Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62175169
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 981721 characters in sequence are not A, C, G, or T
File 119 of 202
Found at i:36863365 original size:23 final size:23
Alignment explanation
Indices: 36863328--36863378 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
36863318 GAGAGAGAAA
* *
36863328 TGTAATATCCTGAAAATTACTAC
1 TGTAATACCCCGAAAATTACTAC
36863351 TGTAATACCCCGAAAATTACTAC
1 TGTAATACCCCGAAAATTACTAC
*
36863374 AGTAA
1 TGTAA
36863379 GAAAGTAGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (23 bp):
TGTAATACCCCGAAAATTACTAC
Found at i:36869878 original size:27 final size:27
Alignment explanation
Indices: 36869789--36869992 Score: 93
Period size: 27 Copynumber: 7.6 Consensus size: 27
36869779 CGCCAGAAAA
* * * *
36869789 TGGAGGCCTTTGTGACAATCTATGAAA
1 TGGAAGCCTTTGTGGCAATTTATGAAG
* * * ** *
36869816 TTGAAGCCCTTGTGGAAATGAATGAAA
1 TGGAAGCCTTTGTGGCAATTTATGAAG
36869843 TGGAAGCCTTTGTGGCAATTTATGAAG
1 TGGAAGCCTTTGTGGCAATTTATGAAG
* * *
36869870 TGGAAGCCTTCGTGG-GATCTATGGAA-
1 TGGAAGCCTTTGTGGCAATTTAT-GAAG
* *
36869896 AGGAA-CACGTTCGTGGCACATTCTA--AA-
1 TGGAAGC-C-TTTGTGGCA-ATT-TATGAAG
* *
36869923 -GGAAGGGCC-TTGTGGCAATCATCTGAAG
1 TGGAA--GCCTTTGTGGCAAT-TTATGAAG
*
36869951 -GAAATGCCTTTGTGGCAATTTATGAAG
1 TGGAA-GCCTTTGTGGCAATTTATGAAG
*
36869978 TGGAAGCCTTCGTGG
1 TGGAAGCCTTTGTGG
36869993 GATCTATAGA
Statistics
Matches: 134, Mismatches: 28, Indels: 30
0.70 0.15 0.16
Matches are distributed among these distances:
25 4 0.03
26 21 0.16
27 87 0.65
28 17 0.13
29 3 0.02
30 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.27
Consensus pattern (27 bp):
TGGAAGCCTTTGTGGCAATTTATGAAG
Found at i:36869912 original size:54 final size:54
Alignment explanation
Indices: 36869854--36870020 Score: 161
Period size: 54 Copynumber: 3.1 Consensus size: 54
36869844 GGAAGCCTTT
*
36869854 GTGGCAATTTATGAAGTGGAAGCCTTCGTGGGATCTATGGAAAGGAACACGTTC
1 GTGGCAATTTATGAAGTGGAAGCCTTCGTGGGATCTATAGAAAGGAACACGTTC
* * * *
36869908 GTGGCACATTCTA--AA--GGAAGGGCCTT-GTGGCAATC-ATCTG-AAGGAA-ATGCCTTT
1 GTGGCA-ATT-TATGAAGTGGAA--GCCTTCGTGG-GATCTAT-AGAAAGGAACA--CGTTC
36869962 GTGGCAATTTATGAAGTGGAAGCCTTCGTGGGATCTATAGAAAGGAACACGTTC
1 GTGGCAATTTATGAAGTGGAAGCCTTCGTGGGATCTATAGAAAGGAACACGTTC
36870016 GTGGC
1 GTGGC
36870021 GCATTCTAAA
Statistics
Matches: 89, Mismatches: 8, Indels: 32
0.69 0.06 0.25
Matches are distributed among these distances:
52 7 0.08
53 15 0.17
54 45 0.51
55 15 0.17
56 7 0.08
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.26
Consensus pattern (54 bp):
GTGGCAATTTATGAAGTGGAAGCCTTCGTGGGATCTATAGAAAGGAACACGTTC
Found at i:36870037 original size:108 final size:108
Alignment explanation
Indices: 36869848--36870075 Score: 429
Period size: 108 Copynumber: 2.1 Consensus size: 108
36869838 TGAAATGGAA
*
36869848 GCCTTTGTGGCAATTTATGAAGTGGAAGCCTTCGTGGGATCTATGGAAAGGAACACGTTCGTGGC
1 GCCTTTGTGGCAATTTATGAAGTGGAAGCCTTCGTGGGATCTATAGAAAGGAACACGTTCGTGGC
*
36869913 ACATTCTAAAGGAAGGGCCTTGTGGCAATCATCTGAAGGAAAT
66 ACATTCTAAAGGAAGGGCCTTGTGGCAATCATCTAAAGGAAAT
36869956 GCCTTTGTGGCAATTTATGAAGTGGAAGCCTTCGTGGGATCTATAGAAAGGAACACGTTCGTGGC
1 GCCTTTGTGGCAATTTATGAAGTGGAAGCCTTCGTGGGATCTATAGAAAGGAACACGTTCGTGGC
*
36870021 GCATTCTAAAGGAAGGGCCTTGTGGCAATCATCTAAAGGAAAT
66 ACATTCTAAAGGAAGGGCCTTGTGGCAATCATCTAAAGGAAAT
36870064 GCCTTTGTGGCA
1 GCCTTTGTGGCA
36870076 GACCCTAAAA
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
108 117 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.26
Consensus pattern (108 bp):
GCCTTTGTGGCAATTTATGAAGTGGAAGCCTTCGTGGGATCTATAGAAAGGAACACGTTCGTGGC
ACATTCTAAAGGAAGGGCCTTGTGGCAATCATCTAAAGGAAAT
Found at i:36870041 original size:54 final size:52
Alignment explanation
Indices: 36869875--36870045 Score: 138
Period size: 54 Copynumber: 3.2 Consensus size: 52
36869865 TGAAGTGGAA
*
36869875 GCCTTCGTGGGATCTATGGAAAGGAACACGTTCGTGGCACATTCTAAAGGAAGG
1 GCCTT-GTGGGATCTATAGAAAGGAACACGTTCGTGGC-CATTCTAAAGGAAGG
* * * * *
36869929 GCCTTGTGGCAATC-ATCTG-AAGGAA-ATGCCTTTGTGGCAATT-TATGAAGTGGAA--
1 GCCTTGTGG-GATCTAT-AGAAAGGAACA--CGTTCGTGGCCATTCTA--AA--GGAAGG
36869983 GCCTTCGTGGGATCTATAGAAAGGAACACGTTCGTGGCGCATTCTAAAGGAAGG
1 GCCTT-GTGGGATCTATAGAAAGGAACACGTTCGTGGC-CATTCTAAAGGAAGG
36870037 GCCTTGTGG
1 GCCTTGTGG
36870046 CAATCATCTA
Statistics
Matches: 91, Mismatches: 10, Indels: 33
0.68 0.07 0.25
Matches are distributed among these distances:
52 7 0.08
53 19 0.21
54 43 0.47
55 15 0.16
56 7 0.08
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (52 bp):
GCCTTGTGGGATCTATAGAAAGGAACACGTTCGTGGCCATTCTAAAGGAAGG
Found at i:36870074 original size:54 final size:53
Alignment explanation
Indices: 36869908--36870074 Score: 148
Period size: 54 Copynumber: 3.1 Consensus size: 53
36869898 GAACACGTTC
*
36869908 GTGGCACATTCTAAAGGAAGGGCCTTGTGGCAATCATCTGAAGGAAATGCCTTT
1 GTGGC-CATTCTAAAGGAAGGGCCTTGTGGCAATCATCTAAAGGAAATGCCTTT
* * ** * *
36869962 GTGGCAATT-TATGAAGTGGAA--GCCTTCGTGG-GATCTATAGAAAGGAACA--CGTTC
1 GTGGCCATTCTA--AA--GGAAGGGCCTT-GTGGCAATC-ATCTAAAGGAA-ATGCCTTT
36870016 GTGGCGCATTCTAAAGGAAGGGCCTTGTGGCAATCATCTAAAGGAAATGCCTTT
1 GTGGC-CATTCTAAAGGAAGGGCCTTGTGGCAATCATCTAAAGGAAATGCCTTT
36870070 GTGGC
1 GTGGC
36870075 AGACCCTAAA
Statistics
Matches: 86, Mismatches: 13, Indels: 28
0.68 0.10 0.22
Matches are distributed among these distances:
52 7 0.08
53 16 0.19
54 41 0.48
55 15 0.17
56 7 0.08
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (53 bp):
GTGGCCATTCTAAAGGAAGGGCCTTGTGGCAATCATCTAAAGGAAATGCCTTT
Found at i:36870186 original size:53 final size:53
Alignment explanation
Indices: 36870107--36870290 Score: 224
Period size: 53 Copynumber: 3.5 Consensus size: 53
36870097 TAAATACAGA
* * * * * *
36870107 AAACACTAAAAGAAGGATATGTATGGCTAATTCTAAAGAATGGCAAGTACAGT
1 AAACTCTAAGAGAATGATATGTATGGCTAACTCTAAAGAATGGTAAGTACGGT
* *
36870160 AAACTCTGAGAGAATGATATGCATGGCTAACTCTAAAGAATGGTAAGTACGGT
1 AAACTCTAAGAGAATGATATGTATGGCTAACTCTAAAGAATGGTAAGTACGGT
* * * * * *
36870213 AAACTCTAAAAGAATTATATGTGTGGCTAACTCTAAAAGACTGGTAAGTATGGC
1 AAACTCTAAGAGAATGATATGTATGGCTAACTCT-AAAGAATGGTAAGTACGGT
*
36870267 AAACTCTAAGAGAATGATGTGTAT
1 AAACTCTAAGAGAATGATATGTAT
36870291 AGTGAAATTT
Statistics
Matches: 110, Mismatches: 20, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
53 74 0.67
54 36 0.33
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.26
Consensus pattern (53 bp):
AAACTCTAAGAGAATGATATGTATGGCTAACTCTAAAGAATGGTAAGTACGGT
Found at i:36870290 original size:27 final size:27
Alignment explanation
Indices: 36870107--36870290 Score: 120
Period size: 27 Copynumber: 6.9 Consensus size: 27
36870097 TAAATACAGA
* *
36870107 AAACACTAAAAGAAGGATATGTATGGC
1 AAACTCTAAAAGAATGATATGTATGGC
* * ** * ** *
36870134 TAATTCT-AAAGAATGGCAAGTACAGT
1 AAACTCTAAAAGAATGATATGTATGGC
* * *
36870160 AAACTCTGAGAGAATGATATGCATGGC
1 AAACTCTAAAAGAATGATATGTATGGC
* * * * *
36870187 TAACTCT-AAAGAATGGTAAGTACGGT
1 AAACTCTAAAAGAATGATATGTATGGC
* *
36870213 AAACTCTAAAAGAATTATATGTGTGGC
1 AAACTCTAAAAGAATGATATGTATGGC
* * * *
36870240 TAACTCTAAAAGACTGGTAAGTATGGC
1 AAACTCTAAAAGAATGATATGTATGGC
* *
36870267 AAACTCTAAGAGAATGATGTGTAT
1 AAACTCTAAAAGAATGATATGTAT
36870291 AGTGAAATTT
Statistics
Matches: 109, Mismatches: 46, Indels: 4
0.69 0.29 0.03
Matches are distributed among these distances:
26 36 0.33
27 73 0.67
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.26
Consensus pattern (27 bp):
AAACTCTAAAAGAATGATATGTATGGC
Found at i:36872356 original size:41 final size:42
Alignment explanation
Indices: 36872297--36872400 Score: 124
Period size: 41 Copynumber: 2.5 Consensus size: 42
36872287 GTGATAATCG
* ** *
36872297 GGCTTT-CAGCCTAGCAGGCTTTATGCCGGTGAATTATTTCA
1 GGCTTTACAGCCTAGCAGGCTTTATACCGGTGAACCATATCA
* * *
36872338 GGCTTTACA-CCTAACAGGCTTAATACCGGTGTACCATATCA
1 GGCTTTACAGCCTAGCAGGCTTTATACCGGTGAACCATATCA
36872379 GGCTTTA-AGCCTAGCAGGCTTT
1 GGCTTTACAGCCTAGCAGGCTTT
36872401 GTATCAGTGT
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
40 1 0.02
41 49 0.94
42 2 0.04
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.31
Consensus pattern (42 bp):
GGCTTTACAGCCTAGCAGGCTTTATACCGGTGAACCATATCA
Found at i:36878186 original size:35 final size:35
Alignment explanation
Indices: 36878107--36878195 Score: 90
Period size: 35 Copynumber: 2.5 Consensus size: 35
36878097 GTTATCTATT
*
36878107 GGTCCTTT-GAGGCGACACCGTGTAAATGATATGCA
1 GGTCCTTTAG-GGCGACACCGTGTAAATGATATACA
* * * *
36878142 GGTCGTTTAGGGCGACACCGTGTAAGTGGTATATA
1 GGTCCTTTAGGGCGACACCGTGTAAATGATATACA
* * *
36878177 TGTCCTTTAGAGCAACACC
1 GGTCCTTTAGGGCGACACC
36878196 TCAAAAGGGG
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
35 43 0.98
36 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (35 bp):
GGTCCTTTAGGGCGACACCGTGTAAATGATATACA
Found at i:36880888 original size:40 final size:40
Alignment explanation
Indices: 36880844--36880970 Score: 191
Period size: 40 Copynumber: 3.2 Consensus size: 40
36880834 ATAATTATTG
36880844 CCTGAATGCACATACGTGCCTCTGTTTGTACTTCGGTACC
1 CCTGAATGCACATACGTGCCTCTGTTTGTACTTCGGTACC
* *
36880884 CCTGAATGCACATACGTGCCCCTGTTTGTACTCCGGTACC
1 CCTGAATGCACATACGTGCCTCTGTTTGTACTTCGGTACC
* * * * *
36880924 CCTAAATGCACATATGTGCCTCTGTTTATACTTTGGTAAC
1 CCTGAATGCACATACGTGCCTCTGTTTGTACTTCGGTACC
36880964 CCTGAAT
1 CCTGAAT
36880971 CAAATAGTAT
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.32
Consensus pattern (40 bp):
CCTGAATGCACATACGTGCCTCTGTTTGTACTTCGGTACC
Found at i:36880907 original size:20 final size:20
Alignment explanation
Indices: 36880844--36880907 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
36880834 ATAATTATTG
36880844 CCTGAATGCACATACGTGCC
1 CCTGAATGCACATACGTGCC
* ** * * *
36880864 TCTGTTTGTAC-TTCGGTACC
1 CCTGAATGCACATAC-GTGCC
36880884 CCTGAATGCACATACGTGCC
1 CCTGAATGCACATACGTGCC
36880904 CCTG
1 CCTG
36880908 TTTGTACTCC
Statistics
Matches: 30, Mismatches: 12, Indels: 4
0.65 0.26 0.09
Matches are distributed among these distances:
19 2 0.07
20 26 0.87
21 2 0.07
ACGTcount: A:0.19, C:0.33, G:0.20, T:0.28
Consensus pattern (20 bp):
CCTGAATGCACATACGTGCC
Found at i:36880925 original size:20 final size:20
Alignment explanation
Indices: 36880865--36880926 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 20
36880855 ATACGTGCCT
*
36880865 CTGTTTGTACTTCGGTACCC
1 CTGTTTGTACTACGGTACCC
** * *
36880885 CTGAATGCACATAC-GTGCCC
1 CTGTTTGTAC-TACGGTACCC
*
36880905 CTGTTTGTACTCCGGTACCC
1 CTGTTTGTACTACGGTACCC
36880925 CT
1 CT
36880927 AAATGCACAT
Statistics
Matches: 30, Mismatches: 10, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
19 2 0.07
20 26 0.87
21 2 0.07
ACGTcount: A:0.15, C:0.34, G:0.19, T:0.32
Consensus pattern (20 bp):
CTGTTTGTACTACGGTACCC
Found at i:36881288 original size:11 final size:11
Alignment explanation
Indices: 36881272--36881296 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
36881262 CATGAAAATA
36881272 ATTATTTTATT
1 ATTATTTTATT
36881283 ATTATTTTATT
1 ATTATTTTATT
36881294 ATT
1 ATT
36881297 TATGGGACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
ATTATTTTATT
Found at i:36884546 original size:25 final size:25
Alignment explanation
Indices: 36884518--36884611 Score: 100
Period size: 25 Copynumber: 3.8 Consensus size: 25
36884508 CGGACACTCC
*
36884518 ATAGCTCGTGTGAGCATACCGATTT
1 ATAGCTCGTATGAGCATACCGATTT
*
36884543 ATAGCTCGTGA-GAGCATACCGATCT
1 ATAGCTCGT-ATGAGCATACCGATTT
* *** * *
36884568 ATATCTTAAATGAGCATACTGATTC
1 ATAGCTCGTATGAGCATACCGATTT
36884593 ATAGCTCGTATGAGCATAC
1 ATAGCTCGTATGAGCATAC
36884612 ATGTACATGA
Statistics
Matches: 54, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
24 1 0.02
25 53 0.98
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (25 bp):
ATAGCTCGTATGAGCATACCGATTT
Found at i:36887499 original size:28 final size:28
Alignment explanation
Indices: 36887442--36887501 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
36887432 TGGACAAATA
*
36887442 AAGACATGAATTTAATATGTAATATACT
1 AAGACATGAATTTAATATGTAACATACT
* * *
36887470 AAGACATG-ATTTAAATTTGTAGCATGCT
1 AAGACATGAATTT-AATATGTAACATACT
36887498 AAGA
1 AAGA
36887502 GAAAACAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 4 0.15
28 23 0.85
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.33
Consensus pattern (28 bp):
AAGACATGAATTTAATATGTAACATACT
Found at i:36899379 original size:21 final size:21
Alignment explanation
Indices: 36899353--36899405 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
36899343 GTTGTTGAGA
*
36899353 AAGAAGTTGCTGCTGCAGAAG
1 AAGAAGTTGCTGCTGAAGAAG
* * *
36899374 AGGAAGTTGTTGTTGAAGAAG
1 AAGAAGTTGCTGCTGAAGAAG
*
36899395 AATAAGTTGCT
1 AAGAAGTTGCT
36899406 AAAAATGAAA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.34, C:0.08, G:0.32, T:0.26
Consensus pattern (21 bp):
AAGAAGTTGCTGCTGAAGAAG
Found at i:36908639 original size:24 final size:24
Alignment explanation
Indices: 36908610--36908678 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 24
36908600 AAATATAAAA
36908610 AATAATAATACA-ATATAACTTTTA-
1 AATAATAATACATA-ATAA-TTTTAG
*
36908634 AGTAATAATACATAATAATTTTAG
1 AATAATAATACATAATAATTTTAG
* *
36908658 AATAATAATGCACAATAATTT
1 AATAATAATACATAATAATTT
36908679 CAAAAATATG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.13
24 33 0.85
25 1 0.03
ACGTcount: A:0.52, C:0.07, G:0.04, T:0.36
Consensus pattern (24 bp):
AATAATAATACATAATAATTTTAG
Found at i:36911294 original size:39 final size:39
Alignment explanation
Indices: 36911251--36911326 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
36911241 TTATGTTAGC
36911251 ATGCATGTTATAGGATATTGATAAGATCAATTAAATGAT
1 ATGCATGTTATAGGATATTGATAAGATCAATTAAATGAT
36911290 ATGCATGTTATAGGATATTGATAAGATCAATTAAATG
1 ATGCATGTTATAGGATATTGATAAGATCAATTAAATG
36911327 TTTAAATGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.41, C:0.05, G:0.18, T:0.36
Consensus pattern (39 bp):
ATGCATGTTATAGGATATTGATAAGATCAATTAAATGAT
Found at i:36925144 original size:25 final size:25
Alignment explanation
Indices: 36925109--36925170 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
36925099 ACGAGTTGTA
* * *
36925109 AACGGTCAGCTCTTCCGAGCTGAAT
1 AACGGTAAGCTCCTCCGAGATGAAT
*
36925134 AACGGTAAGCTCCTCTGAGATGAAT
1 AACGGTAAGCTCCTCCGAGATGAAT
*
36925159 AATGGTAAGCTC
1 AACGGTAAGCTC
36925171 ATATGAGTTG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (25 bp):
AACGGTAAGCTCCTCCGAGATGAAT
Found at i:36925177 original size:25 final size:25
Alignment explanation
Indices: 36925129--36925198 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
36925119 TCTTCCGAGC
* * *
36925129 TGAATAACGGTAAGCTCCTCTGAGA
1 TGAATAATGGTAAGCTCATATGAGA
*
36925154 TGAATAATGGTAAGCTCATATGAGT
1 TGAATAATGGTAAGCTCATATGAGA
* *
36925179 TGAGTATTGGTAAGCTCATA
1 TGAATAATGGTAAGCTCATA
36925199 AGAGCTAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (25 bp):
TGAATAATGGTAAGCTCATATGAGA
Found at i:36928239 original size:13 final size:13
Alignment explanation
Indices: 36928221--36928262 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
36928211 ACTGCCTGAC
36928221 ACACGGGCGTGTT
1 ACACGGGCGTGTT
* **
36928234 ACAC-GGCCTGAC
1 ACACGGGCGTGTT
36928246 ACACGGGCGTGTT
1 ACACGGGCGTGTT
36928259 ACAC
1 ACAC
36928263 ATCCTGACAC
Statistics
Matches: 22, Mismatches: 6, Indels: 2
0.73 0.20 0.07
Matches are distributed among these distances:
12 9 0.41
13 13 0.59
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (13 bp):
ACACGGGCGTGTT
Found at i:36928242 original size:25 final size:25
Alignment explanation
Indices: 36928206--36928277 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
36928196 TATTTCGAGA
*
36928206 GTTACACTGCCTGACACACGGGCGT
1 GTTACACAGCCTGACACACGGGCGT
*
36928231 GTTACACGGCCTGACACACGGGCGT
1 GTTACACAGCCTGACACACGGGCGT
*
36928256 GTTACACATCCTGACACACGGG
1 GTTACACAGCCTGACACACGGG
36928278 TTTGTGACAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (25 bp):
GTTACACAGCCTGACACACGGGCGT
Found at i:36931610 original size:38 final size:37
Alignment explanation
Indices: 36931541--36931613 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
36931531 TTTTCATAAT
* *
36931541 TTCACTTTTTCACTTTTAATCACTATTCAATTCAAAA
1 TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
36931578 TTCACTTTTCCA-TTTTCAAGTCAATATTCAATTCAA
1 TTCACTTTTCCACTTTT-AA-TCAATATTCAATTCAA
36931614 TTCCACACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.32, C:0.22, G:0.01, T:0.45
Consensus pattern (37 bp):
TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
Found at i:36931769 original size:23 final size:23
Alignment explanation
Indices: 36931743--36931864 Score: 208
Period size: 23 Copynumber: 5.3 Consensus size: 23
36931733 ATAAGTGTCA
36931743 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
36931766 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
36931789 CATTGAAAAGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
36931812 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
36931835 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
36931858 CACTGAT
1 CACTGAT
36931865 CAATAACACT
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 93 1.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:36934372 original size:18 final size:18
Alignment explanation
Indices: 36934349--36934389 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
36934339 TGACAAAGAT
36934349 TTGTCATTGACATAAGGA
1 TTGTCATTGACATAAGGA
36934367 TTGTCATTGACATAAGGA
1 TTGTCATTGACATAAGGA
36934385 -TGTCA
1 TTGTCA
36934390 AAATCAATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.32, C:0.12, G:0.22, T:0.34
Consensus pattern (18 bp):
TTGTCATTGACATAAGGA
Found at i:36935335 original size:71 final size:71
Alignment explanation
Indices: 36935258--36935474 Score: 159
Period size: 71 Copynumber: 3.1 Consensus size: 71
36935248 TAATTTCGAT
36935258 CAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAGTTAATATATTAATTTGA
1 CAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAGTTAATATATTAATTTGA
36935323 TTCATA
66 TTCATA
** * ** * * * * *
36935329 CAAAATATTAATTG-TAT-ATATTTTACCAAATT-TATT--AATATAA-ACAGGT-ATATTAATT
1 CAAAATA-TAAAAGACATGA-AAATTA--ATATTCTTTTGGAA-AGAATATAGTTAATA-T-ATT
**
36935387 AA-TT--TTGGT-
59 AATTTGATTCATA
* * *
36935396 CAAAATATAAAAGACATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGA
1 CAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAGTTAATATATTAATTTGA
36935461 TTCATA
66 TTCATA
36935467 CAAAATAT
1 CAAAATAT
36935475 TAATTTTATA
Statistics
Matches: 101, Mismatches: 27, Indels: 36
0.62 0.16 0.22
Matches are distributed among these distances:
65 4 0.04
66 7 0.07
67 20 0.20
68 11 0.11
69 6 0.06
70 13 0.13
71 29 0.29
72 7 0.07
73 4 0.04
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (71 bp):
CAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAGTTAATATATTAATTTGA
TTCATA
Found at i:36935410 original size:138 final size:138
Alignment explanation
Indices: 36935162--36935583 Score: 702
Period size: 138 Copynumber: 3.1 Consensus size: 138
36935152 GAGAACATAG
*
36935162 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* * *
36935227 AATATACACAGTTATTTTAATTAATTTCGATCAAAATATAAAAGACATGAAAATTAATATTCTTT
66 AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTT
36935292 TGGAAAGA
131 TGGAAAGA
* * *
36935300 ATATAGTTAATATATTAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* * *
36935365 AATATAAACAGGTATATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
66 AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTT
36935430 TGGAAAGA
131 TGGAAAGA
*
36935438 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTTTATATATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* * *
36935503 AATATAAATAGTTATATTAATTAATTCCGGTGAAAATATAAAAGACATGAAAATTAATAATT-TT
66 AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAAT-ATTCTT
36935567 TTGGAAAGA
130 TTGGAAAGA
36935576 ATATAATT
1 ATATAATT
36935584 TTTTTTCTAA
Statistics
Matches: 263, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
138 260 0.99
139 3 0.01
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.41
Consensus pattern (138 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTTT
TGGAAAGA
Found at i:36942246 original size:9 final size:9
Alignment explanation
Indices: 36942232--36942262 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
36942222 GTTAAACGAA
36942232 TCGAGTTAT
1 TCGAGTTAT
*
36942241 TCGAGTTAA
1 TCGAGTTAT
36942250 TCGAGTTAT
1 TCGAGTTAT
36942259 TCGA
1 TCGA
36942263 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:36942315 original size:9 final size:9
Alignment explanation
Indices: 36942298--36942334 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
36942288 TTTGAGTTCG
36942298 AATTCGAAT
1 AATTCGAAT
*
36942307 AACTCGAAT
1 AATTCGAAT
36942316 AATTCGAAT
1 AATTCGAAT
36942325 AATTCGAAT
1 AATTCGAAT
36942334 A
1 A
36942335 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:36942725 original size:18 final size:19
Alignment explanation
Indices: 36942690--36942753 Score: 78
Period size: 19 Copynumber: 3.4 Consensus size: 19
36942680 CTCCCCCCTA
36942690 TTTACTTTCCCTCAAAACTT
1 TTTACTTTCCC-CAAAACTT
36942710 TTTA-TTTCCCCAAAACTT
1 TTTACTTTCCCCAAAACTT
* *
36942728 TTTATTTTCCCCCTAAAC-T
1 TTTACTTT-CCCCAAAACTT
36942747 TTTACTT
1 TTTACTT
36942754 CTCACCCTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
18 12 0.30
19 16 0.40
20 12 0.30
ACGTcount: A:0.23, C:0.28, G:0.00, T:0.48
Consensus pattern (19 bp):
TTTACTTTCCCCAAAACTT
Found at i:36947463 original size:17 final size:18
Alignment explanation
Indices: 36947416--36947466 Score: 52
Period size: 17 Copynumber: 2.8 Consensus size: 18
36947406 ATGGATTTTT
*
36947416 GGATTATGCGTTGAGTTG
1 GGATTATGCGTTGAGTTC
*
36947434 GTGATTCA-ACGTTGA-TTC
1 G-GATT-ATGCGTTGAGTTC
36947452 GGATTATGCGTTGAG
1 GGATTATGCGTTGAG
36947467 CAAGTGATGC
Statistics
Matches: 26, Mismatches: 3, Indels: 8
0.70 0.08 0.22
Matches are distributed among these distances:
16 1 0.04
17 10 0.38
18 4 0.15
19 10 0.38
20 1 0.04
ACGTcount: A:0.20, C:0.10, G:0.33, T:0.37
Consensus pattern (18 bp):
GGATTATGCGTTGAGTTC
Found at i:36948312 original size:29 final size:29
Alignment explanation
Indices: 36948279--36948338 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
36948269 TATGCTACTA
36948279 ATTTTGTTTGTAAAACATTTCCTTACAAC
1 ATTTTGTTTGTAAAACATTTCCTTACAAC
36948308 ATTTTGTTTGTAAAACATTTCCTTACAAC
1 ATTTTGTTTGTAAAACATTTCCTTACAAC
36948337 AT
1 AT
36948339 GTTTTCTCGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.32, C:0.17, G:0.07, T:0.45
Consensus pattern (29 bp):
ATTTTGTTTGTAAAACATTTCCTTACAAC
Found at i:36948326 original size:16 final size:16
Alignment explanation
Indices: 36948279--36948327 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
36948269 TATGCTACTA
36948279 ATTTTGTTTGTAAAAC
1 ATTTTGTTTGTAAAAC
** *
36948295 A-TTT-CCT-TACAAC
1 ATTTTGTTTGTAAAAC
36948308 ATTTTGTTTGTAAAAC
1 ATTTTGTTTGTAAAAC
36948324 ATTT
1 ATTT
36948328 CCTTACAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 6
0.67 0.17 0.17
Matches are distributed among these distances:
13 6 0.25
14 4 0.17
15 4 0.17
16 10 0.42
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.49
Consensus pattern (16 bp):
ATTTTGTTTGTAAAAC
Found at i:36950107 original size:50 final size:49
Alignment explanation
Indices: 36949964--36950148 Score: 163
Period size: 50 Copynumber: 3.7 Consensus size: 49
36949954 CGAAACACCA
* * * * * * * * *
36949964 TTTGTGGACAAGCCATCATTGATTTGCTGATAAACTGCCACTAATAACAC
1 TTTGTGGACAAACCACCACTAATTTGCAGATATACTGCCACTGAT-ATAT
* * * * * *
36950014 TTTGTAGACAAGCCACTACTGATATGCATTATATACTGCCACTGATATATT
1 TTTGTGGACAAACCACCACTAATTTGCA-GATATACTGCCACTGATATA-T
* *
36950065 TTTGTGGACAAACCACCACTAATTTGCAGATATACTGGCACTGTTATAT
1 TTTGTGGACAAACCACCACTAATTTGCAGATATACTGCCACTGATATAT
* * *
36950114 TTTGTGGACAAGCCACCATTGATTTGCAGATATAC
1 TTTGTGGACAAACCACCACTAATTTGCAGATATAC
36950149 AACCACTTCT
Statistics
Matches: 111, Mismatches: 22, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
49 33 0.30
50 41 0.37
51 37 0.33
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (49 bp):
TTTGTGGACAAACCACCACTAATTTGCAGATATACTGCCACTGATATAT
Found at i:36950446 original size:6 final size:6
Alignment explanation
Indices: 36950435--36950459 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
36950425 CATACTTCAT
36950435 AATCAC AATCAC AATCAC AATCAC A
1 AATCAC AATCAC AATCAC AATCAC A
36950460 TCAATTATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (6 bp):
AATCAC
Found at i:36950943 original size:7 final size:7
Alignment explanation
Indices: 36950931--36950955 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
36950921 TCATAATATT
36950931 AAGAGAA
1 AAGAGAA
36950938 AAGAGAA
1 AAGAGAA
36950945 AAGAGAA
1 AAGAGAA
36950952 AAGA
1 AAGA
36950956 AAAGTAGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (7 bp):
AAGAGAA
Found at i:36957564 original size:44 final size:43
Alignment explanation
Indices: 36957507--36957708 Score: 135
Period size: 44 Copynumber: 4.7 Consensus size: 43
36957497 GTCTGATGCG
* *
36957507 ATCCGCTCTACTGCAACTTCAGAGAGATAAGATCAATCATTTTA
1 ATCCGCTCCACTGCAACTTCAGGGAGATAAGATC-ATCATTTTA
* * * * *
36957551 ATCCGCTCCACTGCAATTTCAGGGAGAGAGGATTGGCTTC-TTCT-
1 ATCCGCTCCACTGCAACTTCAGGGAGATAAGA-T--CATCATTTTA
* * * ***
36957595 CTCTGCTCCACTGCAACTTCAGGGAGATAAGAT--TGGA-TGCG
1 ATCCGCTCCACTGCAACTTCAGGGAGATAAGATCAT-CATTTTA
* * * * *
36957636 ATCCGTTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTA
1 ATCCGCTCCACTGCAACTTCAGGGAGATAAGATC-ATCATTTTA
* *
36957680 ATCCGCTCCACTACAATTTCAGGGAGATA
1 ATCCGCTCCACTGCAACTTCAGGGAGATA
36957709 GAATTATCGG
Statistics
Matches: 119, Mismatches: 29, Indels: 20
0.71 0.17 0.12
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 28 0.24
43 2 0.02
44 80 0.67
45 4 0.03
46 2 0.02
47 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (43 bp):
ATCCGCTCCACTGCAACTTCAGGGAGATAAGATCATCATTTTA
Found at i:36957729 original size:129 final size:128
Alignment explanation
Indices: 36957475--36957755 Score: 350
Period size: 129 Copynumber: 2.2 Consensus size: 128
36957465 AATAGCTTCA
*
36957475 ACTACAACTTTAAGGGA-ATAAGGTCT-GATGCGATCCGCTCTACTGCAACTTCAGAGAGATAAG
1 ACTACAAC-TT-AGGGAGATAAGAT-TGGATGCGATCCGCTCTACTGCAACTTCAGAGAGATAAG
* * * * ** **
36957538 ATCAATCATTTTAATCCGCTCCACTGCAATTTCAGGGAGAGAGGATTGGCTTCTTCTCTCTGCTC
63 ATCAATCACTTTAATCCGCTCCACTACAATTTCAGGGAGAGAGAATTAGCGGCTTCAATCTGCTC
36957603 C
128 C
* *
36957604 ACTGCAACTTCAGGGAGATAAGATTGGATGCGATCCGTTCTACTGCAACTTCAGAGAGATAAGAT
1 ACTACAACTT-AGGGAGATAAGATTGGATGCGATCCGCTCTACTGCAACTTCAGAGAGATAAGAT
* * * *
36957669 CTATTACTTTAATCCGCTCCACTACAATTTCAGGGAGATAGAATTATCGGCTTCAATCTGCTCC
65 CAATCACTTTAATCCGCTCCACTACAATTTCAGGGAGAGAGAATTAGCGGCTTCAATCTGCTCC
* **
36957733 GCTACTGCTTAGGGAGATAAGAT
1 ACTACAACTTAGGGAGATAAGAT
36957756 CTGTAATTTT
Statistics
Matches: 130, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
128 21 0.16
129 109 0.84
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (128 bp):
ACTACAACTTAGGGAGATAAGATTGGATGCGATCCGCTCTACTGCAACTTCAGAGAGATAAGATC
AATCACTTTAATCCGCTCCACTACAATTTCAGGGAGAGAGAATTAGCGGCTTCAATCTGCTCC
Found at i:36958262 original size:131 final size:130
Alignment explanation
Indices: 36957719--36958671 Score: 1233
Period size: 131 Copynumber: 7.3 Consensus size: 130
36957709 GAATTATCGG
* * * * * * *
36957719 CTTCAATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTACTG
1 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTG
* ** * * * * *
36957784 ACCAGGGACATAAGG-CTTGTGGCTTAAATCTACTTCGTTAC-ACT--TGAAGATAAGACTCACC
66 -CCAGGGAAAT-AGGACTTGTGGCTTAAATCTGTTTCCTTACTCCTGGGGAAGATAAGATTCGCC
36957845 GT
129 GT
* ** * * * * *
36957847 CTTCAATCTGCTCCGTTACTGCTTAGGGAGACAAGATCTGTAATTTTCAACCTACTCCACTGCTG
1 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTG
* * * * *
36957912 ACCAGGGAGATAGGAGTTGTGGCTTAAATCTGCTTCCTTAC-ACT--TGAAGATAAGATTCGCCG
66 -CCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCTTACTCCTGGGGAAGATAAGATTCGCCG
36957974 T
130 T
* * * * *
36957975 CTTCGATCTGCTCCGCTACTACTTAGGGAGACAAGATCTGTAATTTCCAAACCTATTCCACTGCT
1 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCC-AACCTATTCCACTGCT
* * * *
36958040 GACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACT-CT--TGAAGATAAGATTTGCC
65 G-CCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCTTACTCCTGGGGAAGATAAGATTCGCC
36958102 GT
129 GT
* *
36958104 CTTCGATCTGCTCCACTATTGCTTAGGGAGAGAAGATCTATAGTTTCCAACCTATTCCACTGCTG
1 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTG
* * *
36958169 CTCAAGGAAATAGGACTTGTGGCTTAAATCTGTTTCCTTACTTCTGGGGAAGATAAGATTCTCCG
66 C-CAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCTTACTCCTGGGGAAGATAAGATTCGCCG
36958234 T
130 T
*
36958235 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTACTG
1 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTG
* * * *
36958300 TTCAGGGAAATAGGACTTGTGGCTTCAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGTCG
66 -CCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCTTACTCCTGGGGAAGATAAGATTCGCCG
36958365 T
130 T
* * * *
36958366 CTTCGACCTGCTCCACTATTGCTTAGGGAGATAAGATCTATAGTTTCTAACCTATTCCACTACTG
1 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTG
* *
36958431 CCCAGGGAAATATGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCG
66 -CCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCTTACTCCTGGGGAAGATAAGATTCGCCG
36958496 T
130 T
36958497 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTA
1 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCT-
** * *
36958562 TTCAGGGAAATAAGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCG
65 GCCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCTTACTCCTGGGGAAGATAAGATTCGCCG
36958627 T
130 T
*
36958628 CTTCGATCTGCTCCACTATTGCTTAAGGAGATAAGATCTGTAGT
1 CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGT
36958672 ATTCACTGAT
Statistics
Matches: 761, Mismatches: 55, Indels: 15
0.92 0.07 0.02
Matches are distributed among these distances:
127 4 0.01
128 213 0.28
129 119 0.16
131 425 0.56
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (130 bp):
CTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTG
CCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCTTACTCCTGGGGAAGATAAGATTCGCCGT
Found at i:36958294 original size:44 final size:43
Alignment explanation
Indices: 36958246--36958557 Score: 138
Period size: 44 Copynumber: 7.1 Consensus size: 43
36958236 TTCGATCTGC
*
36958246 TCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTAT
1 TCCACTACTGCTTAGGGAGATAAGATCTGTAGTTT-CAACCTAT
* * * * * *
36958290 TCCACTACTG-TTCAGGGAAATAGGA-CTTGTGGCTTCAATCTGTT
1 TCCACTACTGCTT-AGGGAGATAAGATC-TGTAGTTTCAACCT-AT
* * * * **
36958334 TCC-CTACT-CCTGGGGAAGATAAGAT-TCGTCGTCTTCGACCTGC
1 TCCACTACTGCTTAGGG-AGATAAGATCT-GTAGT-TTCAACCTAT
* *
36958377 TCCACTATTGCTTAGGGAGATAAGATCTATAGTTTCTAACCTAT
1 TCCACTACTGCTTAGGGAGATAAGATCTGTAGTTTC-AACCTAT
** * * * * * * *
36958421 TCCACTACTGCCCAGGGAAATATGA-CTTGTGGCTTAAATCTGTT
1 TCCACTACTGCTTAGGGAGATAAGATC-TGTAGTTTCAACCT-AT
* * ** * * **
36958465 TCC-CTACT-CCTGGGGAAGATAAGAT-TCGCCGTCTTCGATCTGC
1 TCCACTACTGCTTAGGG-AGATAAGATCT-GTAGT-TTCAACCTAT
*
36958508 TCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTAT
1 TCCACTACTGCTTAGGGAGATAAGATCTGTAGTTT-CAACCTAT
36958552 TCCACT
1 TCCACT
36958558 GCTATTCAGG
Statistics
Matches: 190, Mismatches: 56, Indels: 44
0.66 0.19 0.15
Matches are distributed among these distances:
42 10 0.05
43 52 0.27
44 116 0.61
45 12 0.06
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (43 bp):
TCCACTACTGCTTAGGGAGATAAGATCTGTAGTTTCAACCTAT
Found at i:36959924 original size:7 final size:7
Alignment explanation
Indices: 36959912--36959941 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
36959902 CCGTCATTAC
36959912 TTTTCAT
1 TTTTCAT
36959919 TTTTCA-
1 TTTTCAT
36959925 TTTTCAT
1 TTTTCAT
36959932 TTTTCAT
1 TTTTCAT
36959939 TTT
1 TTT
36959942 CATCCCTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTTCAT
Found at i:36959930 original size:13 final size:13
Alignment explanation
Indices: 36959912--36959944 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
36959902 CCGTCATTAC
36959912 TTTTCATTTTTCA
1 TTTTCATTTTTCA
36959925 TTTTCATTTTTCA
1 TTTTCATTTTTCA
36959938 TTTTCAT
1 TTTTCAT
36959945 CCCTCTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTCATTTTTCA
Found at i:36965724 original size:19 final size:20
Alignment explanation
Indices: 36965697--36965737 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
36965687 AATTGAATTT
36965697 AAATCAAAAT-CAAAAAGAA
1 AAATCAAAATACAAAAAGAA
* *
36965716 AAATGAAAATACAAAAATAA
1 AAATCAAAATACAAAAAGAA
36965736 AA
1 AA
36965738 CAAAGTTAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.76, C:0.07, G:0.05, T:0.12
Consensus pattern (20 bp):
AAATCAAAATACAAAAAGAA
Found at i:36979076 original size:39 final size:39
Alignment explanation
Indices: 36979022--36979156 Score: 182
Period size: 39 Copynumber: 3.4 Consensus size: 39
36979012 AACTTGTTTT
**
36979022 TGAGTATTGCAATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
36979061 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* * *
36979100 TGTA-TATTGTGATATGATGATTAAATGTTATGTGATTATT
1 TG-AGTATTGTGATAT-ATGCTTGAATGTTATGTGATTATA
* *
36979140 TGTGTAATGTGATATAT
1 TGAGTATTGTGATATAT
36979157 ATTTAAAAGT
Statistics
Matches: 86, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
39 52 0.60
40 34 0.40
ACGTcount: A:0.30, C:0.02, G:0.21, T:0.47
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
Found at i:36979120 original size:25 final size:22
Alignment explanation
Indices: 36979088--36979135 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 22
36979078 GCTTGAATGT
*
36979088 TATGTGATTATATGTATATTGTGA
1 TATGTGATTAAATGT-TA-TGTGA
36979112 TATGATGATTAAATGTTATGTGA
1 TATG-TGATTAAATGTTATGTGA
36979135 T
1 T
36979136 TATTTGTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 6 0.27
24 6 0.27
25 10 0.45
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (22 bp):
TATGTGATTAAATGTTATGTGA
Found at i:36984835 original size:17 final size:18
Alignment explanation
Indices: 36984813--36984847 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
36984803 CCCCATGCTA
36984813 AAGTGAAAA-GTGATTTT
1 AAGTGAAAACGTGATTTT
36984830 AAGTGAAAACGTGATTTT
1 AAGTGAAAACGTGATTTT
36984848 GTGGCCTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.40, C:0.03, G:0.23, T:0.34
Consensus pattern (18 bp):
AAGTGAAAACGTGATTTT
Found at i:36984963 original size:48 final size:47
Alignment explanation
Indices: 36984892--36984994 Score: 143
Period size: 48 Copynumber: 2.2 Consensus size: 47
36984882 AGGTGGAAGA
* * * * * *
36984892 ATGTGGCAGTTTATTTGCAAAAGTGGTGGCTTGTCCACAAATTTTATT
1 ATGTGGTAGTATATTTACAAAAGTGATGGCCTGTCCAC-AATTTGATT
36984940 ATGTGGTAGTATATTTACAAAAGTGATGGCCTGTCCACAATTTGATT
1 ATGTGGTAGTATATTTACAAAAGTGATGGCCTGTCCACAATTTGATT
36984987 ATGTGGTA
1 ATGTGGTA
36984995 CATTACCTGA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
47 16 0.33
48 33 0.67
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.38
Consensus pattern (47 bp):
ATGTGGTAGTATATTTACAAAAGTGATGGCCTGTCCACAATTTGATT
Found at i:36995861 original size:19 final size:19
Alignment explanation
Indices: 36995837--36995879 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
36995827 GCATTGGAAG
36995837 GTAAGGTTAATATGCATGT
1 GTAAGGTTAATATGCATGT
36995856 GTAAGGTTAATATGCATGT
1 GTAAGGTTAATATGCATGT
*
36995875 TTAAG
1 GTAAG
36995880 TCTCAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.37
Consensus pattern (19 bp):
GTAAGGTTAATATGCATGT
Found at i:36999469 original size:27 final size:26
Alignment explanation
Indices: 36999439--36999516 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
36999429 CGACTCTTAG
*
36999439 GGGTATAACAGTCATTTTACCCTAT-GA
1 GGGTATATC-GTCATTTTACCCT-TCGA
* *
36999466 GGGTATATCGATTATTTTACCCTTCGG
1 GGGTATATCG-TCATTTTACCCTTCGA
*
36999493 GGGTATTTCGGTCATTTTACCCTT
1 GGGTATATC-GTCATTTTACCCTT
36999517 TAGGGCTATT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.40
Consensus pattern (26 bp):
GGGTATATCGTCATTTTACCCTTCGA
Found at i:36999526 original size:27 final size:26
Alignment explanation
Indices: 36999449--36999536 Score: 86
Period size: 27 Copynumber: 3.3 Consensus size: 26
36999439 GGGTATAACA
* *
36999449 GTCATTTTACCCTATGAGGGTATATCG
1 GTCATTTTACCCT-TCAGGGTATTTCG
* * *
36999476 ATTATTTTACCCTTCGGGGGTATTTCG
1 GTCATTTTACCCTTC-AGGGTATTTCG
* *
36999503 GTCATTTTACCCTTTAGGGCTATTTAG
1 GTCATTTTACCCTTCAGGG-TATTTCG
36999530 GTCATTT
1 GTCATTT
36999537 ATTGACCACC
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
26 4 0.08
27 45 0.92
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.43
Consensus pattern (26 bp):
GTCATTTTACCCTTCAGGGTATTTCG
Found at i:37000550 original size:27 final size:27
Alignment explanation
Indices: 37000520--37000571 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
37000510 GAGAACACCC
*
37000520 AAAACCAAGAGGAGAGAGGAAAGAGAA
1 AAAACCAAAAGGAGAGAGGAAAGAGAA
* * *
37000547 AAAAGCAAAAGGAGAGGGGGAAGAG
1 AAAACCAAAAGGAGAGAGGAAAGAG
37000572 GAAAGAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.56, C:0.06, G:0.38, T:0.00
Consensus pattern (27 bp):
AAAACCAAAAGGAGAGAGGAAAGAGAA
Found at i:37004495 original size:19 final size:19
Alignment explanation
Indices: 37004471--37004508 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
37004461 TTGTATGAGA
* *
37004471 TTTGCAGTTTGGTGCCTCT
1 TTTGCACTTCGGTGCCTCT
37004490 TTTGCACTTCGGTGCCTCT
1 TTTGCACTTCGGTGCCTCT
37004509 GTATACATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.05, C:0.26, G:0.24, T:0.45
Consensus pattern (19 bp):
TTTGCACTTCGGTGCCTCT
Found at i:37015175 original size:16 final size:16
Alignment explanation
Indices: 37015154--37015185 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37015144 CAAGGGACAC
37015154 ACAACCGGGTCAGATG
1 ACAACCGGGTCAGATG
*
37015170 ACAACCGTGTCAGATG
1 ACAACCGGGTCAGATG
37015186 GCATGTGTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.25, G:0.28, T:0.16
Consensus pattern (16 bp):
ACAACCGGGTCAGATG
Found at i:37017732 original size:15 final size:16
Alignment explanation
Indices: 37017703--37017732 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37017693 CAAACATACT
37017703 TTAACACATTATCAAA
1 TTAACACATTATCAAA
37017719 TTAACACA-TATCAA
1 TTAACACATTATCAA
37017733 CAAGACACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:37036030 original size:28 final size:30
Alignment explanation
Indices: 37035969--37036031 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
37035959 ACATTGCCGT
* * *
37035969 GTGTCACACACGGCTGAGACACACGTTCAT
1 GTGTCACACACGGCTAAGACACACGATCAC
*
37035999 GTGTCACACACGGTTAAGACACAC-ATC-C
1 GTGTCACACACGGCTAAGACACACGATCAC
37036027 GTGTC
1 GTGTC
37036032 TTAGGCCGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 5 0.17
29 2 0.07
30 22 0.76
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (30 bp):
GTGTCACACACGGCTAAGACACACGATCAC
Found at i:37036676 original size:15 final size:16
Alignment explanation
Indices: 37036647--37036676 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37036637 CAAACATACT
37036647 TTAACACATTATCAAA
1 TTAACACATTATCAAA
37036663 TTAACACA-TATCAA
1 TTAACACATTATCAA
37036677 CAATGCATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:37038874 original size:38 final size:38
Alignment explanation
Indices: 37038830--37038904 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
37038820 ATAGAATTTA
37038830 ATTATTATTTAAAAGAGTTTTAGATAAATAATAATTAT
1 ATTATTATTTAAAAGAGTTTTAGATAAATAATAATTAT
37038868 ATTATTATTTAAAAGAGTTTTAGATAAATAATAATTA
1 ATTATTATTTAAAAGAGTTTTAGATAAATAATAATTA
37038905 AATAGAATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (38 bp):
ATTATTATTTAAAAGAGTTTTAGATAAATAATAATTAT
Found at i:37038927 original size:48 final size:49
Alignment explanation
Indices: 37038868--37038985 Score: 195
Period size: 48 Copynumber: 2.4 Consensus size: 49
37038858 TAATAATTAT
*
37038868 ATTATTATTTAAAAGAGTTTTAGATAAATA-ATAATTAAATAGAATTT-A
1 ATTATTATTTAAAAGAGTTTTAAATAAA-AGATAATTAAATAGAATTTAA
37038916 ATTATTATTTAAAAGAGTTTTAAATAAAAGATAATTAAATAGAATTTAA
1 ATTATTATTTAAAAGAGTTTTAAATAAAAGATAATTAAATAGAATTTAA
*
37038965 ATTATTATCTAAAAGAGTTTT
1 ATTATTATTTAAAAGAGTTTT
37038986 TAAAAATCAA
Statistics
Matches: 66, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
47 1 0.02
48 44 0.67
49 21 0.32
ACGTcount: A:0.49, C:0.01, G:0.08, T:0.42
Consensus pattern (49 bp):
ATTATTATTTAAAAGAGTTTTAAATAAAAGATAATTAAATAGAATTTAA
Found at i:37038937 original size:22 final size:22
Alignment explanation
Indices: 37038868--37038938 Score: 63
Period size: 22 Copynumber: 3.0 Consensus size: 22
37038858 TAATAATTAT
37038868 ATTATTATTTAAAAGAGTTTTA
1 ATTATTATTTAAAAGAGTTTTA
* * *
37038890 GATAAATAATAATTAAATAGA-ATTTA
1 -AT---TATTATTTAAA-AGAGTTTTA
37038916 ATTATTATTTAAAAGAGTTTTA
1 ATTATTATTTAAAAGAGTTTTA
37038938 A
1 A
37038939 ATAAAAGATA
Statistics
Matches: 37, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
21 3 0.08
22 14 0.38
23 2 0.05
25 2 0.05
26 13 0.35
27 3 0.08
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (22 bp):
ATTATTATTTAAAAGAGTTTTA
Found at i:37046538 original size:42 final size:42
Alignment explanation
Indices: 37046474--37046650 Score: 212
Period size: 42 Copynumber: 4.2 Consensus size: 42
37046464 CACTTAGCTC
* * * *
37046474 CTAGCAGACTTATTGCCAGTGAAACAATATCTGACTTTACGT
1 CTAGCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGT
* * * *
37046516 CTAGCAGGCTTAATGCCGGTGAAATAATTTCAAACTTTATGT
1 CTAGCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGT
* *
37046558 CTAGTAGGCTTAATGCCGATGAAACAATATCAGACTTTACGT
1 CTAGCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGT
* * * * *
37046600 CTAGCAGGCTTAATGTCGGTGAAAC-ATTTCAGACTATATGG
1 CTAGCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGT
37046641 CTAGCAGGCT
1 CTAGCAGGCT
37046651 AAGTGTTGGT
Statistics
Matches: 114, Mismatches: 21, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
41 22 0.19
42 92 0.81
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (42 bp):
CTAGCAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGT
Found at i:37048004 original size:16 final size:15
Alignment explanation
Indices: 37047983--37048012 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
37047973 ACTGCTTTCA
37047983 ATCTAAATCGTGTTCC
1 ATCTAAATCG-GTTCC
37047999 ATCTAAATCGGTTC
1 ATCTAAATCGGTTC
37048013 AAAAGACGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (15 bp):
ATCTAAATCGGTTCC
Found at i:37053858 original size:37 final size:37
Alignment explanation
Indices: 37053817--37053923 Score: 112
Period size: 37 Copynumber: 2.9 Consensus size: 37
37053807 GTGTGAGACT
37053817 TTAGAGTATCAAACCCCCTAGGACGGTGTGTTTGTCA
1 TTAGAGTATCAAACCCCCTAGGACGGTGTGTTTGTCA
* * * ** *
37053854 TTAGAGTATC-TA-CCTCT-TGATTCTACTGAGTTTGTCA
1 TTAGAGTATCAAACCCCCTAGGA--C-GGTGTGTTTGTCA
37053891 TTAGAGTATCAAACCCCCTAGGACGGTGTGTTT
1 TTAGAGTATCAAACCCCCTAGGACGGTGTGTTT
37053924 TAGTTGACAA
Statistics
Matches: 52, Mismatches: 12, Indels: 12
0.68 0.16 0.16
Matches are distributed among these distances:
34 2 0.04
35 4 0.08
36 2 0.04
37 36 0.69
38 2 0.04
39 4 0.08
40 2 0.04
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (37 bp):
TTAGAGTATCAAACCCCCTAGGACGGTGTGTTTGTCA
Found at i:37060421 original size:13 final size:13
Alignment explanation
Indices: 37060386--37060421 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
37060376 AATATTTTGT
*
37060386 GAAAATTTCATTC
1 GAAAATTTCGTTC
37060399 GAAAATTTCGTTC
1 GAAAATTTCGTTC
37060412 GAAAATTTCG
1 GAAAATTTCG
37060422 ACGTTTGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (13 bp):
GAAAATTTCGTTC
Found at i:37061615 original size:50 final size:50
Alignment explanation
Indices: 37061387--37061625 Score: 228
Period size: 51 Copynumber: 4.7 Consensus size: 50
37061377 AAAGTGATGG
* * *** *
37061387 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAAGTTTGA
* * * * * *
37061437 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTGGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAAG-TTTGA
* * * * * *
37061488 TCACGTGTGTAGTATTATGTGCAGGGTACTACGTGTATCAGATA-TTAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAAGTT--TGA
* * *
37061539 CCACGTGTATAGTACTATGTGCAGGCTACTACGTGAACCGGAAAGTTTGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAAGTTTGA
** *
37061589 TCACGTGTGTAGTAGAATGTGAAGGCTACTACGTGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
37061626 TTGAATGATA
Statistics
Matches: 149, Mismatches: 36, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
49 2 0.01
50 71 0.48
51 74 0.50
52 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAAGTTTGA
Found at i:37061626 original size:101 final size:101
Alignment explanation
Indices: 37061387--37061626 Score: 293
Period size: 101 Copynumber: 2.4 Consensus size: 101
37061377 AAAGTGATGG
* * * * * *
37061387 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGAATGAAAGGCCACATGTATAGTAC
* * *
37061452 TATGTGCAGGCTACTATGCGTACCGGATAGCTTGGA
66 TATGTGCAGGCTACTACGCGAACCGGAAAGCTTGGA
* * * * * *
37061488 TCACGTGTGTAGTATTATGTGCAGGGTACTACGTGTATCAGATATTAATGGCCACGTGTATAGTA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGA-ATGAAAGGCCACATGTATAGTA
* *
37061553 CTATGTGCAGGCTACTACGTGAACCGGAAAG-TTTGA
65 CTATGTGCAGGCTACTACGCGAACCGGAAAGCTTGGA
**
37061589 TCACGTGTGTAGTAGAATGTGAAGGCTACTACGTGTAT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTAT
37061627 TGAATGATAA
Statistics
Matches: 118, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
101 75 0.64
102 43 0.36
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAGAATGAAAGGCCACATGTATAGTAC
TATGTGCAGGCTACTACGCGAACCGGAAAGCTTGGA
Found at i:37068153 original size:45 final size:45
Alignment explanation
Indices: 37068089--37068179 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
37068079 TCATCTTAAA
*
37068089 ATCGAGTACACATAGCAACCTCTATTGGTTCATGTTCCTGGGCAT
1 ATCGAGTACACATAGCAACCTCTATTGGTTCACGTTCCTGGGCAT
37068134 ATCGAGTACACATAGCAACCTCTATTGGTTCACGTTCCTGGGCAT
1 ATCGAGTACACATAGCAACCTCTATTGGTTCACGTTCCTGGGCAT
37068179 A
1 A
37068180 CTTACTAAGT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (45 bp):
ATCGAGTACACATAGCAACCTCTATTGGTTCACGTTCCTGGGCAT
Found at i:37071219 original size:49 final size:50
Alignment explanation
Indices: 37071102--37071282 Score: 148
Period size: 50 Copynumber: 3.5 Consensus size: 50
37071092 GAAATCTCAT
* ** * *
37071102 GTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATAAGAGGTCTCAC
1 GTAAGACCATGTCTGGGACATGGCATGGGC---ACCGA-G--ATGAGAGGTCCCAC
* * *
37071158 GTAAGACCATGTCT-GGACATGGCGTTGGCACCGAGATGAGAGGTCCCCC
1 GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAGGTCCCAC
* * ** * *
37071207 GTAAGACCATGTCTGGGACATGGCATGGGCACTGATATGAGAACTCTCAT
1 GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAGGTCCCAC
* * *
37071257 GTAAGACCATATCTAGGATATGGCAT
1 GTAAGACCATGTCTGGGACATGGCAT
37071283 TTGCAGTACA
Statistics
Matches: 106, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
49 25 0.24
50 49 0.46
51 1 0.01
52 3 0.03
55 14 0.13
56 14 0.13
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (50 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAGGTCCCAC
Found at i:37071261 original size:50 final size:50
Alignment explanation
Indices: 37071096--37071336 Score: 173
Period size: 49 Copynumber: 4.7 Consensus size: 50
37071086 GGGAATGAAA
* * **
37071096 TCTCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATAAGAGG
1 TCTCATGTAAGACCATGTCTGGGACATGGCATTGGC---ACTGA---TATGAGAAC
* * * * **
37071152 TCTCACGTAAGACCATGTCT-GGACATGGCGTTGGCACCGAGATGAGAGG
1 TCTCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGATATGAGAAC
* ** *
37071201 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACTGATATGAGAAC
1 TCTCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGATATGAGAAC
* * * * * * *
37071251 TCTCATGTAAGACCATATCTAGGATATGGCATTTGCAGT-ACAGGA-AAC
1 TCTCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGATATGAGAAC
* * * *
37071299 ATCCCATGTAAGACCATGTCTTGGACATGACTTTGGCA
1 -TCTCATGTAAGACCATGTCTGGGACATGGCATTGGCA
37071337 TGTTATTATC
Statistics
Matches: 151, Mismatches: 32, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
48 3 0.02
49 59 0.39
50 53 0.35
52 3 0.02
55 14 0.09
56 19 0.13
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (50 bp):
TCTCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGATATGAGAAC
Found at i:37077821 original size:12 final size:13
Alignment explanation
Indices: 37077796--37077825 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
37077786 TGGGGTATAA
37077796 TTATTGCATTTAT
1 TTATTGCATTTAT
37077809 TTATTGC-TTTAT
1 TTATTGCATTTAT
37077821 TTATT
1 TTATT
37077826 CATGTATGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.67
Consensus pattern (13 bp):
TTATTGCATTTAT
Found at i:37079768 original size:40 final size:39
Alignment explanation
Indices: 37079640--37079775 Score: 125
Period size: 40 Copynumber: 3.4 Consensus size: 39
37079630 GTTTGGACAA
*
37079640 AAAACGCCGCTAAAAATTGAGTATTAGCGGCGCTTTACAT--
1 AAAACGCCGCTAAAAA-TGAGCATTAGCGGCG-TTT-CATGG
* * *
37079680 AAAACGCCGCTAAAGATCGAGCATCAGCAGCGTTTCCA-GG
1 AAAACGCCGCTAAAAAT-GAGCATTAGCGGCGTTT-CATGG
* * *
37079720 AAAGCGCCGCTAAAAATGAGCATTAGTGGCGTTTCTTGG
1 AAAACGCCGCTAAAAATGAGCATTAGCGGCGTTTCATGG
*
37079759 AAAAACGCCGCAAAAAA
1 -AAAACGCCGCTAAAAA
37079776 CCTAAGCCCA
Statistics
Matches: 78, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
38 1 0.01
39 22 0.28
40 55 0.71
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (39 bp):
AAAACGCCGCTAAAAATGAGCATTAGCGGCGTTTCATGG
Found at i:37079888 original size:41 final size:40
Alignment explanation
Indices: 37079800--37079890 Score: 112
Period size: 41 Copynumber: 2.2 Consensus size: 40
37079790 CATCGCCTTC
*
37079800 AAAAA-CGCCGCTAATGCTCAGGCTTTTAGCGGCGTTTAT
1 AAAAAGCGCCGCTAATGCTCAGGCTTTTAGCGACGTTTAT
* * * *
37079839 AAAGAAGCGTCGCTAATGCTCTGGCTTTTAGCTACGTTTTT
1 AAA-AAGCGCCGCTAATGCTCAGGCTTTTAGCGACGTTTAT
37079880 GAAAAAGCGCC
1 -AAAAAGCGCC
37079891 TCAAAAACAT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
39 3 0.07
40 2 0.05
41 35 0.81
42 3 0.07
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (40 bp):
AAAAAGCGCCGCTAATGCTCAGGCTTTTAGCGACGTTTAT
Found at i:37080177 original size:14 final size:15
Alignment explanation
Indices: 37080147--37080179 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
37080137 AAGGTTTATA
37080147 GATTATAGAATTAGG
1 GATTATAGAATTAGG
*
37080162 GATTATGGAA-TAGG
1 GATTATAGAATTAGG
37080176 GATT
1 GATT
37080180 CTAGTTTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.36, C:0.00, G:0.30, T:0.33
Consensus pattern (15 bp):
GATTATAGAATTAGG
Found at i:37080308 original size:14 final size:14
Alignment explanation
Indices: 37080289--37080362 Score: 87
Period size: 14 Copynumber: 5.3 Consensus size: 14
37080279 TAAATAAGGT
*
37080289 TTAGGGGTTAGTAG
1 TTAGGGGTTAGGAG
*
37080303 TTAGGGGTTAGGGG
1 TTAGGGGTTAGGAG
*
37080317 TTAGGGGTTAGGGG
1 TTAGGGGTTAGGAG
37080331 TTAGGGGTTA-GAGG
1 TTAGGGGTTAGGA-G
* *
37080345 TTAGAGGTTAAGAG
1 TTAGGGGTTAGGAG
37080359 TTAG
1 TTAG
37080363 TGATTTAAGG
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
13 1 0.02
14 51 0.94
15 2 0.04
ACGTcount: A:0.22, C:0.00, G:0.47, T:0.31
Consensus pattern (14 bp):
TTAGGGGTTAGGAG
Found at i:37080312 original size:7 final size:7
Alignment explanation
Indices: 37080289--37080354 Score: 96
Period size: 7 Copynumber: 9.4 Consensus size: 7
37080279 TAAATAAGGT
37080289 TTAGGGG
1 TTAGGGG
**
37080296 TTAGTAG
1 TTAGGGG
37080303 TTAGGGG
1 TTAGGGG
37080310 TTAGGGG
1 TTAGGGG
37080317 TTAGGGG
1 TTAGGGG
37080324 TTAGGGG
1 TTAGGGG
37080331 TTAGGGG
1 TTAGGGG
*
37080338 TTAGAGG
1 TTAGGGG
*
37080345 TTAGAGG
1 TTAGGGG
37080352 TTA
1 TTA
37080355 AGAGTTAGTG
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 54 1.00
ACGTcount: A:0.20, C:0.00, G:0.48, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:37080313 original size:21 final size:21
Alignment explanation
Indices: 37080289--37080363 Score: 89
Period size: 21 Copynumber: 3.6 Consensus size: 21
37080279 TAAATAAGGT
37080289 TTAGGGGTTAGTAGTTAGGGG
1 TTAGGGGTTAGTAGTTAGGGG
**
37080310 TTAGGGGTTAGGGGTTAGGGG
1 TTAGGGGTTAGTAGTTAGGGG
*
37080331 TTAGGGGTTAG-AGGTTAGAGG
1 TTAGGGGTTAGTA-GTTAGGGG
* *
37080352 TTAAGAGTTAGT
1 TTAGGGGTTAGT
37080364 GATTTAAGGT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.21, C:0.00, G:0.47, T:0.32
Consensus pattern (21 bp):
TTAGGGGTTAGTAGTTAGGGG
Found at i:37081872 original size:38 final size:38
Alignment explanation
Indices: 37081792--37081873 Score: 119
Period size: 38 Copynumber: 2.2 Consensus size: 38
37081782 GGTTACAAAC
* * * **
37081792 TTTATCTGTTTTTTATATGTTTATCTCACAAATTTTCT
1 TTTATCTGTTTTTTACATGTTCATCTCACAAAGTTTAG
37081830 TTTATCTGTTTTTTACATGTTCATCTCACAAAGTTTAG
1 TTTATCTGTTTTTTACATGTTCATCTCACAAAGTTTAG
37081868 TTTATC
1 TTTATC
37081874 AATTGTTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (38 bp):
TTTATCTGTTTTTTACATGTTCATCTCACAAAGTTTAG
Found at i:37085196 original size:43 final size:43
Alignment explanation
Indices: 37085120--37085236 Score: 191
Period size: 43 Copynumber: 2.7 Consensus size: 43
37085110 TTTTTGCGAG
* *
37085120 AAGCGTCGCTAAAGGT-TTGTTCTTTAGCGGCGTTTATGATAA
1 AAGCGTCGCTAAAGGTCATGTTCTTTAGCGGCGTTTATGACAA
* *
37085162 AAGCGTCACTAAAGGTCATGTTCTTTAGCGGCGTTTGTGACAA
1 AAGCGTCGCTAAAGGTCATGTTCTTTAGCGGCGTTTATGACAA
37085205 AAGCGTCGCTAAAGGTCATGTTCTTTAGCGGC
1 AAGCGTCGCTAAAGGTCATGTTCTTTAGCGGC
37085237 ATTTTTTCAC
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
42 15 0.22
43 54 0.78
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
AAGCGTCGCTAAAGGTCATGTTCTTTAGCGGCGTTTATGACAA
Found at i:37085582 original size:24 final size:24
Alignment explanation
Indices: 37085544--37085843 Score: 144
Period size: 24 Copynumber: 12.8 Consensus size: 24
37085534 TGAATTGGAT
* *
37085544 AATTTACAAAAAATAATATATAATA
1 AATTTA-AAATAATAATATATGATA
* *
37085569 AATTTGAAATAATAATACAT-ATAA
1 AATTTAAAATAATAATATATGAT-A
*
37085593 AATTT-AAA-AAT--TTTGATGAT-
1 AATTTAAAATAATAATAT-ATGATA
* * * *
37085613 GATTCTAGAATAATCATACATGATA
1 AATT-TAAAATAATAATATATGATA
* * *
37085638 AATCTAAAATAATAGTATATAATA
1 AATTTAAAATAATAATATATGATA
* *
37085662 AATTT-AAA-AATATTA-ACGATA
1 AATTTAAAATAATAATATATGATA
* * *
37085683 AATTTGAAATAA-ATATACAGGATA
1 AATTTAAAATAATA-ATATATGATA
** * *
37085707 AATTTAAAATAATGTTA-ACGATG
1 AATTTAAAATAATAATATATGATA
37085730 AATTTAAAATAATAATAT-TGATA
1 AATTTAAAATAATAATATATGATA
* *
37085753 AA-TTACAAATAATAAAACATGATA
1 AATTTA-AAATAATAATATATGATA
* **
37085777 AATCTAAAATAATAATATACAATA
1 AATTTAAAATAATAATATATGATA
* * * *
37085801 AACTT-AGATAATATTA-ATGATT
1 AATTTAAAATAATAATATATGATA
*
37085823 AATTTAATGATAATAAGTATA
1 AATTTAA-AATAATAA-TATA
37085844 AACATTCAAA
Statistics
Matches: 206, Mismatches: 47, Indels: 43
0.70 0.16 0.15
Matches are distributed among these distances:
20 4 0.02
21 12 0.06
22 27 0.13
23 59 0.29
24 91 0.44
25 12 0.06
26 1 0.00
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.34
Consensus pattern (24 bp):
AATTTAAAATAATAATATATGATA
Found at i:37086634 original size:20 final size:20
Alignment explanation
Indices: 37086607--37086661 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 20
37086597 CTTTTTCCCT
*
37086607 CCCTTTACACTGATTTTTTT
1 CCCTTTACACTGATTTTTTC
* *
37086627 CTCTTTACACTGA-CTTTTC
1 CCCTTTACACTGATTTTTTC
37086646 CCCTTTACACTGATTT
1 CCCTTTACACTGATTT
37086662 CCTCCCTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.16, C:0.29, G:0.05, T:0.49
Consensus pattern (20 bp):
CCCTTTACACTGATTTTTTC
Found at i:37086668 original size:19 final size:20
Alignment explanation
Indices: 37086604--37086670 Score: 75
Period size: 19 Copynumber: 3.5 Consensus size: 20
37086594 TCTCTTTTTC
*
37086604 CCTCCCTTTACACTGATTTT
1 CCTCCCTTTACACTGACTTT
** *
37086624 TTTCTCTTTACACTGACTTT
1 CCTCCCTTTACACTGACTTT
*
37086644 TC-CCCTTTACACTGA-TTT
1 CCTCCCTTTACACTGACTTT
37086662 CCTCCCTTT
1 CCTCCCTTT
37086671 TTTATGAATA
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
18 4 0.10
19 18 0.46
20 17 0.44
ACGTcount: A:0.13, C:0.34, G:0.04, T:0.48
Consensus pattern (20 bp):
CCTCCCTTTACACTGACTTT
Found at i:37087185 original size:44 final size:44
Alignment explanation
Indices: 37087123--37087841 Score: 351
Period size: 44 Copynumber: 16.7 Consensus size: 44
37087113 ACTTGTAGCG
* * *
37087123 ATCTTCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTTTG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCCATCATTTTA
* * *** **
37087167 ATCTGATTCACTGCAACTTCAGAGAGAT-AGATTTTTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCCATCATTTTA
* *** * *
37087210 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGT-TTATTTC
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCCATCAT-TTTA
* * * ***
37087254 GTCTGCTCCACTGCAACTTTAG-GAAGATAAGA-CC-TGA-TGCG
1 ATCTGCTCCACTGCAACTTCAGAG-AGATAAGATCCATCATTTTA
* * * *
37087295 ATCTGCTCTACTACAACTTCGGAGAGATAAGATCCATCACTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCCATCATTTTA
* * * *
37087339 ATCCGCTCCACTGCAACTTCAGAGAGATAGGAT-TAT-TTTATTCA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCCATCATT-TT-A
***
37087383 ATCTGCTCCACTGCAACTTCA-AGGAGATAAGATTGGT--TTATTCA
1 ATCTGCTCCACTGCAACTTCAGA-GAGATAAGATCCATCATT-TT-A
* * * * * *
37087427 GTCTGCTCTACTGCAACTTCAGGGAGATAAGA--C-TGGA-TGTG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCCAT-CATTTTA
* * *
37087468 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTAGCATTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCCATCATTTTA
* * * *** *
37087512 ATCTGCTCCACTGCAACTTCAGGGAGATAGGAT-TATTGGCTTCA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCCA-TCATTTTA
* * * * * *
37087556 ATCTGCTCCGCTGCAACTTTAGGGATATAAGATTCACCATCTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCCATCAT-TTTA
* * * * ***
37087601 GTCTGCCCCACTGCAACTTCAAAGAGATAAGA--C-TGGA-TGCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCCAT-CATTTTA
* * * *
37087642 ATCTGCT-CTCTACAACTTCAGAGAGATAAGATCTAT-GTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCCATCATTTTA
* * ***
37087684 ATCCGCTCCACTGCAACTTCA-AGGAGATAGGATTGGT--TTCTTCA
1 ATCTGCTCCACTGCAACTTCAGA-GAGATAAGATCCATCATT-TT-A
* * * * * *
37087728 ATCTGCTCCACTGCAACTTCAGGGAGATGAGA-CTA-GA-TGTG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCCATCATTTTA
* * ** **
37087769 ATCTGCTCTACTGCAACTTCAGATAGATAAGATCTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCCATCATTTTA
* *
37087813 ATCCGCTCCACTGCAACTTCAGGGAGATA
1 ATCTGCTCCACTGCAACTTCAGAGAGATA
37087842 GGATTGGTTT
Statistics
Matches: 510, Mismatches: 127, Indels: 76
0.72 0.18 0.11
Matches are distributed among these distances:
40 21 0.04
41 91 0.18
42 19 0.04
43 75 0.15
44 274 0.54
45 30 0.06
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCCATCATTTTA
Found at i:37087458 original size:173 final size:173
Alignment explanation
Indices: 37087078--37087755 Score: 861
Period size: 173 Copynumber: 3.9 Consensus size: 173
37087068 ATTTGCTATC
* * * * *
37087078 TTCAGTCTGCTCCACTACAACTTCAGCGAGATAAGACTTG-TAGCGATCTTCTCTACTGCAACTT
1 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGAT-GCGATCTGCTCTACTACAACTT
* * * *
37087142 CAGAGAGATAAGATCCATCATTTTGATCTGATTCACTGCAACTTCAGAGAGATA-GATT-TTTGG
65 CAGAGAGATAAGATCCATCATTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTATTT--
*
37087205 T-TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTA
128 TCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTA
* *
37087250 TTTC-GTCTGCTCCACTGCAACTTTAGGAAGATAAGACCT-GATGCGATCTGCTCTACTACAACT
1 -TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTGGATGCGATCTGCTCTACTACAACT
* *
37087313 TCGGAGAGATAAGATCCATCACTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTATTTT
64 TCAGAGAGATAAGATCCATCATTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTATTTT
* *
37087378 ATTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTGGTTTA
129 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTA
* * *
37087423 TTCAGTCTGCTCTACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTC
1 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTACAACTTC
* * * * **
37087488 AGAGAGATAAGATCTAGCATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCT
66 AGAGAGATAAGATCCATCATTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTATTTTCT
* * * **** *
37087553 TCAATCTGCTCCGCTGCAACTTTAGGGATATAAGATTCACCATC
131 TCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GGTTTA
* * **
37087597 TTTAGTCTGCCCCACTGCAACTTCAAAGAGATAAGACTGGATGCGATCTGCTCT-CTACAACTTC
1 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTACAACTTC
* * **
37087661 AGAGAGATAAGATCTAT-GTTTTAATCCGCTCCACTGCAACTTCA-AGGAGATAGGATTGGTTTC
66 AGAGAGATAAGATCCATCATTTTAATCCGCTCCACTGCAACTTCAGA-GAGATAGGATTATTTTC
37087724 TTCAATCTGCTCCACTGCAACTTCAGGGAGAT
130 TTCAATCTGCTCCACTGCAACTTCAGGGAGAT
37087756 GAGACTAGAT
Statistics
Matches: 441, Mismatches: 55, Indels: 19
0.86 0.11 0.04
Matches are distributed among these distances:
172 170 0.39
173 219 0.50
174 52 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (173 bp):
TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTACAACTTC
AGAGAGATAAGATCCATCATTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTATTTTCT
TCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTA
Found at i:37087846 original size:129 final size:129
Alignment explanation
Indices: 37087076--37087861 Score: 520
Period size: 129 Copynumber: 6.1 Consensus size: 129
37087066 AAATTTGCTA
* * * * * * *
37087076 TCTTCAGTCTGCTCCACTACAACTTCAGCGAGATAAGACTTG-TAGCGATCTTCTCTACTGCAAC
1 TCTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGACTAGAT-GTGATCTGCTCCACTGCAAC
** ** * * * *
37087140 TTCAGAGAGATAAGATCCATCATTTTGATCTGATTCACTGCAACTTCAGAGAGAT-AGATTTTTG
65 TTCAGAGAGATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA---TTG
37087204 G-T
127 GTT
* * * *
37087206 T-TT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTATTTCG-TCTGCTCCACTGC
1 TCTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGACTAG---ATGT-GATCTGCTCCACTGC
* * * *
37087268 AACTTTAG-GAAGATAAGACCTGATGCG-----ATCTGCTCTACTACAACTTC-GGAGAGATAAG
62 AACTTCAGAG-AGATAAGATCTG-TG-GTTTTAATCTGCTCCACTGCAACTTCAGG-GAGATAAG
*** *
37087326 ATCCATC
123 ATTGGTT
* * * * * * *
37087333 ACTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTATTTTAT-TCAATCTGCTCCACTGC
1 TCTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGACTA---GATGT-GATCTGCTCCACTGC
* * *
37087397 AACTTCA-AGGAGATAAGAT-TG-GTTTATTCAGTCTGCTCTACTGCAACTTCAGGGAGATAAGA
62 AACTTCAGA-GAGATAAGATCTGTGGTT-TT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGA
* *
37087459 CTGG-A
124 TTGGTT
* * * * *
37087464 T-GT-GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTAGCATTTTAATCTGCTCCACTGCA
1 TCTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGA-CTAG-A-TGTGATCTGCTCCACTGCA
* * * * * * * *
37087527 ACTTCAGGGAGATAGGAT-TATTGGCTTCAATCTGCTCCGCTGCAACTTTAGGGATATAAGATTC
63 ACTTCAGAGAGATAAGATCT-GTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-
****
37087591 ACCA
126 GGTT
* * * * * * * *
37087595 TCTTTAGTCTGCCCCACTGCAACTTCAAAGAGATAAGACTGGATGCGATCTGCT-CTCTACAACT
1 TCTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGACTAGATGTGATCTGCTCCACTGCAACT
* * * *
37087659 TCAGAGAGATAAGATCTAT-GTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATTGGTT
66 TCAGAGAGATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTT
* * *
37087722 TCTTCAATCTGCTCCACTGCAACTTCAGGGAGATGAGACTAGATGTGATCTGCTCTACTGCAACT
1 TCTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGACTAGATGTGATCTGCTCCACTGCAACT
* * *
37087787 TCAGATAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTT
66 TCAGAGAGATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTT
*
37087851 TCTTCGATCTG
1 TCTTCAATCTG
37087862 TTCTCTGGGG
Statistics
Matches: 510, Mismatches: 105, Indels: 83
0.73 0.15 0.12
Matches are distributed among these distances:
126 2 0.00
127 47 0.09
128 116 0.23
129 232 0.45
130 17 0.03
131 32 0.06
132 34 0.07
133 30 0.06
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (129 bp):
TCTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGACTAGATGTGATCTGCTCCACTGCAACT
TCAGAGAGATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTT
Found at i:37093600 original size:12 final size:12
Alignment explanation
Indices: 37093583--37093608 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37093573 AATGAATTGA
37093583 AATAAATCATTT
1 AATAAATCATTT
37093595 AATAAATCATTT
1 AATAAATCATTT
37093607 AA
1 AA
37093609 AACAACTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (12 bp):
AATAAATCATTT
Found at i:37093886 original size:24 final size:24
Alignment explanation
Indices: 37093848--37094147 Score: 135
Period size: 24 Copynumber: 12.8 Consensus size: 24
37093838 TGAATTGGAT
* *
37093848 AATTTACAATAAATAATATATAATA
1 AATTTAAAAT-AATAATATATGATA
* *
37093873 AATTTGAAATAATAATACAT-ATAA
1 AATTTAAAATAATAATATATGAT-A
*
37093897 AATTT-AAA-AAT--TTTGATGAT-
1 AATTTAAAATAATAATAT-ATGATA
* * * *
37093917 GATTCTAGAATAATCATACATGATA
1 AATT-TAAAATAATAATATATGATA
** * * *
37093942 AATCCAAAATGATAGTATATAATA
1 AATTTAAAATAATAATATATGATA
*
37093966 AATTT-AAA-AATATTA-ATGATA
1 AATTTAAAATAATAATATATGATA
* * *
37093987 AATTTGAAATAA-ATATACAGGATA
1 AATTTAAAATAATA-ATATATGATA
** * *
37094011 AATTTAAAATAATGTTA-ACGATG
1 AATTTAAAATAATAATATATGATA
37094034 AATTTAAAATAATAATAT-TGATA
1 AATTTAAAATAATAATATATGATA
* *
37094057 AA-TTACAAATAATAAAACATGATA
1 AATTTA-AAATAATAATATATGATA
* **
37094081 AATCTAAAATAATAATATACAATA
1 AATTTAAAATAATAATATATGATA
* * * *
37094105 AACTT-AGATAATATTA-ATGATT
1 AATTTAAAATAATAATATATGATA
*
37094127 AATTTAATGATAATAAGTATA
1 AATTTAA-AATAATAA-TATA
37094148 AACATTCAAA
Statistics
Matches: 203, Mismatches: 50, Indels: 43
0.69 0.17 0.15
Matches are distributed among these distances:
20 4 0.02
21 13 0.06
22 26 0.13
23 59 0.29
24 85 0.42
25 15 0.07
26 1 0.00
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.34
Consensus pattern (24 bp):
AATTTAAAATAATAATATATGATA
Found at i:37094116 original size:70 final size:69
Alignment explanation
Indices: 37093925--37094130 Score: 182
Period size: 70 Copynumber: 3.0 Consensus size: 69
37093915 ATGATTCTAG
* * * * * * *
37093925 AATAATCATACATGATAAATCCAAAATGATAGTATATAATAAATTTAAAAATATTAATGATAAAT
1 AATAATAATACATGATAAATCTAAAATAATAATATACAATAAATTTAATAATAATAATGATAAAT
**
37093990 TTGA
66 TACA
* * ** * * *
37093994 AATAA-ATATACAGGATAAATTTAAAATAATGTTA-ACGATGAATTTAAAATAATAATATTGATA
1 AATAATA-ATACATGATAAATCTAAAATAATAATATACAATAAATTT--AATAATAATAATGATA
37094057 AATTACA
63 AATTACA
* * * *
37094064 AATAATAAAACATGATAAATCTAAAATAATAATATACAATAAACTTAGATAATATTAATGATTAA
1 AATAATAATACATGATAAATCTAAAATAATAATATACAATAAATTTA-ATAATAATAATGATAAA
37094129 TT
65 TT
37094131 TAATGATAAT
Statistics
Matches: 105, Mismatches: 26, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
68 8 0.08
69 27 0.26
70 61 0.58
71 9 0.09
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (69 bp):
AATAATAATACATGATAAATCTAAAATAATAATATACAATAAATTTAATAATAATAATGATAAAT
TACA
Found at i:37094968 original size:19 final size:20
Alignment explanation
Indices: 37094901--37094970 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 20
37094891 TTTGATTTTT
*
37094901 TTTCCTCCCTTTACACTGAT
1 TTTCCTCCCTTTACACTGAC
** ** *
37094921 TTTTTTCTTTTTACACTAAC
1 TTTCCTCCCTTTACACTGAC
*
37094941 TTTTC-CCCTTTACACTGA-
1 TTTCCTCCCTTTACACTGAC
37094959 TTTCCTCCCTTT
1 TTTCCTCCCTTT
37094971 TTTATGAATA
Statistics
Matches: 38, Mismatches: 11, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
18 4 0.11
19 16 0.42
20 18 0.47
ACGTcount: A:0.14, C:0.31, G:0.03, T:0.51
Consensus pattern (20 bp):
TTTCCTCCCTTTACACTGAC
Found at i:37103698 original size:9 final size:9
Alignment explanation
Indices: 37103684--37103729 Score: 83
Period size: 9 Copynumber: 5.1 Consensus size: 9
37103674 TATAGTTTGA
37103684 TATTCGAAT
1 TATTCGAAT
37103693 TATTCGAAT
1 TATTCGAAT
37103702 TATTCGAAT
1 TATTCGAAT
*
37103711 TATTCGAGT
1 TATTCGAAT
37103720 TATTCGAAT
1 TATTCGAAT
37103729 T
1 T
37103730 CTAAAACTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:37119823 original size:35 final size:35
Alignment explanation
Indices: 37119745--37119824 Score: 88
Period size: 35 Copynumber: 2.3 Consensus size: 35
37119735 GTTATAGTTG
* ** *
37119745 CCCTGAAGAACCTATATATCATTTACACGGTGTCA
1 CCCTGAAGGACCTATATATCATCCACACGATGTCA
* * *
37119780 CCCCGAAGGACCTGTATATCATCCACATGATGTCA
1 CCCTGAAGGACCTATATATCATCCACACGATGTCA
*
37119815 CCTTGAAGGA
1 CCCTGAAGGA
37119825 ATAGTAGATA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (35 bp):
CCCTGAAGGACCTATATATCATCCACACGATGTCA
Found at i:37120101 original size:6 final size:6
Alignment explanation
Indices: 37120090--37120133 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
37120080 GCATCGATGT
37120090 AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA AA
1 AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA AA
37120134 GGTTTCGACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (6 bp):
AAAGGA
Found at i:37121133 original size:16 final size:17
Alignment explanation
Indices: 37121100--37121134 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
37121090 AAAGTATAGG
37121100 GGCAAAATAATAATTTT
1 GGCAAAATAATAATTTT
*
37121117 GGCAAAAT-ATGATTTT
1 GGCAAAATAATAATTTT
37121133 GG
1 GG
37121135 GTTAAATTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.40, C:0.06, G:0.20, T:0.34
Consensus pattern (17 bp):
GGCAAAATAATAATTTT
Found at i:37121548 original size:25 final size:24
Alignment explanation
Indices: 37121514--37121596 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 24
37121504 TAGCTACGTT
*
37121514 CCGACCTACAGTGCGTTAGAGCATA
1 CCGATCTACAGT-CGTTAGAGCATA
37121539 CCGATCTACAGTTCGTGT-GAGCATA
1 CCGATCTACAG-TCGT-TAGAGCATA
* * * *
37121564 CCAATTTATAGCTCGTGAGAGCATA
1 CCGATCTACAG-TCGTTAGAGCATA
37121589 CCGATCTA
1 CCGATCTA
37121597 TAGCTCGAGT
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
25 45 0.96
26 2 0.04
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (24 bp):
CCGATCTACAGTCGTTAGAGCATA
Found at i:37121609 original size:50 final size:50
Alignment explanation
Indices: 37121531--37121794 Score: 166
Period size: 50 Copynumber: 5.2 Consensus size: 50
37121521 ACAGTGCGTT
* * *
37121531 AGAGCATACCGATCTACAGTTCGTGTGAGCATACCAATTTATAGCTCGTG
1 AGAGCATACCGATCTACAGCTCGAGTGAGCATACCAATTTACAGCTCGTG
* * * * *
37121581 AGAGCATACCGATCTATAGCTCGAGTGAGAAAACCGATTCACAGCTCGT-
1 AGAGCATACCGATCTACAGCTCGAGTGAGCATACCAATTTACAGCTCGTG
* * * * *
37121630 ATGAGCATA-C-ATGTACAGGATTTGA-T-AG-ATTACAGTTATATGAGTTAGAG-TGCGTG
1 A-GAGCATACCGATCTACA-G-CTCGAGTGAGCA-TAC---CA-AT---TTACAGCT-CGTG
* *
37121686 AGAGCATACTGATCTACAGCTCGTGTGAGCATACCAATTTACAGCTCGTG
1 AGAGCATACCGATCTACAGCTCGAGTGAGCATACCAATTTACAGCTCGTG
* * * * * *
37121736 AGAGCATATCGATCTATAGCTCGAGTGAGAAAACCGATTCACAGCTCGT-
1 AGAGCATACCGATCTACAGCTCGAGTGAGCATACCAATTTACAGCTCGTG
37121785 ATGAGCATAC
1 A-GAGCATAC
37121795 ATGTACAGGA
Statistics
Matches: 161, Mismatches: 33, Indels: 40
0.69 0.14 0.17
Matches are distributed among these distances:
47 1 0.01
48 9 0.06
49 5 0.03
50 108 0.67
51 1 0.01
52 2 0.01
53 2 0.01
54 2 0.01
55 16 0.10
56 3 0.02
57 11 0.07
58 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (50 bp):
AGAGCATACCGATCTACAGCTCGAGTGAGCATACCAATTTACAGCTCGTG
Found at i:37121616 original size:25 final size:25
Alignment explanation
Indices: 37121532--37121639 Score: 110
Period size: 25 Copynumber: 4.3 Consensus size: 25
37121522 CAGTGCGTTA
* *
37121532 GAGCATACCGATCTACAGTTCGTGT
1 GAGCATACCGATCTATAGCTCGTGT
* * *
37121557 GAGCATACCAATTTATAGCTCGTGA
1 GAGCATACCGATCTATAGCTCGTGT
*
37121582 GAGCATACCGATCTATAGCTCGAGT
1 GAGCATACCGATCTATAGCTCGTGT
* * * *
37121607 GAGAAAACCGAT-TCACAGCTCGTAT
1 GAGCATACCGATCT-ATAGCTCGTGT
37121632 GAGCATAC
1 GAGCATAC
37121640 ATGTACAGGA
Statistics
Matches: 66, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
24 1 0.02
25 65 0.98
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (25 bp):
GAGCATACCGATCTATAGCTCGTGT
Found at i:37121716 original size:25 final size:25
Alignment explanation
Indices: 37121682--37121794 Score: 111
Period size: 25 Copynumber: 4.5 Consensus size: 25
37121672 AGTTAGAGTG
* *
37121682 CGTGAGAGCATACTGATCTACAGCT
1 CGTGTGAGCATACCGATCTACAGCT
* *
37121707 CGTGTGAGCATACCAATTTACAGCT
1 CGTGTGAGCATACCGATCTACAGCT
* * *
37121732 CGTGAGAGCATATCGATCTATAGCT
1 CGTGTGAGCATACCGATCTACAGCT
* * *
37121757 CGAGTGAGAAAACCGAT-TCACAGCT
1 CGTGTGAGCATACCGATCT-ACAGCT
*
37121782 CGTATGAGCATAC
1 CGTGTGAGCATAC
37121795 ATGTACAGGA
Statistics
Matches: 68, Mismatches: 19, Indels: 2
0.76 0.21 0.02
Matches are distributed among these distances:
24 1 0.01
25 67 0.99
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (25 bp):
CGTGTGAGCATACCGATCTACAGCT
Found at i:37121805 original size:155 final size:155
Alignment explanation
Indices: 37121523--37121832 Score: 575
Period size: 155 Copynumber: 2.0 Consensus size: 155
37121513 TCCGACCTAC
* * *
37121523 AGTGCGTTAGAGCATACCGATCTACAGTTCGTGTGAGCATACCAATTTATAGCTCGTGAGAGCAT
1 AGTGCGTGAGAGCATACCGATCTACAGCTCGTGTGAGCATACCAATTTACAGCTCGTGAGAGCAT
37121588 ACCGATCTATAGCTCGAGTGAGAAAACCGATTCACAGCTCGTATGAGCATACATGTACAGGATTT
66 ACCGATCTATAGCTCGAGTGAGAAAACCGATTCACAGCTCGTATGAGCATACATGTACAGGATTT
37121653 GATAGATTACAGTTATATGAGTTAG
131 GATAGATTACAGTTATATGAGTTAG
*
37121678 AGTGCGTGAGAGCATACTGATCTACAGCTCGTGTGAGCATACCAATTTACAGCTCGTGAGAGCAT
1 AGTGCGTGAGAGCATACCGATCTACAGCTCGTGTGAGCATACCAATTTACAGCTCGTGAGAGCAT
*
37121743 ATCGATCTATAGCTCGAGTGAGAAAACCGATTCACAGCTCGTATGAGCATACATGTACAGGATTT
66 ACCGATCTATAGCTCGAGTGAGAAAACCGATTCACAGCTCGTATGAGCATACATGTACAGGATTT
37121808 GATAGATTACAGTTATATGAGTTAG
131 GATAGATTACAGTTATATGAGTTAG
37121833 CACACAATGT
Statistics
Matches: 150, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
155 150 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (155 bp):
AGTGCGTGAGAGCATACCGATCTACAGCTCGTGTGAGCATACCAATTTACAGCTCGTGAGAGCAT
ACCGATCTATAGCTCGAGTGAGAAAACCGATTCACAGCTCGTATGAGCATACATGTACAGGATTT
GATAGATTACAGTTATATGAGTTAG
Found at i:37124988 original size:101 final size:101
Alignment explanation
Indices: 37124861--37125146 Score: 466
Period size: 101 Copynumber: 2.8 Consensus size: 101
37124851 AAAGTGATGG
*
37124861 TCACATGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATCTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATCTGTAGTAC
*
37124926 TATGTGCAGGCTACTATGCAACCCGGATAGCTTCAA
66 TATGTGCAGGCTACTATGCAACCCGGATAACTTCAA
* *
37124962 TCACGTGTGTAGTACTATGTGTAGGCTATTACATGTACCAGAATGATAGGTCGCATCTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATCTGTAGTAC
*
37125027 TATGTGCAAGCTACTATGCAACCCGGATAACTTCAA
66 TATGTGCAGGCTACTATGCAACCCGGATAACTTCAA
* * * *
37125063 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGGATAGTGAT-GGTCACATGTGTAGT
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGA-A-TGATAGGTCGCATCTGTAGT
37125127 ACTATGTGCAGGCTACTATG
64 ACTATGTGCAGGCTACTATG
37125147 TGAACCGGTA
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
101 134 0.78
102 33 0.19
103 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATCTGTAGTAC
TATGTGCAGGCTACTATGCAACCCGGATAACTTCAA
Found at i:37125105 original size:51 final size:48
Alignment explanation
Indices: 37124861--37125144 Score: 180
Period size: 51 Copynumber: 5.6 Consensus size: 48
37124851 AAAGTGATGG
* * *
37124861 TCACATGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGG
1 TCACATGTGTAGTACTATGTGTAGGCTACTAC-TGTACC-GGATAATAGA
* * * * *
37124911 TCGCATCTGTAGTACTATGTGCAGGCTACTA-TGCAACCCGGATAGCTTCA-A
1 TCACATGTGTAGTACTATGTGTAGGCTACTACTG-TA-CCGGATA--AT-AGA
* * * * *
37124962 TCACGTGTGTAGTACTATGTGTAGGCTATTACATGTACCAGAATGATAGG
1 TCACATGTGTAGTACTATGTGTAGGCTACTAC-TGTACC-GGATAATAGA
* * * * *
37125012 TCGCATCTGTAGTACTATGTGCAAGCTACTA-TGCAACCCGGATAACTTCA-A
1 TCACATGTGTAGTACTATGTGTAGGCTACTACTG-TA-CCGGATAA--T-AGA
* * * *
37125063 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGGATAGTGATGG
1 TCACATGTGTAGTACTATGTGTAGGCTACTAC-TGTACCGGATAAT-A-GA
*
37125114 TCACATGTGTAGTACTATGTGCAGGCTACTA
1 TCACATGTGTAGTACTATGTGTAGGCTACTA
37125145 TGTGAACCGG
Statistics
Matches: 176, Mismatches: 40, Indels: 35
0.70 0.16 0.14
Matches are distributed among these distances:
48 4 0.02
49 12 0.07
50 58 0.33
51 91 0.52
52 7 0.04
53 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.30
Consensus pattern (48 bp):
TCACATGTGTAGTACTATGTGTAGGCTACTACTGTACCGGATAATAGA
Found at i:37125223 original size:46 final size:43
Alignment explanation
Indices: 37125150--37125248 Score: 117
Period size: 46 Copynumber: 2.2 Consensus size: 43
37125140 TACTATGTGA
*
37125150 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCTGAACCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAACCC
* * * *
37125193 ACCGGATATCATTGATTACAAAGGGTGGTTGTTGTGTGCTGAATCC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGCTATGTGCTGAACCC
37125239 ACCGTGTATC
1 ACCG-GTATC
37125249 TGTTATTATT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
43 5 0.11
44 11 0.23
45 2 0.04
46 28 0.60
47 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAACCC
Found at i:37125393 original size:16 final size:16
Alignment explanation
Indices: 37125372--37125403 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37125362 TGATTGAAAG
*
37125372 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
37125388 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
37125404 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:37133166 original size:17 final size:17
Alignment explanation
Indices: 37133144--37133176 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37133134 TGGTTGTCGC
37133144 TAGAATTAAATTAATTA
1 TAGAATTAAATTAATTA
*
37133161 TAGAATTAATTTAATT
1 TAGAATTAAATTAATT
37133177 GGGTTATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (17 bp):
TAGAATTAAATTAATTA
Found at i:37134377 original size:25 final size:25
Alignment explanation
Indices: 37134345--37134463 Score: 134
Period size: 25 Copynumber: 4.8 Consensus size: 25
37134335 GTTCCGACTC
37134345 ACAGCTCGTGTGAGCATACTGATCT
1 ACAGCTCGTGTGAGCATACTGATCT
** *
37134370 ACAGCTCGTGTGAGCATACCAATTT
1 ACAGCTCGTGTGAGCATACTGATCT
*
37134395 ACAGCTCGTGAGAGCATACCT-ATCT
1 ACAGCTCGTGTGAGCATA-CTGATCT
* * *
37134420 ACAGCTCGAGTGGGCATATTGAT-T
1 ACAGCTCGTGTGAGCATACTGATCT
*
37134444 CACAGCTCGTATGAGCATAC
1 -ACAGCTCGTGTGAGCATAC
37134464 ATGTACAGGA
Statistics
Matches: 77, Mismatches: 14, Indels: 6
0.79 0.14 0.06
Matches are distributed among these distances:
24 2 0.03
25 74 0.96
26 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
ACAGCTCGTGTGAGCATACTGATCT
Found at i:37134420 original size:50 final size:51
Alignment explanation
Indices: 37134343--37134463 Score: 149
Period size: 50 Copynumber: 2.4 Consensus size: 51
37134333 ACGTTCCGAC
* *
37134343 TCACAGCTCGTGTGAGCATA-CTGATCTACAGCTCGTGTGAGCATACCAAT
1 TCACAGCTCGTGAGAGCATACCTGATCTACAGCTCGAGTGAGCATACCAAT
* * ***
37134393 TTACAGCTCGTGAGAGCATACCT-ATCTACAGCTCGAGTGGGCATATTGAT
1 TCACAGCTCGTGAGAGCATACCTGATCTACAGCTCGAGTGAGCATACCAAT
37134443 TCACAGCTCGT-ATGAGCATAC
1 TCACAGCTCGTGA-GAGCATAC
37134464 ATGTACAGGA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.02
50 58 0.95
51 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (51 bp):
TCACAGCTCGTGAGAGCATACCTGATCTACAGCTCGAGTGAGCATACCAAT
Found at i:37136637 original size:25 final size:24
Alignment explanation
Indices: 37136593--37136642 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 24
37136583 AAGCTTTTTT
37136593 TATTTTTTTGATTTCTTCTG-CTG
1 TATTTTTTTGATTTCTTCTGTCTG
37136616 TATTTTTTTGTAATTT-TCTCTGTCTG
1 TATTTTTTTG--ATTTCT-TCTGTCTG
37136642 T
1 T
37136643 CTGTAAAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
23 10 0.43
24 1 0.04
25 8 0.35
26 4 0.17
ACGTcount: A:0.10, C:0.12, G:0.12, T:0.66
Consensus pattern (24 bp):
TATTTTTTTGATTTCTTCTGTCTG
Found at i:37137433 original size:50 final size:50
Alignment explanation
Indices: 37137373--37137520 Score: 154
Period size: 50 Copynumber: 3.0 Consensus size: 50
37137363 GTGATGTCGA
* * *
37137373 GGAAGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCACTACACCGCCCG
1 GGAAGCAAGATTCACTGTTGTAGCTTTAATCTGTTCCACTGCAACGCCCG
* ** * ** * * *
37137423 GGAAGTAAGATTGGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGG
1 GGAAGCAAGATTCACTGTTGTAGCTTTAATCTGTTCCACTGCAACGCCCG
* *
37137473 GGAAGCAAGATTCACCT-TTGTGGCTTTAATCTGTTCCACTGCATCGCC
1 GGAAGCAAGATTCA-CTGTTGTAGCTTTAATCTGTTCCACTGCAACGCC
37137521 TGGGGAGTAA
Statistics
Matches: 75, Mismatches: 22, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
50 73 0.97
51 2 0.03
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (50 bp):
GGAAGCAAGATTCACTGTTGTAGCTTTAATCTGTTCCACTGCAACGCCCG
Found at i:37137480 original size:100 final size:100
Alignment explanation
Indices: 37137346--37137532 Score: 268
Period size: 100 Copynumber: 1.9 Consensus size: 100
37137336 TAACTCGTAA
**
37137346 CTTTAATCTGTTTAACTGTGATGTCGAGGAAGCAAGATTCA-CTGTTGTAGCTTCAATCTGTTCC
1 CTTTAATCTGTTTAACTGCAATGTCGAGGAAGCAAGATTCACCT-TTGTAGCTTCAATCTGTTCC
37137410 ACTACACCGCCCGGGAAGTAAGATTGGCTGTTGTAG
65 ACTACACCGCCCGGGAAGTAAGATTGGCTGTTGTAG
* * * *
37137446 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCTTTGTGGCTTTAATCTGTTCCA
1 CTTTAATCTGTTTAACTGCAATGTCGAGGAAGCAAGATTCACCTTTGTAGCTTCAATCTGTTCCA
* * * *
37137511 CTGCATCGCCTGGGGAGTAAGA
66 CTACACCGCCCGGGAAGTAAGA
37137533 ATTGCTATTC
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
100 74 0.97
101 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (100 bp):
CTTTAATCTGTTTAACTGCAATGTCGAGGAAGCAAGATTCACCTTTGTAGCTTCAATCTGTTCCA
CTACACCGCCCGGGAAGTAAGATTGGCTGTTGTAG
Found at i:37137577 original size:45 final size:44
Alignment explanation
Indices: 37137522--37137666 Score: 127
Period size: 45 Copynumber: 3.2 Consensus size: 44
37137512 TGCATCGCCT
* *
37137522 GGGGAGTAAGAATTGCTATTCTCAGTCTGGC-CCACTGGAACTTCAG
1 GGGGA-TAAGAATTG-TATTCTCAGTCT-GCTCCACTGCAACCTCAG
* * *
37137568 GGGGATAAGACTTGTCTTCTCTGTCTGCTCCACTGCAACCTCAG
1 GGGGATAAGAATTGTATTCTCAGTCTGCTCCACTGCAACCTCAG
* * *
37137612 GGAGATAAG-ATT-TATCATCTTC-GATCTACCCCACTGCAACCTCAG
1 GGGGATAAGAATTGTAT--TC-TCAG-TCTGCTCCACTGCAACCTCAG
37137657 GGGGATAAGA
1 GGGGATAAGA
37137667 CCTGCTATTT
Statistics
Matches: 82, Mismatches: 11, Indels: 12
0.78 0.10 0.11
Matches are distributed among these distances:
42 2 0.02
43 4 0.05
44 34 0.41
45 37 0.45
46 5 0.06
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (44 bp):
GGGGATAAGAATTGTATTCTCAGTCTGCTCCACTGCAACCTCAG
Found at i:37137601 original size:44 final size:43
Alignment explanation
Indices: 37137522--37137667 Score: 132
Period size: 44 Copynumber: 3.3 Consensus size: 43
37137512 TGCATCGCCT
* * * * *
37137522 GGGGAGTAAGAATTGCTATTCTCAGTCTGGCCCACTGGAACTTCAG
1 GGGGA-TAAGACTTG-TCTTCTCTGTCT-GCCCACTGCAACCTCAG
37137568 GGGGATAAGACTTGTCTTCTCTGTCTGCTCCACTGCAACCTCAG
1 GGGGATAAGACTTGTCTTCTCTGTCTGC-CCACTGCAACCTCAG
* * * * *
37137612 GGAGATAAGATTTATCATCT-TCGATCTACCCCACTGCAACCTCAG
1 GGGGATAAGACTTGTCTTCTCT-G-TCT-GCCCACTGCAACCTCAG
37137657 GGGGATAAGAC
1 GGGGATAAGAC
37137668 CTGCTATTTT
Statistics
Matches: 84, Mismatches: 12, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
43 3 0.04
44 40 0.48
45 35 0.42
46 6 0.07
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (43 bp):
GGGGATAAGACTTGTCTTCTCTGTCTGCCCACTGCAACCTCAG
Found at i:37137691 original size:45 final size:45
Alignment explanation
Indices: 37137595--37137693 Score: 110
Period size: 45 Copynumber: 2.2 Consensus size: 45
37137585 TCTCTGTCTG
* * * *
37137595 CTCCACTGCAACCTCAGGGAGATAAGATTTATCATCTTCGATCTA
1 CTCCACTGCAACCTCAGGGAGATAAGACTGATCATCTTCAACCTA
* * * *
37137640 CCCCACTGCAACCTCAGGGGGATAAGACCTGCT-ATTTTCAACCTA
1 CTCCACTGCAACCTCAGGGAGATAAGA-CTGATCATCTTCAACCTA
37137685 CTCCACTGC
1 CTCCACTGC
37137694 TGCTCAAGGA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
45 42 0.95
46 2 0.05
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (45 bp):
CTCCACTGCAACCTCAGGGAGATAAGACTGATCATCTTCAACCTA
Found at i:37137861 original size:44 final size:44
Alignment explanation
Indices: 37137724--37137862 Score: 142
Period size: 44 Copynumber: 3.2 Consensus size: 44
37137714 GGTGGCTTAA
37137724 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTG
* * * * * * **
37137768 ATATGC-T-CCACTACTGCTTAGGGAA-ACAAGGTTCGGT-GGCTTAA
1 ATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGATT-TGTCGTCTTTG
37137812 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTG
37137856 ATCTGCT
1 ATCTGCT
37137863 CCACTACTGC
Statistics
Matches: 71, Mismatches: 16, Indels: 16
0.69 0.16 0.16
Matches are distributed among these distances:
42 6 0.08
43 8 0.11
44 43 0.61
45 8 0.11
46 6 0.08
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (44 bp):
ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTG
Found at i:37137874 original size:88 final size:88
Alignment explanation
Indices: 37137685--37137879 Score: 329
Period size: 88 Copynumber: 2.2 Consensus size: 88
37137675 TTTCAACCTA
* * * *
37137685 CTCCACTGCTGCTCAAGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
1 CTCCACTACTGCTTAGGGAAACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
37137750 TAAGATTTGTCGTCTTTGATATG
66 TAAGATTTGTCGTCTTTGATATG
37137773 CTCCACTACTGCTTAGGGAAACAAGG-TTCGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAG
1 CTCCACTACTGCTTAGGGAAACAAGGCTT-GGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAG
*
37137837 ATAAGATTTGTCGTCTTTGATCTG
65 ATAAGATTTGTCGTCTTTGATATG
37137861 CTCCACTACTGCTTAGGGA
1 CTCCACTACTGCTTAGGGA
37137880 GATAAGATCT
Statistics
Matches: 101, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
87 2 0.02
88 99 0.98
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.32
Consensus pattern (88 bp):
CTCCACTACTGCTTAGGGAAACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
TAAGATTTGTCGTCTTTGATATG
Found at i:37137883 original size:44 final size:44
Alignment explanation
Indices: 37137747--37137887 Score: 137
Period size: 44 Copynumber: 3.2 Consensus size: 44
37137737 TATCTTGGAA
*
37137747 AGATAAGATTTGTCGTCTTTGATATGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAGGG
* * * * * ** *
37137791 AAACAAGGTTCGGT-GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATT-TGTCGTCTTTGATCTGC-T-CCACTACTGCTTAGG-G
37137835 AGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAGGG
37137879 AGATAAGAT
1 AGATAAGAT
37137888 CTACAATCTT
Statistics
Matches: 72, Mismatches: 17, Indels: 16
0.69 0.16 0.15
Matches are distributed among these distances:
42 6 0.08
43 6 0.08
44 48 0.67
45 6 0.08
46 6 0.08
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (44 bp):
AGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAGGG
Found at i:37137932 original size:132 final size:132
Alignment explanation
Indices: 37137787--37138031 Score: 436
Period size: 132 Copynumber: 1.9 Consensus size: 132
37137777 ACTACTGCTT
*
37137787 AGGGAAACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTC
1 AGGGAAACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTC
* *
37137852 TTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCTGCTGCTAC
66 TTCGATATGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCTGCTGCTAC
37137917 TC
131 TC
*
37137919 AGGGAGACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTC
1 AGGGAAACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTC
* *
37137984 TTCGATATGCTCCACTACTGCTTAGGGAGATAAGATCTGCTATCTTCA
66 TTCGATATGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCA
37138032 CTGATCTGCT
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 107 1.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (132 bp):
AGGGAAACAAGGTTCGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTC
TTCGATATGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCTGCTGCTAC
TC
Found at i:37151893 original size:30 final size:30
Alignment explanation
Indices: 37151849--37151923 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 30
37151839 ACGGGCAGAG
* *
37151849 ACACAGGCGTGTGTCTTAGCCATGTGTGAC
1 ACACAGGCATGTGTCTCAGCCATGTGTGAC
* *
37151879 ACACGGGCATGTGTCTCAGTCATGTGTGAC
1 ACACAGGCATGTGTCTCAGCCATGTGTGAC
*
37151909 ACACAGCCATGTGTC
1 ACACAGGCATGTGTC
37151924 CCCTGTGGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (30 bp):
ACACAGGCATGTGTCTCAGCCATGTGTGAC
Found at i:37151921 original size:17 final size:17
Alignment explanation
Indices: 37151866--37151922 Score: 50
Period size: 17 Copynumber: 3.6 Consensus size: 17
37151856 CGTGTGTCTT
37151866 AGCCATGTGTGACACAC
1 AGCCATGTGTGACACAC
* * *
37151883 GGGCATGTGT----CTC
1 AGCCATGTGTGACACAC
*
37151896 AGTCATGTGTGACACAC
1 AGCCATGTGTGACACAC
37151913 AGCCATGTGT
1 AGCCATGTGT
37151923 CCCCTGTGGT
Statistics
Matches: 29, Mismatches: 7, Indels: 8
0.66 0.16 0.18
Matches are distributed among these distances:
13 10 0.34
17 19 0.66
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (17 bp):
AGCCATGTGTGACACAC
Found at i:37177617 original size:17 final size:17
Alignment explanation
Indices: 37177577--37177620 Score: 58
Period size: 15 Copynumber: 2.7 Consensus size: 17
37177567 AAAGCTGATA
37177577 ATAATTAA-TATACATT
1 ATAATTAATTATACATT
37177593 ATAA-TAATTATA-ATT
1 ATAATTAATTATACATT
37177608 ATATATTAATTAT
1 ATA-ATTAATTAT
37177621 TATCACCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 9 0.36
16 9 0.36
17 7 0.28
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
ATAATTAATTATACATT
Found at i:37178546 original size:25 final size:25
Alignment explanation
Indices: 37178517--37178569 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
37178507 GTAGGCCCAT
* *
37178517 AATGCATCGTCCAGTCTTTTGGACC
1 AATGCATCATCCAGTCTTCTGGACC
37178542 AATGCATCATCCAGTCTTCTGGACC
1 AATGCATCATCCAGTCTTCTGGACC
37178567 AAT
1 AAT
37178570 CTCGTCAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (25 bp):
AATGCATCATCCAGTCTTCTGGACC
Found at i:37182164 original size:28 final size:27
Alignment explanation
Indices: 37182109--37182171 Score: 81
Period size: 28 Copynumber: 2.3 Consensus size: 27
37182099 GTGTTTTATT
*
37182109 TTAATACATGTCTTTAATTTATCATAG
1 TTAATACATGTCATTAATTTATCATAG
* *
37182136 TTAAGTACATGTCATTAATTTTTCCTAG
1 TTAA-TACATGTCATTAATTTATCATAG
37182164 TCTAATAC
1 T-TAATAC
37182172 CTGTTTTAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 4 0.13
28 24 0.77
29 3 0.10
ACGTcount: A:0.32, C:0.14, G:0.08, T:0.46
Consensus pattern (27 bp):
TTAATACATGTCATTAATTTATCATAG
Found at i:37185774 original size:11 final size:11
Alignment explanation
Indices: 37185758--37185789 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
37185748 ACTTACAATC
37185758 AAACACATTAA
1 AAACACATTAA
37185769 AAACACATT--
1 AAACACATTAA
37185778 AAACACATTAA
1 AAACACATTAA
37185789 A
1 A
37185790 CACATTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.47
11 10 0.53
ACGTcount: A:0.62, C:0.19, G:0.00, T:0.19
Consensus pattern (11 bp):
AAACACATTAA
Done.