Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62175169
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 981721 characters in sequence are not A, C, G, or T
File 14 of 202
Found at i:4488172 original size:24 final size:22
Alignment explanation
Indices: 4488130--4488188 Score: 64
Period size: 24 Copynumber: 2.6 Consensus size: 22
4488120 ATAATTTCTA
* *
4488130 TATATATATATAATCATTATCTT
1 TATATATATATATTCATTAAC-T
* *
4488153 TATGATCTATATATTTATTAACT
1 TAT-ATATATATATTCATTAACT
4488176 TATATATATATAT
1 TATATATATATAT
4488189 GTACGTATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 9 0.30
23 7 0.23
24 14 0.47
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.53
Consensus pattern (22 bp):
TATATATATATATTCATTAACT
Found at i:4488272 original size:106 final size:102
Alignment explanation
Indices: 4488033--4488244 Score: 280
Period size: 106 Copynumber: 2.0 Consensus size: 102
4488023 TTAAGTTTAT
* * * * * *
4488033 ATATGTAATTATTATTTTTATGATTTATATATTTATTATCTTATATATATATGTACGTATATATA
1 ATATATAATCATTATCTTCATGATCTATATATTTATTAACTTATATATATATGTACGTATATATA
* *
4488098 TAATACTTTCTATACATATTTTATAATTTCTATATAT
66 TAATACTTTCTATACACATTTTATAATTTCTATATAC
*
4488135 ATATATAATCATTATCTTTATGATCTATATATTTATTAACTTATATATATATATGTACGTATATA
1 ATATATAATCATTATCTTCATGATCTATATATTTATTAAC-T-TATATATATATGTACGTATATA
* * *
4488200 TGTATTATACTTTCTATCCACATTTTATAATTTCTATATGC
64 --TATAATACTTTCTATACACATTTTATAATTTCTATATAC
4488241 ATAT
1 ATAT
4488245 TTTCTTTATT
Statistics
Matches: 96, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
102 35 0.36
103 1 0.01
104 22 0.23
106 38 0.40
ACGTcount: A:0.35, C:0.08, G:0.04, T:0.52
Consensus pattern (102 bp):
ATATATAATCATTATCTTCATGATCTATATATTTATTAACTTATATATATATGTACGTATATATA
TAATACTTTCTATACACATTTTATAATTTCTATATAC
Found at i:4488596 original size:16 final size:16
Alignment explanation
Indices: 4488575--4488605 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4488565 TCTTTTACTC
4488575 AATTTTAAAAATAGAA
1 AATTTTAAAAATAGAA
*
4488591 AATTTTTAAAATAGA
1 AATTTTAAAAATAGA
4488606 GATAATACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.35
Consensus pattern (16 bp):
AATTTTAAAAATAGAA
Found at i:4494255 original size:8 final size:8
Alignment explanation
Indices: 4494242--4494270 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
4494232 CAACAAAGAA
4494242 GAAAACAT
1 GAAAACAT
4494250 GAAAACAT
1 GAAAACAT
4494258 GAAAACAT
1 GAAAACAT
4494266 GAAAA
1 GAAAA
4494271 AGGTCCATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.66, C:0.10, G:0.14, T:0.10
Consensus pattern (8 bp):
GAAAACAT
Found at i:4499792 original size:38 final size:38
Alignment explanation
Indices: 4499723--4499810 Score: 151
Period size: 38 Copynumber: 2.3 Consensus size: 38
4499713 AATATATTTA
4499723 TTTTTTAATTTTTTAATTTTAAAATATTTTTAAAATAC
1 TTTTTTAATTTTTTAATTTTAAAATATTTTTAAAATAC
*
4499761 TTTTTTATTATTTTTAATTTTAAAATA-TTTTAAAATAC
1 TTTTTTAAT-TTTTTAATTTTAAAATATTTTTAAAATAC
4499799 TTTTTTAATTTT
1 TTTTTTAATTTT
4499811 AAAATAAAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
37 3 0.06
38 27 0.57
39 17 0.36
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (38 bp):
TTTTTTAATTTTTTAATTTTAAAATATTTTTAAAATAC
Found at i:4501742 original size:26 final size:26
Alignment explanation
Indices: 4501707--4501794 Score: 142
Period size: 26 Copynumber: 3.4 Consensus size: 26
4501697 CGAATATAAT
4501707 ATATATTTTTATTTTTTAATTTTAAA
1 ATATATTTTTATTTTTTAATTTTAAA
4501733 ATATATTTTTATTTTTTAATTTTAAA
1 ATATATTTTTATTTTTTAATTTTAAA
*
4501759 ATAT-TTTTTAATTTTTTATTTTTAAA
1 ATATATTTTT-ATTTTTTAATTTTAAA
*
4501785 ATAAATTTTT
1 ATATATTTTT
4501795 GATGTTAATT
Statistics
Matches: 58, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
25 5 0.09
26 48 0.83
27 5 0.09
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (26 bp):
ATATATTTTTATTTTTTAATTTTAAA
Found at i:4506175 original size:92 final size:93
Alignment explanation
Indices: 4505992--4506204 Score: 241
Period size: 92 Copynumber: 2.3 Consensus size: 93
4505982 TTAATCCATT
* * * * * *
4505992 GCAACTTCATGGATATAGGATTGGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGATAAGAT
1 GCAACTTCAGGGGTATA-GATTTGTAGCTCCATCTTGCTCCACTGCAACTTCAGCGAGATAAGAT
* * * *
4506057 TTGTTAGGGTAGATTCAACTCGACCCACC
65 TCGTCAGGGTAAATTCAACTCAACCCACC
* *
4506086 GCAACTTCA-GGGTATATATTTGTAGCTCCATCTTTCTCCACTGCAACTTCAGCGAGATAAGATT
1 GCAACTTCAGGGGTATAGATTTGTAGCTCCATCTTGCTCCACTGCAACTTCAGCGAGATAAGATT
* * **
4506150 CGTCATGGTAAATTCGA-TCCAACCCATT
66 CGTCAGGGTAAATTCAACT-CAACCCACC
4506178 GCAACTTCAGGGGTATAAGATTTGTAG
1 GCAACTTCAGGGGTAT-AGATTTGTAG
4506205 TTGTAGCTTC
Statistics
Matches: 100, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
91 1 0.01
92 69 0.69
93 12 0.12
94 18 0.18
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (93 bp):
GCAACTTCAGGGGTATAGATTTGTAGCTCCATCTTGCTCCACTGCAACTTCAGCGAGATAAGATT
CGTCAGGGTAAATTCAACTCAACCCACC
Found at i:4511823 original size:56 final size:56
Alignment explanation
Indices: 4511761--4511875 Score: 221
Period size: 56 Copynumber: 2.1 Consensus size: 56
4511751 GAAGCCAAAT
4511761 TAAGTGACCATATCATATGTATCATATATATACACTAGTGTATCATGTAATTAAGG
1 TAAGTGACCATATCATATGTATCATATATATACACTAGTGTATCATGTAATTAAGG
*
4511817 TAAGTGACCATATCATATGTATCATATATATACACTAGTGTATCTTGTAATTAAGG
1 TAAGTGACCATATCATATGTATCATATATATACACTAGTGTATCATGTAATTAAGG
4511873 TAA
1 TAA
4511876 TTGTTTAGGT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (56 bp):
TAAGTGACCATATCATATGTATCATATATATACACTAGTGTATCATGTAATTAAGG
Found at i:4515391 original size:20 final size:20
Alignment explanation
Indices: 4515366--4515404 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
4515356 TAGTTTTAAT
* *
4515366 GAACACCGATATCAAATTGG
1 GAACACCAATACCAAATTGG
4515386 GAACACCAATACCAAATTG
1 GAACACCAATACCAAATTG
4515405 AAACTACCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.23, G:0.15, T:0.18
Consensus pattern (20 bp):
GAACACCAATACCAAATTGG
Found at i:4519616 original size:21 final size:21
Alignment explanation
Indices: 4519587--4519629 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
4519577 AAAGTAAGCT
*
4519587 TATTGCAACGCGTTTGTGATC
1 TATTACAACGCGTTTGTGATC
4519608 TATTACAACGCGTTTGTGATC
1 TATTACAACGCGTTTGTGATC
4519629 T
1 T
4519630 TTAGAACCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.40
Consensus pattern (21 bp):
TATTACAACGCGTTTGTGATC
Found at i:4520870 original size:19 final size:19
Alignment explanation
Indices: 4520829--4520870 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
4520819 AAAGGAGGGC
* *
4520829 TAAGTTAGAAAATAGAAAT
1 TAAGTTAAAAAATAGAAAA
4520848 TAAGTTAAAAAATA-AATAA
1 TAAGTTAAAAAATAGAA-AA
4520867 TAAG
1 TAAG
4520871 CTCTGCATGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 2 0.10
19 18 0.90
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.26
Consensus pattern (19 bp):
TAAGTTAAAAAATAGAAAA
Found at i:4521718 original size:15 final size:15
Alignment explanation
Indices: 4521698--4521727 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
4521688 AAAAAAGTAG
4521698 CCCAAAAGCATTTTT
1 CCCAAAAGCATTTTT
*
4521713 CCCAAAAGTATTTTT
1 CCCAAAAGCATTTTT
4521728 GAGAAGTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (15 bp):
CCCAAAAGCATTTTT
Found at i:4526487 original size:1 final size:1
Alignment explanation
Indices: 4526481--4526507 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
4526471 CACCGAATTC
4526481 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
4526508 GCGTTTTGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:4529901 original size:97 final size:98
Alignment explanation
Indices: 4529570--4529905 Score: 256
Period size: 98 Copynumber: 3.4 Consensus size: 98
4529560 TAAGAAATTG
* * * * * * *
4529570 ATCTTCATTAAATCTTATGCCA-TTCTTAATATTGCACATGTTTGTGAAGATTGATCCTATAATT
1 ATCTTCATTTATTATTATG-CAGTTCTTAATATTACACGTGTTTGTGAAGATCGATACTATAATT
** *
4529634 GATTTGATTTTTATC-A-TGAAAATACATACCATA
65 GATTTGATTTTTA-CGAGTTCAAATACAAACCATA
* * * *
4529667 ATCCTT-ATTTGTTCTTAAGCAGTTCTTAATATTACACGTGTTT-TGCTAAGATCGATATTATAA
1 AT-CTTCATTTATTATTATGCAGTTCTTAATATTACACGTGTTTGTG--AAGATCGATACTATAA
* * * ** *
4529730 TTTATTT-A-ATTTACGAGATTCAAATATAAATTATT
63 TTGATTTGATTTTTACGAG-TTCAAATACAAACCATA
* * * * * * * ** * *
4529765 GTCATCATTTACTCATTACGTAGTTCTCAATATTGCACGTGTTTGTGAAGATCGATGGTGTGATT
1 ATCTTCATTTA-TTATTATGCAGTTCTTAATATTACACGTGTTTGTGAAGATCGATACTATAATT
4529830 GATTTGATTTTTA-GAGTTCAAATACAAACCATA
65 GATTTGATTTTTACGAGTTCAAATACAAACCATA
* *
4529863 ATCTTCGTTTATTTTTATGCAGTTCTTAATATTACACGTGTTT
1 ATCTTCATTTATTATTATGCAGTTCTTAATATTACACGTGTTT
4529906 TACGAATGTC
Statistics
Matches: 181, Mismatches: 46, Indels: 24
0.72 0.18 0.10
Matches are distributed among these distances:
95 1 0.01
96 9 0.05
97 59 0.33
98 76 0.42
99 30 0.17
100 6 0.03
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.44
Consensus pattern (98 bp):
ATCTTCATTTATTATTATGCAGTTCTTAATATTACACGTGTTTGTGAAGATCGATACTATAATTG
ATTTGATTTTTACGAGTTCAAATACAAACCATA
Found at i:4529932 original size:196 final size:196
Alignment explanation
Indices: 4529592--4529962 Score: 471
Period size: 196 Copynumber: 1.9 Consensus size: 196
4529582 TCTTATGCCA
* *
4529592 TTCTTAATATTGCACATGTTTGTGAAGATTGATCCTATAATTGATTTGATTTTTATCATGAAAAT
1 TTCTCAATATTGCACATGTTTGTGAAGATCGATCCTATAATTGATTTGATTTTTATCATGAAAAT
* * * * *
4529657 ACATACCATAATCCTTATTTGTTCTTAAGCAGTTCTTAATATTACACGTGTTTTGCTAAGATCGA
66 ACAAACCATAATCCTTATTTATTCTTAAGCAGTTCTTAATATTACACGTGTTTTACGAAGATCAA
* *
4529722 TATTATAATTTATTTAATTTACGA-GATTCAAATATAAATTATTGTCATCATTTACTCATTACGT
131 TATTATAATTTATTTAATTTA-GAGGATTAAAATAGAAATTATTGTCATCATTTACTCATTACGT
4529786 AG
195 AG
* ** * * * **
4529788 TTCTCAATATTGCACGTGTTTGTGAAGATCGATGGTGTGATTGATTTGATTTTTA-GAGTTCAAA
1 TTCTCAATATTGCACATGTTTGTGAAGATCGATCCTATAATTGATTTGATTTTTATCA-TGAAAA
* * *
4529852 TACAAACCATAAT-CTTCGTTTATTTTTATGCAGTTCTTAATATTACACGTGTTTTACGAATG-T
65 TACAAACCATAATCCTT-ATTTATTCTTAAGCAGTTCTTAATATTACACGTGTTTTACGAA-GAT
* * *
4529915 CAATCTTATAGTTTATTTAATTTATAGGATTAAAATAGAAATTATTGT
128 CAATATTATAATTTATTTAATTTAGAGGATTAAAATAGAAATTATTGT
4529963 GGTAATTCAT
Statistics
Matches: 148, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
195 5 0.03
196 142 0.96
197 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.44
Consensus pattern (196 bp):
TTCTCAATATTGCACATGTTTGTGAAGATCGATCCTATAATTGATTTGATTTTTATCATGAAAAT
ACAAACCATAATCCTTATTTATTCTTAAGCAGTTCTTAATATTACACGTGTTTTACGAAGATCAA
TATTATAATTTATTTAATTTAGAGGATTAAAATAGAAATTATTGTCATCATTTACTCATTACGTA
G
Found at i:4531111 original size:40 final size:40
Alignment explanation
Indices: 4531056--4531133 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
4531046 AGATAAATCG
4531056 TTTTTTTTTCATTTTTCCAATCATTCTCTCCTATTTTTAA
1 TTTTTTTTTCATTTTTCCAATCATTCTCTCCTATTTTTAA
*
4531096 TTTTTTTTTCGTTTTTCCAATCATTCTCTCCTATTTTT
1 TTTTTTTTTCATTTTTCCAATCATTCTCTCCTATTTTT
4531134 TTTAATAGTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.14, C:0.21, G:0.01, T:0.64
Consensus pattern (40 bp):
TTTTTTTTTCATTTTTCCAATCATTCTCTCCTATTTTTAA
Found at i:4533982 original size:3 final size:3
Alignment explanation
Indices: 4533972--4534064 Score: 131
Period size: 3 Copynumber: 32.3 Consensus size: 3
4533962 GTTGGGTAGT
4533972 AGA A-A AGA AGA AG- AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
* * *
4534018 AAA AGA AGA AGA AGA AGA GGA AG- AGA AGA ATA AGA AGA AG- AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
4534064 A
1 A
4534065 ATGGAGCCAC
Statistics
Matches: 80, Mismatches: 6, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
2 8 0.10
3 72 0.90
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.01
Consensus pattern (3 bp):
AGA
Found at i:4540618 original size:23 final size:24
Alignment explanation
Indices: 4540592--4540642 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
4540582 TTTGCACTAA
4540592 CATTT-CCAAGATCAGTTCTCCAC
1 CATTTGCCAAGATCAGTTCTCCAC
4540615 CATTTGCCAAGATCAGTTCTCCAC
1 CATTTGCCAAGATCAGTTCTCCAC
4540639 CATT
1 CATT
4540643 GGATCTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 5 0.19
24 22 0.81
ACGTcount: A:0.25, C:0.33, G:0.10, T:0.31
Consensus pattern (24 bp):
CATTTGCCAAGATCAGTTCTCCAC
Found at i:4542147 original size:21 final size:21
Alignment explanation
Indices: 4542121--4542164 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
4542111 TTTTTTATTA
* * *
4542121 TGACTAAGTCCTAGGGAGATT
1 TGACTAAGCCCTAAGGAAATT
4542142 TGACTAAGCCCTAAGGAAATT
1 TGACTAAGCCCTAAGGAAATT
4542163 TG
1 TG
4542165 TTAGCTTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (21 bp):
TGACTAAGCCCTAAGGAAATT
Found at i:4544973 original size:3 final size:3
Alignment explanation
Indices: 4544967--4545001 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
4544957 ATAACAACAG
* *
4544967 TAA TAA TAA TAA TAG TAA TAT TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
4545002 GTAGTAATGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:4544991 original size:15 final size:15
Alignment explanation
Indices: 4544954--4545001 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
4544944 TTATAAAAAT
* *
4544954 ATAATAACAACAGTA
1 ATAATAATAATAGTA
4544969 ATAATAATAATAGTA
1 ATAATAATAATAGTA
* *
4544984 ATATTAATAATAATA
1 ATAATAATAATAGTA
4544999 ATA
1 ATA
4545002 GTAGTAATGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.31
Consensus pattern (15 bp):
ATAATAATAATAGTA
Found at i:4545262 original size:24 final size:24
Alignment explanation
Indices: 4545235--4545307 Score: 62
Period size: 24 Copynumber: 3.1 Consensus size: 24
4545225 TTGAAGGAAT
4545235 AATAATAAATAAATAATAAATGAA
1 AATAATAAATAAATAATAAATGAA
**
4545259 AATAAGT--ATAGGTAAATAAAT-AA
1 AATAA-TAAATAAAT-AATAAATGAA
* * *
4545282 AATAATAAGTAAATAAAAAAGGAA
1 AATAATAAATAAATAATAAATGAA
4545306 AA
1 AA
4545308 AAATGCCTTG
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
22 1 0.03
23 16 0.43
24 19 0.51
25 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.10, T:0.22
Consensus pattern (24 bp):
AATAATAAATAAATAATAAATGAA
Found at i:4545293 original size:20 final size:24
Alignment explanation
Indices: 4545249--4545298 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 24
4545239 ATAAATAAAT
4545249 AATAAATGAAAATAAGTATAGGTA
1 AATAAATGAAAATAAGTATAGGTA
4545273 AATAAAT-AAAATAA-TA-A-GTA
1 AATAAATGAAAATAAGTATAGGTA
4545293 AATAAA
1 AATAAA
4545299 AAAGGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 9 0.35
21 1 0.04
22 2 0.08
23 7 0.27
24 7 0.27
ACGTcount: A:0.66, C:0.00, G:0.10, T:0.24
Consensus pattern (24 bp):
AATAAATGAAAATAAGTATAGGTA
Found at i:4546758 original size:51 final size:51
Alignment explanation
Indices: 4546682--4546805 Score: 167
Period size: 51 Copynumber: 2.4 Consensus size: 51
4546672 GTCAATTTTA
* * **
4546682 AATGCCAGGGAGATGAGATTCGTTGCCTTCAACTTTAATCTGTTCCGTTAC
1 AATGCCAGGGAAATAAGATTCGTTGCCTTCAACTTTAATCTGTTCCACTAC
* * *
4546733 AATGCCGGGGAAATAAGATTTGTTGCCTTCAGCTTTAATCTGTTCCACTAC
1 AATGCCAGGGAAATAAGATTCGTTGCCTTCAACTTTAATCTGTTCCACTAC
* *
4546784 AACGCCAGGGAAATAAAATTCG
1 AATGCCAGGGAAATAAGATTCG
4546806 CTGTCCTCGA
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (51 bp):
AATGCCAGGGAAATAAGATTCGTTGCCTTCAACTTTAATCTGTTCCACTAC
Found at i:4547008 original size:132 final size:132
Alignment explanation
Indices: 4546824--4547417 Score: 868
Period size: 132 Copynumber: 4.5 Consensus size: 132
4546814 GATCCGCTCT
* * * * * *
4546824 ACTACTGCTCAAGGAGACATGATCTGCAATCTTCAACCTACTCCACTACTGCTCAAGGAGATAGG
1 ACTACTGCTTAGGGAGACAAGATCTACATTCTTCAACCTACTCCACTACTGCTCAGGGAGATAGG
* * * **
4546889 ATTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCATTTTTTATCTACT
66 ATTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTTCGATCTACT
*
4546954 TC
131 CC
*
4546956 ACTACTGCTTAGGGAGACAAGATCTACATTCTTCAACCTACTCCACTGCTGCTCAGGGAGAT-GA
1 ACTACTGCTTAGGGAGACAAGATCTACATTCTTCAACCTACTCCACTACTGCTCAGGGAGATAG-
* * * * *
4547020 GATTAGTAGCCTAAATCTGCTTCCCTACTACATTGGAAAGATAAGATTCACCGTCTTCGATCTGC
65 GATTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTTCGATCTAC
4547085 TCC
130 TCC
* * * *
4547088 GCTATTGCTTAGGGAGACCAGATCTACATTCTTCAACCTACTCCACTTA-TGCTCAGGGAGATAT
1 ACTACTGCTTAGGGAGACAAGATCTACATTCTTCAACCTACTCCAC-TACTGCTCAGGGAGATAG
4547152 GATTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTTCGATCTAC
65 GATTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTTCGATCTAC
4547217 TCC
130 TCC
* * * ** * *
4547220 GCTACTGCTTAGGGAGACCAGATCTACATTCTTCAGCCTACTCCACTGTTGTTCAGAGAGATAGG
1 ACTACTGCTTAGGGAGACAAGATCTACATTCTTCAACCTACTCCACTACTGCTCAGGGAGATAGG
*
4547285 ATTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTTCGATCTGCT
66 ATTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTTCGATCTACT
4547350 CC
131 CC
* *
4547352 ACTACTGCTTAGGAAAACAAGATCTACATTCTTCAACCTACTCCACTACTGCTCAGGGAGATAGG
1 ACTACTGCTTAGGGAGACAAGATCTACATTCTTCAACCTACTCCACTACTGCTCAGGGAGATAGG
4547417 A
66 A
4547418 CTTGTTATCT
Statistics
Matches: 414, Mismatches: 44, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
131 2 0.00
132 411 0.99
133 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (132 bp):
ACTACTGCTTAGGGAGACAAGATCTACATTCTTCAACCTACTCCACTACTGCTCAGGGAGATAGG
ATTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTTCGATCTACT
CC
Found at i:4548005 original size:12 final size:12
Alignment explanation
Indices: 4547988--4548012 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4547978 TGACAACAAG
4547988 ATCTGAAGGGAT
1 ATCTGAAGGGAT
4548000 ATCTGAAGGGAT
1 ATCTGAAGGGAT
4548012 A
1 A
4548013 GTCTCAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.32, T:0.24
Consensus pattern (12 bp):
ATCTGAAGGGAT
Found at i:4555781 original size:11 final size:13
Alignment explanation
Indices: 4555757--4555788 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
4555747 TAGTTTATTA
4555757 ATATTTTAATATG
1 ATATTTTAATATG
4555770 AT-TTTTAA-ATG
1 ATATTTTAATATG
4555781 ATATTTTA
1 ATATTTTA
4555789 TTAATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 11 0.61
13 2 0.11
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (13 bp):
ATATTTTAATATG
Found at i:4558394 original size:51 final size:51
Alignment explanation
Indices: 4558318--4558606 Score: 230
Period size: 51 Copynumber: 5.7 Consensus size: 51
4558308 GATGAACACA
* * *
4558318 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGCTTTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAGAAGATTTGGTCACG
* * * *
4558369 TGTGTAGTACTGTGTGAAGGCTACTACGTGTACCGATAA-ATGATGGTCATG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAGAAGAT-TTGGTCACG
* * * * * *
4558420 TGTGTAGTACTATG-CACAGGCTACTACATGTATCG-GAATGA-TGGGTCGCA
1 TGTGTAGTACTATGTGA-AGGCTACTACGTGTACCGAGAA-GATTTGGTCACG
* * * * * *
4558470 TGTGTAGTACTATGTGCAGGCTACTATGCGTACC-AAATAGCTTTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAGA-AGATTTGGTCACG
* * * ** *
4558521 TGTGTAGTACTATGTGTAGGCTACTACGTGTATC-AGATGGAAATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAGA-AGATTTGGTCACG
* * * *
4558572 TGTGTAGTACTACGTGTAGGCTACTATGTGAACCG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCG
4558607 GTTACCATTG
Statistics
Matches: 185, Mismatches: 44, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
50 37 0.20
51 147 0.79
52 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (51 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAGAAGATTTGGTCACG
Found at i:4558503 original size:101 final size:101
Alignment explanation
Indices: 4558361--4558599 Score: 250
Period size: 101 Copynumber: 2.4 Consensus size: 101
4558351 CGAGAAGCTT
* * * * * * *
4558361 TGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTACC-GATAAATGATGGTCATGTGTGT
1 TGGTCACATGTGTAGTACTATGTGAAGGCTACTATGCGTACCAAATAAAT-ATGATCACGTGTGT
*
4558425 AGTACTATGCACAGGCTACTACATGTATCGGAAT-G-A
65 AGTACTATGCACAGGCTACTACATGTATCAG-ATGGAA
* * ** *
4558461 TGGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAAATAGCTTTGATCACGTGTGT
1 T-GGTCACATGTGTAGTACTATGTGAAGGCTACTATGCGTACCAAATAAATATGATCACGTGTGT
*** *
4558526 AGTACTATGTGTAGGCTACTACGTGTATCAGATGGAAA
65 AGTACTATGCACAGGCTACTACATGTATCAGATGG-AA
* *
4558564 TGGTCACATGTGTAGTACTACGTGTAGGCTACTATG
1 TGGTCACATGTGTAGTACTATGTGAAGGCTACTATG
4558600 TGAACCGGTT
Statistics
Matches: 114, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
100 3 0.03
101 73 0.64
102 36 0.32
103 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (101 bp):
TGGTCACATGTGTAGTACTATGTGAAGGCTACTATGCGTACCAAATAAATATGATCACGTGTGTA
GTACTATGCACAGGCTACTACATGTATCAGATGGAA
Found at i:4559625 original size:49 final size:49
Alignment explanation
Indices: 4559560--4559753 Score: 262
Period size: 49 Copynumber: 3.9 Consensus size: 49
4559550 ACATGTGAAC
* * *
4559560 ATGTGATTATATGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGT
1 ATGTGA-TATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGT
* * *
4559610 AAGTGATATGTGATTCCGTGTAAGACCATAACTGGGCTATGGCATCGGT
1 ATGTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGT
* * *
4559659 ATGTGATTTGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGAT
1 ATGTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGT
* * * *
4559708 CTGTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATC
1 ATGTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATC
4559754 AAGAAAACGA
Statistics
Matches: 132, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
49 127 0.96
50 5 0.04
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.32
Consensus pattern (49 bp):
ATGTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGT
Found at i:4565918 original size:3 final size:3
Alignment explanation
Indices: 4565910--4565990 Score: 94
Period size: 3 Copynumber: 27.0 Consensus size: 3
4565900 TATAAAAATG
4565910 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
* * * *
4565956 -AA TAG TAA TAA TGAA -GA TAA GAA TGA TAA TAA TAA
1 TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
4565991 CAGCGAACAT
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
2 2 0.03
3 61 0.92
4 3 0.05
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:4570159 original size:9 final size:9
Alignment explanation
Indices: 4570138--4570221 Score: 57
Period size: 9 Copynumber: 9.1 Consensus size: 9
4570128 AAAATCTGAG
4570138 AATAAGAAT-
1 AATAA-AATA
4570147 AAT-AAATAA
1 AATAAAAT-A
4570156 AATAAAATA
1 AATAAAATA
*
4570165 AA-AAAATT
1 AATAAAATA
*
4570173 AGTAAAATA
1 AATAAAATA
*
4570182 AAAAATAATA
1 AATAA-AATA
* *
4570192 AATATAACA
1 AATAAAATA
4570201 AATAATAAATA
1 AAT-A-AAATA
4570212 AATAAAATA
1 AATAAAATA
4570221 A
1 A
4570222 GCATAATGGG
Statistics
Matches: 58, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
7 3 0.05
8 7 0.12
9 29 0.50
10 13 0.22
11 6 0.10
ACGTcount: A:0.74, C:0.01, G:0.02, T:0.23
Consensus pattern (9 bp):
AATAAAATA
Found at i:4570198 original size:16 final size:15
Alignment explanation
Indices: 4570147--4570221 Score: 66
Period size: 16 Copynumber: 4.9 Consensus size: 15
4570137 GAATAAGAAT
4570147 AATAAATAAAAT-A-A
1 AATAAA-AAAATAATA
*
4570161 AATAAAAAAATTAGTA
1 AATAAAAAAA-TAATA
4570177 AA-ATAAAAAATAATA
1 AATA-AAAAAATAATA
*
4570192 AATATAACAAATAATA
1 AATA-AAAAAATAATA
4570208 AATAAATAAAATAA
1 AATAAA-AAAATAA
4570222 GCATAATGGG
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
13 4 0.08
14 7 0.14
15 9 0.18
16 31 0.61
ACGTcount: A:0.75, C:0.01, G:0.01, T:0.23
Consensus pattern (15 bp):
AATAAAAAAATAATA
Found at i:4570203 original size:23 final size:23
Alignment explanation
Indices: 4570177--4570221 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
4570167 AAAATTAGTA
4570177 AAATAAAAAAT-AATAAATATAAC
1 AAATAAAAAATAAATAAA-ATAAC
*
4570200 AAATAATAAATAAATAAAATAA
1 AAATAAAAAATAAATAAAATAA
4570222 GCATAATGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (23 bp):
AAATAAAAAATAAATAAAATAAC
Found at i:4575425 original size:19 final size:19
Alignment explanation
Indices: 4575397--4575434 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
4575387 TTGTAAATTT
*
4575397 TTTTATAATTTTTATAAAA
1 TTTTACAATTTTTATAAAA
4575416 TTTTACAATTTTTATAAAA
1 TTTTACAATTTTTATAAAA
4575435 AAAATTCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTACAATTTTTATAAAA
Found at i:4575495 original size:20 final size:20
Alignment explanation
Indices: 4575472--4575518 Score: 87
Period size: 19 Copynumber: 2.4 Consensus size: 20
4575462 TTGTTTTATA
4575472 TTTTTATTAAAATTTAATAT
1 TTTTTATTAAAATTTAATAT
4575492 TTTTTA-TAAAATTTAATAT
1 TTTTTATTAAAATTTAATAT
4575511 TTTTTATT
1 TTTTTATT
4575519 TTTTATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTTTATTAAAATTTAATAT
Found at i:4575507 original size:26 final size:26
Alignment explanation
Indices: 4575478--4575527 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
4575468 TATATTTTTA
4575478 TTAAAATTTAATATTTTTTATAAAAT
1 TTAAAATTTAATATTTTTTATAAAAT
* **
4575504 TTAATATTTTTTATTTTTTATAAA
1 TTAAAATTTAATATTTTTTATAAA
4575528 TAAGAGCAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (26 bp):
TTAAAATTTAATATTTTTTATAAAAT
Found at i:4575678 original size:86 final size:86
Alignment explanation
Indices: 4575534--4575742 Score: 255
Period size: 86 Copynumber: 2.4 Consensus size: 86
4575524 TAAATAAGAG
* * *
4575534 CAGGGGCTTAATTGC-TTTTTT-AAAAAATTTTGAGGGTCTTTTTTATACATTTTGAAAGTTCAA
1 CAGGGGCTTAATTGCTTTTTTTGAAAAAA-TTTGAGGGCCTTTTTGATACATTTGGAAAGTTCAA
*
4575597 GTATTCAATT-AAGTGA-AAAAAA
65 GTACTCAATTGAA-T-ACAAAAAA
* * * *
4575619 CAGGGGCTTTATTGCTTTTTTTGAAGAAGTTTGAGGGCCTTTTTGATGCATTTGGAAAGTTCAAG
1 CAGGGGCTTAATTGCTTTTTTTGAAAAAATTTGAGGGCCTTTTTGATACATTTGGAAAGTTCAAG
*
4575684 TGCTCAATTGAATACAAAAAA
66 TACTCAATTGAATACAAAAAA
* * *
4575705 AAGGGACTTAATTGCTTTTGTTGAAAAAATTTGAGGGC
1 CAGGGGCTTAATTGCTTTTTTTGAAAAAATTTGAGGGC
4575743 TTTGTACACC
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
85 15 0.14
86 84 0.80
87 6 0.06
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (86 bp):
CAGGGGCTTAATTGCTTTTTTTGAAAAAATTTGAGGGCCTTTTTGATACATTTGGAAAGTTCAAG
TACTCAATTGAATACAAAAAA
Found at i:4578870 original size:98 final size:97
Alignment explanation
Indices: 4578752--4579056 Score: 276
Period size: 98 Copynumber: 3.1 Consensus size: 97
4578742 ACCATAGTCC
* * * *
4578752 TCATTTGTTCTTAAGCAGTTCTTAATATTACATGTGTTTTGCTAATATCGATATTATAATTTATT
1 TCATTTATTCATATGCAGTTCTTAATATTACACGTGTTTTGCTAATATCGATATTATAATTTATT
* *
4578817 TAATTTACGAGATTCAAATATAAATTATTGTCT
66 TAATTTA-GAGATTCAAATACAAATTATTATCT
* * * *
4578850 TCATTTATTCATATGTAGTTCTCAATATTACACGTG-TTTG-TGAAGATCGATGA-TATAATTGA
1 TCATTTATTCATATGCAGTTCTTAATATTACACGTGTTTTGCT-AATATCGAT-ATTATAATTTA
* ** *
4578912 TTTGATTTTTAGAG-TTCAAATACAAACCATCATCT
64 TTT-A-ATTTAGAGATTCAAATACAAATTATTATCT
* * * * * * * *
4578947 TCATTTATTCTTATGCGGTTCTTAATATTACACGTGTTTTACAAATGTCAATCTTATAATTTGTT
1 TCATTTATTCATATGCAGTTCTTAATATTACACGTGTTTTGCTAATATCGATATTATAATTTATT
* * * **
4579012 TAATTTATAGAATTAAAATAGAAATTATTATGG
66 TAATTTAGAG-ATTCAAATACAAATTATTATCT
*
4579045 TCATTCATTCAT
1 TCATTTATTCAT
4579057 TGTTAGTTTT
Statistics
Matches: 161, Mismatches: 37, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
96 7 0.04
97 72 0.45
98 78 0.48
99 4 0.02
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.45
Consensus pattern (97 bp):
TCATTTATTCATATGCAGTTCTTAATATTACACGTGTTTTGCTAATATCGATATTATAATTTATT
TAATTTAGAGATTCAAATACAAATTATTATCT
Found at i:4578909 original size:195 final size:194
Alignment explanation
Indices: 4578565--4579056 Score: 511
Period size: 195 Copynumber: 2.5 Consensus size: 194
4578555 CTTCATTAAA
* * * * * * * ** *
4578565 TCTTATGCTGTTCTTAATTTTGCACGTATTTTGCAAAGAAAAATCTTATAATTTATTTAATTTAT
1 TCTTAAGCAGTTCTTAATATTACACGTGTTTTACAAATATCAATATTATAATTTATTTAATTTA-
* * * *
4578630 TG-GCTTCAAAGATAAATTATTGTATTCATTCATTCATACGCAGTTCTTAATGTTACACATACTT
65 -GAGATTCAAATATAAATTATTGTATTCATTCATTCATACGCAGTTCTCAATATTACACATACTT
* * ** *
4578694 GTGAAGATTGATCCTATAATTGAATTGATTTTTATTGTTAAAATACATACCAT-AGTCCTCATTT
129 GTGAAGATCGATCATATAATTGAATTGATTTTTAGAGTTAAAATACAAACCATCA-TCCTCATTT
*
4578758 GT
193 AT
* * * *
4578760 TCTTAAGCAGTTCTTAATATTACATGTGTTTTGCTAATATCGATATTATAATTTATTTAATTTAC
1 TCTTAAGCAGTTCTTAATATTACACGTGTTTTACAAATATCAATATTATAATTTATTTAATTTA-
* * * * * **
4578825 GAGATTCAAATATAAATTATTGTCTTCATTTATTCATATGTAGTTCTCAATATTACACGTGTTTG
65 GAGATTCAAATATAAATTATTGTATTCATTCATTCATACGCAGTTCTCAATATTACACATACTTG
* * * *
4578890 TGAAGATCGATGATATAATTGATTTGATTTTTAGAGTTCAAATACAAACCATCATCTTCATTTAT
130 TGAAGATCGATCATATAATTGAATTGATTTTTAGAGTTAAAATACAAACCATCATCCTCATTTAT
* * * * * *
4578955 TCTTATGCGGTTCTTAATATTACACGTGTTTTACAAATGTCAATCTTATAATTTGTTTAATTTAT
1 TCTTAAGCAGTTCTTAATATTACACGTGTTTTACAAATATCAATATTATAATTTATTTAATTTAG
* * * **
4579020 AGAATTAAAATAGAAATTATTATGGTCATTCATTCAT
66 AG-ATTCAAATATAAATTATTGTATTCATTCATTCAT
4579057 TGTTAGTTTT
Statistics
Matches: 244, Mismatches: 50, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
194 3 0.01
195 240 0.98
196 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (194 bp):
TCTTAAGCAGTTCTTAATATTACACGTGTTTTACAAATATCAATATTATAATTTATTTAATTTAG
AGATTCAAATATAAATTATTGTATTCATTCATTCATACGCAGTTCTCAATATTACACATACTTGT
GAAGATCGATCATATAATTGAATTGATTTTTAGAGTTAAAATACAAACCATCATCCTCATTTAT
Found at i:4578949 original size:97 final size:95
Alignment explanation
Indices: 4578654--4578985 Score: 292
Period size: 97 Copynumber: 3.4 Consensus size: 95
4578644 AATTATTGTA
* * * * ** * * *
4578654 TTCATTCATTCATACGCAGTTCTTAATGTTACACATACTTGTGAAGATTGATCCTATAATTGAAT
1 TTCATTTATTCATATGCAGTTCTTAATATTACACGTGTTTGTGAAGATCGAT-ATATAATTGATT
** * *
4578719 TGATTTTTATTGTTAAAATACATACCATAGTC
65 TGATTTTTAGAGTTCAAATACAAACCATA-TC
* * * * * * *
4578751 CTCATTTGTTCTTAAGCAGTTCTTAATATTACATGTGTTT-TGCTAATATCGATATTATAATTTA
1 TTCATTTATTCATATGCAGTTCTTAATATTACACGTGTTTGTG--AAGATCGATA-TATAATTGA
* * ** *
4578815 TTT-A-ATTTACGAGATTCAAATATAAATTATTGTC
63 TTTGATTTTTA-GAG-TTCAAATACAAACCA-TATC
* *
4578849 TTCATTTATTCATATGTAGTTCTCAATATTACACGTGTTTGTGAAGATCGATGATATAATTGATT
1 TTCATTTATTCATATGCAGTTCTTAATATTACACGTGTTTGTGAAGATCGAT-ATATAATTGATT
4578914 TGATTTTTAGAGTTCAAATACAAACCATCATC
65 TGATTTTTAGAGTTCAAATACAAACCAT-ATC
* *
4578946 TTCATTTATTCTTATGCGGTTCTTAATATTACACGTGTTT
1 TTCATTTATTCATATGCAGTTCTTAATATTACACGTGTTT
4578986 TACAAATGTC
Statistics
Matches: 182, Mismatches: 42, Indels: 22
0.74 0.17 0.09
Matches are distributed among these distances:
96 7 0.04
97 101 0.55
98 67 0.37
99 7 0.04
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (95 bp):
TTCATTTATTCATATGCAGTTCTTAATATTACACGTGTTTGTGAAGATCGATATATAATTGATTT
GATTTTTAGAGTTCAAATACAAACCATATC
Found at i:4579522 original size:26 final size:26
Alignment explanation
Indices: 4579487--4579536 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
4579477 GAGTTGTCCA
*
4579487 AAAATAACATATATGGTTATGAATCC
1 AAAATAACATATATAGTTATGAATCC
* *
4579513 AAAATCACATATTTAGTTATGAAT
1 AAAATAACATATATAGTTATGAAT
4579537 ATGTCCAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34
Consensus pattern (26 bp):
AAAATAACATATATAGTTATGAATCC
Found at i:4580046 original size:26 final size:26
Alignment explanation
Indices: 4580017--4580069 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4580007 AGCAAAGTTG
*
4580017 TCCAAAATCACATATATGGTTATGAA
1 TCCAAAATCACATATATGATTATGAA
*
4580043 TCCAAAATCACATATTTGATTATGAA
1 TCCAAAATCACATATATGATTATGAA
4580069 T
1 T
4580070 ATGTCCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.34
Consensus pattern (26 bp):
TCCAAAATCACATATATGATTATGAA
Found at i:4580440 original size:15 final size:16
Alignment explanation
Indices: 4580410--4580442 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
4580400 ATGTTAATGC
*
4580410 TATTTAATTTTTAAAA
1 TATTTAATTATTAAAA
4580426 TATTTAA-TATTAAAA
1 TATTTAATTATTAAAA
4580441 TA
1 TA
4580443 ACACAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TATTTAATTATTAAAA
Found at i:4583168 original size:43 final size:43
Alignment explanation
Indices: 4583055--4583183 Score: 120
Period size: 43 Copynumber: 3.0 Consensus size: 43
4583045 ATATCGTACA
** **
4583055 ATGCCAACGTCTCAGACATGGTCTTACATTTAGTCACATAACG
1 ATGCCAACGTCTCAGACATGGTCTTACACGTAAACACATAACG
* * * * *
4583098 ATGCC-ACTGTCCCAAACAGGGTGTTACACGTAAACACA-AGTCG
1 ATGCCAAC-GTCTCAGACATGGTCTTACACGTAAACACATA-ACG
*
4583141 ATGCCAACGTCTCAGACATTGTCTTACACG-ATAACACATAACG
1 ATGCCAACGTCTCAGACATGGTCTTACACGTA-AACACATAACG
4583184 GAATCCTATG
Statistics
Matches: 66, Mismatches: 15, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
42 4 0.06
43 59 0.89
44 3 0.05
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCTCAGACATGGTCTTACACGTAAACACATAACG
Found at i:4584388 original size:27 final size:27
Alignment explanation
Indices: 4584350--4584403 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
4584340 TATAAATACA
4584350 GATAATAATATTTAATAAATTTTTTTG
1 GATAATAATATTTAATAAATTTTTTTG
4584377 GATAATAATATTTAATAAATTTTTTTG
1 GATAATAATATTTAATAAATTTTTTTG
4584404 ACTAGGATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (27 bp):
GATAATAATATTTAATAAATTTTTTTG
Found at i:4591956 original size:21 final size:20
Alignment explanation
Indices: 4591931--4591970 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
4591921 ATTGAAGTTG
*
4591931 GAAATTACTTTTGAAAAAATT
1 GAAA-TACTTTCGAAAAAATT
*
4591952 GAAATGCTTTCGAAAAAAT
1 GAAATACTTTCGAAAAAAT
4591971 AAAATATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.33
Consensus pattern (20 bp):
GAAATACTTTCGAAAAAATT
Found at i:4591975 original size:19 final size:20
Alignment explanation
Indices: 4591938--4591975 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4591928 TTGGAAATTA
* *
4591938 CTTTTGAAAAAATTGAAATG
1 CTTTCGAAAAAATTAAAATG
4591958 CTTTCGAAAAAA-TAAAAT
1 CTTTCGAAAAAATTAAAAT
4591976 ATTTATTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.32
Consensus pattern (20 bp):
CTTTCGAAAAAATTAAAATG
Found at i:4607763 original size:25 final size:25
Alignment explanation
Indices: 4607729--4607778 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
4607719 ACTACAATAG
4607729 GTTAATTACTTGACATAATTTTCAC
1 GTTAATTACTTGACATAATTTTCAC
4607754 GTTAATTACTTGACATAATTTTCAC
1 GTTAATTACTTGACATAATTTTCAC
4607779 AAACTTAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (25 bp):
GTTAATTACTTGACATAATTTTCAC
Found at i:4612805 original size:33 final size:33
Alignment explanation
Indices: 4612763--4612828 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
4612753 ATGACTATTG
4612763 AACTTATTTTCTTGAATCGAGTTAACCCTATAT
1 AACTTATTTTCTTGAATCGAGTTAACCCTATAT
4612796 AACTTATTTTCTTGAATCGAGTTAACCCTATAT
1 AACTTATTTTCTTGAATCGAGTTAACCCTATAT
4612829 CCCGAGCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.42
Consensus pattern (33 bp):
AACTTATTTTCTTGAATCGAGTTAACCCTATAT
Found at i:4612917 original size:132 final size:132
Alignment explanation
Indices: 4612682--4612924 Score: 319
Period size: 132 Copynumber: 1.8 Consensus size: 132
4612672 TGTTTGAACT
* * * * *
4612682 GAGTTAACCCTATGCTCCGAGGAAACTGGTTGAGAAGTATAAATTCCATCTTCTGGAAGGCTATT
1 GAGTTAACCCTATGCTCCGAGCAAACCGATTGAGAAGTATAAACTCCATCTTCTGGAAGGCTACT
* * * *
4612747 TCTAATATGACTATTGAACTTATTTTCTTGAATCGAGTTAACCCTATATAACTTATTTTCTTGAA
66 TCCAATATGACTATTAAACTGATTTGCTTGAATCGAGTTAACCCTATATAACTTATTTTCTTGAA
4612812 TC
131 TC
* ** *
4612814 GAGTTAACCCTAT-ATCCCGAGCAAACCGATTGAGCCGTATAAACTCCATCTTCTGGTAGGCTAC
1 GAGTTAACCCTATGCT-CCGAGCAAACCGATTGAGAAGTATAAACTCCATCTTCTGGAAGGCTAC
* *
4612878 TTCCAATATGATTATTAAACTGGTTTGCTTGAA-CTGAGTTAACCCTA
65 TTCCAATATGACTATTAAACTGATTTGCTTGAATC-GAGTTAACCCTA
4612925 GATTCTGAGT
Statistics
Matches: 94, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
131 2 0.02
132 92 0.98
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.34
Consensus pattern (132 bp):
GAGTTAACCCTATGCTCCGAGCAAACCGATTGAGAAGTATAAACTCCATCTTCTGGAAGGCTACT
TCCAATATGACTATTAAACTGATTTGCTTGAATCGAGTTAACCCTATATAACTTATTTTCTTGAA
TC
Found at i:4613057 original size:16 final size:15
Alignment explanation
Indices: 4613032--4613064 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
4613022 ATACAGTGTA
4613032 ATTTAAATTATTTAT
1 ATTTAAATTATTTAT
4613047 ATTTGAAATTATTTAT
1 ATTT-AAATTATTTAT
4613063 AT
1 AT
4613065 CTGATAGGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (15 bp):
ATTTAAATTATTTAT
Found at i:4613823 original size:2 final size:2
Alignment explanation
Indices: 4613816--4613844 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
4613806 GTTAACACAG
4613816 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4613845 GCTTTAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4614309 original size:25 final size:27
Alignment explanation
Indices: 4614258--4614310 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
4614248 AAATTTACTT
**
4614258 TATTATTATTAGTTATTTTGGTCAAATA
1 TATTATTATTAGTTATTTT-GAAAAATA
4614286 TATTATTATTAGTTA-TTT-AAAAATA
1 TATTATTATTAGTTATTTTGAAAAATA
4614311 AAATTAAGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 5 0.22
27 3 0.13
28 15 0.65
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.53
Consensus pattern (27 bp):
TATTATTATTAGTTATTTTGAAAAATA
Found at i:4619035 original size:2 final size:2
Alignment explanation
Indices: 4619028--4619074 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
4619018 GTGGTTGTTT
4619028 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4619070 TA TA T
1 TA TA T
4619075 CAATATCAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4620235 original size:6 final size:6
Alignment explanation
Indices: 4620224--4620250 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
4620214 CAGCTTTTAC
4620224 AAGCAA AAGCAA AAGCAA AAGCAA AAG
1 AAGCAA AAGCAA AAGCAA AAGCAA AAG
4620251 GCAAGGATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.67, C:0.15, G:0.19, T:0.00
Consensus pattern (6 bp):
AAGCAA
Found at i:4620644 original size:18 final size:18
Alignment explanation
Indices: 4620618--4620652 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4620608 AAGCATATTT
4620618 AATGCATGTGAAAAATGA
1 AATGCATGTGAAAAATGA
* *
4620636 AATGTATGTGACAAATG
1 AATGCATGTGAAAAATG
4620653 TGTACAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.06, G:0.23, T:0.26
Consensus pattern (18 bp):
AATGCATGTGAAAAATGA
Found at i:4624305 original size:9 final size:9
Alignment explanation
Indices: 4624293--4624378 Score: 111
Period size: 9 Copynumber: 9.4 Consensus size: 9
4624283 AATAAAAAAA
4624293 AATTCGGGT
1 AATTCGGGT
4624302 AATTCGGGT
1 AATTCGGGT
*
4624311 ATTTTTC-GGT
1 A--ATTCGGGT
*
4624321 AATTCGGTT
1 AATTCGGGT
*
4624330 AATTCGGTT
1 AATTCGGGT
4624339 AATTCGGGT
1 AATTCGGGT
*
4624348 AATTCGGTT
1 AATTCGGGT
4624357 AATTCGGGT
1 AATTCGGGT
4624366 AATTCGGGT
1 AATTCGGGT
4624375 AATT
1 AATT
4624379 TTTAACCAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
8 3 0.04
9 58 0.85
10 4 0.06
11 3 0.04
ACGTcount: A:0.22, C:0.10, G:0.27, T:0.41
Consensus pattern (9 bp):
AATTCGGGT
Found at i:4624556 original size:12 final size:12
Alignment explanation
Indices: 4624539--4624563 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4624529 AGTAATTTCG
4624539 GGTCGGTTAACC
1 GGTCGGTTAACC
4624551 GGTCGGTTAACC
1 GGTCGGTTAACC
4624563 G
1 G
4624564 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:4629958 original size:27 final size:28
Alignment explanation
Indices: 4629908--4629977 Score: 108
Period size: 27 Copynumber: 2.5 Consensus size: 28
4629898 ATATAAAAAA
*
4629908 TTACCAAAATGT-TATAACTTTTTTTTAT
1 TTACCAAAATATATATAAC-TTTTTTTAT
4629936 TTACCAAAATATATATAA-TTTTTTTAT
1 TTACCAAAATATATATAACTTTTTTTAT
4629963 TTACCAAAATATATA
1 TTACCAAAATATATA
4629978 AAAAAAACAG
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 24 0.60
28 11 0.28
29 5 0.12
ACGTcount: A:0.40, C:0.10, G:0.01, T:0.49
Consensus pattern (28 bp):
TTACCAAAATATATATAACTTTTTTTAT
Found at i:4630064 original size:27 final size:27
Alignment explanation
Indices: 4630026--4630102 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 27
4630016 CCCTGGGTGG
4630026 AGGGAAGCAGGTTGGCGGCACCAAACA
1 AGGGAAGCAGGTTGGCGGCACCAAACA
** *
4630053 AGGGAAGCAGGTTGGCGGCACCAGTCG
1 AGGGAAGCAGGTTGGCGGCACCAAACA
* *
4630080 AGAGAACCAGGTTGGCGGCACCA
1 AGGGAAGCAGGTTGGCGGCACCA
4630103 GTCCTGCCAA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.29, C:0.23, G:0.39, T:0.09
Consensus pattern (27 bp):
AGGGAAGCAGGTTGGCGGCACCAAACA
Found at i:4630114 original size:27 final size:27
Alignment explanation
Indices: 4630033--4630127 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 27
4630023 TGGAGGGAAG
** * ** *
4630033 CAGGTTGGCGGCACCAAACAAGGGAAG
1 CAGGTTGGCGGCACCAGTCCAGACAAC
* *
4630060 CAGGTTGGCGGCACCAGTCGAGAGAAC
1 CAGGTTGGCGGCACCAGTCCAGACAAC
* *
4630087 CAGGTTGGCGGCACCAGTCCTGCCAAC
1 CAGGTTGGCGGCACCAGTCCAGACAAC
*
4630114 CAGATTGGCGGCAC
1 CAGGTTGGCGGCAC
4630128 TACTCGTGTT
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.25, C:0.28, G:0.35, T:0.12
Consensus pattern (27 bp):
CAGGTTGGCGGCACCAGTCCAGACAAC
Found at i:4630429 original size:3 final size:3
Alignment explanation
Indices: 4630421--4630479 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
4630411 AATTTTATAG
4630421 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
4630469 TAT TAT TAT TA
1 TAT TAT TAT TA
4630480 AGGTATTAAG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:4633676 original size:15 final size:15
Alignment explanation
Indices: 4633652--4633690 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
4633642 CAATAAGCAC
*
4633652 AATAACTAAAACTAG
1 AATAATTAAAACTAG
*
4633667 AATAATT-AAATTAG
1 AATAATTAAAACTAG
4633681 AATAATTAAA
1 AATAATTAAA
4633691 TTGATACAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (15 bp):
AATAATTAAAACTAG
Found at i:4633683 original size:14 final size:14
Alignment explanation
Indices: 4633664--4633692 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
4633654 TAACTAAAAC
4633664 TAGAATAATTAAAT
1 TAGAATAATTAAAT
4633678 TAGAATAATTAAAT
1 TAGAATAATTAAAT
4633692 T
1 T
4633693 GATACAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (14 bp):
TAGAATAATTAAAT
Found at i:4636001 original size:16 final size:16
Alignment explanation
Indices: 4635980--4636018 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
4635970 TTAGTGTGTG
4635980 TTTTTTTTGTTTTTTA
1 TTTTTTTTGTTTTTTA
4635996 TTTTTTTTGTTTTTTA
1 TTTTTTTTGTTTTTTA
*
4636012 GTTTTTT
1 TTTTTTT
4636019 ATATATTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.05, C:0.00, G:0.08, T:0.87
Consensus pattern (16 bp):
TTTTTTTTGTTTTTTA
Found at i:4636019 original size:8 final size:8
Alignment explanation
Indices: 4635981--4636019 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
4635971 TAGTGTGTGT
*
4635981 TTTTTTTG
1 TTTTTTAG
*
4635989 TTTTTTAT
1 TTTTTTAG
*
4635997 TTTTTTTG
1 TTTTTTAG
4636005 TTTTTTAG
1 TTTTTTAG
4636013 TTTTTTA
1 TTTTTTA
4636020 TATATTTTGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.85
Consensus pattern (8 bp):
TTTTTTAG
Found at i:4636027 original size:24 final size:24
Alignment explanation
Indices: 4635981--4636028 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
4635971 TAGTGTGTGT
* * *
4635981 TTTTTTTGTTTTTTATTTTTTTTG
1 TTTTTTAGTTTTTTATATATTTTG
4636005 TTTTTTAGTTTTTTATATATTTTG
1 TTTTTTAGTTTTTTATATATTTTG
4636029 GTAAATAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.10, C:0.00, G:0.08, T:0.81
Consensus pattern (24 bp):
TTTTTTAGTTTTTTATATATTTTG
Found at i:4636048 original size:27 final size:29
Alignment explanation
Indices: 4636018--4636087 Score: 110
Period size: 28 Copynumber: 2.5 Consensus size: 29
4636008 TTTAGTTTTT
4636018 TATATATTTTGGTAAAT-AAAAAAA-TTA
1 TATATATTTTGGTAAATAAAAAAAAGTTA
*
4636045 TATATTTTTTGGTAAATAAAAAAAAGTTA
1 TATATATTTTGGTAAATAAAAAAAAGTTA
4636074 TA-ATATTTTGGTAA
1 TATATATTTTGGTAA
4636088 TTTTTTATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
27 16 0.41
28 18 0.46
29 5 0.13
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.43
Consensus pattern (29 bp):
TATATATTTTGGTAAATAAAAAAAAGTTA
Found at i:4636149 original size:19 final size:19
Alignment explanation
Indices: 4636125--4636176 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
4636115 TATAAAACCC
* *
4636125 ATAATAAAACATTACAAAA
1 ATAATAAAATATTAAAAAA
4636144 ATAATAAAATATTAAAAAA
1 ATAATAAAATATTAAAAAA
*
4636163 ATAACAAAATATTA
1 ATAATAAAATATTA
4636177 TATATTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (19 bp):
ATAATAAAATATTAAAAAA
Found at i:4636892 original size:10 final size:10
Alignment explanation
Indices: 4636879--4637029 Score: 59
Period size: 10 Copynumber: 15.1 Consensus size: 10
4636869 TCCTTCCCTC
4636879 TTCTTCTTCT
1 TTCTTCTTCT
* *
4636889 TTCTTTTTTTT
1 TTC-TTCTTCT
*
4636900 TCTCTTCTCCT
1 T-TCTTCTTCT
4636911 TTCCTT-TTCT
1 TT-CTTCTTCT
*
4636921 TTC--CTTAT
1 TTCTTCTTCT
4636929 TT-TTCTTTCT
1 TTCTTC-TTCT
* **
4636939 TTCCTCCCCT
1 TTCTTCTTCT
4636949 TTCCTT-TTCT
1 TT-CTTCTTCT
4636959 TTC--CTTCT
1 TTCTTCTTCT
4636967 TT-TTCTTTCT
1 TTCTTC-TTCT
* *
4636977 TTCCTCTCCTT
1 TTCTTCTTC-T
*
4636988 TTCTT-TTCC
1 TTCTTCTTCT
*
4636997 TTCTTTTTCT
1 TTCTTCTTCT
4637007 TTCTTCCTTTCT
1 TTCTT-C-TTCT
4637019 TTCTTCTTCT
1 TTCTTCTTCT
4637029 T
1 T
4637030 CCCCTCTCCT
Statistics
Matches: 102, Mismatches: 21, Indels: 36
0.64 0.13 0.23
Matches are distributed among these distances:
8 11 0.11
9 9 0.09
10 45 0.44
11 26 0.25
12 11 0.11
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (10 bp):
TTCTTCTTCT
Found at i:4636912 original size:22 final size:22
Alignment explanation
Indices: 4636880--4637000 Score: 77
Period size: 22 Copynumber: 6.0 Consensus size: 22
4636870 CCTTCCCTCT
* * *
4636880 TCTTCTTCTTTCTTTTTTTTTC
1 TCTTCTCCTTTCCTTTTCTTTC
4636902 TCTTCTCCTTTCCTTTTCTTTC
1 TCTTCTCCTTTCCTTTTCTTTC
* *
4636924 -CTTAT--TTTTC-TTTCTTTC
1 TCTTCTCCTTTCCTTTTCTTTC
*
4636942 -C-TCCCCTTTCCTTTTCTTTC
1 TCTTCTCCTTTCCTTTTCTTTC
*
4636962 -CTTCT--TTTTC-TTTCTTTC
1 TCTTCTCCTTTCCTTTTCTTTC
* *
4636980 -C-TCTCCTTTTCTTTTCCTTC
1 TCTTCTCCTTTCCTTTTCTTTC
4637000 T
1 T
4637001 TTTTCTTTCT
Statistics
Matches: 80, Mismatches: 11, Indels: 17
0.74 0.10 0.16
Matches are distributed among these distances:
17 4 0.05
18 18 0.22
19 17 0.21
20 16 0.20
21 6 0.08
22 19 0.24
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.67
Consensus pattern (22 bp):
TCTTCTCCTTTCCTTTTCTTTC
Found at i:4636915 original size:5 final size:5
Alignment explanation
Indices: 4636907--4636998 Score: 50
Period size: 5 Copynumber: 19.0 Consensus size: 5
4636897 TTTTCTCTTC
* * * *
4636907 TCCTT TCCTT TTCTT TCCTT AT--TT TTCTT T-CTT TCCTC CCCTT TCCTT
1 TCCTT TCCTT TCCTT TCCTT -TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT
* * * * *
4636955 TTCTT TCC-T TCTTT TTCTT T-CTT TCCTC TCCTTT TCTTT TCCTT
1 TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCC-TT TCCTT TCCTT
4636999 CTTTTTCTTT
Statistics
Matches: 65, Mismatches: 15, Indels: 14
0.69 0.16 0.15
Matches are distributed among these distances:
3 1 0.02
4 13 0.20
5 47 0.72
6 4 0.06
ACGTcount: A:0.01, C:0.34, G:0.00, T:0.65
Consensus pattern (5 bp):
TCCTT
Found at i:4636940 original size:28 final size:27
Alignment explanation
Indices: 4636888--4637023 Score: 73
Period size: 28 Copynumber: 4.9 Consensus size: 27
4636878 CTTCTTCTTC
4636888 TTTCTTT--TTTTTTCTCTTCTCCTTTCCT
1 TTTCTTTCCTTTTTT-TCTT-T-CTTTCCT
4636916 TTTCTTTCCTTATTTTTCTTTCTTTCCT
1 TTTCTTTCCTT-TTTTTCTTTCTTTCCT
*** * *
4636944 CCCCTTTCCTTTTCTTTCCTTCTTT-TT
1 TTTCTTTCCTTTT-TTTCTTTCTTTCCT
* * *
4636971 CTTTCTTTCCTCTCCTTTTCTTTTCCTTCTT
1 -TTTCTTTCCT-T-TTTTTC-TTTCTTTCCT
**
4637002 TTTCTTT-CTTCCTTTCTTTCTT
1 TTTCTTTCCTTTTTTTCTTTCTT
4637024 CTTCTTCCCC
Statistics
Matches: 86, Mismatches: 13, Indels: 20
0.72 0.11 0.17
Matches are distributed among these distances:
26 5 0.06
27 8 0.09
28 40 0.47
29 8 0.09
30 19 0.22
31 6 0.07
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (27 bp):
TTTCTTTCCTTTTTTTCTTTCTTTCCT
Found at i:4636950 original size:38 final size:38
Alignment explanation
Indices: 4636908--4637017 Score: 150
Period size: 38 Copynumber: 2.9 Consensus size: 38
4636898 TTTCTCTTCT
4636908 CCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCTCC
1 CCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCTCC
* *
4636946 CCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCT
1 CCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCTCC
* * * *
4636984 CCTTTTCTTTTCCTT-CTTTTTCTTTCTTCCTTTC
1 CCTTTCCTTTTCTTTCCTTATT-TTTCTTTCTTTC
4637018 TTTCTTCTTC
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
37 5 0.08
38 60 0.92
ACGTcount: A:0.01, C:0.34, G:0.00, T:0.65
Consensus pattern (38 bp):
CCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCTCC
Found at i:4636970 original size:14 final size:14
Alignment explanation
Indices: 4636953--4637026 Score: 55
Period size: 12 Copynumber: 5.1 Consensus size: 14
4636943 TCCCCTTTCC
4636953 TTTTCTTTCCTTCTTTT
1 TTTTCTTTCCTTC---T
*
4636970 TCTTTCTTTCCTCTCC
1 T-TTTCTTTCCT-TCT
4636986 TTTTCTTTTCCTTCT
1 TTTTC-TTTCCTTCT
4637001 TTTTCTTT-CTTC-
1 TTTTCTTTCCTTCT
*
4637013 CTTTCTTT-CTTCT
1 TTTTCTTTCCTTCT
4637026 T
1 T
4637027 CTTCCCCTCT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
12 11 0.22
13 4 0.08
14 3 0.06
15 11 0.22
16 7 0.14
17 1 0.02
18 10 0.20
19 2 0.04
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTCTTTCCTTCT
Found at i:4637027 original size:28 final size:31
Alignment explanation
Indices: 4636949--4637030 Score: 100
Period size: 33 Copynumber: 2.7 Consensus size: 31
4636939 TTCCTCCCCT
*
4636949 TTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCC
1 TTCCTTTTCTTT-CTTCTTCTTCTTTCTTTCC
*
4636981 TCTCCTTTTCTTT-TCCTTCTT-TTTCTTT-C
1 T-TCCTTTTCTTTCTTCTTCTTCTTTCTTTCC
4637010 TTCC-TTTCTTTCTTCTTCTTC
1 TTCCTTTTCTTTCTTCTTCTTC
4637031 CCCTCTCCTT
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
27 7 0.16
28 10 0.23
29 2 0.05
30 7 0.16
31 6 0.14
32 1 0.02
33 11 0.25
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (31 bp):
TTCCTTTTCTTTCTTCTTCTTCTTTCTTTCC
Found at i:4637183 original size:16 final size:16
Alignment explanation
Indices: 4637158--4637200 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
4637148 TCGGTTCAGG
4637158 TTTT-TTTTTTCTATT
1 TTTTATTTTTTCTATT
* *
4637173 TTTTATTTTTTTTGTT
1 TTTTATTTTTTCTATT
4637189 TTTTAGTTTTTT
1 TTTTA-TTTTTT
4637201 TATATATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 4 0.17
16 14 0.58
17 6 0.25
ACGTcount: A:0.07, C:0.02, G:0.05, T:0.86
Consensus pattern (16 bp):
TTTTATTTTTTCTATT
Found at i:4637201 original size:16 final size:16
Alignment explanation
Indices: 4637171--4637201 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4637161 TTTTTTTCTA
*
4637171 TTTTTTATTTTTTTTG
1 TTTTTTAGTTTTTTTG
4637187 TTTTTTAGTTTTTTT
1 TTTTTTAGTTTTTTT
4637202 ATATATTTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.06, C:0.00, G:0.06, T:0.87
Consensus pattern (16 bp):
TTTTTTAGTTTTTTTG
Found at i:4637230 original size:26 final size:28
Alignment explanation
Indices: 4637201--4637268 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
4637191 TTAGTTTTTT
4637201 TATATATTTTGGTAAAT-AAAAAA-TTA
1 TATATATTTTGGTAAATAAAAAAAGTTA
*
4637227 TATATTTTTTGGTAAATAAAAAAAGTTA
1 TATATATTTTGGTAAATAAAAAAAGTTA
4637255 TA-ATATTTTGGTAA
1 TATATATTTTGGTAA
4637269 TTTTTTATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 16 0.42
27 17 0.45
28 5 0.13
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (28 bp):
TATATATTTTGGTAAATAAAAAAAGTTA
Found at i:4638028 original size:313 final size:315
Alignment explanation
Indices: 4637305--4638035 Score: 976
Period size: 318 Copynumber: 2.3 Consensus size: 315
4637295 TAAAAAACCC
*
4637305 TATAATCTAGCTTAATCATTAGTAAAA-TCTTAATTACATTATACAAGAAAACTAAACCTCCAAC
1 TATAATTTAGCTTAATCATTAGTAAAACT-TTAATTACATTATA-AAGAAAACTAAACCTCCAAC
* * * *
4637369 TATACCAAAAATAACATCCTTAACGTCACATGATAAGTTCGATATTTAAATTTTACAAGTCCATG
64 TATACCAAAAATAACATCCATAACATCACATGATAAGTTCGAAATTCAAATTTTACAAGTCCATG
* *
4637434 GATAACATTCATCATTTCACCTTCAATTATACTATTTTTCTCATTTTGATAATCCAGGTTATTTA
129 GATAACATTCATCATTTCACCTTCAATTATACTATTTTTCTCATTTTCATAATCCA-G-AATTTA
* *
4637499 TGACTGCCTTACCAACAATGTCGTCTCCAACATTCGTACCTCCCAAAATTGATAAATATTGACTA
192 TGACTACCTTACCAACAATGTCGTCTCCAACATTCGTACCTCCCAAAATCGATAAATATTGACTA
**
4637564 AATGAAACATAACTTTAGATATAAAAGTGGTTAAAAAAACTAACACAATAAGAAAACGG
257 AATGAAACATAACTTTAGATATAAAAGTGGTTAAAAAAACTAACACAATAAGAAAAAAG
* ** * * *
4637623 TATAATTTAGCTTAATTATTAAAAAAAGC-TTAATCACATTATAAAAGAAAACTACACCTCCAAT
1 TATAATTTAGCTTAATCATTAGTAAAA-CTTTAATTACATTAT-AAAGAAAACTAAACCTCCAAC
4637687 TATACCAAAAATAACATCCATAACATCACATGATAAGTTCGAAATTCAAATTTTACAAGTCCATG
64 TATACCAAAAATAACATCCATAACATCACATGATAAGTTCGAAATTCAAATTTTACAAGTCCATG
* ** * *
4637752 GATAACATTCATTATTTCGTCTTCAATTATACCTTTTTTTCTCGTTTTCATAATCCA-AATTTAT
129 GATAACATTCATCATTTCACCTTCAATTATA-CTATTTTTCTCATTTTCATAATCCAGAATTTAT
* * * *
4637816 GACTACAC-TACCAACAATGTTGTTTGCAACATTCGTACCTCCCCTAAATCGAT-AA-A-TGACT
193 GACTAC-CTTACCAACAATGTCGTCTCCAACATTCGTACCT-CCCAAAATCGATAAATATTGACT
* ** *
4637877 AAATGAAA-AGTAACTTTAGATATCAAAGTGGTTTTAAAAATTAACACAATAA-AAAAAAG
256 AAATGAAACA-TAACTTTAGATATAAAAGTGGTTAAAAAAACTAACACAATAAGAAAAAAG
* * *
4637936 TATAATTTAGCTTAATCATTAGTAAAACTTTAATTATATTATAATAGAAAACTAAACTTCTAACT
1 TATAATTTAGCTTAATCATTAGTAAAACTTTAATTACATTATAA-AGAAAACTAAACCTCCAACT
* * *
4638001 ATACCAAAAATAACATCGAAAACATCACATAATAA
65 ATACCAAAAATAACATCCATAACATCACATGATAA
4638036 TGTCATTTTT
Statistics
Matches: 362, Mismatches: 42, Indels: 23
0.85 0.10 0.05
Matches are distributed among these distances:
312 3 0.01
313 89 0.25
314 51 0.14
315 1 0.00
316 42 0.12
317 11 0.03
318 142 0.39
319 23 0.06
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (315 bp):
TATAATTTAGCTTAATCATTAGTAAAACTTTAATTACATTATAAAGAAAACTAAACCTCCAACTA
TACCAAAAATAACATCCATAACATCACATGATAAGTTCGAAATTCAAATTTTACAAGTCCATGGA
TAACATTCATCATTTCACCTTCAATTATACTATTTTTCTCATTTTCATAATCCAGAATTTATGAC
TACCTTACCAACAATGTCGTCTCCAACATTCGTACCTCCCAAAATCGATAAATATTGACTAAATG
AAACATAACTTTAGATATAAAAGTGGTTAAAAAAACTAACACAATAAGAAAAAAG
Found at i:4647341 original size:20 final size:20
Alignment explanation
Indices: 4647316--4647357 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
4647306 AAAAACTAAG
4647316 AAAATAGTATAATTTAGCTT
1 AAAATAGTATAATTTAGCTT
4647336 AAAATAGTATAATTTAGCTT
1 AAAATAGTATAATTTAGCTT
4647356 AA
1 AA
4647358 TCATTAGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.38
Consensus pattern (20 bp):
AAAATAGTATAATTTAGCTT
Found at i:4647374 original size:18 final size:19
Alignment explanation
Indices: 4647351--4647389 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
4647341 AGTATAATTT
4647351 AGCTTAA-T-CATTAGTAAA
1 AGCTTAATTACATTA-TAAA
4647369 AGCTTAATTACATTATAAA
1 AGCTTAATTACATTATAAA
4647388 AG
1 AG
4647390 AAAACTAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.37
19 7 0.37
20 5 0.26
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.33
Consensus pattern (19 bp):
AGCTTAATTACATTATAAA
Found at i:4647736 original size:312 final size:308
Alignment explanation
Indices: 4647341--4648064 Score: 1042
Period size: 312 Copynumber: 2.3 Consensus size: 308
4647331 AGCTTAAAAT
4647341 AGTATAATTTAGCTTAATCATTAGTAAAAGCTTAATTACATTATAAAAGAAAACTAAACCTCCAA
1 AGTATAATTTAGCTTAATCATTAGTAAAAGCTTAATTACATTAT-AAAGAAAACTAAACCTCCAA
* *
4647406 CTATACCAAAAATAACATCCATAACATCACATGATAAGTTCAAAATTCAAATTTTACAAGTCCAT
65 TTATACCAAAAATAACATCCATAACATCACATGATAAGTTCAAAATTCAAATTTCACAAGTCCAT
* *
4647471 GGATAACATTCATCATTTCACCTTCAATTATACTATTTTTCTCATTTTGATAATCCAGGTTTATA
130 GGATAACATTCATCATTTCGCCTTCAATTATACTATTTTTCTCATTTTCATAATCCAGGTTTATA
* * *
4647536 CCTGCCCTACCAACAATGTCGTCTCCAACAGTCGTACCTCCCCTCAATTGATAAATGACTAAATG
195 -CTGCCCTACCAACAATGTCGTCTCCAACATTCGTACCTCCCCTAAATCGATAAATGACTAAATG
*
4647601 AAATGTAACTTTAGATATAAAAGTGGTTAAAAAATTAACACAATAAGAAA
259 AAATGTAACTTTAGATATCAAAGTGGTTAAAAAATTAACACAATAAGAAA
4647651 ACGGTATAATTTAGCTTAATCATTAG-AAAAGGCTTAATTACATTATAAAGGAAAACTAAACCTC
1 A--GTATAATTTAGCTTAATCATTAGTAAAA-GCTTAATTACATTATAAA-GAAAACTAAACCTC
** *
4647715 CAATTATACCAAAAATAACATCCATAACATCACATGATAAGTTTGAAATTCAAATTTCACAATTC
62 CAATTATACCAAAAATAACATCCATAACATCACATGATAAGTTCAAAATTCAAATTTCACAAGTC
* * **
4647780 CTTGGATAACATTCATCATTTTGCCTTCAATTATACT-TCTTTTCTCATTTTCATAATCCAAATT
127 CATGGATAACATTCATCATTTCGCCTTCAATTATACTAT-TTTTCTCATTTTCATAATCCAGGTT
* * * * * * *
4647844 TAAGACTACTCTACCAACAATGTTGTCTCCAACATTTGTACCTCCCCTAAACCAATAAATGACTA
191 T-ATACTGCCCTACCAACAATGTCGTCTCCAACATTCGTACCTCCCCTAAATCGATAAATGACTA
* * *
4647909 AATCAAAAGTAACTTTAGATATCAAAGTGGTTTTAAAAATTAACACAATAA-AAA
255 AATGAAATGTAACTTTAGATATCAAAGTGG-TTAAAAAATTAACACAATAAGAAA
* * * *
4647963 AGTACAATTTAGCTTAATCATTAGTAAAA-CTTTAATTATATTATAATACAAAACTAAACTTCCA
1 AGTATAATTTAGCTTAATCATTAGTAAAAGC-TTAATTACATTATAA-AGAAAACTAAACCTCCA
* *
4648027 ATTATACCAAAAATAACATCGATAACATCACATAATAA
64 ATTATACCAAAAATAACATCCATAACATCACATGATAA
4648065 TGTCATTTTT
Statistics
Matches: 373, Mismatches: 31, Indels: 20
0.88 0.07 0.05
Matches are distributed among these distances:
309 1 0.00
310 87 0.23
311 13 0.03
312 251 0.67
313 21 0.06
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.32
Consensus pattern (308 bp):
AGTATAATTTAGCTTAATCATTAGTAAAAGCTTAATTACATTATAAAGAAAACTAAACCTCCAAT
TATACCAAAAATAACATCCATAACATCACATGATAAGTTCAAAATTCAAATTTCACAAGTCCATG
GATAACATTCATCATTTCGCCTTCAATTATACTATTTTTCTCATTTTCATAATCCAGGTTTATAC
TGCCCTACCAACAATGTCGTCTCCAACATTCGTACCTCCCCTAAATCGATAAATGACTAAATGAA
ATGTAACTTTAGATATCAAAGTGGTTAAAAAATTAACACAATAAGAAA
Found at i:4648567 original size:42 final size:42
Alignment explanation
Indices: 4648508--4648594 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
4648498 AAAATTGAAT
4648508 CTATAAAACAACCTTGGACCAGAAAGGTTGCTAGCATTGGAA
1 CTATAAAACAACCTTGGACCAGAAAGGTTGCTAGCATTGGAA
4648550 CTATAAAACAACCTTGGACCAGAAAGGTTGCTAGCATTGGAA
1 CTATAAAACAACCTTGGACCAGAAAGGTTGCTAGCATTGGAA
4648592 CTA
1 CTA
4648595 GTGTTGCTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.22
Consensus pattern (42 bp):
CTATAAAACAACCTTGGACCAGAAAGGTTGCTAGCATTGGAA
Found at i:4651636 original size:21 final size:21
Alignment explanation
Indices: 4651597--4651661 Score: 69
Period size: 23 Copynumber: 2.9 Consensus size: 21
4651587 AAAAAATGCT
4651597 CTTTTATCATCAT-TTATTTTAA
1 CTTTTAT-AT-ATATTATTTTAA
4651619 CTTTTATATATATTATTTATTTTAA
1 C-TTT-TATATA-TA-TTATTTTAA
4651644 CTTTTATATATATTATTT
1 CTTTTATATATATTATTT
4651662 ATTTTAAGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
21 6 0.16
22 4 0.11
23 12 0.32
24 6 0.16
25 10 0.26
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (21 bp):
CTTTTATATATATTATTTTAA
Found at i:4651639 original size:25 final size:25
Alignment explanation
Indices: 4651608--4651734 Score: 137
Period size: 26 Copynumber: 5.0 Consensus size: 25
4651598 TTTTATCATC
4651608 ATTTATTTTAACTTTTATATATATT
1 ATTTATTTTAACTTTTATATATATT
4651633 ATTTATTTTAACTTTTATATATATT
1 ATTTATTTTAACTTTTATATATATT
* * * *
4651658 ATTTATTTTAAGTTGTTTTACATAGT
1 ATTTATTTTAACTT-TTATATATATT
* * * *
4651684 ATTTATTTAAATTTCTTTTATATGTT
1 ATTTATTTTAACTT-TTATATATATT
* *
4651710 ATTTATTCTAAACTATTATATATAT
1 ATTTATT-TTAACTTTTATATATAT
4651735 ATCTTTCAAA
Statistics
Matches: 86, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
25 38 0.44
26 43 0.50
27 5 0.06
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (25 bp):
ATTTATTTTAACTTTTATATATATT
Found at i:4651731 original size:26 final size:25
Alignment explanation
Indices: 4651608--4651784 Score: 131
Period size: 25 Copynumber: 7.4 Consensus size: 25
4651598 TTTTATCATC
*
4651608 ATTTATTTTAACTTTTATATATATT
1 ATTTATTTAAACTTTTATATATATT
*
4651633 ATTTATTTTAACTTTTATATATATT
1 ATTTATTTAAACTTTTATATATATT
* * * * *
4651658 ATTTATTTTAAGTTGTTTTACATAGT
1 ATTTATTTAAACTT-TTATATATATT
* * *
4651684 ATTTATTTAAATTTCTTTTATATGTT
1 ATTTATTTAAACTT-TTATATATATT
*
4651710 ATTTATTCTAAACTATTATATATA-T
1 ATTTATT-TAAACTTTTATATATATT
* *
4651735 ATCT-TTCAAA--TTTATATATATT
1 ATTTATTTAAACTTTTATATATATT
*
4651757 -TTTA---AAACTTTT-TATATGTT
1 ATTTATTTAAACTTTTATATATATT
4651777 ATTT-TTTA
1 ATTTATTTA
4651785 TTATTTATTT
Statistics
Matches: 123, Mismatches: 19, Indels: 22
0.75 0.12 0.13
Matches are distributed among these distances:
19 3 0.02
20 7 0.06
21 17 0.14
22 1 0.01
23 4 0.03
24 2 0.02
25 42 0.34
26 42 0.34
27 5 0.04
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.60
Consensus pattern (25 bp):
ATTTATTTAAACTTTTATATATATT
Found at i:4651914 original size:17 final size:17
Alignment explanation
Indices: 4651888--4651921 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
4651878 CTTACAAATC
*
4651888 ATTTATTTTAAACTATT
1 ATTTACTTTAAACTATT
*
4651905 ATTTACTTTAAATTATT
1 ATTTACTTTAAACTATT
4651922 TTACATATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTACTTTAAACTATT
Found at i:4652505 original size:19 final size:19
Alignment explanation
Indices: 4652483--4652519 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
4652473 AAAATATTTC
*
4652483 AAAAAAAGGAAAAGAAAAA
1 AAAAAAAGAAAAAGAAAAA
*
4652502 AAAAAGAGAAAAAGAAAA
1 AAAAAAAGAAAAAGAAAA
4652520 GGAAAGATGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (19 bp):
AAAAAAAGAAAAAGAAAAA
Found at i:4653676 original size:143 final size:141
Alignment explanation
Indices: 4653418--4653873 Score: 568
Period size: 143 Copynumber: 3.2 Consensus size: 141
4653408 ATCATGGTGA
* * *
4653418 ATCTTAT-TTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGTCTTATCTTCTTGAAGTTG
1 ATCTTATCTT-CCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAG-CTTATCTCCCTGAAGTTG
* * *
4653482 CAGCGAAGCAGACTAAAGACAGCGAATCTTATTTCCCTGGCGTT-ACAGTGGAACAGATTAAAGC
64 CAGCGGAGCAGACTAAAGACAGTGAATCTTATTT-CCTGGAGTTGA-AGTGGAACAGATTAAAGC
4653546 TACAAATTATGGCGG
127 TACAAATTATGGCGG
* *
4653561 ATCTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACCAGCTTAATCTCCCTGCAGTTGC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCTT-ATCTCCCTGAAGTTGC
* *
4653626 AGCGGAGCAGACTAAAGACAGTGAATCTTATTTCTCTGGTGTTGAAGTGGAACAGATTAAATCTA
65 AGCGGAGCAGACTAAAGACAGTGAATCTTATTTC-CTGGAGTTGAAGTGGAACAGATTAAAGCTA
4653691 CAAATTATGGCGG
129 CAAATTATGGCGG
* * * * *
4653704 ATGTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAGC--CTTACCTCCCTAAAGTTGAA
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCTTATCTCCCTGAAGTTGCA
* * * * * *
4653767 GCGGAGCAAACTGAAGACAGTAAATCTTATTTCCTTGAAGTTGCAGTGGAACAGATTAAAGCTAT
66 GCGGAGCAGACTAAAGACAGTGAATCTTATTTCC-TGGAGTTGAAGTGGAACAGATTAAAGCTAC
*
4653832 AAATTA---CGA
130 AAATTATGGCGG
**
4653841 ATCTTATC-TCTCTGAAGTTGCAGTAAAGCAGAT
1 ATCTTATCTTC-CTGAAGTTGCAGTGGAGCAGAT
4653874 CATATCAAAC
Statistics
Matches: 279, Mismatches: 28, Indels: 18
0.86 0.09 0.06
Matches are distributed among these distances:
136 2 0.01
137 29 0.10
139 1 0.00
140 74 0.27
141 3 0.01
142 4 0.01
143 163 0.58
144 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (141 bp):
ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCTTATCTCCCTGAAGTTGCA
GCGGAGCAGACTAAAGACAGTGAATCTTATTTCCTGGAGTTGAAGTGGAACAGATTAAAGCTACA
AATTATGGCGG
Found at i:4655573 original size:26 final size:26
Alignment explanation
Indices: 4655524--4655592 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 26
4655514 AGTTTTATAT
* * *
4655524 ATATTATTTATTTTAAGCTGTTTTGC
1 ATATTATTTATTTAAAGCTCTTTTAC
** *
4655550 ATATTATTTATTTAAATTTCTTTTAT
1 ATATTATTTATTTAAAGCTCTTTTAC
*
4655576 ATGTTATTTATTGTAAA
1 ATATTATTTATT-TAAA
4655593 CTATTATATA
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
26 31 0.89
27 4 0.11
ACGTcount: A:0.29, C:0.04, G:0.07, T:0.59
Consensus pattern (26 bp):
ATATTATTTATTTAAAGCTCTTTTAC
Found at i:4655633 original size:19 final size:19
Alignment explanation
Indices: 4655609--4655646 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
4655599 TATATATATA
*
4655609 TATATATATCTTTCAAATT
1 TATATATATATTTCAAATT
*
4655628 TATATATATATTTTAAATT
1 TATATATATATTTCAAATT
4655647 GTTTTATATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (19 bp):
TATATATATATTTCAAATT
Found at i:4655655 original size:21 final size:21
Alignment explanation
Indices: 4655607--4655646 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
4655597 TATATATATA
4655607 TATATATATATCTTTCAAATT
1 TATATATATATCTTTCAAATT
4655628 TATATATATAT-TTT-AAATT
1 TATATATATATCTTTCAAATT
4655647 GTTTTATATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 3 0.16
21 11 0.58
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (21 bp):
TATATATATATCTTTCAAATT
Found at i:4659313 original size:99 final size:98
Alignment explanation
Indices: 4659142--4659441 Score: 302
Period size: 99 Copynumber: 3.0 Consensus size: 98
4659132 GCTCATCTTC
* * * * * * * * *
4659142 GAGGCTACTTCCAACATGACCGTT-AAGTGTTTTTTCTTGAAGTGAGTTAACCTTACCCTCCAAG
1 GAGGCTACTTCCAATATGACCGTTAAATTG-ATTTGCTTCAACTAAGTTAACCCTACACTCCAAG
*
4659206 TAAACCGATTTAGCTATATAAACTCCATCTTTTGG
65 TAAACCGATTAAGCT-TATAAACTCCATCTTTTGG
* ** *
4659241 GAGGCTACTTCCAATATGACCGTTGAGATT-A-TTGAACTT-AACTAAGTTAACCCTACGTTTCA
1 GAGGCTACTTCCAATATGACCGTT-AAATTGATTTG--CTTCAACTAAGTTAACCCTACACTCCA
* * * *
4659303 AGTAAACCGATTGAGTTGTATATACTCCATCTTCTGG
63 AGTAAACCGATTAAGCT-TATAAACTCCATCTTTTGG
* * * * *
4659340 AAGGCTACTTCCAATATGACTGTTAAATTGATTTGCTTCAACTGAGTTAACCCTGCACTCCGAGT
1 GAGGCTACTTCCAATATGACCGTTAAATTGATTTGCTTCAACTAAGTTAACCCTACACTCCAAGT
4659405 AAACCGATTAAGTCTTATAAACTCCATCTTTTGG
66 AAACCGATTAAG-CTTATAAACTCCATCTTTTGG
4659439 GAG
1 GAG
4659442 CATTTCTTCC
Statistics
Matches: 163, Mismatches: 30, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
98 9 0.06
99 145 0.89
100 7 0.04
101 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (98 bp):
GAGGCTACTTCCAATATGACCGTTAAATTGATTTGCTTCAACTAAGTTAACCCTACACTCCAAGT
AAACCGATTAAGCTTATAAACTCCATCTTTTGG
Found at i:4661598 original size:32 final size:31
Alignment explanation
Indices: 4661541--4661604 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 31
4661531 GAAGATCAAT
* *
4661541 AAAAAGATAAAATTATGTATATATATATTTA
1 AAAAAAATAAAATAATGTATATATATATTTA
*
4661572 AAAAAAATAAAA-AATGTATA-AGTATATATA
1 AAAAAAATAAAATAATGTATATA-TATATTTA
4661602 AAA
1 AAA
4661605 TATGAAGTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 1 0.03
30 17 0.59
31 11 0.38
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (31 bp):
AAAAAAATAAAATAATGTATATATATATTTA
Found at i:4663589 original size:134 final size:133
Alignment explanation
Indices: 4663407--4663795 Score: 487
Period size: 134 Copynumber: 2.9 Consensus size: 133
4663397 GCCAATACAT
* * * * *
4663407 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCGGTATTGGAAGACCAGACCTGCTT-TC
1 GAAGACAAGATCTG-TTTCTTTGATCTACTTAGCCACCAGTATGGGAAGACAAGACCTG-TTATC
4663471 TTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAG
64 TTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAG
4663536 TATGG
129 TATGG
*
4663541 GAAGACAAGATCTGTTGTCTTTGATCTACTTAGCCACCAGTATGGGAAGACAAGATCTGTTATCT
1 GAAGACAAGATCTGTT-TCTTTGATCTACTTAGCCACCAGTATGGGAAGACAAGACCTGTTATCT
*
4663606 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGT
65 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGT
4663671 ATGG
130 ATGG
* * *** * *
4663675 GAAGACAAGATCTGGTATCTTTGATCTACTT--CACGCCAGTACATGAAGACAAGATCTGTTTTC
1 GAAGACAAGATCT-GTTTCTTTGATCTACTTAGC-CACCAGTATGGGAAGACAAGACCTGTTATC
* * * * *** * * *
4663738 TTCGAACTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCTTTGATCTACTTC
64 TTTGATCTACTTC-ACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
4663796 ACGCCAATAC
Statistics
Matches: 227, Mismatches: 23, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
132 1 0.00
133 40 0.18
134 184 0.81
135 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (133 bp):
GAAGACAAGATCTGTTTCTTTGATCTACTTAGCCACCAGTATGGGAAGACAAGACCTGTTATCTT
TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTA
TGG
Found at i:4663658 original size:178 final size:179
Alignment explanation
Indices: 4663333--4663829 Score: 596
Period size: 178 Copynumber: 2.8 Consensus size: 179
4663323 ATAAGACTTG
*
4663333 TATCTTCGATCTACTTCGCCACC-GATATGGGAAGACAAGATCTGTTGTCTTTGGTCTACTTCAC
1 TATCTTCGATCTACTTCGCCACCAG-TATGGGAAGACAAGATCTGTTGTCTTTGATCTACTT-A-
*** * * * * *
4663397 GCCA--A-TACATGAAGACAAGATCTGCTT-TCTTCGATCTACTTCGCCACCGGTA-TTGGAAGA
63 GCCACCAGTATGGGAAGACAAGATCTG-TTATCTTTGATCTACTTC-ACGCCAGTACAT-GAAGA
* * * * * *
4663457 CCAGACCTGCTTTCTTTGATCTACTTC-ACGCCAGTACATGAAGACAAGATCTGC
125 CAAGATCTGTTTTCTTCGATCTACTTCGACACCAGTACAGGAAGACAAGATCTGC
*
4663511 TTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTGTCTTTGATCTACTTAGCC
1 TATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTGTCTTTGATCTACTTAGCC
4663576 ACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGAT
66 ACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGAT
* ** *
4663641 CTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGG
131 CTGTTTTCTTCGATCTACTTCGACACCAGTACAGGAAGACAAGATCTGC
* * * *** * * * *
4663690 TATCTTTGATCTACTTC-ACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGAACTACTTCGCC
1 TATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTGTCTTTGATCTACTTAGCC
* *
4663754 ACCAGTATGGGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGAT
66 ACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGAT
4663819 CTGTTTTCTTC
131 CTGTTTTCTTC
4663830 CTAGCCTACT
Statistics
Matches: 279, Mismatches: 33, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
176 4 0.01
177 1 0.00
178 206 0.74
179 68 0.24
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (179 bp):
TATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTGTCTTTGATCTACTTAGCC
ACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGAT
CTGTTTTCTTCGATCTACTTCGACACCAGTACAGGAAGACAAGATCTGC
Found at i:4663728 original size:223 final size:223
Alignment explanation
Indices: 4663332--4663794 Score: 766
Period size: 223 Copynumber: 2.1 Consensus size: 223
4663322 GATAAGACTT
* * * *
4663332 GTATCTTCGATCTACTTCGCCACCGATATGGGAAGACAAGATCTGTTGTCTTTGGTCTACTTCAC
1 GTATCTTTGATCTACTTAGCCACCGATATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCAC
* * *
4663397 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCGGTATTGGAAGACCAGA
66 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGA
* *
4663462 CCTGCTTTCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTT
131 CCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGAACTACTT
4663527 CGCCACCAGTATGGGAAGACAAGATCTG
196 CGCCACCAGTATGGGAAGACAAGATCTG
* *
4663555 TTGTCTTTGATCTACTTAGCCACC-AGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCA
1 GTATCTTTGATCTACTTAGCCACCGA-TATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCA
* *
4663619 CGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
65 CGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
* * *
4663684 ATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGAACTACT
130 ACCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGAACTACT
4663749 TCGCCACCAGTATGGGAAGACAAGATCTG
195 TCGCCACCAGTATGGGAAGACAAGATCTG
4663778 GTATCTTTGATCTACTT
1 GTATCTTTGATCTACTT
4663795 CACGCCAATA
Statistics
Matches: 221, Mismatches: 18, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
222 1 0.00
223 220 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (223 bp):
GTATCTTTGATCTACTTAGCCACCGATATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCAC
GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGA
CCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGAACTACTT
CGCCACCAGTATGGGAAGACAAGATCTG
Found at i:4663796 original size:89 final size:89
Alignment explanation
Indices: 4663363--4663829 Score: 535
Period size: 89 Copynumber: 5.2 Consensus size: 89
4663353 ACCGATATGG
* * * * * * *** * *
4663363 GAAGACAAGATCTGTTGTCTTTGGTCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCT
* * * * *
4663427 TCGATCTACTTCGCCACCGGTA-TT
66 TTGATCTACTTC-ACGCCAGTACAT
* * * * * * *** * *
4663451 GGAAGACCAGACCTGCTTTCTTTGATCTACTTC-ACGCCAGTACATGAAGACAAGATCTGCTTTC
1 -GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTATC
* * * ***
4663515 TTCGATCTACTTCGCCACCAGTATGG
65 TTTGATCTACTTC-ACGCCAGTACAT
* * * *
4663541 GAAGACAAGATCTGTTGTCTTTGATCTACTTAGCCACCAGTATGGGAAGACAAGATCTGTTATCT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCT
4663606 TTGATCTACTTCACGCCAGTACAT
66 TTGATCTACTTCACGCCAGTACAT
4663630 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCT
4663695 TTGATCTACTTCACGCCAGTACAT
66 TTGATCTACTTCACGCCAGTACAT
*
4663719 GAAGACAAGATCTGTTTTCTTCGAACTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCT
*
4663784 TTGATCTACTTCACGCCAATACAT
66 TTGATCTACTTCACGCCAGTACAT
4663808 GAAGACAAGATCTGTTTTCTTC
1 GAAGACAAGATCTGTTTTCTTC
4663830 CTAGCCTACT
Statistics
Matches: 343, Mismatches: 33, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
89 307 0.90
90 36 0.10
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (89 bp):
GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCT
TTGATCTACTTCACGCCAGTACAT
Found at i:4664727 original size:13 final size:13
Alignment explanation
Indices: 4664709--4664733 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4664699 AAATTGTCAA
4664709 GGATAACAAAGAT
1 GGATAACAAAGAT
4664722 GGATAACAAAGA
1 GGATAACAAAGA
4664734 AATTGATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.24, T:0.12
Consensus pattern (13 bp):
GGATAACAAAGAT
Found at i:4665114 original size:7 final size:7
Alignment explanation
Indices: 4665094--4665138 Score: 56
Period size: 7 Copynumber: 6.3 Consensus size: 7
4665084 TTAGCCTCTC
4665094 CATTTTT
1 CATTTTT
*
4665101 ACTTTTTT
1 -CATTTTT
4665109 CATTTTT
1 CATTTTT
4665116 CA-TTTT
1 CATTTTT
4665122 CATCTTTT
1 CAT-TTTT
4665130 CATTTTT
1 CATTTTT
4665137 CA
1 CA
4665139 CATCACTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
6 6 0.18
7 14 0.42
8 13 0.39
ACGTcount: A:0.16, C:0.18, G:0.00, T:0.67
Consensus pattern (7 bp):
CATTTTT
Found at i:4665150 original size:21 final size:22
Alignment explanation
Indices: 4665101--4665150 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
4665091 CTCCATTTTT
**
4665101 ACTTTTTTCATTTTTCATTTTC
1 ACTTTTTTCATTTTTCATCATC
*
4665123 A-TCTTTTCATTTTTCA-CATC
1 ACTTTTTTCATTTTTCATCATC
4665143 ACTTTTTT
1 ACTTTTTT
4665151 TTTGGACTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 3 0.13
21 19 0.83
22 1 0.04
ACGTcount: A:0.16, C:0.20, G:0.00, T:0.64
Consensus pattern (22 bp):
ACTTTTTTCATTTTTCATCATC
Found at i:4668051 original size:19 final size:19
Alignment explanation
Indices: 4668011--4668052 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
4668001 ATAATCTTTG
* *
4668011 ATGCATATGATGTAATGTA
1 ATGCAAATGATGAAATGTA
4668030 ATGCAAATGCATGAAATG-A
1 ATGCAAATG-ATGAAATGTA
4668049 ATGC
1 ATGC
4668053 GAAAAGAGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (19 bp):
ATGCAAATGATGAAATGTA
Found at i:4669850 original size:32 final size:31
Alignment explanation
Indices: 4669793--4669856 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 31
4669783 ATAAAAAAAT
* *
4669793 AAAAAGATAAAATTATGTATATATATATTTA
1 AAAAAAATAAAATAATGTATATATATATTTA
*
4669824 AAAAAAATAAAA-AATGTATA-AGTATATATA
1 AAAAAAATAAAATAATGTATATA-TATATTTA
4669854 AAA
1 AAA
4669857 TATGAAGTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 1 0.03
30 17 0.59
31 11 0.38
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (31 bp):
AAAAAAATAAAATAATGTATATATATATTTA
Found at i:4669941 original size:2 final size:2
Alignment explanation
Indices: 4669934--4669987 Score: 56
Period size: 2 Copynumber: 27.0 Consensus size: 2
4669924 TTATAAAAGT
* * * *
4669934 TA TA TA TA TA T- TA TA TA AA GA AA TA TG TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4669975 TA TA TA CTA TA TA
1 TA TA TA -TA TA TA
4669988 AGAAATGCGT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
1 1 0.02
2 41 0.93
3 2 0.05
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (2 bp):
TA
Found at i:4671205 original size:16 final size:16
Alignment explanation
Indices: 4671184--4671225 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
4671174 AATAATTTGA
*
4671184 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
4671200 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
4671216 TAGTTTTAAT
1 TAATTTTAAT
4671226 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:4671209 original size:22 final size:22
Alignment explanation
Indices: 4671199--4671259 Score: 77
Period size: 22 Copynumber: 2.8 Consensus size: 22
4671189 TTACTAACAA
* * *
4671199 TTAATTTTAATAACAATTAGTT
1 TTAATTTTAATAAAAAATAATT
*
4671221 TTAATTTTATTAAAAAATAATT
1 TTAATTTTAATAAAAAATAATT
*
4671243 TTAATTTTAATTAAAAA
1 TTAATTTTAATAAAAAA
4671260 CGGGCCGGGC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (22 bp):
TTAATTTTAATAAAAAATAATT
Found at i:4680971 original size:15 final size:16
Alignment explanation
Indices: 4680951--4680980 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
4680941 AATTGAATTA
4680951 ATTTTTAA-ATAAAAT
1 ATTTTTAATATAAAAT
4680966 ATTTTTAATATAAAA
1 ATTTTTAATATAAAA
4680981 AATTCATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTTTTAATATAAAAT
Found at i:4685123 original size:90 final size:86
Alignment explanation
Indices: 4685029--4685284 Score: 212
Period size: 88 Copynumber: 2.9 Consensus size: 86
4685019 TTTGAATAAG
* *
4685029 TAATAGTACTCAAAAATTTAAATTTACAGATACAATAAAATACAAACATTCTACAATATTAATAC
1 TAATAGTACT-AAAAA-TTAAATTTACACATACAAAAAAATACAAACATTCTA-AA-ATTAATAC
*
4685094 ACAAAAATATAAAATTCAAAAAAAA
62 ACGAAAATATAAAATTCAAAAAAAA
* * ** * * **
4685119 TAATACGCACT--AAATTAAATTTAAACACCCAACAAACTACAAACAGATGGGTAAAATTAATAC
1 TAATA-GTACTAAAAATTAAATTTACACATACAAAAAAATACAAAC--AT-TCTAAAATTAATAC
* * ** *
4685182 ACGAAAATTTTAAATTCAAACTACA
62 ACGAAAATATAAAATTCAAAAAAAA
* * *
4685207 T-ATAATACGGAATAAATTAAATTTACATATACAAAAAAATACAAACATTCTAAGAAATTAATAC
1 TAATAGTAC-TAA-AAATTAAATTTACACATACAAAAAAATACAAACATTCT-A-AAATTAATAC
4685271 ACGAAAATATAAAA
62 ACGAAAATATAAAA
4685285 ATGAAACCTT
Statistics
Matches: 128, Mismatches: 28, Indels: 21
0.72 0.16 0.12
Matches are distributed among these distances:
86 2 0.02
87 28 0.22
88 34 0.27
89 26 0.20
90 34 0.27
91 4 0.03
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.25
Consensus pattern (86 bp):
TAATAGTACTAAAAATTAAATTTACACATACAAAAAAATACAAACATTCTAAAATTAATACACGA
AAATATAAAATTCAAAAAAAA
Found at i:4686051 original size:108 final size:108
Alignment explanation
Indices: 4685918--4686122 Score: 306
Period size: 110 Copynumber: 1.9 Consensus size: 108
4685908 TGCCAGCCGA
* *
4685918 CACCCAATTTTTTTTAAATACACTGGTGCCGGCCATCAGTGTTCCAAAAT-AAAAAAA-TGCATT
1 CACCCAATTTTTTTTAAATACACTGGTGCCGACCATCAGTGTCCCAAAATAAAAAAAAGTGCATT
* *
4685981 GGAAGCCGAAAATTGTACTTGGTGCCGGCCATGTAATGGTCGC
66 GGAAGCCGAAAATTATACCTGGTGCCGGCCATGTAATGGTCGC
* * *
4686024 CACCCAATTTTTTTTTAAAATATACTGGTGCCGACCATTAGTGTCCCAAAGTAAAAAAAAGTGCA
1 CACCCAA-TTTTTTTT-AAATACACTGGTGCCGACCATCAGTGTCCCAAAATAAAAAAAAGTGCA
*
4686089 TTGGGAGCCGAAAATTATACCTGGTGCCGGCCAT
64 TTGGAAGCCGAAAATTATACCTGGTGCCGGCCAT
4686123 CTACTGCCAA
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
106 7 0.08
107 8 0.09
108 30 0.34
109 7 0.08
110 35 0.40
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (108 bp):
CACCCAATTTTTTTTAAATACACTGGTGCCGACCATCAGTGTCCCAAAATAAAAAAAAGTGCATT
GGAAGCCGAAAATTATACCTGGTGCCGGCCATGTAATGGTCGC
Found at i:4686665 original size:14 final size:15
Alignment explanation
Indices: 4686646--4686675 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4686636 TTTTCATAAA
4686646 TTTTGT-AAATTTGT
1 TTTTGTCAAATTTGT
4686660 TTTTGTCAAATTTGT
1 TTTTGTCAAATTTGT
4686675 T
1 T
4686676 GGTGTAACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.20, C:0.03, G:0.13, T:0.63
Consensus pattern (15 bp):
TTTTGTCAAATTTGT
Found at i:4689052 original size:12 final size:14
Alignment explanation
Indices: 4689035--4689073 Score: 55
Period size: 12 Copynumber: 2.9 Consensus size: 14
4689025 TACTTTATGT
4689035 TTTTATTATTA-C-
1 TTTTATTATTATCA
4689047 TTTTATTATTATCA
1 TTTTATTATTATCA
4689061 TTTTATTTATTAT
1 TTTTA-TTATTAT
4689074 TTATTTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 11 0.46
13 1 0.04
14 5 0.21
15 7 0.29
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTATTATTATCA
Found at i:4689057 original size:15 final size:15
Alignment explanation
Indices: 4689036--4689098 Score: 56
Period size: 15 Copynumber: 3.9 Consensus size: 15
4689026 ACTTTATGTT
4689036 TTTATTATTACTTTTA
1 TTTATTATTA-TTTTA
*
4689052 -TTATTATCATTTTA
1 TTTATTATTATTTTA
4689066 TTTATTATTTATTTATA
1 TTTATTA-TTATTT-TA
*
4689083 TATTTTTATATATTTT
1 T-TTATTAT-TATTTT
4689099 CAAACTCTAG
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
14 5 0.13
15 14 0.36
16 5 0.13
17 5 0.13
18 10 0.26
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTATTATTATTTTA
Found at i:4689076 original size:11 final size:12
Alignment explanation
Indices: 4689062--4689097 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
4689052 TTATTATCAT
4689062 TTTATTTAT-TA
1 TTTATTTATATA
4689073 TTTATTTATATA
1 TTTATTTATATA
4689085 -TT-TTTATATA
1 TTTATTTATATA
4689095 TTT
1 TTT
4689098 TCAAACTCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 8 0.35
11 13 0.57
12 2 0.09
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTATTTATATA
Found at i:4692273 original size:25 final size:26
Alignment explanation
Indices: 4692245--4692297 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
4692235 CCCCGCCGAG
4692245 GGAGG-TTCGGAAAAAAATGGTAGAA
1 GGAGGATTCGGAAAAAAATGGTAGAA
4692270 GGAGGATTCGGAAAAAAATGGTAGAA
1 GGAGGATTCGGAAAAAAATGGTAGAA
4692296 GG
1 GG
4692298 GAGATTAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.19
26 22 0.81
ACGTcount: A:0.43, C:0.04, G:0.38, T:0.15
Consensus pattern (26 bp):
GGAGGATTCGGAAAAAAATGGTAGAA
Found at i:4692303 original size:26 final size:26
Alignment explanation
Indices: 4692243--4692303 Score: 97
Period size: 26 Copynumber: 2.3 Consensus size: 26
4692233 AACCCCGCCG
*
4692243 AGGGAGGTTCGGAAAAAAATGGTAGA
1 AGGGAGATTCGGAAAAAAATGGTAGA
4692269 A-GGAGGATTCGGAAAAAAATGGTAGA
1 AGGGA-GATTCGGAAAAAAATGGTAGA
4692295 AGGGAGATT
1 AGGGAGATT
4692304 AATCACACAG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 3 0.09
26 26 0.81
27 3 0.09
ACGTcount: A:0.43, C:0.03, G:0.38, T:0.16
Consensus pattern (26 bp):
AGGGAGATTCGGAAAAAAATGGTAGA
Found at i:4696308 original size:6 final size:6
Alignment explanation
Indices: 4696297--4696351 Score: 85
Period size: 6 Copynumber: 9.0 Consensus size: 6
4696287 TCACTTGAAA
4696297 AAAAAG AAAAAG AAAAAG AAAAAG AAAATAG AAAAA- AAAGAAG AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAA-AG AAAAAG AAA-AAG AAAAAG
4696346 AAAAAG
1 AAAAAG
4696352 GAGAGGCCAA
Statistics
Matches: 46, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
5 3 0.07
6 34 0.74
7 9 0.20
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:4696329 original size:25 final size:25
Alignment explanation
Indices: 4696296--4696350 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
4696286 TTCACTTGAA
4696296 AAAAAAGAAAAAGAAA-AAGAAAAAG
1 AAAAAAGAAAAA-AAAGAAGAAAAAG
*
4696321 AAAATAGAAAAAAAAGAAGAAAAAG
1 AAAAAAGAAAAAAAAGAAGAAAAAG
4696346 AAAAA
1 AAAAA
4696351 GGAGAGGCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 3 0.11
25 24 0.89
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.02
Consensus pattern (25 bp):
AAAAAAGAAAAAAAAGAAGAAAAAG
Found at i:4700013 original size:44 final size:44
Alignment explanation
Indices: 4699949--4700389 Score: 184
Period size: 44 Copynumber: 9.5 Consensus size: 44
4699939 TTATGGTGGA
*
4699949 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAG
* * * * * *
4699993 CCTTATCTCCCTGAAGTTGCAGCGGAGCAAACTGAAGACAGC-G
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAG
* * ** * * * *
4700036 TATCTTATTTCTCTGGCGTTGCAGTAGAACAGATTAAAGCTGCAAATTATGGCAG
1 --TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC--C-----A--CCAG
* * * *
4700091 ATCTTATCTTCCTGAAGTTGTAGTGGAGCATATTGAAGCGACCAG
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAG
* * * * * * *
4700136 CCCTATCTTCCTGAAGTTGCAGTGGAGCAGACTGAAGACAACGAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-CCACCAG
* * ** * ** * **
4700181 TCTTATTTCTCTGGCGTTGCAGTAGAATAGATTAAAGCTACAAATTATGGTGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC--C--ACCA-----G
* * **
4700234 ATATTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAATTCACCAG
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAG
* * * * * * *
4700279 CCTTATCTCCCTGAAGTTGCAGCGGAGTAGACTGAAGACAACGAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-CCACCAG
* * *
4700324 TCTTATTTCCCT-AGCGTTGCAGTGGAGCAGATTGAAGCCACTAG
1 TCTTATCTCCCTGA-AGTTGCAGTGGAGCAGATTGAAGCCACCAG
*
4700368 CCTTATCTCCCTGAAGTTGCAG
1 TCTTATCTCCCTGAAGTTGCAG
4700390 CAAAACAGAC
Statistics
Matches: 279, Mismatches: 92, Indels: 52
0.66 0.22 0.12
Matches are distributed among these distances:
43 1 0.00
44 120 0.43
45 92 0.33
47 2 0.01
48 2 0.01
50 2 0.01
52 2 0.01
54 57 0.20
55 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAG
Done.