation
Indices: 29528190--29528301 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
29528180 GTCATGTGTC
*
29528190 ACACATGGCCTACCACATAGCTTGGCACACGGCCGTGTGACATCAACAGTGAACTT
1 ACACATGGCCTACCACATAGCTTGGCACACGGCCGCGTGACATCAACAGTGAACTT
29528246 ACACATGGCCTACCACATAGCTTGGCACACGGCCGCGTGACATCAACAGTGAACTT
1 ACACATGGCCTACCACATAGCTTGGCACACGGCCGCGTGACATCAACAGTGAACTT
29528302 TTTGGATCTC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (56 bp):
ACACATGGCCTACCACATAGCTTGGCACACGGCCGCGTGACATCAACAGTGAACTT
Found at i:29530169 original size:29 final size:30
Alignment explanation
Indices: 29530094--29530213 Score: 127
Period size: 31 Copynumber: 4.0 Consensus size: 30
29530084 GATTAGATCA
* * *
29530094 AAATTAAAGTTTCAAGTATACATTTGAACC
1 AAATTAAAGTTTCATGTATACAATTGCACC
* * *
29530124 ACAATTAGAGTTTCATGTTTATAATTGCACC
1 A-AATTAAAGTTTCATGTATACAATTGCACC
*
29530155 AAATTAAAG-TTCATGTATACAATTGCACATT
1 AAATTAAAGTTTCATGTATACAATTGCAC--C
*
29530186 AAATCAAAG-TTCATGTATACAATTGCAC
1 AAATTAAAGTTTCATGTATACAATTGCAC
29530214 ATTAAATCAA
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
29 17 0.22
30 8 0.11
31 51 0.67
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.34
Consensus pattern (30 bp):
AAATTAAAGTTTCATGTATACAATTGCACC
Found at i:29530211 original size:31 final size:31
Alignment explanation
Indices: 29530155--29530235 Score: 144
Period size: 31 Copynumber: 2.6 Consensus size: 31
29530145 TAATTGCACC
*
29530155 AAATTAAAGTTCATGTATACAATTGCACATT
1 AAATCAAAGTTCATGTATACAATTGCACATT
29530186 AAATCAAAGTTCATGTATACAATTGCACATT
1 AAATCAAAGTTCATGTATACAATTGCACATT
*
29530217 AAATCAAAGGTCATGTATA
1 AAATCAAAGTTCATGTATA
29530236 ATTTTGAAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (31 bp):
AAATCAAAGTTCATGTATACAATTGCACATT
Found at i:29530717 original size:17 final size:17
Alignment explanation
Indices: 29530697--29530754 Score: 61
Period size: 17 Copynumber: 3.6 Consensus size: 17
29530687 ATTTTAATAG
29530697 ATTTAATATTTAGT-TTA
1 ATTTAATATTTA-TATTA
* *
29530714 ATTTAATACTTATCTTA
1 ATTTAATATTTATATTA
29530731 A--TAATATTT-TATTA
1 ATTTAATATTTATATTA
29530745 ATTTAATATT
1 ATTTAATATT
29530755 AAAGTGATGA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
14 5 0.14
15 7 0.20
16 8 0.23
17 15 0.43
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (17 bp):
ATTTAATATTTATATTA
Found at i:29530833 original size:61 final size:58
Alignment explanation
Indices: 29530767--29530882 Score: 169
Period size: 61 Copynumber: 1.9 Consensus size: 58
29530757 AGTGATGATC
* * *
29530767 TTAATATTAAATTTAATTTCATATTTATCTTATAGATAAATATTCTATTAATTTAATAAAT
1 TTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAATATTATATTAATTTAATAAAT
*
29530828 TTAATATTAAATTTAATCTAATATTTATCTTGATAACTATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
29530883 TTAAAGTGAT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
58 22 0.43
59 1 0.02
60 1 0.02
61 27 0.53
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.51
Consensus pattern (58 bp):
TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATAAAT
Found at i:29533475 original size:50 final size:50
Alignment explanation
Indices: 29533417--29533561 Score: 182
Period size: 50 Copynumber: 2.9 Consensus size: 50
29533407 CATTAAGGTT
** *
29533417 ATGAGAGGTCCCATGTAAGACCATATCTGGGACATGGTGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATATCTGGGACATGGCATGGGCACCGAG
** * * *
29533467 ATGAGAGGTCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCATGTAAGACCATATCTGGGACATGGCATGGGCACCGAG
** * *
29533517 ATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 ATGAGAGGTCCCATGTAAGACCATATCTGGGACATGGCATGGGCA
29533562 GTACAGAAAA
Statistics
Matches: 79, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 79 1.00
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATATCTGGGACATGGCATGGGCACCGAG
Found at i:29540657 original size:22 final size:22
Alignment explanation
Indices: 29540616--29540658 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
29540606 TATTCTACAT
* *
29540616 ATGTGGGTTGTAATATATATAC
1 ATGTGGGTGGTAATACATATAC
*
29540638 ATGTGGGTGGTTATACATATA
1 ATGTGGGTGGTAATACATATA
29540659 TTATATATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.30, C:0.05, G:0.26, T:0.40
Consensus pattern (22 bp):
ATGTGGGTGGTAATACATATAC
Found at i:29543374 original size:22 final size:22
Alignment explanation
Indices: 29543304--29543374 Score: 90
Period size: 22 Copynumber: 3.2 Consensus size: 22
29543294 AAATTCAATA
*
29543304 TCAATTTCCTTCAAAAATTCTC
1 TCAAATTCCTTCAAAAATTCTC
* *
29543326 T-TAATTCCGTTAAAAAATTCTC
1 TCAAATTCC-TTCAAAAATTCTC
*
29543348 TCAAATTCCTTCCAAAATTCTC
1 TCAAATTCCTTCAAAAATTCTC
29543370 TCAAA
1 TCAAA
29543375 CTCTCAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
21 5 0.12
22 30 0.73
23 6 0.15
ACGTcount: A:0.35, C:0.25, G:0.01, T:0.38
Consensus pattern (22 bp):
TCAAATTCCTTCAAAAATTCTC
Found at i:29543380 original size:30 final size:30
Alignment explanation
Indices: 29543345--29543403 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
29543335 TTAAAAAATT
*
29543345 CTCTCAAATTCCTTCCAAAATTCTCTCAAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAAA
29543375 CTCTCAAATTCCTTCCAAAATCCTCTCAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAA
29543404 TTTTCTTCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (30 bp):
CTCTCAAATTCCTTCCAAAATCCTCTCAAA
Found at i:29543411 original size:22 final size:22
Alignment explanation
Indices: 29543375--29543416 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
29543365 TTCTCTCAAA
*
29543375 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCAAAAATC
* *
29543397 CTCTCAATTTTCTTCAAAAA
1 CTCTCAAATTCCTTCAAAAA
29543417 ATCTCCAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.36
Consensus pattern (22 bp):
CTCTCAAATTCCTTCAAAAATC
Found at i:29545312 original size:18 final size:18
Alignment explanation
Indices: 29545279--29545313 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
29545269 AGGTATGTTT
* *
29545279 CCTAACCCTTATATGTAC
1 CCTAACCCATACATGTAC
29545297 CCTAACCCATACATGTA
1 CCTAACCCATACATGTA
29545314 TCCTTTTCCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.34, G:0.06, T:0.29
Consensus pattern (18 bp):
CCTAACCCATACATGTAC
Found at i:29545846 original size:28 final size:28
Alignment explanation
Indices: 29545812--29546091 Score: 302
Period size: 28 Copynumber: 10.3 Consensus size: 28
29545802 AACTCTAACC
*
29545812 TAATTTAGTTAAAAACCCTAACCTAATT
1 TAATTTAATTAAAAACCCTAACCTAATT
29545840 TAATTTAATTAAAAACTCTAACCCTAACCTAATT
1 TAATTTAATT--AAA----AACCCTAACCTAATT
*
29545874 TAACTTAATTAAAAACCCTAACC-----
1 TAATTTAATTAAAAACCCTAACCTAATT
**
29545897 TAATTTAATTAAAAACCCTAACCTAACC
1 TAATTTAATTAAAAACCCTAACCTAATT
*
29545925 TATTTTAATTAAAAACCCTAA-C----T
1 TAATTTAATTAAAAACCCTAACCTAATT
** *
29545948 TAACCTAATTAAAAACCCTAACCTAGTT
1 TAATTTAATTAAAAACCCTAACCTAATT
*
29545976 TAATTTAATTAAAAACCCTACCCTAATT
1 TAATTTAATTAAAAACCCTAACCTAATT
*
29546004 TAATTTAATTAAAAACCCTACCCTAATT
1 TAATTTAATTAAAAACCCTAACCTAATT
29546032 TAATTTAATTAAAAACCCTAACC-----
1 TAATTTAATTAAAAACCCTAACCTAATT
*
29546055 TAACTTAATTAAAAACCCTAACCTAATT
1 TAATTTAATTAAAAACCCTAACCTAATT
29546083 TAATTTAAT
1 TAATTTAAT
29546092 CCACGTAGCA
Statistics
Matches: 216, Mismatches: 15, Indels: 42
0.79 0.05 0.15
Matches are distributed among these distances:
23 62 0.29
24 1 0.00
27 1 0.00
28 122 0.56
30 3 0.01
32 3 0.01
34 24 0.11
ACGTcount: A:0.45, C:0.21, G:0.01, T:0.34
Consensus pattern (28 bp):
TAATTTAATTAAAAACCCTAACCTAATT
Found at i:29545856 original size:51 final size:51
Alignment explanation
Indices: 29545791--29546087 Score: 190
Period size: 51 Copynumber: 5.6 Consensus size: 51
29545781 TTTTGACATT
* * *
29545791 ATTTGATTAAAAACTCTAACCTAATTTAGTTAAAAACCCTAACCTAATTTA
1 ATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTA
29545842 ATTTAATTAAAAACTCTAACCCTAACCTAATTTAACTTAATTAAAAACCCTAACCTAATTTA
1 ATTTAATT--AAA----AACCCTAACCTAA--T---TTAATTAAAAACCCTAACCTAATTTA
*
29545904 A-TTAA--AAACCCTAA-CCTAACCTATTTTAATTAAAAACCCTAA-C----TTA
1 ATTTAATTAAA----AACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTA
** *
29545950 ACCTAATTAAAAACCCTAACCTAGTTTAATTTAATTAAAAACCCTACCCTAATTTA
1 ATTTAATTAAAAACCCTAACC-----TAATTTAATTAAAAACCCTAACCTAATTTA
*
29546006 ATTTAATTAAAAACCCTACCCTAATTTAATTTAATTAAAAACCCTAACC-----TA
1 ATTTAATTAAAAACCCTAACC-----TAATTTAATTAAAAACCCTAACCTAATTTA
*
29546057 ACTTAATTAAAAACCCTAACCTAATTTAATT
1 ATTTAATTAAAAACCCTAACCTAATTTAATT
29546088 TAATCCACGT
Statistics
Matches: 206, Mismatches: 15, Indels: 55
0.75 0.05 0.20
Matches are distributed among these distances:
45 2 0.01
46 21 0.10
47 3 0.01
49 3 0.01
50 1 0.00
51 64 0.31
52 1 0.00
53 3 0.01
54 1 0.00
56 56 0.27
57 20 0.10
59 1 0.00
61 4 0.02
62 26 0.13
ACGTcount: A:0.44, C:0.21, G:0.01, T:0.33
Consensus pattern (51 bp):
ATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTA
Found at i:29545860 original size:23 final size:23
Alignment explanation
Indices: 29545791--29545844 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
29545781 TTTTGACATT
*
29545791 ATTTGATTAAAAACTCTAACCTA
1 ATTTAATTAAAAACTCTAACCTA
* *
29545814 ATTTAGTTAAAAACCCTAACCTA
1 ATTTAATTAAAAACTCTAACCTA
29545837 ATTTAATT
1 ATTTAATT
29545845 TAATTAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.43, C:0.17, G:0.04, T:0.37
Consensus pattern (23 bp):
ATTTAATTAAAAACTCTAACCTA
Found at i:29545863 original size:34 final size:34
Alignment explanation
Indices: 29545825--29545896 Score: 126
Period size: 34 Copynumber: 2.1 Consensus size: 34
29545815 TTTAGTTAAA
* *
29545825 AACCCTAACCTAATTTAATTTAATTAAAAACTCT
1 AACCCTAACCTAATTTAACTTAATTAAAAACCCT
29545859 AACCCTAACCTAATTTAACTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAACTTAATTAAAAACCCT
29545893 AACC
1 AACC
29545897 TAATTTAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (34 bp):
AACCCTAACCTAATTTAACTTAATTAAAAACCCT
Found at i:29546088 original size:51 final size:51
Alignment explanation
Indices: 29545859--29546091 Score: 322
Period size: 51 Copynumber: 4.5 Consensus size: 51
29545849 TAAAAACTCT
* *
29545859 AACCCTAACCTAATTTAACTTAATTAAAAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAATTTAATTAAAAACCCTAACCTAACTTAATTAAA
** * * *
29545910 AACCCTAACCTAACCTATTTTAATTAAAAACCCTAACTTAACCTAATTAAA
1 AACCCTAACCTAATTTAATTTAATTAAAAACCCTAACCTAACTTAATTAAA
* * *
29545961 AACCCTAACCTAGTTTAATTTAATTAAAAACCCTACCCTAATTTAATTTAATTAAA
1 AACCCTAACCTAATTTAATTTAATTAAAAACCCTAACC-----TAACTTAATTAAA
*
29546017 AACCCTACCCTAATTTAATTTAATTAAAAACCCTAACCTAACTTAATTAAA
1 AACCCTAACCTAATTTAATTTAATTAAAAACCCTAACCTAACTTAATTAAA
29546068 AACCCTAACCTAATTTAATTTAAT
1 AACCCTAACCTAATTTAATTTAAT
29546092 CCACGTAGCA
Statistics
Matches: 157, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
51 111 0.71
56 46 0.29
ACGTcount: A:0.45, C:0.22, G:0.00, T:0.33
Consensus pattern (51 bp):
AACCCTAACCTAATTTAATTTAATTAAAAACCCTAACCTAACTTAATTAAA
Found at i:29547985 original size:124 final size:124
Alignment explanation
Indices: 29547765--29548030 Score: 399
Period size: 124 Copynumber: 2.1 Consensus size: 124
29547755 CCACGAGGGC
* *
29547765 GCGATTTGACACTATTTGCTCAGAAACGTAAAAAAAAATTATTTCCTACATGACCAATTGTAGCG
1 GCGATTTGACACTATTTGCTAAGAAACGTAAAAAAAAATTATTTCCTACATGACCAAGTGTAGCG
* * * **
29547830 AAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCATATAGCATCCTGGTATCA
66 AAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
* * * *
29547889 GCGATTTTATACTATTTGCTAAGAAAACGTCAAAAAAAATTATTTCTTACATGACC-AGTGTAGC
1 GCGATTTGACACTATTTGCTAAG-AAACGTAAAAAAAAATTATTTCCTACATGACCAAGTGTAGC
29547953 GAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
65 GAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
**
29548013 GCGATTTCCCACTATTTG
1 GCGATTTGACACTATTTG
29548031 ACCAGATACG
Statistics
Matches: 127, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
124 97 0.76
125 30 0.24
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.30
Consensus pattern (124 bp):
GCGATTTGACACTATTTGCTAAGAAACGTAAAAAAAAATTATTTCCTACATGACCAAGTGTAGCG
AAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
Found at i:29548672 original size:19 final size:20
Alignment explanation
Indices: 29548625--29548674 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
29548615 TTTGTTAAAT
*
29548625 AATAATTTAATATTTTACTTA
1 AATAATATAATATTTTAC-TA
29548646 AAT-A-ATAATATTTTA-TA
1 AATAATATAATATTTTACTA
29548663 AATAATATAATA
1 AATAATATAATA
29548675 ATATATATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 5 0.19
18 1 0.04
19 16 0.62
20 1 0.04
21 3 0.12
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
AATAATATAATATTTTACTA
Found at i:29549585 original size:18 final size:18
Alignment explanation
Indices: 29549558--29549592 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
29549548 TTCTAAAAAA
29549558 ATTTATTTT-AATTTTTC
1 ATTTATTTTAAATTTTTC
29549575 ATTTCATTTTAAATTTTT
1 ATTT-ATTTTAAATTTTT
29549593 TAACTATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 5 0.31
19 7 0.44
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTATTTTAAATTTTTC
Found at i:29550854 original size:44 final size:46
Alignment explanation
Indices: 29550764--29550855 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
29550754 TTTGGTTCGT
*
29550764 TGTAATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAA
*
29550810 TGTAATGGAATAGATGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAA
29550854 TG
1 TG
29550856 GAATAGAGGT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 20 0.45
45 3 0.07
46 21 0.48
ACGTcount: A:0.26, C:0.04, G:0.29, T:0.40
Consensus pattern (46 bp):
TGTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAA
Found at i:29550856 original size:39 final size:42
Alignment explanation
Indices: 29550762--29550872 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 42
29550752 CGTTTGGTTC
*
29550762 GTTGTAATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTG
1 GTTGTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTG
*
29550804 GTTGAATGTAATGGAATAGATGCGTAAT-GGT-ATTCTTGTGTTTG
1 G-T---TGTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTG
*
29550848 GTTG-AATGGAATAGAGGTGTAATAG
1 GTTGTAATGGAATAGAGGCGTAATAG
29550873 CATAAAGAAA
Statistics
Matches: 60, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
39 17 0.28
40 3 0.05
42 1 0.02
43 2 0.03
44 13 0.22
45 3 0.05
46 21 0.35
ACGTcount: A:0.28, C:0.04, G:0.31, T:0.38
Consensus pattern (42 bp):
GTTGTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTG
Found at i:29551124 original size:20 final size:21
Alignment explanation
Indices: 29551085--29551124 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
29551075 AATTTACTAA
*
29551085 TAAAATCATAATATATAATAC
1 TAAAATCATAATATAAAATAC
*
29551106 TAAAAT-ATAATTTAAAATA
1 TAAAATCATAATATAAAATA
29551125 ATTATTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAATCATAATATAAAATAC
Found at i:29551137 original size:26 final size:28
Alignment explanation
Indices: 29551092--29551171 Score: 92
Period size: 28 Copynumber: 2.8 Consensus size: 28
29551082 TAATAAAATC
29551092 ATAATATATAATACTAAAATATAATTTAA-A
1 ATAATATATAAT--T-AAATATAATTTAATA
*
29551122 ATAAT-TATTATTAAATATAATTTAATA
1 ATAATATATAATTAAATATAATTTAATA
* *
29551149 ATAATATATAATTTAATAAAATT
1 ATAATATATAATTAAATATAATT
29551172 CTTATTCTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
26 13 0.30
27 7 0.16
28 14 0.32
29 5 0.11
30 5 0.11
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (28 bp):
ATAATATATAATTAAATATAATTTAATA
Found at i:29554957 original size:28 final size:27
Alignment explanation
Indices: 29554926--29554993 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 27
29554916 AATTACTAAT
*
29554926 AAAATAATAAAAGTTTCCTATGTTTAAA
1 AAAATAATAAAA-ATTCCTATGTTTAAA
*
29554954 AAAATACTATAAAAATTCCTATTTTTAAA
1 AAAATA--ATAAAAATTCCTATGTTTAAA
29554983 ATAAA-AATAAA
1 A-AAATAATAAA
29554994 CATGCTATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
27 5 0.14
28 6 0.17
29 15 0.43
30 9 0.26
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.34
Consensus pattern (27 bp):
AAAATAATAAAAATTCCTATGTTTAAA
Found at i:29555545 original size:7 final size:7
Alignment explanation
Indices: 29555533--29555558 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
29555523 CGATCCCTTC
29555533 TTTTTCT
1 TTTTTCT
29555540 TTTTTCT
1 TTTTTCT
29555547 TTTTTCT
1 TTTTTCT
29555554 TTTTT
1 TTTTT
29555559 TGAGGTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTCT
Found at i:29568467 original size:17 final size:17
Alignment explanation
Indices: 29568435--29568467 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
29568425 ATAATGTACG
*
29568435 AATATATATATGTGTGT
1 AATATATATATATGTGT
29568452 AATATATATATATGTG
1 AATATATATATATGTG
29568468 GATCGAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.45
Consensus pattern (17 bp):
AATATATATATATGTGT
Found at i:29568743 original size:41 final size:41
Alignment explanation
Indices: 29568688--29568856 Score: 284
Period size: 41 Copynumber: 4.1 Consensus size: 41
29568678 ATTGGTGAAT
*
29568688 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATC
1 TGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTGATC
* *
29568729 TGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATA
1 TGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTGATC
*
29568770 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATC
1 TGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTGATC
*
29568811 TGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATC
1 TGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTGATC
*
29568852 CGAAT
1 TGAAT
29568857 ATGATGAATT
Statistics
Matches: 119, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 119 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (41 bp):
TGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTGATC
Found at i:29568818 original size:82 final size:82
Alignment explanation
Indices: 29568688--29568850 Score: 326
Period size: 82 Copynumber: 2.0 Consensus size: 82
29568678 ATTGGTGAAT
29568688 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
1 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
29568753 GCTAAGTGCCGGTGATA
66 GCTAAGTGCCGGTGATA
29568770 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
1 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
29568835 GCTAAGTGCCGGTGAT
66 GCTAAGTGCCGGTGAT
29568851 CCGAATATGA
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 81 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (82 bp):
TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
GCTAAGTGCCGGTGATA
Found at i:29569118 original size:37 final size:37
Alignment explanation
Indices: 29569049--29569166 Score: 130
Period size: 37 Copynumber: 3.5 Consensus size: 37
29569039 TTATGTGTGC
* *
29569049 ATATGTAGGCATTCGGCATAGGTGGATAT-A---TAT
1 ATATGTATGCATTCGGCATAGGTAGATATAAGTGTAT
29569082 -T-TGTATGCATTCGGCATAGGTAGATATAAGTGTAT
1 ATATGTATGCATTCGGCATAGGTAGATATAAGTGTAT
* *
29569117 ATATGTATGCATTCGGCATAGGTGGGTATAAGTG-A-
1 ATATGTATGCATTCGGCATAGGTAGATATAAGTGTAT
29569152 ATATG--TGCATTCGGC
1 ATATGTATGCATTCGGC
29569167 CTTTATAGTT
Statistics
Matches: 75, Mismatches: 4, Indels: 12
0.82 0.04 0.13
Matches are distributed among these distances:
31 24 0.32
32 2 0.03
33 10 0.13
35 8 0.11
36 2 0.03
37 29 0.39
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.34
Consensus pattern (37 bp):
ATATGTATGCATTCGGCATAGGTAGATATAAGTGTAT
Found at i:29574785 original size:12 final size:12
Alignment explanation
Indices: 29574770--29574799 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
29574760 TAAATTTAAT
29574770 TTAATACTTATC
1 TTAATACTTATC
*
29574782 TTAATAGTTATC
1 TTAATACTTATC
29574794 TTAATA
1 TTAATA
29574800 ATATTATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.10, G:0.03, T:0.50
Consensus pattern (12 bp):
TTAATACTTATC
Found at i:29574907 original size:61 final size:59
Alignment explanation
Indices: 29574833--29574948 Score: 144
Period size: 58 Copynumber: 1.9 Consensus size: 59
29574823 AGTGATTATC
* * ** *
29574833 TTAATATTAAATTTACTTTAATGTTTATCTTGTAGATAAATATTCTATTAATTTAATAAAAT
1 TTAATATTAAATTTAATATAATACTTATC-T-T-GATAAATATTATATTAATTTAATAAAAT
*
29574895 TTAATATT-AATTTAATATAATACTTATCTTGATAAGTATTATATTAATTTAATA
1 TTAATATTAAATTTAATATAATACTTATCTTGATAAATATTATATTAATTTAATA
29574949 TTAAAGTGGT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
58 22 0.46
59 1 0.02
60 1 0.02
61 16 0.33
62 8 0.17
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (59 bp):
TTAATATTAAATTTAATATAATACTTATCTTGATAAATATTATATTAATTTAATAAAAT
Found at i:29574908 original size:11 final size:11
Alignment explanation
Indices: 29574878--29574912 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
29574868 ATAAATATTC
29574878 TATTAATTTAA
1 TATTAATTTAA
*
29574889 TA-AAATTTAA
1 TATTAATTTAA
29574899 TATTAATTTAA
1 TATTAATTTAA
29574910 TAT
1 TAT
29574913 AATACTTATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
TATTAATTTAA
Found at i:29574915 original size:10 final size:10
Alignment explanation
Indices: 29574881--29574915 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
29574871 AATATTCTAT
29574881 TAATTTAATA
1 TAATTTAATA
*
29574891 AAATTTAATA
1 TAATTTAATA
29574901 TTAATTTAATA
1 -TAATTTAATA
29574912 TAAT
1 TAAT
29574916 ACTTATCTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (10 bp):
TAATTTAATA
Found at i:29576425 original size:17 final size:17
Alignment explanation
Indices: 29576395--29576429 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
29576385 AATATGGAAA
*
29576395 GTAATCTTAAAAGATTT
1 GTAATATTAAAAGATTT
*
29576412 GTAATATTATAAGATTT
1 GTAATATTAAAAGATTT
29576429 G
1 G
29576430 ATTTTGTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.14, T:0.43
Consensus pattern (17 bp):
GTAATATTAAAAGATTT
Found at i:29577781 original size:25 final size:26
Alignment explanation
Indices: 29577745--29577793 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
29577735 CGCTCAATTT
29577745 ATTTCTAGTATTTATTTT-TATTTGA
1 ATTTCTAGTATTTATTTTATATTTGA
29577770 ATTT-TAGTTATTTATTTTATATTT
1 ATTTCTAG-TATTTATTTTATATTT
29577794 AGATTTAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 3 0.14
25 14 0.64
26 5 0.23
ACGTcount: A:0.24, C:0.02, G:0.06, T:0.67
Consensus pattern (26 bp):
ATTTCTAGTATTTATTTTATATTTGA
Found at i:29577794 original size:19 final size:19
Alignment explanation
Indices: 29577741--29577795 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
29577731 ATTGCGCTCA
29577741 ATTTATTTCTAGTATTTA-TT
1 ATTTATTT-TA-TATTTAGTT
*
29577761 -TTTATTTGA-ATTTTAGTT
1 ATTTATTTTATA-TTTAGTT
29577779 ATTTATTTTATATTTAG
1 ATTTATTTTATATTTAG
29577796 ATTTAATCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
16 1 0.03
17 4 0.14
18 3 0.10
19 20 0.69
20 1 0.03
ACGTcount: A:0.25, C:0.02, G:0.07, T:0.65
Consensus pattern (19 bp):
ATTTATTTTATATTTAGTT
Found at i:29579400 original size:7 final size:7
Alignment explanation
Indices: 29579388--29579446 Score: 64
Period size: 7 Copynumber: 7.7 Consensus size: 7
29579378 GTCCTTTGCC
29579388 TATTTTT
1 TATTTTT
29579395 TATTTTT
1 TATTTTT
29579402 TATTTTT
1 TATTTTT
29579409 TATTTTTTT
1 TA--TTTTT
*
29579418 TGTTATTT
1 TATT-TTT
29579426 TATTATTT
1 TATT-TTT
29579434 TATTTTAT
1 TATTTT-T
29579442 TATTT
1 TATTT
29579447 CCAACACTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
7 20 0.43
8 20 0.43
9 6 0.13
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (7 bp):
TATTTTT
Found at i:29579408 original size:8 final size:8
Alignment explanation
Indices: 29579390--29579446 Score: 57
Period size: 8 Copynumber: 7.2 Consensus size: 8
29579380 CCTTTGCCTA
29579390 TTTTTTA-
1 TTTTTTAT
29579397 TTTTTTA-
1 TTTTTTAT
29579404 TTTTTTAT
1 TTTTTTAT
29579412 TTTTTT-T
1 TTTTTTAT
29579419 GTTATTTTAT
1 -TT-TTTTAT
*
29579429 TATTTTAT
1 TTTTTTAT
*
29579437 TTTATTAT
1 TTTTTTAT
29579445 TT
1 TT
29579447 CCAACACTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
7 15 0.35
8 22 0.51
9 5 0.12
10 1 0.02
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.82
Consensus pattern (8 bp):
TTTTTTAT
Found at i:29579426 original size:24 final size:24
Alignment explanation
Indices: 29579390--29579439 Score: 75
Period size: 25 Copynumber: 2.1 Consensus size: 24
29579380 CCTTTGCCTA
29579390 TTTTTTATTTTTTATT-TTTTATT
1 TTTTTTATTTTTTATTATTTTATT
*
29579413 TTTTTTGTTATTTTATTATTTTATT
1 TTTTTTATT-TTTTATTATTTTATT
29579438 TT
1 TT
29579440 ATTATTTCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 8 0.33
24 7 0.29
25 9 0.38
ACGTcount: A:0.14, C:0.00, G:0.02, T:0.84
Consensus pattern (24 bp):
TTTTTTATTTTTTATTATTTTATT
Found at i:29579446 original size:13 final size:12
Alignment explanation
Indices: 29579388--29579442 Score: 67
Period size: 13 Copynumber: 4.3 Consensus size: 12
29579378 GTCCTTTGCC
29579388 TATTTTTTATTTTT
1 TATTTTTTA--TTT
29579402 TATTTTTTATTT
1 TATTTTTTATTT
29579414 T-TTTTGTTATTT
1 TATTTT-TTATTT
29579426 TATTATTTTATTT
1 TATT-TTTTATTT
29579439 TATT
1 TATT
29579443 ATTTCCAACA
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
11 4 0.11
12 11 0.29
13 12 0.32
14 11 0.29
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.82
Consensus pattern (12 bp):
TATTTTTTATTT
Found at i:29587216 original size:13 final size:13
Alignment explanation
Indices: 29587198--29587227 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
29587188 TCTTAATCAA
*
29587198 TATTATATAATAT
1 TATTATAGAATAT
29587211 TATTATAGAATAT
1 TATTATAGAATAT
29587224 TATT
1 TATT
29587228 TTTTATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (13 bp):
TATTATAGAATAT
Found at i:29589937 original size:45 final size:45
Alignment explanation
Indices: 29589748--29589957 Score: 192
Period size: 45 Copynumber: 4.7 Consensus size: 45
29589738 AACCGAAATA
* * **
29589748 ATAAGACCATAGTTGAAAGATATTATGGCACTAAACCAAAAATGC
1 ATAAGACCATAGTTGAAAGATACTATGGCACTAAATCGGAAATGC
* * *
29589793 GTAAGACCATAGTTGAAAGATACTATGGCATTAAAGTC--AATATGA
1 ATAAGACCATAGTTGAAAGATACTATGGCACTAAA-TCGGAA-ATGC
* * * * * *
29589838 ATAAGACCATAGTTGAAAGATATTAGGGCATTACATCGGTAACG-
1 ATAAGACCATAGTTGAAAGATACTATGGCACTAAATCGGAAATGC
* ** *
29589882 ATCAAAACCATAGTTGAAAGATACTATGGCACTATTTCGGGAATGC
1 AT-AAGACCATAGTTGAAAGATACTATGGCACTAAATCGGAAATGC
* * *
29589928 ATAAGACCATGGTTGGAAGATACCATGGCA
1 ATAAGACCATAGTTGAAAGATACTATGGCA
29589958 TCCTTTGGAA
Statistics
Matches: 136, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
44 6 0.04
45 126 0.93
46 4 0.03
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.24
Consensus pattern (45 bp):
ATAAGACCATAGTTGAAAGATACTATGGCACTAAATCGGAAATGC
Found at i:29591439 original size:56 final size:56
Alignment explanation
Indices: 29591331--29591450 Score: 145
Period size: 56 Copynumber: 2.2 Consensus size: 56
29591321 GGTGTTAGGG
* *
29591331 TATTATTATGGGATACTATCTTTTAACAATTTGATTCCTAATAAGGTGTTATATAA
1 TATTATTATGGGATACTATCTCTTAACAATTTGATTCCTAATAAGGTATTATATAA
* * * * * *
29591387 TATTATTATGTGATATTATCTCTTAGCAATTTGATTCGTAAT-GGGATATTATATGA
1 TATTATTATGGGATACTATCTCTTAACAATTTGATTCCTAATAAGG-TATTATATAA
29591443 TA-TATTAT
1 TATTATTAT
29591451 CTTTTAGCAA
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
55 8 0.15
56 47 0.85
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (56 bp):
TATTATTATGGGATACTATCTCTTAACAATTTGATTCCTAATAAGGTATTATATAA
Done.