Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62175169
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 981721 characters in sequence are not A, C, G, or T
File 146 of 202
Found at i:45458947 original size:11 final size:11
Alignment explanation
Indices: 45458931--45458959 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
45458921 ATCGTCGTCT
45458931 CTGTCGGTCGA
1 CTGTCGGTCGA
45458942 CTGTCGGTCGA
1 CTGTCGGTCGA
45458953 CTGTCGG
1 CTGTCGG
45458960 CCTTGCCTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.07, C:0.28, G:0.38, T:0.28
Consensus pattern (11 bp):
CTGTCGGTCGA
Found at i:45459147 original size:21 final size:23
Alignment explanation
Indices: 45459106--45459147 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
45459096 CTTTTCTCTC
*
45459106 TAATTTTTGTTTCATATAATACA
1 TAATTTTTGTTTCAAATAATACA
45459129 TAATTTTT-TTT-AAATAATA
1 TAATTTTTGTTTCAAATAATA
45459148 AAAAAGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 3 0.17
23 8 0.44
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (23 bp):
TAATTTTTGTTTCAAATAATACA
Found at i:45464066 original size:87 final size:87
Alignment explanation
Indices: 45463919--45464093 Score: 323
Period size: 87 Copynumber: 2.0 Consensus size: 87
45463909 TTTAGAGTGC
45463919 TAGAAGATCGATCCCTTCTTCATCGTTTGTCAAGGGCATTATTGCCAATGCAGGAGAACGTGAGT
1 TAGAAGATCGATCCCTTCTTCATCGTTTGTCAAGGGCATTATTGCCAATGCAGGAGAACGTGAGT
45463984 TTGAGTATGCTGAAGCACATTA
66 TTGAGTATGCTGAAGCACATTA
* *
45464006 TAGAAGATCGATCCCTTCTTCATCGTTTGTCAATGGCATTATTGCCAATGCAGGATAACGTGAGT
1 TAGAAGATCGATCCCTTCTTCATCGTTTGTCAAGGGCATTATTGCCAATGCAGGAGAACGTGAGT
*
45464071 TTGAGTATGCTGAAGCATATTA
66 TTGAGTATGCTGAAGCACATTA
45464093 T
1 T
45464094 CCTCCTATTT
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
87 85 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (87 bp):
TAGAAGATCGATCCCTTCTTCATCGTTTGTCAAGGGCATTATTGCCAATGCAGGAGAACGTGAGT
TTGAGTATGCTGAAGCACATTA
Found at i:45467419 original size:10 final size:10
Alignment explanation
Indices: 45467389--45467445 Score: 52
Period size: 10 Copynumber: 6.1 Consensus size: 10
45467379 TAAAAAAATT
45467389 ATAA-TTTTA
1 ATAATTTTTA
*
45467398 A-AATATTT-
1 ATAATTTTTA
45467406 ATAATTTTTA
1 ATAATTTTTA
45467416 ATAA-TTTT-
1 ATAATTTTTA
*
45467424 ATGATTTTTTA
1 AT-AATTTTTA
45467435 ATAATTTTTA
1 ATAATTTTTA
45467445 A
1 A
45467446 ATTTTAAAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
8 5 0.13
9 15 0.39
10 16 0.42
11 2 0.05
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (10 bp):
ATAATTTTTA
Found at i:45467419 original size:27 final size:27
Alignment explanation
Indices: 45467387--45467454 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 27
45467377 AATAAAAAAA
45467387 TTATAATTTTAAAATATTT-ATAATTT
1 TTATAATTTTAAAATATTTAATAATTT
* * *
45467413 TTAATAATTTTATGATTTTTTAATAATTT
1 TT-ATAATTTTA-AAATATTTAATAATTT
45467442 TTA-AATTTTAAAA
1 TTATAATTTTAAAA
45467455 GGGCTTAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
26 3 0.09
27 16 0.47
28 6 0.18
29 9 0.26
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.57
Consensus pattern (27 bp):
TTATAATTTTAAAATATTTAATAATTT
Found at i:45467434 original size:19 final size:18
Alignment explanation
Indices: 45467387--45467452 Score: 75
Period size: 19 Copynumber: 3.7 Consensus size: 18
45467377 AATAAAAAAA
45467387 TTATAA-TTTTAA-AATAT
1 TTATAATTTTTAATAAT-T
45467404 TTATAATTTTTAATAATT
1 TTATAATTTTTAATAATT
*
45467422 TTATGATTTTTTAATAATT
1 TTAT-AATTTTTAATAATT
*
45467441 TT-TAAATTTTAA
1 TTATAATTTTTAA
45467453 AAGGGCTTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
17 13 0.30
18 12 0.28
19 18 0.42
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (18 bp):
TTATAATTTTTAATAATT
Found at i:45470592 original size:14 final size:14
Alignment explanation
Indices: 45470572--45470603 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
45470562 TTATGAGTTA
45470572 AAAAAAAAGATAAAG
1 AAAAAAAAGA-AAAG
45470587 AAAAAAAAGAAAAG
1 AAAAAAAAGAAAAG
45470601 AAA
1 AAA
45470604 GTGAGCCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.03
Consensus pattern (14 bp):
AAAAAAAAGAAAAG
Found at i:45471942 original size:13 final size:13
Alignment explanation
Indices: 45471924--45471948 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45471914 TGTATTTTGA
45471924 ACAAAATATTTAC
1 ACAAAATATTTAC
45471937 ACAAAATATTTA
1 ACAAAATATTTA
45471949 AATTTAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (13 bp):
ACAAAATATTTAC
Found at i:45474844 original size:14 final size:14
Alignment explanation
Indices: 45474825--45474901 Score: 90
Period size: 14 Copynumber: 5.8 Consensus size: 14
45474815 TCTTCGTTGC
*
45474825 TTTTGAAAAGTACT
1 TTTTGAAAAGTGCT
45474839 TTTTGAAAAGTGCT
1 TTTTGAAAAGTGCT
45474853 TTTTGAAAAGTGC-
1 TTTTGAAAAGTGCT
* *
45474866 TGTGGAAAAGTGC-
1 TTTTGAAAAGTGCT
*
45474879 TTTTGAGAAGT--T
1 TTTTGAAAAGTGCT
45474891 TTTTGAAAAGT
1 TTTTGAAAAGT
45474902 TTGGTTTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
12 10 0.18
13 19 0.35
14 26 0.47
ACGTcount: A:0.31, C:0.05, G:0.23, T:0.40
Consensus pattern (14 bp):
TTTTGAAAAGTGCT
Found at i:45474873 original size:27 final size:28
Alignment explanation
Indices: 45474825--45474882 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 28
45474815 TCTTCGTTGC
* *
45474825 TTTTGAAAAGTACTTTTTGAAAAGTGCT
1 TTTTGAAAAGTACTTGTGGAAAAGTGCT
*
45474853 TTTTGAAAAGTGC-TGTGGAAAAGTGCT
1 TTTTGAAAAGTACTTGTGGAAAAGTGCT
45474880 TTT
1 TTT
45474883 GAGAAGTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 15 0.56
28 12 0.44
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.41
Consensus pattern (28 bp):
TTTTGAAAAGTACTTGTGGAAAAGTGCT
Found at i:45475213 original size:21 final size:21
Alignment explanation
Indices: 45475169--45475215 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
45475159 AAACTATATT
*
45475169 TTAAATATTTAAATATAACCA
1 TTAAATATTTAAATATAACAA
*
45475190 TTAAATATTTATAAT-TAATAA
1 TTAAATATTTA-AATATAACAA
45475211 TTAAA
1 TTAAA
45475216 AAAAATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 20 0.87
22 3 0.13
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (21 bp):
TTAAATATTTAAATATAACAA
Found at i:45476094 original size:11 final size:11
Alignment explanation
Indices: 45476078--45476102 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
45476068 ACGCATATCT
45476078 GAAAATTAAAA
1 GAAAATTAAAA
45476089 GAAAATTAAAA
1 GAAAATTAAAA
45476100 GAA
1 GAA
45476103 CAAAATCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (11 bp):
GAAAATTAAAA
Found at i:45476124 original size:18 final size:18
Alignment explanation
Indices: 45476103--45476137 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
45476093 ATTAAAAGAA
45476103 CAAAATCAAATAAAAACC
1 CAAAATCAAATAAAAACC
45476121 CAAAATCAAATAAAAAC
1 CAAAATCAAATAAAAAC
45476138 AAATAAATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.69, C:0.20, G:0.00, T:0.11
Consensus pattern (18 bp):
CAAAATCAAATAAAAACC
Found at i:45502969 original size:21 final size:21
Alignment explanation
Indices: 45502945--45502984 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
45502935 AGGATTCAAG
**
45502945 AGTAAGGATGTGAGACATCTA
1 AGTAAGGAAATGAGACATCTA
45502966 AGTAAGGAAATGAGACATC
1 AGTAAGGAAATGAGACATC
45502985 ATGAAGAGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.10, G:0.28, T:0.20
Consensus pattern (21 bp):
AGTAAGGAAATGAGACATCTA
Found at i:45505418 original size:84 final size:84
Alignment explanation
Indices: 45505277--45505450 Score: 348
Period size: 84 Copynumber: 2.1 Consensus size: 84
45505267 CTTCACCGAA
45505277 TTTTCTTGTACCTATCTTGGATTTGGTAGGAAAATCAGGGGGACCGAAAGTATATTTATGGGAAG
1 TTTTCTTGTACCTATCTTGGATTTGGTAGGAAAATCAGGGGGACCGAAAGTATATTTATGGGAAG
45505342 GGGACATTTTAGATGGTTT
66 GGGACATTTTAGATGGTTT
45505361 TTTTCTTGTACCTATCTTGGATTTGGTAGGAAAATCAGGGGGACCGAAAGTATATTTATGGGAAG
1 TTTTCTTGTACCTATCTTGGATTTGGTAGGAAAATCAGGGGGACCGAAAGTATATTTATGGGAAG
45505426 GGGACATTTTAGATGGTTT
66 GGGACATTTTAGATGGTTT
45505445 TTTTCT
1 TTTTCT
45505451 ATCTGTTTAA
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 90 1.00
ACGTcount: A:0.25, C:0.10, G:0.28, T:0.37
Consensus pattern (84 bp):
TTTTCTTGTACCTATCTTGGATTTGGTAGGAAAATCAGGGGGACCGAAAGTATATTTATGGGAAG
GGGACATTTTAGATGGTTT
Found at i:45506312 original size:25 final size:25
Alignment explanation
Indices: 45506279--45506432 Score: 132
Period size: 25 Copynumber: 6.2 Consensus size: 25
45506269 GTTTACCTGA
* *
45506279 AAAGTCTTTGTGGCATATTATTTGG
1 AAAGCCTTTGTGGCGTATTATTTGG
* *
45506304 AAAGCCTTTGTGGCGTATTATCTAG
1 AAAGCCTTTGTGGCGTATTATTTGG
* * * * *
45506329 AAGGCCTTTGTGTC-TAATCTTATGA
1 AAAGCCTTTGTGGCGTATTATT-TGG
*
45506354 AAAGCCTTTGAGGCGTATTATTTGG
1 AAAGCCTTTGTGGCGTATTATTTGG
* * * *
45506379 AACGCCTTTGTGGC-TAGTCTTATGA
1 AAAGCCTTTGTGGCGTATTATT-TGG
* *
45506404 AAAGCCTTTGTGGCGTATTGTATGG
1 AAAGCCTTTGTGGCGTATTATTTGG
45506429 AAAG
1 AAAG
45506433 ACTATTTGAC
Statistics
Matches: 98, Mismatches: 27, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
24 9 0.09
25 80 0.82
26 9 0.09
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.37
Consensus pattern (25 bp):
AAAGCCTTTGTGGCGTATTATTTGG
Found at i:45506361 original size:50 final size:50
Alignment explanation
Indices: 45506304--45506422 Score: 184
Period size: 50 Copynumber: 2.4 Consensus size: 50
45506294 TATTATTTGG
* *
45506304 AAAGCCTTTGTGGCGTATTATCTAGAAGGCCTTTGTGTCTAATCTTATGA
1 AAAGCCTTTGTGGCGTATTATCTAGAACGCCTTTGTGGCTAATCTTATGA
* * * *
45506354 AAAGCCTTTGAGGCGTATTATTTGGAACGCCTTTGTGGCTAGTCTTATGA
1 AAAGCCTTTGTGGCGTATTATCTAGAACGCCTTTGTGGCTAATCTTATGA
45506404 AAAGCCTTTGTGGCGTATT
1 AAAGCCTTTGTGGCGTATT
45506423 GTATGGAAAG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 62 1.00
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.37
Consensus pattern (50 bp):
AAAGCCTTTGTGGCGTATTATCTAGAACGCCTTTGTGGCTAATCTTATGA
Found at i:45506411 original size:75 final size:75
Alignment explanation
Indices: 45506276--45506415 Score: 185
Period size: 75 Copynumber: 1.9 Consensus size: 75
45506266 ACGGTTTACC
* * * *
45506276 TGAAAAGTCTTTGTGGCATATTATTTGGAAAGCCTTTGTGGCGTATTATCTAGAAGGCCTTTGTG
1 TGAAAAGCCTTTGAGGCATATTATTTGGAAAGCCTTTGTGGCGTATTATCGAGAAAGCCTTTGTG
45506341 TCTAATCTTA
66 TCTAATCTTA
* * *
45506351 TGAAAAGCCTTTGAGGCGTATTATTTGGAACGCCTTTGTGGCTAGTCTTAT-GA-AAAGCCTTTG
1 TGAAAAGCCTTTGAGGCATATTATTTGGAAAGCCTTTGTGGC--GTATTATCGAGAAAGCCTTTG
45506414 TG
64 TG
45506416 GCGTATTGTA
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
75 49 0.88
76 1 0.02
77 6 0.11
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (75 bp):
TGAAAAGCCTTTGAGGCATATTATTTGGAAAGCCTTTGTGGCGTATTATCGAGAAAGCCTTTGTG
TCTAATCTTA
Found at i:45511193 original size:26 final size:26
Alignment explanation
Indices: 45511164--45511216 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
45511154 TAGTTCTTTG
*
45511164 AAAATCCTTT-AAACTTCTAAAACTCT
1 AAAAT-CTTTAAAACCTCTAAAACTCT
* *
45511190 AAAATTTTTAAAACCTCTAAAATTCT
1 AAAATCTTTAAAACCTCTAAAACTCT
45511216 A
1 A
45511217 GACTCACTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.45, C:0.19, G:0.00, T:0.36
Consensus pattern (26 bp):
AAAATCTTTAAAACCTCTAAAACTCT
Found at i:45513732 original size:19 final size:19
Alignment explanation
Indices: 45513679--45513736 Score: 98
Period size: 19 Copynumber: 3.1 Consensus size: 19
45513669 AATAATGCAA
*
45513679 TGTTAGATATTTTACCGTT
1 TGTTAGATATTTTACTGTT
45513698 TGTTAGATATTTTACTGTT
1 TGTTAGATATTTTACTGTT
*
45513717 TGTTAGATATTGTACTGTT
1 TGTTAGATATTTTACTGTT
45513736 T
1 T
45513737 ATTTAAACTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 37 1.00
ACGTcount: A:0.21, C:0.07, G:0.17, T:0.55
Consensus pattern (19 bp):
TGTTAGATATTTTACTGTT
Found at i:45520569 original size:22 final size:22
Alignment explanation
Indices: 45520537--45520588 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
45520527 GGGTAGGAAA
* * *
45520537 CTGCATTTGTATTTGATTTGTT
1 CTGCATCTGTATCTGATATGTT
*
45520559 TTGCATCTGTATCTGATATGTT
1 CTGCATCTGTATCTGATATGTT
45520581 CTGCATCT
1 CTGCATCT
45520589 TATATGAACT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.15, C:0.15, G:0.17, T:0.52
Consensus pattern (22 bp):
CTGCATCTGTATCTGATATGTT
Found at i:45522618 original size:98 final size:98
Alignment explanation
Indices: 45522497--45522686 Score: 317
Period size: 98 Copynumber: 1.9 Consensus size: 98
45522487 ATATAAAAAT
* *
45522497 TTTAAAAGAGCATCCACTCATCCAAGATTTAAGAAACCACACCCAATACGTTAGAGCACGATCCC
1 TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAACCACACCCAATACGTTAGAGCACAATCCC
45522562 TTTAGAATCCCAAACTCGGAATATTTCATTTAA
66 TTTAGAATCCCAAACTCGGAATATTTCATTTAA
* * * *
45522595 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAACCACACCCAATACGTTAGAGCACAATCCC
*
45522660 TTTAGAATCTCAAACTCGGAATATTTC
66 TTTAGAATCCCAAACTCGGAATATTTC
45522687 CTTCATGATT
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 85 1.00
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.27
Consensus pattern (98 bp):
TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAACCACACCCAATACGTTAGAGCACAATCCC
TTTAGAATCCCAAACTCGGAATATTTCATTTAA
Found at i:45524303 original size:17 final size:19
Alignment explanation
Indices: 45524280--45524324 Score: 67
Period size: 17 Copynumber: 2.4 Consensus size: 19
45524270 CCTGGATCAA
45524280 TTTTGGGCCACT-ATTTGG
1 TTTTGGGCCACTAATTTGG
45524298 -TTTGGGCCACTGAATTTGG
1 TTTTGGGCCACT-AATTTGG
45524317 TTTTGGGC
1 TTTTGGGC
45524325 TTTGTGGCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 11 0.46
19 6 0.25
20 7 0.29
ACGTcount: A:0.11, C:0.16, G:0.31, T:0.42
Consensus pattern (19 bp):
TTTTGGGCCACTAATTTGG
Found at i:45524811 original size:25 final size:24
Alignment explanation
Indices: 45524768--45524819 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
45524758 ATGTTCAAGT
45524768 GAGCCATATCAGGAAGCTCATAAA
1 GAGCCATATCAGGAAGCTCATAAA
* *
45524792 GAGCCTATATCGGGATGCTCATAAA
1 GAGCC-ATATCAGGAAGCTCATAAA
45524817 GAG
1 GAG
45524820 TTGCGGTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (24 bp):
GAGCCATATCAGGAAGCTCATAAA
Found at i:45528314 original size:3 final size:3
Alignment explanation
Indices: 45528306--45528336 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
45528296 TTGTTATTTA
45528306 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
45528337 CTTGATCATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:45529512 original size:18 final size:18
Alignment explanation
Indices: 45529489--45529523 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
45529479 TTATATTTTT
45529489 TTAATATTTTGATAATTA
1 TTAATATTTTGATAATTA
45529507 TTAATATTTTGATAATT
1 TTAATATTTTGATAATT
45529524 TATAAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (18 bp):
TTAATATTTTGATAATTA
Found at i:45529535 original size:19 final size:18
Alignment explanation
Indices: 45529491--45529534 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
45529481 ATATTTTTTT
*
45529491 AATATTTTGATAATTATT
1 AATATTTTGATAATTATA
45529509 AATATTTTGATAATTTATA
1 AATATTTTGATAA-TTATA
45529528 AAT-TTTT
1 AATATTTT
45529535 TTATACTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 17 0.71
19 7 0.29
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (18 bp):
AATATTTTGATAATTATA
Found at i:45529695 original size:15 final size:17
Alignment explanation
Indices: 45529668--45529702 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
45529658 TAATATTTTG
45529668 TTTGAATTTTTTTA-TA
1 TTTGAATTTTTTTATTA
45529684 TTTGAA-TTTTTTATTA
1 TTTGAATTTTTTTATTA
45529700 TTT
1 TTT
45529703 TTAAAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (17 bp):
TTTGAATTTTTTTATTA
Found at i:45532137 original size:25 final size:25
Alignment explanation
Indices: 45532109--45532161 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
45532099 TTTGTTATGT
* * *
45532109 TATGCCATGATCTGATTTGATATTA
1 TATGCCATGATCTAATCTGATATAA
* *
45532134 TATGCTATGGTCTAATCTGATATAA
1 TATGCCATGATCTAATCTGATATAA
45532159 TAT
1 TAT
45532162 ACTACGATTC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.43
Consensus pattern (25 bp):
TATGCCATGATCTAATCTGATATAA
Found at i:45539237 original size:29 final size:31
Alignment explanation
Indices: 45539177--45539246 Score: 83
Period size: 33 Copynumber: 2.3 Consensus size: 31
45539167 TGTTATGATT
*
45539177 TGTATGAAAATATGTAAGTATGCATGCCATATGA
1 TGTATG-ATATATGTAAGTATGCA--CCATATGA
45539211 TGTATGATATATGTAAGTATG-A-CATATGA
1 TGTATGATATATGTAAGTATGCACCATATGA
45539240 T-TATGAT
1 TGTATGAT
45539247 TTGTTTGTGT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
28 6 0.17
29 8 0.23
32 1 0.03
33 14 0.40
34 6 0.17
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (31 bp):
TGTATGATATATGTAAGTATGCACCATATGA
Found at i:45539503 original size:5 final size:5
Alignment explanation
Indices: 45539494--45539588 Score: 52
Period size: 5 Copynumber: 19.0 Consensus size: 5
45539484 ATGTTATGCC
* * * * *
45539494 ATGAT TTGAT TTGAT ATGAT ATGAT ATGGT CTGAT CTGAT ATGAT AT-ACT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGA-T
* * * * *
45539544 ATGAT -TCGAC ATAAC ATGAG AT-ATT ATGAT ATGAT AAGAT ATGAT
1 ATGAT AT-GAT ATGAT ATGAT ATGA-T ATGAT ATGAT ATGAT ATGAT
45539589 CCGTATAAAT
Statistics
Matches: 71, Mismatches: 13, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
4 3 0.04
5 65 0.92
6 3 0.04
ACGTcount: A:0.36, C:0.06, G:0.19, T:0.39
Consensus pattern (5 bp):
ATGAT
Found at i:45542524 original size:20 final size:20
Alignment explanation
Indices: 45542499--45542537 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
45542489 TCAGAAATAG
*
45542499 TGGTTTTAGGACCACAATTT
1 TGGTTTCAGGACCACAATTT
*
45542519 TGGTTTCAGGACTACAATT
1 TGGTTTCAGGACCACAATT
45542538 CTGATGAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (20 bp):
TGGTTTCAGGACCACAATTT
Found at i:45547002 original size:19 final size:20
Alignment explanation
Indices: 45546978--45547019 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
45546968 ATATAAGTTT
45546978 AAAAACTAAAAA-AACACTA
1 AAAAACTAAAAAGAACACTA
*
45546997 AAAAACTAAAAAGAAGACTA
1 AAAAACTAAAAAGAACACTA
45547017 AAA
1 AAA
45547020 TGATATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.74, C:0.12, G:0.05, T:0.10
Consensus pattern (20 bp):
AAAAACTAAAAAGAACACTA
Found at i:45550316 original size:16 final size:16
Alignment explanation
Indices: 45550295--45550328 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
45550285 GCAAAGTTGA
45550295 AGAGACAGGCCAACAC
1 AGAGACAGGCCAACAC
45550311 AGAGACAGGCCAACAC
1 AGAGACAGGCCAACAC
45550327 AG
1 AG
45550329 TGAAGTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.29, G:0.26, T:0.00
Consensus pattern (16 bp):
AGAGACAGGCCAACAC
Found at i:45555524 original size:18 final size:18
Alignment explanation
Indices: 45555501--45555538 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
45555491 GTTATTCTAA
45555501 AGAAGAAGAAGATAAGAG
1 AGAAGAAGAAGATAAGAG
45555519 AGAAGAAGAAGATAAGAG
1 AGAAGAAGAAGATAAGAG
45555537 AG
1 AG
45555539 CTCTACATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.34, T:0.05
Consensus pattern (18 bp):
AGAAGAAGAAGATAAGAG
Found at i:45556076 original size:12 final size:12
Alignment explanation
Indices: 45556059--45556085 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
45556049 ACGGTGTAAT
45556059 TGACGTGTTAGA
1 TGACGTGTTAGA
45556071 TGACGTGTTAGA
1 TGACGTGTTAGA
45556083 TGA
1 TGA
45556086 TGTGGAGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.07, G:0.33, T:0.33
Consensus pattern (12 bp):
TGACGTGTTAGA
Found at i:45562703 original size:21 final size:20
Alignment explanation
Indices: 45562679--45562737 Score: 52
Period size: 19 Copynumber: 3.0 Consensus size: 20
45562669 TATAGTGTGA
45562679 GTTACATAAATTATTCAATTT
1 GTTACATAAATTATT-AATTT
*
45562700 GTTACA-ATATTA-TAATATT
1 GTTACATAAATTATTAAT-TT
*
45562719 TTTA-ATAAATTATTGAATT
1 GTTACATAAATTATT-AATT
45562738 CCTTAGCACA
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
18 4 0.13
19 11 0.35
20 7 0.23
21 9 0.29
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (20 bp):
GTTACATAAATTATTAATTT
Found at i:45562774 original size:20 final size:21
Alignment explanation
Indices: 45562744--45562784 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
45562734 AATTCCTTAG
45562744 CACATAAATTACTAAAATTCT
1 CACATAAATTACTAAAATTCT
*
45562765 CACA-AAATTACTCAAATTCT
1 CACATAAATTACTAAAATTCT
45562785 TTGTAATGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (21 bp):
CACATAAATTACTAAAATTCT
Found at i:45568700 original size:27 final size:27
Alignment explanation
Indices: 45568663--45568723 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
45568653 AGAGGTCAAT
45568663 AAATGACCGAAATACCCCCATA-GAGTA
1 AAATGACCGAAATACCCCCATAGGA-TA
*
45568690 AAATGATCGAAATACCCCCATAGGATA
1 AAATGACCGAAATACCCCCATAGGATA
45568717 AAATGAC
1 AAATGAC
45568724 TGTTATACCC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 29 0.94
28 2 0.06
ACGTcount: A:0.46, C:0.23, G:0.15, T:0.16
Consensus pattern (27 bp):
AAATGACCGAAATACCCCCATAGGATA
Found at i:45569042 original size:28 final size:27
Alignment explanation
Indices: 45569010--45569067 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 27
45569000 ATACTGATAT
*
45569010 TGTATTAGGCTAAGGCCCACACTGTTAC
1 TGTATCAGGCTAAGGCCCACACTG-TAC
*
45569038 TGTATCGGGCTAAGGCCCACACTGTAC
1 TGTATCAGGCTAAGGCCCACACTGTAC
45569065 TGT
1 TGT
45569068 TACTGAATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
27 6 0.21
28 22 0.79
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (27 bp):
TGTATCAGGCTAAGGCCCACACTGTAC
Found at i:45569067 original size:33 final size:34
Alignment explanation
Indices: 45569030--45569100 Score: 99
Period size: 33 Copynumber: 2.1 Consensus size: 34
45569020 TAAGGCCCAC
* *
45569030 ACTGTTACTGTATCGGGCTAAGGCCCACACTG-T
1 ACTGTTACTGAATAGGGCTAAGGCCCACACTGTT
* *
45569063 ACTGTTACTGAATAGGGCTTAGGCCCAGACTGTT
1 ACTGTTACTGAATAGGGCTAAGGCCCACACTGTT
45569097 ACTG
1 ACTG
45569101 CATGTTGTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
33 28 0.85
34 5 0.15
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (34 bp):
ACTGTTACTGAATAGGGCTAAGGCCCACACTGTT
Found at i:45571913 original size:15 final size:15
Alignment explanation
Indices: 45571869--45571914 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
45571859 AGGAATTTTG
45571869 AAAAAATTAAGAAAA
1 AAAAAATTAAGAAAA
*
45571884 AATAAAA-TAATAAAA
1 AA-AAAATTAAGAAAA
45571899 ATAAAAATTAA-AAAA
1 A-AAAAATTAAGAAAA
45571914 A
1 A
45571915 CCAAACTCCC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 19 0.70
16 8 0.30
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.17
Consensus pattern (15 bp):
AAAAAATTAAGAAAA
Found at i:45576893 original size:3 final size:3
Alignment explanation
Indices: 45576879--45576915 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
45576869 ATTAAGAAAT
*
45576879 TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
45576916 CAGTATTATC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:45577338 original size:29 final size:28
Alignment explanation
Indices: 45577306--45577369 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 28
45577296 TAACATCTTC
*
45577306 AATTTATTTCAACTTATTTCAA-TATTGTT
1 AATTTATTCCAACTTATTTCAACT-TT-TT
* *
45577335 AATTTATTCCAATTTATTTTAACTTTTT
1 AATTTATTCCAACTTATTTCAACTTTTT
45577363 AATTTAT
1 AATTTAT
45577370 AGATATCATA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 9 0.29
29 21 0.68
30 1 0.03
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.58
Consensus pattern (28 bp):
AATTTATTCCAACTTATTTCAACTTTTT
Found at i:45577350 original size:10 final size:10
Alignment explanation
Indices: 45577303--45577353 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
45577293 TTTTAACATC
45577303 TTCAATTTAT
1 TTCAATTTAT
*
45577313 TTCAACTTAT
1 TTCAATTTAT
45577323 TTCAA--TAT
1 TTCAATTTAT
*
45577331 TGTTAATTTAT
1 T-TCAATTTAT
*
45577342 TCCAATTTAT
1 TTCAATTTAT
45577352 TT
1 TT
45577354 TAACTTTTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
8 4 0.12
9 3 0.09
10 22 0.67
11 4 0.12
ACGTcount: A:0.29, C:0.12, G:0.02, T:0.57
Consensus pattern (10 bp):
TTCAATTTAT
Found at i:45580114 original size:25 final size:24
Alignment explanation
Indices: 45580069--45580115 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
45580059 CATCGCAGGG
* *
45580069 CAAAAATCAAAACACATCCAAACC
1 CAAAAATCAAAACAAAACCAAACC
45580093 CAAAAATCAACAACAAAACCAAA
1 CAAAAATCAA-AACAAAACCAAA
45580116 AGAAAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.64, C:0.30, G:0.00, T:0.06
Consensus pattern (24 bp):
CAAAAATCAAAACAAAACCAAACC
Found at i:45580946 original size:32 final size:32
Alignment explanation
Indices: 45580910--45580976 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
45580900 GCCTACACGC
* * * **
45580910 CCAAATTGGCCTTGTCCATGTGGCCCACACAG
1 CCAAATCGGCCTAGGCCATGTAACCCACACAG
*
45580942 CCAAATCGGCCTAGGCCATGTAACCCACACGG
1 CCAAATCGGCCTAGGCCATGTAACCCACACAG
45580974 CCA
1 CCA
45580977 CACACACCCG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.25, C:0.37, G:0.21, T:0.16
Consensus pattern (32 bp):
CCAAATCGGCCTAGGCCATGTAACCCACACAG
Found at i:45585901 original size:13 final size:13
Alignment explanation
Indices: 45585883--45585907 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45585873 TTCTGATTTA
45585883 CTGTATCTGCATT
1 CTGTATCTGCATT
45585896 CTGTATCTGCAT
1 CTGTATCTGCAT
45585908 CCTAATGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.16, T:0.44
Consensus pattern (13 bp):
CTGTATCTGCATT
Found at i:45589042 original size:20 final size:20
Alignment explanation
Indices: 45589005--45589042 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
45588995 AAAGTTTCTC
*
45589005 AAAATTACTACATCTCTTGT
1 AAAATTACTAAATCTCTTGT
*
45589025 AAAATTACTAAATTTCTT
1 AAAATTACTAAATCTCTT
45589043 ACAACCATGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.16, G:0.03, T:0.42
Consensus pattern (20 bp):
AAAATTACTAAATCTCTTGT
Found at i:45589127 original size:20 final size:19
Alignment explanation
Indices: 45589084--45589160 Score: 82
Period size: 20 Copynumber: 3.9 Consensus size: 19
45589074 AAAATTTTAA
*
45589084 ATTACTAAATATCTTATTG
1 ATTACTAAATTTCTTATTG
45589103 AATTACTAAATTTCTTATTAG
1 -ATTACTAAATTTCTTATT-G
* * **
45589124 ATTATTATATTTCTTACGG
1 ATTACTAAATTTCTTATTG
45589143 ATTTACTAAATTTCTTAT
1 A-TTACTAAATTTCTTAT
45589161 GTTGAAGAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
19 2 0.04
20 44 0.94
21 1 0.02
ACGTcount: A:0.34, C:0.10, G:0.05, T:0.51
Consensus pattern (19 bp):
ATTACTAAATTTCTTATTG
Found at i:45595956 original size:20 final size:20
Alignment explanation
Indices: 45595922--45595963 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
45595912 GATTATTTAA
** *
45595922 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
45595942 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
45595962 AT
1 AT
45595964 TTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:45599871 original size:21 final size:21
Alignment explanation
Indices: 45599845--45599897 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
45599835 CATCTTCAGC
*
45599845 AACTTCTTCTTCT-TCAGCAAA
1 AACTTCTTCTTCTAT-AACAAA
*
45599866 AACTTCCTCTTCTATAACAAA
1 AACTTCTTCTTCTATAACAAA
45599887 AACTTCCTTCT
1 AACTT-CTTCT
45599898 GAACAACAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 22 0.81
22 5 0.19
ACGTcount: A:0.30, C:0.30, G:0.02, T:0.38
Consensus pattern (21 bp):
AACTTCTTCTTCTATAACAAA
Found at i:45616974 original size:51 final size:50
Alignment explanation
Indices: 45616842--45617036 Score: 203
Period size: 51 Copynumber: 3.9 Consensus size: 50
45616832 GAAGTTGCTA
* * *
45616842 GATCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCGGA-ATGATA
1 GATCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA-GATT
* * * * *
45616892 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTT
1 GATCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-ATT
* * * * * *
45616943 GATCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCAGATGAAAAT
1 GATCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT-AGATT
* * *
45616994 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGAACCGG
1 GATCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
45617037 GTATCATTTA
Statistics
Matches: 116, Mismatches: 26, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
50 39 0.34
51 76 0.66
52 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (50 bp):
GATCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGATT
Found at i:45617036 original size:102 final size:101
Alignment explanation
Indices: 45616842--45617036 Score: 293
Period size: 101 Copynumber: 1.9 Consensus size: 101
45616832 GAAGTTGCTA
* * *
45616842 GATCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCGGAATGATAGGTCGCATGTGTAGT
1 GATCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCAGAATGAAAGGTCACATGTGTAGT
*
45616907 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTT
66 ACTATGTGCAGGCTACTATGCGAACCGGATAGCTTT
* * *
45616943 GATCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCAG-ATGAAAATGGTCACATGTGTA
1 GATCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCAGAATG-AAA-GGTCACATGTGTA
*
45617007 GTACTATGTGCAGGCTACTATGTGAACCGG
64 GTACTATGTGCAGGCTACTATGCGAACCGG
45617037 GTATCATTTA
Statistics
Matches: 84, Mismatches: 8, Indels: 3
0.88 0.08 0.03
Matches are distributed among these distances:
100 3 0.04
101 41 0.49
102 40 0.48
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (101 bp):
GATCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCAGAATGAAAGGTCACATGTGTAGT
ACTATGTGCAGGCTACTATGCGAACCGGATAGCTTT
Found at i:45617065 original size:102 final size:100
Alignment explanation
Indices: 45616846--45617036 Score: 258
Period size: 102 Copynumber: 1.9 Consensus size: 100
45616836 TTGCTAGATC
* * * *
45616846 ACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCGGAATGATAGGTCGCATGTGTAGTACTA
1 ACGTGTGTA-TACTATGTGTAGGCTACTACATGTACCAGAATGAAAGGTCACATGTGTAGTACTA
* *
45616911 TGTGCAGGCTACTATGCGTACCGGATAGCTTTGATC
65 TGTGCAGGCTACTATGCGAACCGGATAGCTTTGATA
* *
45616947 ACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCAG-ATGAAAATGGTCACATGTGTAGTAC
1 ACGTGTGTA-TACTATGTGTAGGCTACTACATGTACCAGAATG-AAA-GGTCACATGTGTAGTAC
*
45617011 TATGTGCAGGCTACTATGTGAACCGG
63 TATGTGCAGGCTACTATGCGAACCGG
45617037 GTATCATTTA
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
100 3 0.04
101 37 0.46
102 40 0.50
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (100 bp):
ACGTGTGTATACTATGTGTAGGCTACTACATGTACCAGAATGAAAGGTCACATGTGTAGTACTAT
GTGCAGGCTACTATGCGAACCGGATAGCTTTGATA
Found at i:45621191 original size:49 final size:49
Alignment explanation
Indices: 45621137--45621234 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
45621127 ATTATGAGAA
*
45621137 CACTCTTGATGGGATCTACCTATGTGAGTGAAAGTGTGGCCACTTCTAG
1 CACTCTTGATGGAATCTACCTATGTGAGTGAAAGTGTGGCCACTTCTAG
45621186 CACTCTTGATGGAATCTACCTATGTGAGTGAAAGTGTGGCCACTTCTAG
1 CACTCTTGATGGAATCTACCTATGTGAGTGAAAGTGTGGCCACTTCTAG
45621235 GAGTTCAAAG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (49 bp):
CACTCTTGATGGAATCTACCTATGTGAGTGAAAGTGTGGCCACTTCTAG
Found at i:45622732 original size:21 final size:22
Alignment explanation
Indices: 45622693--45622735 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
45622683 TAGAAAAGCT
*
45622693 AAAACAAAAATCAAGATTAAAA
1 AAAACAAAAATCAACATTAAAA
*
45622715 AAAACTAAAA-CAACATTAAAA
1 AAAACAAAAATCAACATTAAAA
45622736 TCCTAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.72, C:0.12, G:0.02, T:0.14
Consensus pattern (22 bp):
AAAACAAAAATCAACATTAAAA
Found at i:45630350 original size:18 final size:18
Alignment explanation
Indices: 45630316--45630364 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
45630306 CCAAAAAATA
*
45630316 TTGAAAATT-ATTTTACT
1 TTGAAAATTAAATTTACT
45630333 TTGAAAATTAAATTTACT
1 TTGAAAATTAAATTTACT
* *
45630351 TAGAAAATAAAATT
1 TTGAAAATTAAATT
45630365 GTTATATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 9 0.32
18 19 0.68
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (18 bp):
TTGAAAATTAAATTTACT
Found at i:45637765 original size:21 final size:21
Alignment explanation
Indices: 45637741--45637780 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
45637731 CTTGAACTTA
*
45637741 AAACCTCGAACCTTGAACCAT
1 AAACCTCGAACCCTGAACCAT
* *
45637762 AAACTTTGAACCCTGAACC
1 AAACCTCGAACCCTGAACC
45637781 CTGAGGTTCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.33, G:0.10, T:0.20
Consensus pattern (21 bp):
AAACCTCGAACCCTGAACCAT
Found at i:45637820 original size:21 final size:20
Alignment explanation
Indices: 45637790--45637854 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 20
45637780 CCTGAGGTTC
45637790 AAGGTTTGGGTTTAGAATTT
1 AAGGTTTGGGTTTAGAATTT
* *
45637810 AAGGTTTTGGG-TTCGAGGTTT
1 AAGG-TTTGGGTTTAGA-ATTT
*
45637831 AAGGTTTGAGGTTTAGGATTT
1 AAGGTTTG-GGTTTAGAATTT
45637852 AAG
1 AAG
45637855 AATTTGGGGT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
20 12 0.33
21 21 0.58
22 3 0.08
ACGTcount: A:0.23, C:0.02, G:0.34, T:0.42
Consensus pattern (20 bp):
AAGGTTTGGGTTTAGAATTT
Found at i:45637900 original size:34 final size:33
Alignment explanation
Indices: 45637791--45637900 Score: 78
Period size: 34 Copynumber: 3.2 Consensus size: 33
45637781 CTGAGGTTCA
* * ** *
45637791 AGGTTTGGGTTTAGAATTTAAGGTTTTGGGTTCG
1 AGGTTAGGGTTT-GAGTTTAAGGTTAAGGGTTTG
* **
45637825 AGGTTTAAGGTTTGAGGTTT-AGGATTTAAGAATTTG
1 AGG-TTAGGGTTTGA-GTTTAAGG--TTAAGGGTTTG
*
45637861 GGGTTAGGGTTTGAGTTTAAGGTTCAAGGGTTTG
1 AGGTTAGGGTTTGAGTTTAAGGTT-AAGGGTTTG
45637895 AGGTTA
1 AGGTTA
45637901 CGAATTACGA
Statistics
Matches: 57, Mismatches: 13, Indels: 12
0.70 0.16 0.15
Matches are distributed among these distances:
33 2 0.04
34 24 0.42
35 23 0.40
36 8 0.14
ACGTcount: A:0.22, C:0.02, G:0.35, T:0.41
Consensus pattern (33 bp):
AGGTTAGGGTTTGAGTTTAAGGTTAAGGGTTTG
Found at i:45645728 original size:18 final size:18
Alignment explanation
Indices: 45645705--45645741 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
45645695 CACCACCGGA
45645705 GAGCCTAATGGCTCTCCT
1 GAGCCTAATGGCTCTCCT
45645723 GAGCCTAATGGCTCTCCT
1 GAGCCTAATGGCTCTCCT
45645741 G
1 G
45645742 CCTCCGGTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.24, T:0.27
Consensus pattern (18 bp):
GAGCCTAATGGCTCTCCT
Found at i:45646109 original size:151 final size:155
Alignment explanation
Indices: 45645884--45646243 Score: 438
Period size: 154 Copynumber: 2.4 Consensus size: 155
45645874 CTTTAAACAA
* * ** *
45645884 ATTTTTATTTTTCAAAATGTAAACTTT-T-TCATTTTATTAAAAAAACACTGTTTTTCTTAAAGA
1 ATTTTTATTATTCAAAATCTAAACTTTCTCTTTTTTTATTAAAAAAACACTATTTTTCTTAAAGA
* * *
45645947 TTAAAGCTTTTATTTTGAACTAGTT-AAAAAAATCAAAACTGTT-TTTTTAGAAATTTAAAATTT
66 TTAAAGCTTTTACTTTGAAATAGTTAAAAAAAATCAAAAC-GTTGTTTTTAAAAATTTAAAATTT
45646010 CCTTTAAAAT-A-ACTAAAAAAT-AG
130 CCTTTAAAATAATACTAAAAAATCAG
* *
45646033 ATTTTTATTATTCAAAATCTAAACTTTCTCTTTTTTCTTTTAAAAAAA-ATTATTTTTCTTAAAG
1 ATTTTTATTATTCAAAATCTAAACTTTCTCTTTTTT-TATTAAAAAAACACTATTTTTCTTAAAG
*
45646097 ATTAAAGCTTTTACTTTGAAATAGTTGAAAAAAAAATCAAAACGTTGTTTTTAAAAATTTAAACT
65 ATTAAAGCTTTTACTTTGAAATAGTT--AAAAAAAATCAAAACGTTGTTTTTAAAAATTTAAAAT
* *
45646162 TTCCTTTAAAATAAATATTAAAAAATCAT
128 TTCCTTTAAAAT-AATACTAAAAAATCAG
* **
45646191 ATTTTTATTTCTTCAAAATCTAAA-TTT-TCTCCTTTTA--AAAAAAACACTATTTT
1 ATTTTTA-TTATTCAAAATCTAAACTTTCTCTTTTTTTATTAAAAAAACACTATTTT
45646244 CCCAAAATCA
Statistics
Matches: 180, Mismatches: 18, Indels: 20
0.83 0.08 0.09
Matches are distributed among these distances:
149 25 0.14
150 1 0.01
151 42 0.23
152 10 0.06
153 3 0.02
154 49 0.27
155 7 0.04
156 2 0.01
157 15 0.08
158 11 0.06
159 15 0.08
ACGTcount: A:0.41, C:0.10, G:0.04, T:0.44
Consensus pattern (155 bp):
ATTTTTATTATTCAAAATCTAAACTTTCTCTTTTTTTATTAAAAAAACACTATTTTTCTTAAAGA
TTAAAGCTTTTACTTTGAAATAGTTAAAAAAAATCAAAACGTTGTTTTTAAAAATTTAAAATTTC
CTTTAAAATAATACTAAAAAATCAG
Found at i:45647089 original size:42 final size:42
Alignment explanation
Indices: 45647041--45647404 Score: 509
Period size: 42 Copynumber: 8.7 Consensus size: 42
45647031 AGTAAACAGA
*
45647041 CTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGTAC
1 CTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGAAC
*
45647083 CTCCACACCTTGGTCTCTAAATGCAATGAAAAGTGAATGAAC
1 CTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGAAC
45647125 CTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAAT-AAC
1 CTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGAAC
* *
45647166 CTCCACACCTGGGTCTCTAGATGCAATGAAAAGTGAATGGAC
1 CTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGAAC
* * * *
45647208 CTTCACACCTGGGTCTTTAAATGTAATGAAAAGTGAATGGAC
1 CTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGAAC
* * * * *
45647250 CTTCACACCTGAGTCTTTAAATGTAATGAAAAGTGAATGGAC
1 CTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGAAC
* *
45647292 CTCCACACCTAGGTCTCTAGATGCAATGAAAAGTGAATCG-AC
1 CTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAAT-GAAC
** * * *
45647334 CTCCGTACCTAGGTTTCAAAATGCAATGAAAAGTGAAT-AAC
1 CTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGAAC
*
45647375 CTCCACACCTGGGTCTCTAGATGCAATGAA
1 CTCCACACCTGGGTCTCTAAATGCAATGAA
45647405 TGTTTTCCTT
Statistics
Matches: 292, Mismatches: 27, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
41 66 0.23
42 225 0.77
43 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (42 bp):
CTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGAAC
Found at i:45647215 original size:125 final size:126
Alignment explanation
Indices: 45647041--45647404 Score: 534
Period size: 125 Copynumber: 2.9 Consensus size: 126
45647031 AGTAAACAGA
* * *
45647041 CTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGTACCTCCACACCTTGGTCTCTAAATG
1 CTCCACACCTGGGTCTCTAGATGCAATGAAAAGTGAATGGACCTCCACACCTAGGTCTCTAAATG
45647106 CAATGAAAAGTGAATGAACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAAT-AAC
66 CAATGAAAAGTGAATGAACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGAAC
* * *
45647166 CTCCACACCTGGGTCTCTAGATGCAATGAAAAGTGAATGGACCTTCACACCTGGGTCTTTAAATG
1 CTCCACACCTGGGTCTCTAGATGCAATGAAAAGTGAATGGACCTCCACACCTAGGTCTCTAAATG
* * * * * * *
45647231 TAATGAAAAGTGAATGGACCTTCACACCTGAGTCTTTAAATGTAATGAAAAGTGAATGGAC
66 CAATGAAAAGTGAATGAACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGAAC
* * ** * *
45647292 CTCCACACCTAGGTCTCTAGATGCAATGAAAAGTGAATCGACCTCCGTACCTAGGTTTCAAAATG
1 CTCCACACCTGGGTCTCTAGATGCAATGAAAAGTGAATGGACCTCCACACCTAGGTCTCTAAATG
*
45647357 CAATGAAAAGTGAAT-AACCTCCACACCTGGGTCTCTAGATGCAATGAA
66 CAATGAAAAGTGAATGAACCTCCACACCTGGGTCTCTAAATGCAATGAA
45647405 TGTTTTCCTT
Statistics
Matches: 210, Mismatches: 28, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
125 138 0.66
126 72 0.34
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (126 bp):
CTCCACACCTGGGTCTCTAGATGCAATGAAAAGTGAATGGACCTCCACACCTAGGTCTCTAAATG
CAATGAAAAGTGAATGAACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGAAC
Found at i:45647222 original size:167 final size:167
Alignment explanation
Indices: 45647041--45647404 Score: 525
Period size: 167 Copynumber: 2.2 Consensus size: 167
45647031 AGTAAACAGA
*
45647041 CTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGTACCTCCACACCTTG-GTCTCTAAAT
1 CTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCACACC-TGAGTCTCTAAAT
*
45647105 GCAATGAAAAGTGAATGAACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAAT-AACCTC
65 GCAATGAAAAGTGAATGAACCTCCACACCTAGGTCTCTAAATGCAATGAAAAGTGAATCAACCTC
* * * *
45647169 CACACCTGGGTCTCTAGATGCAATGAAAAGTGAATGGAC
130 CACACCTAGGTCTCAAAATGCAATGAAAAGTGAAT-AAC
* * * * *
45647208 CTTCACACCTGGGTCTTTAAATGTAATGAAAAGTGAATGGACCTTCACACCTGAGTCTTTAAATG
1 CTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCACACCTGAGTCTCTAAATG
* * * *
45647273 TAATGAAAAGTGAATGGACCTCCACACCTAGGTCTCTAGATGCAATGAAAAGTGAATCGACCTCC
66 CAATGAAAAGTGAATGAACCTCCACACCTAGGTCTCTAAATGCAATGAAAAGTGAATCAACCTCC
** *
45647338 GTACCTAGGTTTCAAAATGCAATGAAAAGTGAATAAC
131 ACACCTAGGTCTCAAAATGCAATGAAAAGTGAATAAC
*
45647375 CTCCACACCTGGGTCTCTAGATGCAATGAA
1 CTCCACACCTGGGTCTCTAAATGCAATGAA
45647405 TGTTTTCCTT
Statistics
Matches: 173, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
166 2 0.01
167 137 0.79
168 34 0.20
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (167 bp):
CTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCACACCTGAGTCTCTAAATG
CAATGAAAAGTGAATGAACCTCCACACCTAGGTCTCTAAATGCAATGAAAAGTGAATCAACCTCC
ACACCTAGGTCTCAAAATGCAATGAAAAGTGAATAAC
Found at i:45647831 original size:8 final size:8
Alignment explanation
Indices: 45647818--45647879 Score: 65
Period size: 8 Copynumber: 7.8 Consensus size: 8
45647808 ATTTTTTTGG
45647818 TTTCTTTT
1 TTTCTTTT
45647826 TTTC-TTT
1 TTTCTTTT
45647833 TTTC-TTT
1 TTTCTTTT
45647840 TTTCTTTT
1 TTTCTTTT
*
45647848 TGTCTTTT
1 TTTCTTTT
*
45647856 TGTTTTTTT
1 T-TTCTTTT
*
45647865 TTTTTGTTT
1 TTTCT-TTT
45647874 TTTCTT
1 TTTCTT
45647880 GATTTAAGCA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
7 14 0.30
8 20 0.43
9 13 0.28
ACGTcount: A:0.00, C:0.10, G:0.05, T:0.85
Consensus pattern (8 bp):
TTTCTTTT
Found at i:45647835 original size:7 final size:7
Alignment explanation
Indices: 45647818--45647879 Score: 74
Period size: 7 Copynumber: 8.9 Consensus size: 7
45647808 ATTTTTTTGG
45647818 TTTCTTTT
1 TTTC-TTT
45647826 TTTCTTT
1 TTTCTTT
45647833 TTTCTTT
1 TTTCTTT
45647840 TTTCTTT
1 TTTCTTT
45647847 TTGTC-TT
1 TT-TCTTT
*
45647854 TTTGTTT
1 TTTCTTT
45647861 TTT-TTT
1 TTTCTTT
*
45647867 TTTGTTT
1 TTTCTTT
45647874 TTTCTT
1 TTTCTT
45647880 GATTTAAGCA
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
6 7 0.14
7 36 0.73
8 6 0.12
ACGTcount: A:0.00, C:0.10, G:0.05, T:0.85
Consensus pattern (7 bp):
TTTCTTT
Found at i:45650716 original size:50 final size:49
Alignment explanation
Indices: 45650600--45650786 Score: 214
Period size: 50 Copynumber: 3.7 Consensus size: 49
45650590 TGCCTATAAA
* * * * * * *
45650600 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTTTATCGATAGATAATGGT
1 CACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGAAAG-T-TTGGT
* *
45650651 CACATGTGTAGTACTATGTGCAAGCTACTATGTGTACCGAAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGAAAG-TTTGGT
* * *
45650701 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCGAAAAGTTTGAT
1 CACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCG-AAAGTTTGGT
45650751 CACGTGTGTAGTACTATGTG-AAGGCTACTACGTGTA
1 CACGTGTGTAGTACTATGTGCAA-GCTACTACGTGTA
45650787 TTGAATGATA
Statistics
Matches: 117, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
49 1 0.01
50 76 0.65
51 40 0.34
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.31
Consensus pattern (49 bp):
CACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGAAAGTTTGGT
Found at i:45658475 original size:50 final size:50
Alignment explanation
Indices: 45658301--45658495 Score: 230
Period size: 51 Copynumber: 3.9 Consensus size: 50
45658291 CTATAAACAT
* * * *
45658301 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGATAGATAATGGTCAC
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAAGAT-TTGGTCAC
* * * *
45658352 ATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGAAGGCTTTGGTCAC
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAAAGATTTGGTCAC
* * *
45658403 GTGTGTAGTACTATGTCCAGGCTACTACGTGAACCGGAAAG-TTTGATCAC
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAAAGATTTGGTCAC
* * *
45658453 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATT
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAAGATT
45658496 ATAATTACAC
Statistics
Matches: 122, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
49 4 0.03
50 41 0.34
51 73 0.60
52 4 0.03
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (50 bp):
GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAAGATTTGGTCAC
Found at i:45658485 original size:101 final size:102
Alignment explanation
Indices: 45658301--45658485 Score: 257
Period size: 101 Copynumber: 1.8 Consensus size: 102
45658291 CTATAAACAT
* * * * *
45658301 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGATAGATAATGGTCACATGTGTAGTACTAT
1 GTGTGTAGTACTAAGTCCAGGCTACTACGTGAACCGAAAGATAATGATCACATGTGTAGTACTAT
* *
45658366 GTGCAGGCTACTATGTGTACCAGAAGGCTTTGGTCAC
66 GTGAAGGCTACTACGTGTACCAGAAGGCTTTGGTCAC
* * *
45658403 GTGTGTAGTACTATGTCCAGGCTACTACGTGAACCGGAAAG-T-TTGATCACGTGTGTAGTACTA
1 GTGTGTAGTACTAAGTCCAGGCTACTACGTGAACC-GAAAGATAATGATCACATGTGTAGTACTA
45658466 TGTGAAGGCTACTACGTGTA
65 TGTGAAGGCTACTACGTGTA
45658486 TCGAATGATT
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
101 36 0.50
102 32 0.44
103 4 0.06
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (102 bp):
GTGTGTAGTACTAAGTCCAGGCTACTACGTGAACCGAAAGATAATGATCACATGTGTAGTACTAT
GTGAAGGCTACTACGTGTACCAGAAGGCTTTGGTCAC
Found at i:45672879 original size:25 final size:25
Alignment explanation
Indices: 45672851--45672915 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
45672841 CTATTTTTGT
* *
45672851 TAGTATATCCTGAAACTGCTATAGG
1 TAGTATATACTGAAACTACTATAGG
* * *
45672876 TAGTGTATACTGAGACTACTATAGA
1 TAGTATATACTGAAACTACTATAGG
45672901 TAG-ACTATACTGAAA
1 TAGTA-TATACTGAAA
45672916 ACACTCAAGT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (25 bp):
TAGTATATACTGAAACTACTATAGG
Found at i:45680563 original size:153 final size:148
Alignment explanation
Indices: 45680204--45680631 Score: 561
Period size: 150 Copynumber: 2.8 Consensus size: 148
45680194 TATTTCGAAG
* **
45680204 TAGTTAAAAGAAATCAAAACTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATGATTTTAAAAAA
1 TAGTTAAAAAAAATCAAAACTTTGTTTTAAAAATTTAAACTTTCCTTTAAAAT-A-ACTAAAAAA
* * * * ** *
45680269 ATAGATTTTTATTTTTTAAAATCTAAACATTCTCATTTTTTAAAAAATACAATTTTTCTTAAAGA
64 ACAAATTTTTATTTTTCAAAATCTAAACTTTCTCATTTTAAAAAAAAAACAATTTTTCTTAAAGA
* * * *
45680334 TTAAAGTTTTTATTTTGAAG
129 TTAAAGCTTTTACTTTAAAA
*
45680354 TAGTTAAAAAAAATCAAAACTTTATTTTAAAAATTTAAACTTTCCTTTAAAATAACTAAAAAAAA
1 TAGTTAAAAAAAATCAAAACTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATAACT-AAAAAAA
45680419 CAAATTTTTATTTTTCAAAATCTAAACTTTCTCA-TTTAAAAAAAAAACACTATTTTTCTTAAAG
65 CAAATTTTTATTTTTCAAAATCTAAACTTTCTCATTTTAAAAAAAAAACA--ATTTTTCTTAAAG
45680483 ATTAAAGCTTTTACTTTAAAA
128 ATTAAAGCTTTTACTTTAAAA
45680504 TAGTTGAAAAAAAAAATCAAAACTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATAACTAAAAA
1 TAGTT---AAAAAAAATCAAAACTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATAACTAAAAA
* * *
45680569 AACATATTTTTATTTCTTCAAAGTCTAAACTTTCTCCCTTTTTAAAAGAGAAAAACTAATTTT
63 AACAAATTTTTATTT-TTCAAAATCTAAACTTTCT--CATTTTAAAA-A-AAAAAC-AATTTT
45680632 CCCAAAATGA
Statistics
Matches: 246, Mismatches: 19, Indels: 19
0.87 0.07 0.07
Matches are distributed among these distances:
148 13 0.05
149 38 0.15
150 86 0.35
152 19 0.08
153 69 0.28
155 1 0.00
156 7 0.03
157 6 0.02
158 6 0.02
159 1 0.00
ACGTcount: A:0.45, C:0.10, G:0.04, T:0.41
Consensus pattern (148 bp):
TAGTTAAAAAAAATCAAAACTTTGTTTTAAAAATTTAAACTTTCCTTTAAAATAACTAAAAAAAC
AAATTTTTATTTTTCAAAATCTAAACTTTCTCATTTTAAAAAAAAAACAATTTTTCTTAAAGATT
AAAGCTTTTACTTTAAAA
Found at i:45680987 original size:9 final size:9
Alignment explanation
Indices: 45680973--45681007 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
45680963 TAATAGTATT
45680973 TAATAATAG
1 TAATAATAG
45680982 TAATAATAG
1 TAATAATAG
* *
45680991 TGATGATAG
1 TAATAATAG
45681000 TAATAATA
1 TAATAATA
45681008 ATTTGGGCTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.14, T:0.34
Consensus pattern (9 bp):
TAATAATAG
Found at i:45688833 original size:17 final size:16
Alignment explanation
Indices: 45688803--45688837 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
45688793 AATAGGAAGA
*
45688803 AATATATATTAAATTG
1 AATATATATGAAATTG
45688819 AATATCATATGAAATTG
1 AATAT-ATATGAAATTG
45688836 AA
1 AA
45688838 GCAAATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.51, C:0.03, G:0.09, T:0.37
Consensus pattern (16 bp):
AATATATATGAAATTG
Found at i:45699697 original size:16 final size:15
Alignment explanation
Indices: 45699670--45699703 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
45699660 ATAACTAGTA
*
45699670 TATAATTATATTTAT
1 TATAATTATATTAAT
45699685 TATAATATATATTAAT
1 TATAAT-TATATTAAT
45699701 TAT
1 TAT
45699704 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:45700414 original size:25 final size:27
Alignment explanation
Indices: 45700372--45700425 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 27
45700362 TTCTCCTAAA
**
45700372 TTTCAATTTTATTTAATTATTAA-ATT
1 TTTCAATTTTATGGAATTATTAATATT
45700398 TTTCAA-TTTATGGAATTATTAATATT
1 TTTCAATTTTATGGAATTATTAATATT
45700424 TT
1 TT
45700426 ATACTAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (27 bp):
TTTCAATTTTATGGAATTATTAATATT
Found at i:45712572 original size:34 final size:34
Alignment explanation
Indices: 45712529--45712598 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
45712519 TTCAAGAGGA
*
45712529 AAGTTAGAACACCAACACAAAAATCACAACTAAG
1 AAGTTAGAACACCAAAACAAAAATCACAACTAAG
* *
45712563 AAGTTAGAACACCAAAACGAGAATCACAACTAAG
1 AAGTTAGAACACCAAAACAAAAATCACAACTAAG
45712597 AA
1 AA
45712599 ATAAAAGTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.56, C:0.21, G:0.11, T:0.11
Consensus pattern (34 bp):
AAGTTAGAACACCAAAACAAAAATCACAACTAAG
Found at i:45714304 original size:23 final size:23
Alignment explanation
Indices: 45714254--45714298 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
45714244 AAGGCAATGT
*
45714254 TGTAATATCCCGAAAATTACTAC
1 TGTAATACCCCGAAAATTACTAC
45714277 TGTAATACCCCGAAAATTACTA
1 TGTAATACCCCGAAAATTACTA
45714299 TAGTAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (23 bp):
TGTAATACCCCGAAAATTACTAC
Found at i:45715802 original size:44 final size:44
Alignment explanation
Indices: 45715751--45715838 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
45715741 ATATGTGAGT
* *
45715751 CTAGTTTCAGATAAAATTTGTGGATCTTAATTTAGAGTTCTGTA
1 CTAGTTTCAGATAAAATTTGCGGATCTTAATTCAGAGTTCTGTA
45715795 CTAGTTTCAGATAAAATTTGCGGATCTTAATTCAGAGTTCTGTA
1 CTAGTTTCAGATAAAATTTGCGGATCTTAATTCAGAGTTCTGTA
45715839 GCTCAAGATA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.41
Consensus pattern (44 bp):
CTAGTTTCAGATAAAATTTGCGGATCTTAATTCAGAGTTCTGTA
Found at i:45724589 original size:12 final size:13
Alignment explanation
Indices: 45724572--45724600 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
45724562 CTCATACATG
45724572 AATAAATAAA-GC
1 AATAAATAAATGC
45724584 AATAAATAAATGC
1 AATAAATAAATGC
45724597 AATA
1 AATA
45724601 GATATAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:45732257 original size:7 final size:7
Alignment explanation
Indices: 45732245--45732300 Score: 112
Period size: 7 Copynumber: 8.0 Consensus size: 7
45732235 CAAAATTTCG
45732245 TTTCTTT
1 TTTCTTT
45732252 TTTCTTT
1 TTTCTTT
45732259 TTTCTTT
1 TTTCTTT
45732266 TTTCTTT
1 TTTCTTT
45732273 TTTCTTT
1 TTTCTTT
45732280 TTTCTTT
1 TTTCTTT
45732287 TTTCTTT
1 TTTCTTT
45732294 TTTCTTT
1 TTTCTTT
45732301 ATTTTACCAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 49 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTCTTT
Found at i:45733655 original size:17 final size:17
Alignment explanation
Indices: 45733633--45733677 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
45733623 CGATGTTTGA
*
45733633 CTAAAATCACGGTTTTT
1 CTAAAAACACGGTTTTT
*
45733650 C-AAAAACAAAGGTTTTT
1 CTAAAAAC-ACGGTTTTT
45733667 CTAAAAACACG
1 CTAAAAACACG
45733678 AACTGGATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 5 0.22
17 12 0.52
18 6 0.26
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.29
Consensus pattern (17 bp):
CTAAAAACACGGTTTTT
Found at i:45734066 original size:18 final size:20
Alignment explanation
Indices: 45734030--45734067 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
45734020 GGATAATATC
*
45734030 ATATTAAAATTAGATTAAAT
1 ATATTAAAATAAGATTAAAT
45734050 ATATT-AAATAAGA-TAAAT
1 ATATTAAAATAAGATTAAAT
45734068 TAAATAGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 7 0.41
20 5 0.29
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (20 bp):
ATATTAAAATAAGATTAAAT
Found at i:45734265 original size:15 final size:15
Alignment explanation
Indices: 45734235--45734268 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
45734225 TTAACTGCTT
**
45734235 AAAAATAAGTGTTGA
1 AAAAATAAGTACTGA
45734250 AAAAATAAGTACTGA
1 AAAAATAAGTACTGA
45734265 AAAA
1 AAAA
45734269 TTTAGTCTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.03, G:0.15, T:0.21
Consensus pattern (15 bp):
AAAAATAAGTACTGA
Found at i:45735924 original size:24 final size:24
Alignment explanation
Indices: 45735896--45735941 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
45735886 ACCAAAATGA
45735896 CCACATACATATATCAACATAAGG
1 CCACATACATATATCAACATAAGG
45735920 CCACATACATATATCAACATAA
1 CCACATACATATATCAACATAA
45735942 CAACCAATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.48, C:0.26, G:0.04, T:0.22
Consensus pattern (24 bp):
CCACATACATATATCAACATAAGG
Found at i:45735951 original size:24 final size:24
Alignment explanation
Indices: 45735895--45735952 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
45735885 TACCAAAATG
*
45735895 ACCACATACATATATCAACATAAG
1 ACCACATACATATATCAACATAAA
*
45735919 GCCACATACATATATCAACATAACA
1 ACCACATACATATATCAACATAA-A
45735944 ACCA-ATACA
1 ACCACATACA
45735953 AAGCCAAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 27 0.90
25 3 0.10
ACGTcount: A:0.50, C:0.28, G:0.03, T:0.19
Consensus pattern (24 bp):
ACCACATACATATATCAACATAAA
Found at i:45742960 original size:28 final size:28
Alignment explanation
Indices: 45742905--45742961 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
45742895 TAATTTAATA
*
45742905 AATTTATTAATATGATATTTGTACTTTT
1 AATTTATTAATATGATACTTGTACTTTT
*
45742933 AATTTATTTAATAT-AGTACTTGTATTTTT
1 AATTTA-TTAATATGA-TACTTGTACTTTT
45742962 CTTTTGGCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.28
29 18 0.72
ACGTcount: A:0.32, C:0.04, G:0.07, T:0.58
Consensus pattern (28 bp):
AATTTATTAATATGATACTTGTACTTTT
Found at i:45745820 original size:23 final size:23
Alignment explanation
Indices: 45745793--45745837 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
45745783 TTGAAGGACC
45745793 TTGAAAAGACCTTGAAAAAGATA
1 TTGAAAAGACCTTGAAAAAGATA
45745816 TTGAAAAGACCTTGAAAAAGAT
1 TTGAAAAGACCTTGAAAAAGAT
45745838 GTAGAATTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.51, C:0.09, G:0.18, T:0.22
Consensus pattern (23 bp):
TTGAAAAGACCTTGAAAAAGATA
Found at i:45745836 original size:12 final size:11
Alignment explanation
Indices: 45745789--45745833 Score: 63
Period size: 11 Copynumber: 4.0 Consensus size: 11
45745779 AAGTTTGAAG
45745789 GACCTTGAAAA
1 GACCTTGAAAA
45745800 GACCTTGAAAAA
1 GACCTTG-AAAA
**
45745812 GATATTGAAAA
1 GACCTTGAAAA
45745823 GACCTTGAAAA
1 GACCTTGAAAA
45745834 AGATGTAGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
11 20 0.69
12 9 0.31
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (11 bp):
GACCTTGAAAA
Found at i:45746368 original size:30 final size:30
Alignment explanation
Indices: 45746332--45746394 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
45746322 ACAAGAAAGA
45746332 AATGCATAACTTTCC-AGAACTCAATTTTCC
1 AATGCATAAC-TTCCAAGAACTCAATTTTCC
45746362 AATGCATAACTTCCAAGAACTCAATTTTCC
1 AATGCATAACTTCCAAGAACTCAATTTTCC
45746392 AAT
1 AAT
45746395 CTTTCTCAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 4 0.12
30 28 0.88
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.32
Consensus pattern (30 bp):
AATGCATAACTTCCAAGAACTCAATTTTCC
Found at i:45752388 original size:3 final size:3
Alignment explanation
Indices: 45752380--45752411 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
45752370 CATGAAGTGC
45752380 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
45752412 GTACAAGAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:45752497 original size:2 final size:2
Alignment explanation
Indices: 45752485--45752528 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
45752475 AATAAGAAAT
*
45752485 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45752527 TA
1 TA
45752529 AAATTTACCT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:45752790 original size:15 final size:15
Alignment explanation
Indices: 45752770--45752799 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
45752760 AAAAGTAAAG
45752770 ATCTCTTAACTTTTA
1 ATCTCTTAACTTTTA
45752785 ATCTCTTAACTTTTA
1 ATCTCTTAACTTTTA
45752800 CTTGATTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.00, T:0.53
Consensus pattern (15 bp):
ATCTCTTAACTTTTA
Found at i:45753294 original size:2 final size:2
Alignment explanation
Indices: 45753287--45753320 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
45753277 TGCCGGAAAC
45753287 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
45753321 TATTTGTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:45754554 original size:38 final size:39
Alignment explanation
Indices: 45754510--45754586 Score: 147
Period size: 38 Copynumber: 2.0 Consensus size: 39
45754500 TCTTGCCCAG
45754510 ATAGGAATTTTTGTTATTTATTTAGAAG-TAAATATATT
1 ATAGGAATTTTTGTTATTTATTTAGAAGTTAAATATATT
45754548 ATAGGAATTTTTGTTATTTATTTAGAAGTTAAATATATT
1 ATAGGAATTTTTGTTATTTATTTAGAAGTTAAATATATT
45754587 TTAATAATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
38 28 0.74
39 10 0.26
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (39 bp):
ATAGGAATTTTTGTTATTTATTTAGAAGTTAAATATATT
Found at i:45754596 original size:39 final size:38
Alignment explanation
Indices: 45754514--45754596 Score: 130
Period size: 38 Copynumber: 2.2 Consensus size: 38
45754504 GCCCAGATAG
*
45754514 GAATTTTTGTTATTTATTTAGAAGTAAATATATTATAG
1 GAATTTTTGTTATTTATTTAGAAGTAAATATATTATAA
*
45754552 GAATTTTTGTTATTTATTTAGAAGTTAAATATATTTTAA
1 GAATTTTTGTTATTTATTTAGAAG-TAAATATATTATAA
*
45754591 TAATTT
1 GAATTT
45754597 ATCTTGATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
38 24 0.59
39 17 0.41
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.53
Consensus pattern (38 bp):
GAATTTTTGTTATTTATTTAGAAGTAAATATATTATAA
Found at i:45754989 original size:22 final size:23
Alignment explanation
Indices: 45754964--45755007 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
45754954 TTATTTTTTA
45754964 TTTATTTTTTAAT-TAATAAATT
1 TTTATTTTTTAATATAATAAATT
*
45754986 TTTATTTTTTTATATAATAAAT
1 TTTATTTTTTAATATAATAAAT
45755008 ATGTAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTATTTTTTAATATAATAAATT
Found at i:45755003 original size:27 final size:26
Alignment explanation
Indices: 45754958--45755008 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
45754948 GTTATTTTAT
*
45754958 TTTTTATTTATTTTTTAATTAATAAA
1 TTTTTATTTATTTTTTAATAAATAAA
45754984 TTTTTATTT-TTTTATATAATAAATA
1 TTTTTATTTATTTT-T-TAATAAATA
45755009 TGTAATTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 4 0.18
26 10 0.45
27 8 0.36
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (26 bp):
TTTTTATTTATTTTTTAATAAATAAA
Found at i:45755101 original size:19 final size:20
Alignment explanation
Indices: 45755079--45755120 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
45755069 TATATAAAAA
45755079 ATAAT-AAAAAATATTTTAT
1 ATAATGAAAAAATATTTTAT
**
45755098 ATAATGAAACCATATTTTAT
1 ATAATGAAAAAATATTTTAT
45755118 ATA
1 ATA
45755121 TACCATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.40
Consensus pattern (20 bp):
ATAATGAAAAAATATTTTAT
Found at i:45755353 original size:45 final size:45
Alignment explanation
Indices: 45755265--45755411 Score: 168
Period size: 45 Copynumber: 3.2 Consensus size: 45
45755255 TTATAAAATC
* * *
45755265 AAATAATTATTTCAAATATCATTATTATTTTTATATGTAAAATATTTT
1 AAATAATTATTCCAAATA-C--CATTATTTTTATATGTGAAATATTTT
* * *
45755313 AAATACTTATTCCAAATACCATTATTTTTATGTGTGAAATATTTC
1 AAATAATTATTCCAAATACCATTATTTTTATATGTGAAATATTTT
* * * * *
45755358 AATTAATTATTTCAAATATCACTATTATTATATGTGAAATATTTT
1 AAATAATTATTCCAAATACCATTATTTTTATATGTGAAATATTTT
45755403 AAATAATTA
1 AAATAATTA
45755412 ATTCACATAC
Statistics
Matches: 84, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
45 67 0.80
47 1 0.01
48 16 0.19
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.48
Consensus pattern (45 bp):
AAATAATTATTCCAAATACCATTATTTTTATATGTGAAATATTTT
Found at i:45756492 original size:27 final size:28
Alignment explanation
Indices: 45756440--45756492 Score: 65
Period size: 27 Copynumber: 1.9 Consensus size: 28
45756430 AGTTAATAAA
**
45756440 TTCTCTTTGAGTTTTTCTTTTCAAGAAT
1 TTCTCTTTGAGTTTTTCTTTAAAAGAAT
45756468 TTCTC-TTGAGTATTTT-TTTAAAAGA
1 TTCTCTTTGAGT-TTTTCTTTAAAAGA
45756493 GTTTTAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 13 0.59
28 9 0.41
ACGTcount: A:0.23, C:0.11, G:0.11, T:0.55
Consensus pattern (28 bp):
TTCTCTTTGAGTTTTTCTTTAAAAGAAT
Found at i:45759023 original size:26 final size:25
Alignment explanation
Indices: 45758970--45759046 Score: 70
Period size: 26 Copynumber: 3.1 Consensus size: 25
45758960 ATGACCGTAA
* *
45758970 TGCCCCTAGAGGGTAAATGACT-ATTT
1 TGCCCCT-GAGGTTAAATGATTGA-TT
45758996 TGCCCCTCGAGGTTAAATGATTGATT
1 TGCCCCT-GAGGTTAAATGATTGATT
* *
45759022 TG--TCTGTGGTTAAATGATTGATT
1 TGCCCCTGAGGTTAAATGATTGATT
45759045 TG
1 TG
45759047 TCTGTGTTTG
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
23 19 0.42
24 2 0.04
26 23 0.51
27 1 0.02
ACGTcount: A:0.23, C:0.14, G:0.25, T:0.38
Consensus pattern (25 bp):
TGCCCCTGAGGTTAAATGATTGATT
Found at i:45759036 original size:23 final size:23
Alignment explanation
Indices: 45759006--45759076 Score: 97
Period size: 23 Copynumber: 3.0 Consensus size: 23
45758996 TGCCCCTCGA
45759006 GGTTAAATGATTGATTTGTCTGT
1 GGTTAAATGATTGATTTGTCTGT
45759029 GGTTAAATGATTGATTTGTCTGT
1 GGTTAAATGATTGATTTGTCTGT
* ** *
45759052 GTTTGGTATGACTGATTTGTCTGT
1 GGTT-AAATGATTGATTTGTCTGT
45759076 G
1 G
45759077 ATTTGAATGA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
23 26 0.60
24 17 0.40
ACGTcount: A:0.18, C:0.06, G:0.28, T:0.48
Consensus pattern (23 bp):
GGTTAAATGATTGATTTGTCTGT
Found at i:45759067 original size:24 final size:23
Alignment explanation
Indices: 45759011--45759092 Score: 101
Period size: 24 Copynumber: 3.5 Consensus size: 23
45759001 CTCGAGGTTA
* * *
45759011 AATGATTGATTTGTCTGTGGTTA
1 AATGACTGATTTGTCTGTGTTTG
*
45759034 AATGATTGATTTGTCTGTGTTTGG
1 AATGACTGATTTGTCTGTGTTT-G
*
45759058 TATGACTGATTTGTCTGTGATTTG
1 AATGACTGATTTGTCTGTG-TTTG
45759082 AATGACTGATT
1 AATGACTGATT
45759093 CTGAGCATGG
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
23 21 0.40
24 28 0.54
25 3 0.06
ACGTcount: A:0.21, C:0.06, G:0.26, T:0.48
Consensus pattern (23 bp):
AATGACTGATTTGTCTGTGTTTG
Found at i:45759338 original size:32 final size:32
Alignment explanation
Indices: 45759270--45759360 Score: 94
Period size: 32 Copynumber: 2.9 Consensus size: 32
45759260 ATGCTACTGT
* * * * *
45759270 TGGCTTTGTGCCGGTCATAGTACCGTTGCTAT
1 TGGCTTTGTGCCGATCATATTACCGTTACCAA
45759302 TGGCTTTGTGCCGATCATATTACCGTTACCAA
1 TGGCTTTGTGCCGATCATATTACCGTTACCAA
* * * *
45759334 TGGCTATGCGCCGA-CATTTTACTGTTA
1 TGGCTTTGTGCCGATCATATTACCGTTA
45759361 TTCATGGCTG
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
31 11 0.22
32 39 0.78
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (32 bp):
TGGCTTTGTGCCGATCATATTACCGTTACCAA
Found at i:45759514 original size:22 final size:21
Alignment explanation
Indices: 45759489--45759553 Score: 51
Period size: 22 Copynumber: 3.0 Consensus size: 21
45759479 ATTACTATAC
45759489 TTATGGCTTGTAGTCATTCTGT
1 TTATGGCTT-TAGTCATTCTGT
* * *
45759511 TTATAGCTTATAG-CTATCCTAT
1 TTATGGCTT-TAGTC-ATTCTGT
*
45759533 TTATGACTCTTAGTCATTCTG
1 TTATGGCT-TTAGTCATTCTG
45759554 ACTACTAGCA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
21 1 0.03
22 29 0.91
23 2 0.06
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (21 bp):
TTATGGCTTTAGTCATTCTGT
Found at i:45765689 original size:18 final size:19
Alignment explanation
Indices: 45765666--45765702 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
45765656 TTGACATATC
*
45765666 AAAATTAT-ATATAAATAA
1 AAAATTATCATAAAAATAA
45765684 AAAATTATCATAAAAATAA
1 AAAATTATCATAAAAATAA
45765703 GAAGTTAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (19 bp):
AAAATTATCATAAAAATAA
Found at i:45768630 original size:14 final size:14
Alignment explanation
Indices: 45768611--45768638 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
45768601 TAAAATTATA
45768611 TTTAATAATTCATT
1 TTTAATAATTCATT
45768625 TTTAATAATTCATT
1 TTTAATAATTCATT
45768639 AATAAACTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:45777511 original size:22 final size:22
Alignment explanation
Indices: 45777449--45777534 Score: 118
Period size: 22 Copynumber: 3.9 Consensus size: 22
45777439 ATTGTTCAAA
* **
45777449 CATGAGAGCTTAGTACGTGAAA
1 CATGAGAGCTTAGTACGTTAGC
45777471 CATGAGAGCTTAGTACGTTAGC
1 CATGAGAGCTTAGTACGTTAGC
45777493 CATGAGAGCTTAGTACGTTAGC
1 CATGAGAGCTTAGTACGTTAGC
* * *
45777515 CATGAGGGTTTAGTTCGTTA
1 CATGAGAGCTTAGTACGTTA
45777535 AACATGCACA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 58 1.00
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (22 bp):
CATGAGAGCTTAGTACGTTAGC
Found at i:45781805 original size:17 final size:17
Alignment explanation
Indices: 45781766--45781808 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
45781756 CTTTTTATCC
45781766 TATATAT-TTTTATATA
1 TATATATATTTTATATA
**
45781782 CCT-TATATTTTATATA
1 TATATATATTTTATATA
45781798 TATATATATTT
1 TATATATATTT
45781809 ATGCATTTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
15 3 0.14
16 11 0.52
17 7 0.33
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (17 bp):
TATATATATTTTATATA
Found at i:45788090 original size:20 final size:20
Alignment explanation
Indices: 45788065--45788170 Score: 81
Period size: 20 Copynumber: 5.3 Consensus size: 20
45788055 TAAATGCGTT
45788065 CAGGGGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
* * * *
45788085 CAGGGGCA-CGTATGTGCAAT
1 CAGGGGTACCG-AAGTACAAA
* *
45788105 CATGGGTACCGAAGTATAAA
1 CAGGGGTACCGAAGTACAAA
** * *
45788125 CAAGGGG-ACATATGTGCAAA
1 C-AGGGGTACCGAAGTACAAA
*
45788145 CAGGGGTGCCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
45788165 CAGGGG
1 CAGGGG
45788171 CACGTATGTG
Statistics
Matches: 61, Mismatches: 21, Indels: 8
0.68 0.23 0.09
Matches are distributed among these distances:
19 7 0.11
20 48 0.79
21 6 0.10
ACGTcount: A:0.35, C:0.18, G:0.33, T:0.14
Consensus pattern (20 bp):
CAGGGGTACCGAAGTACAAA
Found at i:45788112 original size:40 final size:40
Alignment explanation
Indices: 45788068--45788188 Score: 181
Period size: 40 Copynumber: 3.0 Consensus size: 40
45788058 ATGCGTTCAG
45788068 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAT
1 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAT
* * * *
45788108 GGGTACCGAAGTATAAACAAGGGG-ACATATGTGCAAACAG
1 GGGTACCGAAGTACAAAC-AGGGGCACGTATGTGCAATCAT
*
45788148 GGGTGCCGAAGTACAAACAGGGGCACGTATGTGCAATCAT
1 GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAT
45788188 G
1 G
45788189 CAATAATTAA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
39 5 0.07
40 60 0.86
41 5 0.07
ACGTcount: A:0.34, C:0.18, G:0.31, T:0.17
Consensus pattern (40 bp):
GGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAT
Found at i:45790615 original size:27 final size:27
Alignment explanation
Indices: 45790585--45790645 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 27
45790575 TTTAATAGTA
* *
45790585 ACAGTACCGTGTGGGCCTTAGCCCAAT
1 ACAGTACAGTGTGGGCCTAAGCCCAAT
* *
45790612 ACAGAAACAGTGTGGGCCTAAGCCCGAT
1 ACAG-TACAGTGTGGGCCTAAGCCCAAT
*
45790640 ATAGTA
1 ACAGTA
45790646 TCAATATGGT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.30, C:0.25, G:0.26, T:0.20
Consensus pattern (27 bp):
ACAGTACAGTGTGGGCCTAAGCCCAAT
Found at i:45790890 original size:32 final size:32
Alignment explanation
Indices: 45790835--45791197 Score: 476
Period size: 32 Copynumber: 11.4 Consensus size: 32
45790825 GAATGGCTAC
* *
45790835 AAGCCATAAGT-ACAGTAATATGATTGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* * *
45790866 AAGCCATCAGTAGCAGTGATATGATCGGCAGA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* * * * *
45790898 CAGCCATCAATAACGGTAATATGATTGGTACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
*
45790930 AAGCCATCAGTAACGGTAATATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
**
45790962 AAGCCATCAGTAATGGTAATATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* *
45790994 AAGCCATCAGTAACGGTATTATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* * * *
45791026 AAGCCATCAGTAATAGTAATATAATTGGCACC
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
** *
45791058 AAGCCATCAGTAATGGTAATATGATCGACACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
*
45791090 AAGCCATCAGTAACAGTAATATGATCGACACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
*
45791122 AAGCCATCAGTAACAGTAATATGATCGACACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* **
45791154 AAGCCATCAATAACAGTAATATGATTAGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
45791186 AAGCCATCAGTA
1 AAGCCATCAGTA
45791198 GCATTGCAGC
Statistics
Matches: 293, Mismatches: 38, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
31 10 0.03
32 283 0.97
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.21
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTAATATGATCGGCACA
Found at i:45791217 original size:26 final size:26
Alignment explanation
Indices: 45791188--45791244 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
45791178 TTAGCACAAA
* * * *
45791188 GCCATCAGTAGCATTGCAGCAAAGCT
1 GCCAGCAGCAGCATCGCAACAAAGCT
*
45791214 GCCAGCAGCAGTATCGCAACAAAGCT
1 GCCAGCAGCAGCATCGCAACAAAGCT
45791240 GCCAG
1 GCCAG
45791245 TAATAGTATA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.30, G:0.25, T:0.14
Consensus pattern (26 bp):
GCCAGCAGCAGCATCGCAACAAAGCT
Found at i:45791271 original size:27 final size:27
Alignment explanation
Indices: 45791241--45791296 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
45791231 AACAAAGCTG
45791241 CCAGTAATAGT-ATATGTGGCCA-AGCCA
1 CCAGTAATAGTGAT-TGTGG-CAGAGCCA
45791268 CCAGTAATAGTGATTGTGGCAGAGCCA
1 CCAGTAATAGTGATTGTGGCAGAGCCA
45791295 CC
1 CC
45791297 GGTACAGTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
26 2 0.07
27 23 0.85
28 2 0.07
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.21
Consensus pattern (27 bp):
CCAGTAATAGTGATTGTGGCAGAGCCA
Found at i:45791501 original size:27 final size:27
Alignment explanation
Indices: 45791460--45791613 Score: 193
Period size: 27 Copynumber: 5.7 Consensus size: 27
45791450 TTAACCTCGA
* *
45791460 GGGTGTTACGATCATTTTACCCTACAG
1 GGGTATTACGGTCATTTTACCCTACAG
* * *
45791487 GGGCATTACAGTCATTTTACCTTACAG
1 GGGTATTACGGTCATTTTACCCTACAG
45791514 GGGTATTACGGTCATTTTACCCTACAG
1 GGGTATTACGGTCATTTTACCCTACAG
* * *
45791541 GGGCATTACGGTCATTTTACCATATAG
1 GGGTATTACGGTCATTTTACCCTACAG
* * *
45791568 GGGTATTACAGTCA-TTTACCTTACAA
1 GGGTATTACGGTCATTTTACCCTACAG
*
45791594 GGGTATTACGGTTATTTTAC
1 GGGTATTACGGTCATTTTAC
45791614 AACCTTTTCG
Statistics
Matches: 108, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 21 0.19
27 87 0.81
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (27 bp):
GGGTATTACGGTCATTTTACCCTACAG
Found at i:45793693 original size:30 final size:28
Alignment explanation
Indices: 45793659--45793714 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
45793649 TCATAATGAA
* *
45793659 ATATATTTAATATATTTTTATTATATAATT
1 ATATAATTAATAT-TTTAT-TTATATAATT
45793689 ATATAATTAATATTTTATTTATATAA
1 ATATAATTAATATTTTATTTATATAA
45793715 ATAAAAGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 8 0.33
29 4 0.17
30 12 0.50
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (28 bp):
ATATAATTAATATTTTATTTATATAATT
Found at i:45796314 original size:102 final size:102
Alignment explanation
Indices: 45796081--45796423 Score: 453
Period size: 102 Copynumber: 3.4 Consensus size: 102
45796071 CTTTTATCAT
* * * * *
45796081 TCGATACA-GTAGTAGCCTTCACATAGTACTACAAACGTGATC-AAG-TTTTTCGGTTCACATAT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTT-GGTACACATAC
* * *
45796143 TAGCCTTCACATAGTACTACACACGTGATCA-AATTTTA
65 TAGCCTTCACTTAGTACTACACATGTGACCATAA-TTTA
* * * * *
45796181 T-GGTTCACGTAGTAGCCTTCACATAGTACTACACACATGACCAAAGCTTTTTGGTACACATAGT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTTGGTACACATACT
*
45796245 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATAATTTA
* * * *
45796282 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTCT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTTGGTACACATACT
*
45796347 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATAATTTA
*
45796384 TCGATACACGTAGTAGCCTTCACACAATACTACACACGTG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
45796424 TTCGTCGATA
Statistics
Matches: 217, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
99 4 0.02
100 32 0.15
101 45 0.21
102 136 0.63
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (102 bp):
TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTTGGTACACATACT
AGCCTTCACTTAGTACTACACATGTGACCATAATTTA
Done.