Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62175169
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 981721 characters in sequence are not A, C, G, or T
File 150 of 202
Found at i:46808486 original size:7 final size:7
Alignment explanation
Indices: 46808465--46808550 Score: 87
Period size: 7 Copynumber: 13.0 Consensus size: 7
46808455 GATCAGGGAG
46808465 GAAGAAA
1 GAAGAAA
46808472 G-A-AAA
1 GAAGAAA
46808477 GAAGAAA
1 GAAGAAA
*
46808484 GAAAAAA
1 GAAGAAA
46808491 GAAGAAA
1 GAAGAAA
*
46808498 -AAGAGA
1 GAAGAAA
46808504 -AAGAAA
1 GAAGAAA
46808510 GAAGAAA
1 GAAGAAA
46808517 GAAG-AA
1 GAAGAAA
46808523 GAAGAAA
1 GAAGAAA
46808530 GAAAGAAA
1 G-AAGAAA
46808538 -AAGGAAA
1 GAA-GAAA
46808545 -AAGAAA
1 GAAGAAA
46808551 AATAAAAAAA
Statistics
Matches: 69, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
5 4 0.06
6 24 0.35
7 35 0.51
8 6 0.09
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (7 bp):
GAAGAAA
Found at i:46808524 original size:17 final size:17
Alignment explanation
Indices: 46808465--46808550 Score: 81
Period size: 17 Copynumber: 5.0 Consensus size: 17
46808455 GATCAGGGAG
46808465 GAAGAAAGAAAAGAAGAAA
1 GAAGAAAG--AAGAAGAAA
*
46808484 GAAAAAAGAAGAA-AAA
1 GAAGAAAGAAGAAGAAA
46808500 G-AGAAAGAAAGAAGAAA
1 GAAGAAAG-AAGAAGAAA
46808517 GAAG-AAGAAGAAAGAAA
1 GAAGAAAGAAG-AAGAAA
*
46808534 GAA-AAAGGAAAAAGAAA
1 GAAGAAA-GAAGAAGAAA
46808551 AATAAAAAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
15 5 0.09
16 12 0.21
17 29 0.50
18 5 0.09
19 7 0.12
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (17 bp):
GAAGAAAGAAGAAGAAA
Found at i:46808552 original size:7 final size:7
Alignment explanation
Indices: 46808469--46808567 Score: 69
Period size: 7 Copynumber: 13.4 Consensus size: 7
46808459 AGGGAGGAAG
46808469 AAAGAAA
1 AAAGAAA
46808476 AGAAGAAA
1 A-AAGAAA
46808484 GAAA-AAA
1 -AAAGAAA
*
46808491 GAAGAAA
1 AAAGAAA
46808498 AAGAGAAA
1 AA-AGAAA
*
46808506 GAAAGAAG
1 -AAAGAAA
46808514 AAAGAAGA
1 AAAGAA-A
46808522 AGAAGAAA
1 A-AAGAAA
46808530 GAAAG-AA
1 -AAAGAAA
*
46808537 AAAGGAA
1 AAAGAAA
46808544 AAAGAAA
1 AAAGAAA
46808551 AATA-AAA
1 AA-AGAAA
*
46808558 AAATAAA
1 AAAGAAA
46808565 AAA
1 AAA
46808568 ATAAAATTTT
Statistics
Matches: 76, Mismatches: 5, Indels: 22
0.74 0.05 0.21
Matches are distributed among these distances:
6 7 0.09
7 37 0.49
8 23 0.30
9 9 0.12
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (7 bp):
AAAGAAA
Found at i:46808573 original size:7 final size:8
Alignment explanation
Indices: 46808548--46808573 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
46808538 AAGGAAAAAG
46808548 AAAAATAA
1 AAAAATAA
46808556 AAAAATAA
1 AAAAATAA
46808564 AAAAATAA
1 AAAAATAA
46808572 AA
1 AA
46808574 TTTTTTCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAATAA
Found at i:46808803 original size:21 final size:23
Alignment explanation
Indices: 46808777--46808821 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 23
46808767 CAGCAGGCCC
46808777 CAGGCCCA-CCAGCA-GCACCAG
1 CAGGCCCACCCAGCACGCACCAG
*
46808798 CAGGCCCACCCCGCACGCACCAG
1 CAGGCCCACCCAGCACGCACCAG
46808821 C
1 C
46808822 CCAACAGGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.38
22 5 0.24
23 8 0.38
ACGTcount: A:0.24, C:0.53, G:0.22, T:0.00
Consensus pattern (23 bp):
CAGGCCCACCCAGCACGCACCAG
Found at i:46809223 original size:18 final size:19
Alignment explanation
Indices: 46809197--46809246 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
46809187 AATCTCATGA
46809197 TTTCAAAAAAATTTC-TATC
1 TTTC-AAAAAATTTCGTATC
** *
46809216 TTTCAAAATTTTTCGTGTC
1 TTTCAAAAAATTTCGTATC
46809235 -TTCAAAAAATTT
1 TTTCAAAAAATTT
46809247 TTTTCGTGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.36, C:0.14, G:0.04, T:0.46
Consensus pattern (19 bp):
TTTCAAAAAATTTCGTATC
Found at i:46809245 original size:20 final size:19
Alignment explanation
Indices: 46809220--46809283 Score: 74
Period size: 20 Copynumber: 3.2 Consensus size: 19
46809210 TCTATCTTTC
46809220 AAAATTTTTCGTGTCTTCAA
1 AAAATTTTTCGTGT-TTCAA
46809240 AAAATTTTTTTCGTGTTTCAA
1 AAAA--TTTTTCGTGTTTCAA
* *
46809261 AAAATTATTCATGTTTTCAA
1 AAAATTTTTCGTG-TTTCAA
46809281 AAA
1 AAA
46809284 TAAGGCAGCG
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 7 0.18
20 13 0.33
21 9 0.23
22 10 0.26
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.45
Consensus pattern (19 bp):
AAAATTTTTCGTGTTTCAA
Found at i:46809259 original size:21 final size:22
Alignment explanation
Indices: 46809224--46809266 Score: 79
Period size: 21 Copynumber: 2.0 Consensus size: 22
46809214 TCTTTCAAAA
46809224 TTTTTCGTGTCTTCAAAAAATT
1 TTTTTCGTGTCTTCAAAAAATT
46809246 TTTTTCGTGT-TTCAAAAAATT
1 TTTTTCGTGTCTTCAAAAAATT
46809267 ATTCATGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.28, C:0.12, G:0.09, T:0.51
Consensus pattern (22 bp):
TTTTTCGTGTCTTCAAAAAATT
Found at i:46809283 original size:21 final size:21
Alignment explanation
Indices: 46809220--46809283 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
46809210 TCTATCTTTC
*
46809220 AAAATTTTTCGTGTCTTCAAA
1 AAAATTTTTCGTGTTTTCAAA
*
46809241 AAATTTTTTTCGTG-TTTC-AA
1 AAA-ATTTTTCGTGTTTTCAAA
* *
46809261 AAAATTATTCATGTTTTCAAA
1 AAAATTTTTCGTGTTTTCAAA
46809282 AA
1 AA
46809284 TAAGGCAGCG
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
19 7 0.20
20 9 0.26
21 10 0.29
22 9 0.26
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.45
Consensus pattern (21 bp):
AAAATTTTTCGTGTTTTCAAA
Found at i:46809422 original size:18 final size:18
Alignment explanation
Indices: 46809401--46809679 Score: 149
Period size: 17 Copynumber: 15.9 Consensus size: 18
46809391 TTTGTGTAAA
46809401 AAAAATTTCTCGTGTTTC
1 AAAAATTTCTCGTGTTTC
*
46809419 AAAAATTT-TCGTGTTTT
1 AAAAATTTCTCGTGTTTC
*
46809436 AAAAAATTCTCGTGTTTTC
1 AAAAATTTCTCGTG-TTTC
*
46809455 AAAAATTTC-AGTGTTTC
1 AAAAATTTCTCGTGTTTC
*
46809472 AAAAA-TTCCCGTGTTT-
1 AAAAATTTCTCGTGTTTC
*
46809488 AAAAATTTAT-GTGTTTTC
1 AAAAATTTCTCGTG-TTTC
*
46809506 AAAAATTT-TCGTATTTTC
1 AAAAATTTCTCGT-GTTTC
**** * *
46809524 AAAAAAAAATTGTGTTTT
1 AAAAATTTCTCGTGTTTC
* * *
46809542 AAAAA-TCCACGTGTTTTT
1 AAAAATTTCTCGTG-TTTC
*
46809560 AAAAATTT-TGGTGTTTC
1 AAAAATTTCTCGTGTTTC
* *
46809577 AAAAATCT-TCGTGTTTTT
1 AAAAATTTCTCGTG-TTTC
*
46809595 AAAAA-TTC-CGGTGATTC
1 AAAAATTTCTC-GTGTTTC
*
46809612 --AAATTTTTCGTGTTTTC
1 AAAAATTTCTCGTG-TTTC
* *
46809629 TAAAAATTT-TTGTGCTTC
1 -AAAAATTTCTCGTGTTTC
* *
46809647 AAAAAATT-TCGTTTTTC
1 AAAAATTTCTCGTGTTTC
*
46809664 ACAAATTTC-CGTGTTT
1 AAAAATTTCTCGTGTTT
46809680 TCAATGACTC
Statistics
Matches: 199, Mismatches: 41, Indels: 43
0.70 0.14 0.15
Matches are distributed among these distances:
15 3 0.02
16 16 0.08
17 86 0.43
18 69 0.35
19 19 0.10
20 6 0.03
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (18 bp):
AAAAATTTCTCGTGTTTC
Found at i:46809430 original size:17 final size:17
Alignment explanation
Indices: 46809401--46809679 Score: 174
Period size: 18 Copynumber: 15.9 Consensus size: 17
46809391 TTTGTGTAAA
46809401 AAAAATTTCTCGTGTTTC
1 AAAAATTT-TCGTGTTTC
*
46809419 AAAAATTTTCGTGTTTTA
1 AAAAATTTTCGTG-TTTC
*
46809437 AAAAATTCTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
46809455 AAAAA-TTTCAGTGTTTC
1 AAAAATTTTC-GTGTTTC
**
46809472 AAAAATTCCCGTGTTT-
1 AAAAATTTTCGTGTTTC
46809488 AAAAATTTAT-GTGTTTTC
1 AAAAATTT-TCGTG-TTTC
*
46809506 AAAAATTTTCGTATTTTC
1 AAAAATTTTCGT-GTTTC
** *
46809524 AAAAAAAAATT-GTGTTTT
1 --AAAAATTTTCGTGTTTC
*** *
46809542 AAAAATCCACGTGTTTTT
1 AAAAATTTTCGTG-TTTC
*
46809560 AAAAATTTTGGTGTTTC
1 AAAAATTTTCGTGTTTC
* *
46809577 AAAAATCTTCGTGTTTTT
1 AAAAATTTTCGTG-TTTC
* *
46809595 AAAAA-TTCCGGTGATTC
1 AAAAATTTTC-GTGTTTC
*
46809612 -AAATTTTTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
* *
46809629 TAAAAATTTTTGTGCTTC
1 -AAAAATTTTCGTGTTTC
* *
46809647 AAAAAATTTCGTTTTTC
1 AAAAATTTTCGTGTTTC
* *
46809664 ACAAATTTCCGTGTTT
1 AAAAATTTTCGTGTTT
46809680 TCAATGACTC
Statistics
Matches: 200, Mismatches: 43, Indels: 37
0.71 0.15 0.13
Matches are distributed among these distances:
16 21 0.10
17 79 0.40
18 81 0.41
19 12 0.06
20 7 0.04
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (17 bp):
AAAAATTTTCGTGTTTC
Found at i:46809447 original size:35 final size:36
Alignment explanation
Indices: 46809400--46809680 Score: 178
Period size: 35 Copynumber: 8.0 Consensus size: 36
46809390 GTTTGTGTAA
46809400 AAAAAATTTCTCGTG-TTTCAAAAATTTTCGTGTTTT
1 AAAAAA-TTCTCGTGTTTTCAAAAATTTTCGTGTTTT
46809436 AAAAAATTCTCGTGTTTTCAAAAA-TTTCAGTG-TTT
1 AAAAAATTCTCGTGTTTTCAAAAATTTTC-GTGTTTT
* *
46809471 CAAAAATTCCCGTG-TTT-AAAAATTTAT-GTGTTTT
1 AAAAAATTCTCGTGTTTTCAAAAATTT-TCGTGTTTT
* * * **
46809505 CAAAAATTTTCGTATTTTCAAAAAAAAATT-GTGTTTT
1 AAAAAATTCTCGTGTTTTC--AAAAATTTTCGTGTTTT
* * * *
46809542 -AAAAATCCACGTGTTTTTAAAAATTTTGGTG-TTT
1 AAAAAATTCTCGTGTTTTCAAAAATTTTCGTGTTTT
* * * *
46809576 CAAAAA-TCTTCGTGTTTTTAAAAA-TTCCG-GTGATT
1 AAAAAATTC-TCGTGTTTTCAAAAATTTTCGTGT-TTT
* * * * * *
46809611 -CAAATTTTTCGTGTTTTCTAAAAATTTTTGTGCTTC
1 AAAAAATTCTCGTGTTTTC-AAAAATTTTCGTGTTTT
* *
46809647 AAAAAATT-TCGT-TTTTCACAAATTTCCGTGTTTT
1 AAAAAATTCTCGTGTTTTCAAAAATTTTCGTGTTTT
46809681 CAATGACTCT
Statistics
Matches: 191, Mismatches: 35, Indels: 40
0.72 0.13 0.15
Matches are distributed among these distances:
33 9 0.05
34 57 0.30
35 66 0.35
36 39 0.20
37 14 0.07
38 6 0.03
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (36 bp):
AAAAAATTCTCGTGTTTTCAAAAATTTTCGTGTTTT
Found at i:46809669 original size:16 final size:18
Alignment explanation
Indices: 46809650--46809682 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
46809640 GTGCTTCAAA
46809650 AAATTT-CGT-TTTTCAC
1 AAATTTCCGTGTTTTCAC
46809666 AAATTTCCGTGTTTTCA
1 AAATTTCCGTGTTTTCA
46809683 ATGACTCTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 3 0.20
18 6 0.40
ACGTcount: A:0.24, C:0.18, G:0.09, T:0.48
Consensus pattern (18 bp):
AAATTTCCGTGTTTTCAC
Found at i:46809758 original size:17 final size:17
Alignment explanation
Indices: 46809738--46809806 Score: 68
Period size: 17 Copynumber: 3.9 Consensus size: 17
46809728 TTGTTTTTTG
46809738 AAAAATTCTCGTGTTTC
1 AAAAATTCTCGTGTTTC
*
46809755 AAAAATTCTCGTGTTTTTAAA
1 AAAAATTCTCGTG--TTT--C
46809776 AAAAATT-TCGTGTTTC
1 AAAAATTCTCGTGTTTC
* *
46809792 TAAAATTTTCGTGTT
1 AAAAATTCTCGTGTT
46809807 CGAAGATTTC
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
16 6 0.14
17 20 0.45
18 3 0.07
19 3 0.07
20 5 0.11
21 7 0.16
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.45
Consensus pattern (17 bp):
AAAAATTCTCGTGTTTC
Found at i:46809777 original size:35 final size:34
Alignment explanation
Indices: 46809732--46809806 Score: 87
Period size: 37 Copynumber: 2.1 Consensus size: 34
46809722 AAAAAATTGT
46809732 TTTTTGAAAAATTCTCGTGTTTCAAAAATTCTCGTG
1 TTTTT-AAAAATT-TCGTGTTTCAAAAATTCTCGTG
* *
46809768 TTTTTAAAAAAAATTTCGTGTTTCTAAAATTTTCGTG
1 TTTTT---AAAAATTTCGTGTTTCAAAAATTCTCGTG
46809805 TT
1 TT
46809807 CGAAGATTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 5 0.15
37 22 0.65
38 7 0.21
ACGTcount: A:0.29, C:0.11, G:0.12, T:0.48
Consensus pattern (34 bp):
TTTTTAAAAATTTCGTGTTTCAAAAATTCTCGTG
Found at i:46809795 original size:20 final size:21
Alignment explanation
Indices: 46809738--46809796 Score: 74
Period size: 17 Copynumber: 3.0 Consensus size: 21
46809728 TTGTTTTTTG
46809738 AAAAATTCTCGTGTTTC----
1 AAAAATTCTCGTGTTTCTAAA
*
46809755 AAAAATTCTCGTGTTTTTAAA
1 AAAAATTCTCGTGTTTCTAAA
46809776 AAAAATT-TCGTGTTTCTAAA
1 AAAAATTCTCGTGTTTCTAAA
46809796 A
1 A
46809797 TTTTCGTGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
17 16 0.44
20 13 0.36
21 7 0.19
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (21 bp):
AAAAATTCTCGTGTTTCTAAA
Found at i:46809851 original size:54 final size:53
Alignment explanation
Indices: 46809715--46809860 Score: 142
Period size: 54 Copynumber: 2.7 Consensus size: 53
46809705 TGTCATGTTT
*
46809715 TTTTTAAAAAAAA-TT-GT-TTTTTGAAAAATTCTCGTGTTTCAAAAATTCTCGTG
1 TTTTTAAAAAAAATTTCGTGTTTCT--AAAATTCTCGTG-TTCAAAAATTCTCGTG
* * *
46809768 TTTTTAAAAAAAATTTCGTGTTTCTAAAATTTTCGTGTTCGAAGATT-TCGT-
1 TTTTTAAAAAAAATTTCGTGTTTCTAAAATTCTCGTGTTCAAAAATTCTCGTG
*
46809819 TTTTTAAAAAATATATATATTGTGTTTC-AAAATTCTCGTGTT
1 TTTTTAAAAAA-A-AT-T-TCGTGTTTCTAAAATTCTCGTGTT
46809861 TTCAAAACAA
Statistics
Matches: 80, Mismatches: 6, Indels: 13
0.81 0.06 0.13
Matches are distributed among these distances:
51 11 0.14
52 5 0.06
53 23 0.29
54 27 0.34
55 10 0.12
56 4 0.05
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.47
Consensus pattern (53 bp):
TTTTTAAAAAAAATTTCGTGTTTCTAAAATTCTCGTGTTCAAAAATTCTCGTG
Found at i:46816690 original size:158 final size:152
Alignment explanation
Indices: 46816228--46816735 Score: 534
Period size: 158 Copynumber: 3.3 Consensus size: 152
46816218 CTTTCTGTTT
* * * * **
46816228 TTTTTC-AAATATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGCCACGCTGAGGTATTTT
1 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCCAAGGTATTTT
* * * ** *
46816292 TAATTTCGGTCT-TTTTT-TAAAATCAACTCATAAT-ATAGAGGTGAGTTGAGCCTCGGGTCACG
66 TAATTTC--TCTGTTTTTCAAAAATAAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGGTCATG
* * *
46816354 CTGAAGTA-TTTTT--AATTTATG
129 CCGAGGTATTTTTTCAAATTTCTG
**** * * **
46816375 TCTTTTTTTTAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTT
1 T-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCCAAGGTATTT
* * *
46816439 TTAATTTCTTTTTTTTTTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCATG
65 TTAATTTC-TCTGTTTTTCAAAAATAAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGGTCATG
* *
46816504 CTGAGGTATTTTTTTAAATTTCTG
129 CCGAGGTATTTTTTCAAATTTCTG
* *
46816528 TTTTTCATAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGGTCACGCCAAGGT
1 TTTTTC-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCCAAGGT
* *
46816593 ATTTTTCAA-TTC-CTGTTTTTCAAAAATCAACTCATACTGCGAGGGGTGAGTTGAGCCTCGGGT
61 ATTTTT-AATTTCTCTGTTTTTCAAAAATAAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGGT
46816656 CGCATGCCGAGGTATTCTTTTCAAA-TTCTG
125 --CATGCCGAGGTATT-TTTTCAAATTTCTG
46816686 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
1 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
46816736 GAACGCCGAG
Statistics
Matches: 309, Mismatches: 34, Indels: 30
0.83 0.09 0.08
Matches are distributed among these distances:
147 3 0.01
148 53 0.17
149 30 0.10
150 32 0.10
151 5 0.02
152 4 0.01
153 50 0.16
156 46 0.15
157 15 0.05
158 62 0.20
159 9 0.03
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.36
Consensus pattern (152 bp):
TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCCAAGGTATTTT
TAATTTCTCTGTTTTTCAAAAATAAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGGTCATGCC
GAGGTATTTTTTCAAATTTCTG
Found at i:46816752 original size:79 final size:73
Alignment explanation
Indices: 46816228--46816735 Score: 507
Period size: 74 Copynumber: 6.7 Consensus size: 73
46816218 CTTTCTGTTT
* * *
46816228 TTTTTCAAATATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGCCACGCTGAGGTATTTTT
1 TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTT
* *
46816293 AATTTCGGTC
66 AAATTC--TG
** ** *
46816303 TTTTTTTAAAATCAACTCATAAT-ATAGAGGTGAGTTGAGCCTCGGGTCACGCTGAAGTATTTTT
1 TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTT
* *
46816367 AATTTATG
66 AAATTCTG
*** *
46816375 TCTTTTTTTTAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTT
1 --TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTT
* *
46816439 TTAATTTCTTTTT
64 TTAAATTC---TG
* * *
46816452 TTTTTCAAAAATAAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCATGCTGAGGTATTTTT
1 TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA--TTT
46816517 TTAAATTTCTG
64 TTAAA-TTCTG
* * * **
46816528 TTTTTCATAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGGTCACGCCAAGGT
1 TTTTTC------AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGT
*
46816593 ATTTTTCAATTCCTG
60 ATTTTTAAATT-CTG
* * * *
46816608 TTTTTCAAAAATCAACTCATACTGCGAGGGGTGAGTTGAGCCTCGGGTCGCATGCCGAGGTATTC
1 TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGT--CACGCTGAGGTA-T-
46816673 TTTTCAAATTCTG
62 TTTT-AAATTCTG
*
46816686 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
1 TTTTTC-AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTC
46816736 GAACGCCGAG
Statistics
Matches: 371, Mismatches: 39, Indels: 44
0.82 0.09 0.10
Matches are distributed among these distances:
72 1 0.00
74 145 0.39
75 39 0.11
76 50 0.13
77 3 0.01
78 20 0.05
79 49 0.13
80 16 0.04
82 48 0.13
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.36
Consensus pattern (73 bp):
TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTT
AAATTCTG
Found at i:46816988 original size:30 final size:30
Alignment explanation
Indices: 46816931--46817085 Score: 165
Period size: 30 Copynumber: 5.2 Consensus size: 30
46816921 AATTTTTTTT
*
46816931 CATTTTGACCCC-AAATCTTT-TCTAAAATTA
1 CATTTTAACCCCTAAA-CTTTCTC-AAAATTA
*
46816961 CCTTTTAACCCCTAAACTTTCTCAAAATTA
1 CATTTTAACCCCTAAACTTTCTCAAAATTA
* * *
46816991 CATTTTAACCCTTGAACTTT-TCTAAATTA
1 CATTTTAACCCCTAAACTTTCTCAAAATTA
*
46817020 CATTTTGACCCCTAAACTTTCTCAAAATTA
1 CATTTTAACCCCTAAACTTTCTCAAAATTA
* * * *
46817050 TATTTTGA-CCCTGACATTTTCTCAAAATTA
1 CATTTTAACCCCT-AAACTTTCTCAAAATTA
46817080 CATTTT
1 CATTTT
46817086 GGCCCCAGAA
Statistics
Matches: 107, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
29 29 0.27
30 73 0.68
31 5 0.05
ACGTcount: A:0.32, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
CATTTTAACCCCTAAACTTTCTCAAAATTA
Found at i:46817035 original size:59 final size:58
Alignment explanation
Indices: 46816947--46817091 Score: 202
Period size: 59 Copynumber: 2.4 Consensus size: 58
46816937 GACCCCAAAT
* *
46816947 CTTTTCTAAAATTACCTTTTAACCCCTAAACTTTCTCAAAATTACATTTTAACCCTTGAA
1 CTTTTCTAAAATTACATTTTGACCCCTAAACTTTCTCAAAATTACATTTTAACCC-TG-A
* *
46817007 CTTTTCT-AAATTACATTTTGACCCCTAAACTTTCTCAAAATTATATTTTGACCCTGA
1 CTTTTCTAAAATTACATTTTGACCCCTAAACTTTCTCAAAATTACATTTTAACCCTGA
*
46817064 CATTTTCTCAAAATTACATTTTGGCCCC
1 C-TTTTCT-AAAATTACATTTTGACCCC
46817092 AGAAATTTTA
Statistics
Matches: 77, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
57 2 0.03
58 8 0.10
59 43 0.56
60 24 0.31
ACGTcount: A:0.30, C:0.25, G:0.04, T:0.41
Consensus pattern (58 bp):
CTTTTCTAAAATTACATTTTGACCCCTAAACTTTCTCAAAATTACATTTTAACCCTGA
Found at i:46817601 original size:12 final size:12
Alignment explanation
Indices: 46817586--46817610 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
46817576 CTGATCGGGG
46817586 AGGAAGAAAGAA
1 AGGAAGAAAGAA
46817598 AGGAAGAAAGAA
1 AGGAAGAAAGAA
46817610 A
1 A
46817611 AAAGAAGNNN
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (12 bp):
AGGAAGAAAGAA
Found at i:46817925 original size:13 final size:13
Alignment explanation
Indices: 46817907--46817940 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
46817897 GCAAGAAAAA
*
46817907 AAGAAAAAAAGGG
1 AAGAAAAAAAGAG
46817920 AAGAAAAAAAGAG
1 AAGAAAAAAAGAG
46817933 AA-AAAAAA
1 AAGAAAAAA
46817941 GGTTCAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (13 bp):
AAGAAAAAAAGAG
Found at i:46818125 original size:17 final size:17
Alignment explanation
Indices: 46818087--46818129 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
46818077 GTATTTATAT
46818087 TTTTAATTTTAAATCTA
1 TTTTAATTTTAAATCTA
* * *
46818104 ATTTAATTTTAATTTTA
1 TTTTAATTTTAAATCTA
46818121 TTTT-ATTTT
1 TTTTAATTTT
46818130 GAATACTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTAATTTTAAATCTA
Found at i:46818261 original size:19 final size:19
Alignment explanation
Indices: 46818239--46818282 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
46818229 ACGCCCTTTT
*
46818239 AAAAATTGAAAATATTCAAA
1 AAAAATTCAAAAT-TTCAAA
*
46818259 AAAAATCTCATAATTTCAAA
1 AAAAAT-TCAAAATTTCAAA
46818279 AAAA
1 AAAA
46818283 TTTCTATCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.64, C:0.09, G:0.02, T:0.25
Consensus pattern (19 bp):
AAAAATTCAAAATTTCAAA
Found at i:46818321 original size:21 final size:21
Alignment explanation
Indices: 46818295--46818334 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
46818285 TCTATCTTTC
46818295 AAATTTTT-TCGTGTCTTCAGG
1 AAATTTTTCTCGTGT-TTCAGG
46818316 AAATTTTTCTCGTGTTTCA
1 AAATTTTTCTCGTGTTTCA
46818335 AAAAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.50
Consensus pattern (21 bp):
AAATTTTTCTCGTGTTTCAGG
Found at i:46818341 original size:22 final size:21
Alignment explanation
Indices: 46818295--46818339 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
46818285 TCTATCTTTC
**
46818295 AAATTTTTTCGTGTCTTCAGG
1 AAATTTTTTCGTGTCTTCAAA
46818316 AAATTTTTCTCGTGT-TTCAAA
1 AAATTTTT-TCGTGTCTTCAAA
46818337 AAA
1 AAA
46818340 ATATTCATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.44
Consensus pattern (21 bp):
AAATTTTTTCGTGTCTTCAAA
Found at i:46818551 original size:35 final size:34
Alignment explanation
Indices: 46818486--46818880 Score: 221
Period size: 35 Copynumber: 11.2 Consensus size: 34
46818476 AAAATTTTCC
*
46818486 CGTG-TTTCAAAAATTTTCGTGTTTTAAAAAATTCT
1 CGTGTTTTCAAAAA-TTTCGTG-TTTCAAAAATTCT
*
46818521 CGTGTTTTCAAAAATTTCAGTGTTTCAAAAATTCC
1 CGTGTTTTCAAAAATTTC-GTGTTTCAAAAATTCT
* * *
46818556 CATGTTTT-AAAAATTTATGTGTTTTCAAAAATTTT
1 CGTGTTTTCAAAAATTT-CGTG-TTTCAAAAATTCT
* * * *
46818591 CGTATTTTCAAAAAAAAATTT-GTGTTTTAAAAATCCA
1 CGTGTTTTC----AAAAATTTCGTGTTTCAAAAATTCT
* *
46818628 CGTGTTTTTAAAAATTTTGGTGTTTCAAAAA-TCTT
1 CGTGTTTTCAAAAA-TTTCGTGTTTCAAAAATTC-T
* * * *
46818663 CGTGTTTTCAAAAATTCCGGTGATTC-AAATTTTT
1 CGTGTTTTCAAAAATTTC-GTGTTTCAAAAATTCT
* *
46818697 CGTGTTTTCTAAAAATTTTTGTGCTTCAAAAAATT-T
1 CGTGTTTTC-AAAAA-TTTCGTGTTTC-AAAAATTCT
* ** *
46818733 CGT-TTTTCACAAATTTTCGTGTTTTCAATGACTCT
1 CGTGTTTTCA-AAAATTTCGTG-TTTCAAAAATTCT
* * * * ***
46818768 AGTG-TTTCACAAATTGTCACGTTTTTTTAAAAAAAAT
1 CGTGTTTTCAAAAATT-T--CG-TGTTTCAAAAATTCT
* * *
46818805 TGTGTTTTGAAAAATTCTCGTGTTTCAAAAATTGT
1 CGTGTTTTCAAAAATT-TCGTGTTTCAAAAATTCT
* * *
46818840 CGTGTTTTAAAAAAATTTCGTGTTTCTAAAATTTT
1 CGTGTTTT-CAAAAATTTCGTGTTTCAAAAATTCT
46818875 CGTGTT
1 CGTGTT
46818881 CGAAAATTTT
Statistics
Matches: 276, Mismatches: 56, Indels: 56
0.71 0.14 0.14
Matches are distributed among these distances:
33 5 0.02
34 45 0.16
35 144 0.52
36 27 0.10
37 33 0.12
38 14 0.05
40 8 0.03
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (34 bp):
CGTGTTTTCAAAAATTTCGTGTTTCAAAAATTCT
Found at i:46818654 original size:72 final size:73
Alignment explanation
Indices: 46818482--46818676 Score: 194
Period size: 72 Copynumber: 2.7 Consensus size: 73
46818472 TAAAAAAATT
* * * *
46818482 TTCCCGTGTTTCAAAAATTT-TCGTGTTTTAAAAAAT-TCTCGTGTTTTC----AAAAATTTCAG
1 TTCCCATGTTTTAAAAATTTAT-GTGTTTTCAAAAATCT-TCGTATTTTCAAAAAAAAATTT-AG
46818541 TGTTTCAAAAA
63 TGTTTCAAAAA
*
46818552 TTCCCATGTTTTAAAAATTTATGTGTTTTCAAAAATTTTCGTATTTTCAAAAAAAAATTT-GTGT
1 TTCCCATGTTTTAAAAATTTATGTGTTTTCAAAAATCTTCGTATTTTCAAAAAAAAATTTAGTGT
*
46818616 TTTAAAAA
66 TTCAAAAA
* *
46818624 -TCCACGTGTTTTTAAAAATTT-TG-GTGTTTCAAAAATCTTCGTGTTTTCAAAAA
1 TTCC-CATG-TTTTAAAAATTTATGTGT-TTTCAAAAATCTTCGTATTTTCAAAAA
46818677 TTCCGGTGAT
Statistics
Matches: 108, Mismatches: 8, Indels: 16
0.82 0.06 0.12
Matches are distributed among these distances:
70 40 0.37
71 7 0.06
72 41 0.38
73 12 0.11
74 8 0.07
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (73 bp):
TTCCCATGTTTTAAAAATTTATGTGTTTTCAAAAATCTTCGTATTTTCAAAAAAAAATTTAGTGT
TTCAAAAA
Found at i:46818759 original size:18 final size:18
Alignment explanation
Indices: 46818475--46818880 Score: 252
Period size: 17 Copynumber: 22.8 Consensus size: 18
46818465 GTTTGTGTAA
46818475 AAAAATTTTCCCGTG-TTTC
1 AAAAATTTT--CGTGTTTTC
*
46818494 AAAAATTTTCGTGTTTTA
1 AAAAATTTTCGTGTTTTC
*
46818512 AAAAATTCTCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
46818530 AAAAA-TTTCAGTG-TTTC
1 AAAAATTTTC-GTGTTTTC
** *
46818547 AAAAATTCCCATGTTTT-
1 AAAAATTTTCGTGTTTTC
46818564 AAAAATTTAT-GTGTTTTC
1 AAAAATTT-TCGTGTTTTC
*
46818582 AAAAATTTTCGTATTTTC
1 AAAAATTTTCGTGTTTTC
*
46818600 AAAAAAAAATTT-GTGTTTT-
1 ---AAAAATTTTCGTGTTTTC
*** *
46818619 AAAAATCCACGTGTTTTT
1 AAAAATTTTCGTGTTTTC
*
46818637 AAAAATTTTGGTG-TTTC
1 AAAAATTTTCGTGTTTTC
*
46818654 AAAAATCTTCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
* *
46818672 AAAAA-TTCCG-GTGATTC
1 AAAAATTTTCGTGT-TTTC
*
46818689 -AAATTTTTCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
* *
46818706 TAAAAATTTTTGTG-CTTC
1 -AAAAATTTTCGTGTTTTC
*
46818724 AAAAAATTTCGT-TTTTC
1 AAAAATTTTCGTGTTTTC
*
46818741 ACAAATTTTCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
** * * *
46818759 AATGACTCTAGTG-TTTC
1 AAAAATTTTCGTGTTTTC
* * * *
46818776 ACAAATTGTCACGTTTTTTTA
1 AAAAATT-T-TCG-TGTTTTC
** *
46818797 AAAAAAATT-GTGTTTTG
1 AAAAATTTTCGTGTTTTC
*
46818814 AAAAATTCTCGTG-TTTC
1 AAAAATTTTCGTGTTTTC
* *
46818831 AAAAATTGTCGTGTTTTA
1 AAAAATTTTCGTGTTTTC
*
46818849 AAAAAATTTCGTG-TTTC
1 AAAAATTTTCGTGTTTTC
*
46818866 TAAAATTTTCGTGTT
1 AAAAATTTTCGTGTT
46818881 CGAAAATTTT
Statistics
Matches: 290, Mismatches: 70, Indels: 55
0.70 0.17 0.13
Matches are distributed among these distances:
16 10 0.03
17 136 0.47
18 101 0.35
19 20 0.07
20 8 0.03
21 15 0.05
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (18 bp):
AAAAATTTTCGTGTTTTC
Found at i:46818810 original size:55 final size:53
Alignment explanation
Indices: 46818695--46818864 Score: 130
Period size: 55 Copynumber: 3.2 Consensus size: 53
46818685 ATTCAAATTT
* * * * * * **
46818695 TTCGTGTTTTCTAAAAATTTTTGTGCTTCAAAAAATT-TCGT-TTTTCACAAATT
1 TTCGTGTTTTC-AAAAACTCTAGTGTTTC-AAAAATTGTCGTGTTTTAAAAAAAA
** * *
46818748 TTCGTGTTTTCAATGACTCTAGTGTTTCACAAATTGTCACGTTTTTTTAAAAAAAA
1 TTCGTGTTTTCAAAAACTCTAGTGTTTCAAAAATTGT--CG-TGTTTTAAAAAAAA
* * * *
46818804 TT-GTGTTTTGAAAAATTCTCGTGTTTCAAAAATTGTCGTGTTTTAAAAAAAT
1 TTCGTGTTTTCAAAAACTCTAGTGTTTCAAAAATTGTCGTGTTTTAAAAAAAA
46818856 TTCGTGTTT
1 TTCGTGTTT
46818865 CTAAAATTTT
Statistics
Matches: 92, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
51 6 0.07
52 26 0.28
53 19 0.21
54 2 0.02
55 29 0.32
56 10 0.11
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (53 bp):
TTCGTGTTTTCAAAAACTCTAGTGTTTCAAAAATTGTCGTGTTTTAAAAAAAA
Found at i:46818886 original size:16 final size:17
Alignment explanation
Indices: 46818815--46818890 Score: 73
Period size: 17 Copynumber: 4.5 Consensus size: 17
46818805 TGTGTTTTGA
* *
46818815 AAAATTCTCGTGTTTCA
1 AAAATTTTCGTGTTTCG
* **
46818832 AAAATTGTCGTGTTTTAA
1 AAAATTTTCGTG-TTTCG
* *
46818850 AAAAATTTCGTGTTTCT
1 AAAATTTTCGTGTTTCG
46818867 AAAATTTTCGTG-TTCG
1 AAAATTTTCGTGTTTCG
46818883 AAAATTTT
1 AAAATTTT
46818891 GTTTTTAAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
16 11 0.22
17 25 0.50
18 14 0.28
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.45
Consensus pattern (17 bp):
AAAATTTTCGTGTTTCG
Found at i:46819693 original size:24 final size:26
Alignment explanation
Indices: 46819642--46819693 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
46819632 AGTTATGTCT
*
46819642 TCAAACACAAACATATATTTATATAC
1 TCAAACACAAACATATACTTATATAC
46819668 TCAAAC-C-AACATTATACTTATA-AC
1 TCAAACACAAACA-TATACTTATATAC
46819692 TC
1 TC
46819694 CATTTACAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 8 0.33
25 10 0.42
26 6 0.25
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (26 bp):
TCAAACACAAACATATACTTATATAC
Found at i:46821380 original size:15 final size:15
Alignment explanation
Indices: 46821360--46821397 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
46821350 CCTTTTTCTC
46821360 CTCTTTTCTTTCTTT
1 CTCTTTTCTTTCTTT
46821375 CTCTTTTCTTTCTTT
1 CTCTTTTCTTTCTTT
46821390 -TCTTTTCT
1 CTCTTTTCT
46821398 ATTTAATCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 8 0.35
15 15 0.65
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (15 bp):
CTCTTTTCTTTCTTT
Found at i:46821384 original size:5 final size:5
Alignment explanation
Indices: 46821361--46821397 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
46821351 CTTTTTCTCC
46821361 TCTTT TC-TT TCTTT CTCTTT TC-TT TCTTT TCTTT TCT
1 TCTTT TCTTT TCTTT -TCTTT TCTTT TCTTT TCTTT TCT
46821398 ATTTAATCTG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
4 8 0.28
5 16 0.55
6 5 0.17
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (5 bp):
TCTTT
Found at i:46822441 original size:43 final size:43
Alignment explanation
Indices: 46822380--46822472 Score: 134
Period size: 43 Copynumber: 2.2 Consensus size: 43
46822370 AGTATCAGGG
* * *
46822380 GACACATGGCCGTGTCACCTAG-CTGTGTGTCACACACGGCTGA
1 GACACACGGCCATGTCACCT-GCCCGTGTGTCACACACGGCTGA
*
46822423 GACACACGGCCATGTCACCTGCCCGTGTGTCACACACGGCTGG
1 GACACACGGCCATGTCACCTGCCCGTGTGTCACACACGGCTGA
46822466 GACACAC
1 GACACAC
46822473 ACCTGTGTCT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 1 0.02
43 44 0.98
ACGTcount: A:0.22, C:0.34, G:0.27, T:0.17
Consensus pattern (43 bp):
GACACACGGCCATGTCACCTGCCCGTGTGTCACACACGGCTGA
Found at i:46825001 original size:17 final size:17
Alignment explanation
Indices: 46824968--46825001 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
46824958 TATACATGCT
*
46824968 TAACAAAACTTTGAGGC
1 TAACAAAAATTTGAGGC
*
46824985 TAACAAAAATTTTAGGC
1 TAACAAAAATTTGAGGC
46825002 AAATATAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (17 bp):
TAACAAAAATTTGAGGC
Found at i:46830217 original size:21 final size:21
Alignment explanation
Indices: 46830175--46830217 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
46830165 AAGTATAAAG
* *
46830175 ATAATATATATATATTATAAA
1 ATAATATATATATATAAGAAA
46830196 ATAATATA-AGTATATAAGAAA
1 ATAATATATA-TATATAAGAAA
46830217 A
1 A
46830218 CAAGTGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (21 bp):
ATAATATATATATATAAGAAA
Found at i:46833239 original size:11 final size:11
Alignment explanation
Indices: 46833212--46833273 Score: 72
Period size: 11 Copynumber: 5.6 Consensus size: 11
46833202 AACTAATCCT
46833212 CTCTCAAATTTC
1 CTCTC-AATTTC
*
46833224 CTCTCAATTTT
1 CTCTCAATTTC
*
46833235 TTCTCAATTTC
1 CTCTCAATTTC
*
46833246 CTCTCAATTTG
1 CTCTCAATTTC
*
46833257 CTCTCAAATTC
1 CTCTCAATTTC
46833268 CT-TCAA
1 CTCTCAA
46833274 AATTTCTCTC
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
10 4 0.09
11 34 0.79
12 5 0.12
ACGTcount: A:0.23, C:0.31, G:0.02, T:0.45
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:46833282 original size:22 final size:22
Alignment explanation
Indices: 46833211--46833287 Score: 86
Period size: 22 Copynumber: 3.5 Consensus size: 22
46833201 CAACTAATCC
*
46833211 TCTCTCAAATTTCCTCTCAATTT
1 TCTCTCAAA-TTCCTCTCAAATT
* *
46833234 TTTCTCAATTTCCTCTC-AATT
1 TCTCTCAAATTCCTCTCAAATT
46833255 TGCTCTCAAATTCCT-TCAAAATT
1 T-CTCTCAAATTCCTCTC-AAATT
46833278 TCTCTCAAAT
1 TCTCTCAAAT
46833288 CCATATTTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
21 6 0.13
22 28 0.61
23 12 0.26
ACGTcount: A:0.25, C:0.29, G:0.01, T:0.45
Consensus pattern (22 bp):
TCTCTCAAATTCCTCTCAAATT
Found at i:46833287 original size:11 final size:11
Alignment explanation
Indices: 46833211--46833287 Score: 70
Period size: 11 Copynumber: 6.9 Consensus size: 11
46833201 CAACTAATCC
46833211 TCTCTCAAATT
1 TCTCTCAAATT
*
46833222 TCCTCTCAATTT
1 T-CTCTCAAATT
*
46833234 TTTCTC-AATT
1 TCTCTCAAATT
46833244 TCCTCTC-AATT
1 T-CTCTCAAATT
46833255 TGCTCTCAAATT
1 T-CTCTCAAATT
*
46833267 CCT-TCAAAATT
1 TCTCTC-AAATT
46833278 TCTCTCAAAT
1 TCTCTCAAAT
46833288 CCATATTTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
10 6 0.11
11 32 0.59
12 16 0.30
ACGTcount: A:0.25, C:0.29, G:0.01, T:0.45
Consensus pattern (11 bp):
TCTCTCAAATT
Found at i:46833311 original size:51 final size:51
Alignment explanation
Indices: 46833249--46833346 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 51
46833239 CAATTTCCTC
46833249 TCAATTTGCTCTCAAATTCCT-TCAAAATTTCTCTCAAATCCATATTTATTT
1 TCAATTTGCTCTCAAATTCCTCT-AAAATTTCTCTCAAATCCATATTTATTT
* * * * *
46833300 TCAATTTGCTCTCAAGTTCCTCTTATATTTCTCTTAAATCCCTATTT
1 TCAATTTGCTCTCAAATTCCTCTAAAATTTCTCTCAAATCCATATTT
46833347 TTAAATAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
51 40 0.98
52 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.03, T:0.47
Consensus pattern (51 bp):
TCAATTTGCTCTCAAATTCCTCTAAAATTTCTCTCAAATCCATATTTATTT
Found at i:46834501 original size:7 final size:7
Alignment explanation
Indices: 46834489--46834520 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
46834479 AGTCGATTGA
46834489 TATTTAG
1 TATTTAG
46834496 TATTTAG
1 TATTTAG
46834503 TATTTAG
1 TATTTAG
46834510 TATTTAG
1 TATTTAG
46834517 TATT
1 TATT
46834521 ATGTATATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.59
Consensus pattern (7 bp):
TATTTAG
Found at i:46835167 original size:18 final size:18
Alignment explanation
Indices: 46835140--46835179 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
46835130 CAGGTGCGTT
* *
46835140 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
46835158 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
46835176 TCCT
1 TCCT
46835180 TTTTCGAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:46835783 original size:22 final size:21
Alignment explanation
Indices: 46835752--46836416 Score: 530
Period size: 21 Copynumber: 31.0 Consensus size: 21
46835742 TAAAAACCCT
46835752 AACCCT-AACCCTTAACTTAA
1 AACCCTAAACCCTTAACTTAA
*
46835772 AACCACTAAACCCTTAACCTAAA
1 AACC-CTAAACCCTTAA-CTTAA
46835795 AACCCT-AACCCTTAACTTAA
1 AACCCTAAACCCTTAACTTAA
* *
46835815 AACCCCTAACCCCTTAACCTAAA
1 AA-CCCTAAACCCTTAA-CTTAA
*
46835838 AACCCTAAACCTTTAACTTTAA
1 AACCCTAAACCCTTAAC-TTAA
*
46835860 AA-CCTAAACCCTTAACCTAAA
1 AACCCTAAACCCTTAA-CTTAA
46835881 AACCCTAATCCTAAACCCTTAACCTTAA
1 AA--C----CCTAAACCCTTAA-CTTAA
**
46835909 AACCCT-AACGATTAACATTAA
1 AACCCTAAACCCTTAAC-TTAA
*
46835930 AACCCT-AACCACTTAACCTAAA
1 AACCCTAAACC-CTTAA-CTTAA
46835952 AACCCT-AACCCTTAACTTTAA
1 AACCCTAAACCCTTAAC-TTAA
*
46835973 AACCCTAAACCCTTAACCTAAAA
1 AACCCTAAACCCTTAA-CT-TAA
* ** *
46835996 AACTCTAAACTTTTAAATTAAA
1 AACCCTAAACCCTTAACTT-AA
* *
46836018 AACACT-AACCCTTAAATTAAA
1 AACCCTAAACCCTTAACTT-AA
***
46836039 AACCCTAAA-TAGTAACTTTAA
1 AACCCTAAACCCTTAAC-TTAA
* *
46836060 AACCCTTAACTCTTAACTTAAA
1 AACCCTAAACCCTTAACTT-AA
46836082 AACCCTAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTT-AA
* **
46836104 AACCCT-AACCCTAAACACAA
1 AACCCTAAACCCTTAACTTAA
*
46836124 AACCCT-AAGCC-T-A---AA
1 AACCCTAAACCCTTAACTTAA
*
46836139 AACCCT-AACCCTTAACCTAAA
1 AACCCTAAACCCTTAA-CTTAA
* *
46836160 AACCTTAAA-CCTTAAATTTAA
1 AACCCTAAACCCTT-AACTTAA
46836181 AACCCTAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTT-AA
*
46836203 AACCCT-AACCCTTAAATTAAA
1 AACCCTAAACCCTTAACTT-AA
*
46836224 AACCCTAAACCCTTAACCTAAA
1 AACCCTAAACCCTTAA-CTTAA
*
46836246 AACCCT-AACCCTTAACCTAAA
1 AACCCTAAACCCTTAA-CTTAA
*
46836267 AACCCT-AACCCTTAACCTAAA
1 AACCCTAAACCCTTAA-CTTAA
*
46836288 AACCCTAAACCCTTAACCTAAA
1 AACCCTAAACCCTTAA-CTTAA
*
46836310 AACCCT-AACCCTTAACCTGAA
1 AACCCTAAACCCTTAA-CTTAA
*
46836331 AAACCTAAA-CCTTAACTTTAA
1 AACCCTAAACCCTTAAC-TTAA
*
46836352 AACCCTAGACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTT-AA
46836374 AACCCTAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTT-AA
46836396 AACCCT-AACCCTTAACTTAA
1 AACCCTAAACCCTTAACTTAA
46836416 A
1 A
46836417 TATAATTTGA
Statistics
Matches: 546, Mismatches: 55, Indels: 88
0.79 0.08 0.13
Matches are distributed among these distances:
15 12 0.02
16 1 0.00
17 1 0.00
18 1 0.00
20 28 0.05
21 246 0.45
22 204 0.37
23 32 0.06
26 1 0.00
28 20 0.04
ACGTcount: A:0.45, C:0.32, G:0.01, T:0.23
Consensus pattern (21 bp):
AACCCTAAACCCTTAACTTAA
Found at i:46835805 original size:43 final size:42
Alignment explanation
Indices: 46835752--46836416 Score: 615
Period size: 43 Copynumber: 15.5 Consensus size: 42
46835742 TAAAAACCCT
*
46835752 AACCCTAACCCTTAACTTAAAACCACTAAACCCTTAACCTAAA
1 AACCCTAACCCTTAACTTAAAACC-CTAAACCCTTAACTTAAA
* *
46835795 AACCCTAACCCTTAACTTAAAACCCCTAACCCCTTAACCTAAA
1 AACCCTAACCCTTAACTTAAAA-CCCTAAACCCTTAACTTAAA
* *
46835838 AACCCTAAACCTTTAACTTTAAAA-CCTAAACCCTTAACCTAAA
1 AACCCT-AACCCTTAAC-TTAAAACCCTAAACCCTTAACTTAAA
**
46835881 AACCCTAATCCTAAACCCTTAACCTTAAAACCCT-AACGATTAACATT-AA
1 AA--C----CCT-AACCCTTAA-CTTAAAACCCTAAACCCTTAAC-TTAAA
* *
46835930 AACCCTAACCACTTAACCTAAAAACCCT-AACCCTTAACTTTAA
1 AACCCTAACC-CTTAA-CTTAAAACCCTAAACCCTTAACTTAAA
* * ** *
46835973 AACCCTAAACCCTTAACCTAAAAAACTCTAAACTTTTAAATTAAA
1 AACCCT-AACCCTTAA-CT-TAAAACCCTAAACCCTTAACTTAAA
* * *** *
46836018 AACACTAACCCTTAAATTAAAAACCCTAAA-TAGTAACTTTAA
1 AACCCTAACCCTTAACTT-AAAACCCTAAACCCTTAACTTAAA
*
46836060 AACCCTTAACTCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
1 AACCC-TAACCCTTAACTT-AAAACCCTAAACCCTTAACTTAAA
* ** *
46836104 AACCCTAACCCTAAACACAAAACCCT-AA-GC----C-TAAA
1 AACCCTAACCCTTAACTTAAAACCCTAAACCCTTAACTTAAA
* * * *
46836139 AACCCTAACCCTTAACCTAAAAACCTTAAA-CCTTAAATTTAA
1 AACCCTAACCCTTAA-CTTAAAACCCTAAACCCTTAACTTAAA
*
46836181 AACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAAATTAAA
1 AACCCT-AACCCTTAACTT-AAAACCCTAAACCCTTAACTTAAA
* *
46836224 AACCCTAAACCCTTAACCTAAAAACCCT-AACCCTTAACCTAAA
1 AACCCT-AACCCTTAA-CTTAAAACCCTAAACCCTTAACTTAAA
* *
46836267 AACCCTAACCCTTAACCTAAAAACCCTAAACCCTTAACCTAAA
1 AACCCTAACCCTTAA-CTTAAAACCCTAAACCCTTAACTTAAA
* * *
46836310 AACCCTAACCCTTAACCTGAAAAACCTAAA-CCTTAACTTTAA
1 AACCCTAACCCTTAA-CTTAAAACCCTAAACCCTTAACTTAAA
46836352 AACCCTAGACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
1 AACCCTA-ACCCTTAACTT-AAAACCCTAAACCCTTAACTTAAA
46836396 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
46836417 TATAATTTGA
Statistics
Matches: 532, Mismatches: 55, Indels: 71
0.81 0.08 0.11
Matches are distributed among these distances:
35 18 0.03
36 9 0.02
37 3 0.01
40 1 0.00
41 2 0.00
42 82 0.15
43 293 0.55
44 65 0.12
45 23 0.04
47 1 0.00
49 30 0.06
50 5 0.01
ACGTcount: A:0.45, C:0.32, G:0.01, T:0.23
Consensus pattern (42 bp):
AACCCTAACCCTTAACTTAAAACCCTAAACCCTTAACTTAAA
Found at i:46835843 original size:15 final size:14
Alignment explanation
Indices: 46835825--46835914 Score: 62
Period size: 15 Copynumber: 6.3 Consensus size: 14
46835815 AACCCCTAAC
46835825 CCCTTAACCTAAAAA
1 CCCTTAACCT-AAAA
* **
46835840 CCCTAAACCTTTAA
1 CCCTTAACCTAAAA
*
46835854 -CTTTAAAACCT-AAA
1 CCCTT-A-ACCTAAAA
46835868 CCCTTAACCTAAAAA
1 CCCTTAACCT-AAAA
46835883 CCC-TAATCCT-AAA
1 CCCTTAA-CCTAAAA
46835896 CCCTTAACCTTAAAA
1 CCCTTAACC-TAAAA
46835911 CCCT
1 CCCT
46835915 AACGATTAAC
Statistics
Matches: 59, Mismatches: 7, Indels: 18
0.70 0.08 0.21
Matches are distributed among these distances:
13 14 0.24
14 13 0.22
15 32 0.54
ACGTcount: A:0.41, C:0.34, G:0.00, T:0.24
Consensus pattern (14 bp):
CCCTTAACCTAAAA
Found at i:46835878 original size:13 final size:13
Alignment explanation
Indices: 46835860--46835905 Score: 58
Period size: 13 Copynumber: 3.4 Consensus size: 13
46835850 TTAACTTTAA
46835860 AACCTAAACCCTT
1 AACCTAAACCCTT
46835873 AACCTAAAAACCC-T
1 AACCT--AAACCCTT
46835887 AATCCTAAACCCTT
1 AA-CCTAAACCCTT
46835901 AACCT
1 AACCT
46835906 TAAAACCCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
13 14 0.48
14 6 0.21
15 9 0.31
ACGTcount: A:0.41, C:0.37, G:0.00, T:0.22
Consensus pattern (13 bp):
AACCTAAACCCTT
Found at i:46835893 original size:28 final size:28
Alignment explanation
Indices: 46835862--46835916 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
46835852 AACTTTAAAA
46835862 CCTAAACCCTTAACCTAAAAACCCTAAT
1 CCTAAACCCTTAACCTAAAAACCCTAAT
*
46835890 CCTAAACCCTTAACCTTAAAACCCTAA
1 CCTAAACCCTTAACCTAAAAACCCTAA
46835917 CGATTAACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.42, C:0.36, G:0.00, T:0.22
Consensus pattern (28 bp):
CCTAAACCCTTAACCTAAAAACCCTAAT
Found at i:46835962 original size:64 final size:64
Alignment explanation
Indices: 46835752--46836416 Score: 632
Period size: 64 Copynumber: 10.3 Consensus size: 64
46835742 TAAAAACCCT
* *
46835752 AACCCTAACCCTTAA-CTTAAAACCACTAAACCCTTAACCTAAAAACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACCTTAAAACC-CTAAACCCTTAACCTTAAAACCCTAACCCTTAACCTAAA
* * * *
46835816 ACCCCTAACCCCTTAACCTAAAAACCCTAAACCTTTAACTTTAAAA-CCTAAACCCTTAACCTAA
1 AACCCTAA-CCCTTAACCTTAAAACCCTAAACCCTTAACCTTAAAACCCT-AACCCTTAACCTAA
46835880 A
64 A
** *
46835881 AACCCTAATCCTAAACCCTTAACCTTAAAACCCT-AACGATTAACATTAAAACCCTAACCACTTA
1 AA--C----CCT-AACCCTTAACCTTAAAACCCTAAACCCTTAACCTTAAAACCCTAACC-CTTA
46835945 ACCTAAA
58 ACCTAAA
* * * ** **
46835952 AACCCTAACCCTTAACTTTAAAACCCTAAACCCTTAACCTAAAAAACTCTAAACTTTTAAATTAA
1 AACCCTAACCCTTAACCTTAAAACCCTAAACCCTTAACCT-TAAAACCCT-AACCCTTAACCTAA
46836017 A
64 A
* * *** * * *
46836018 AACACTAACCCTTAA-ATTAAAAACCCTAAA-TAGTAACTTTAAAACCCTTAACTCTTAACTTAA
1 AACCCTAACCCTTAACCTT-AAAACCCTAAACCCTTAACCTTAAAACCC-TAACCCTTAACCTAA
46836081 A
64 A
* *
46836082 AACCCTAAACCCTTAA-CTTAAAAACCCT-AACCCTAAACAC--AAAACCCT-A-----AGCCTA
1 AACCCT-AACCCTTAACCTT-AAAACCCTAAACCCTTAAC-CTTAAAACCCTAACCCTTAACCTA
46836137 AA
63 AA
* * ** *
46836139 AACCCTAACCCTTAACCTAAAAACCTTAAA-CCTTAAATTTAAAACCCTAAACCCTTAACTTAAA
1 AACCCTAACCCTTAACCTTAAAACCCTAAACCCTTAACCTTAAAACCCT-AACCCTTAACCTAAA
* *
46836203 AACCCTAACCCTTAA-ATTAAAAACCCTAAACCCTTAACCTAAAAACCCTAACCCTTAACCTAAA
1 AACCCTAACCCTTAACCTT-AAAACCCTAAACCCTTAACCTTAAAACCCTAACCCTTAACCTAAA
* *
46836267 AACCCTAACCCTTAACCTAAAAACCCTAAACCCTTAACCTAAAAACCCTAACCCTTAACCTGAAA
1 AACCCTAACCCTTAACCTTAAAACCCTAAACCCTTAACCTTAAAACCCTAACCCTTAACCT-AAA
* * * *
46836332 AA-CCTAAACCTTAACTTTAAAACCCTAGACCCTTAA-CTTAAAAACCCTAAACCCTTAACTTAA
1 AACCCTAACCCTTAACCTTAAAACCCTAAACCCTTAACCTT-AAAACCCT-AACCCTTAACCTAA
46836395 A
64 A
46836396 AACCCTAACCCTTAA-CTTAAA
1 AACCCTAACCCTTAACCTTAAA
46836417 TATAATTTGA
Statistics
Matches: 499, Mismatches: 64, Indels: 76
0.78 0.10 0.12
Matches are distributed among these distances:
56 21 0.04
57 24 0.05
59 1 0.00
62 1 0.00
63 4 0.01
64 213 0.43
65 125 0.25
66 48 0.10
67 4 0.01
69 1 0.00
70 18 0.04
71 37 0.07
72 2 0.00
ACGTcount: A:0.45, C:0.32, G:0.01, T:0.23
Consensus pattern (64 bp):
AACCCTAACCCTTAACCTTAAAACCCTAAACCCTTAACCTTAAAACCCTAACCCTTAACCTAAA
Found at i:46836127 original size:35 final size:36
Alignment explanation
Indices: 46836088--46836167 Score: 103
Period size: 35 Copynumber: 2.3 Consensus size: 36
46836078 TAAAAACCCT
*
46836088 AAACCCTTAA-CTTAAAAACCCTAACCCTAAACAC-A
1 AAACCCTTAAGCCTAAAAACCCTAACCCTAAAC-CTA
*
46836123 AAACCC-TAAGCCTAAAAACCCTAACCCTTAACCTA
1 AAACCCTTAAGCCTAAAAACCCTAACCCTAAACCTA
*
46836158 AAAACCTTAA
1 AAACCCTTAA
46836168 ACCTTAAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
34 4 0.10
35 32 0.82
36 3 0.08
ACGTcount: A:0.47, C:0.34, G:0.01, T:0.17
Consensus pattern (36 bp):
AAACCCTTAAGCCTAAAAACCCTAACCCTAAACCTA
Found at i:46839574 original size:126 final size:125
Alignment explanation
Indices: 46839331--46839892 Score: 736
Period size: 126 Copynumber: 4.5 Consensus size: 125
46839321 CATGTTACTA
* * * * *
46839331 TAGCAAAAGCGCTTCTACGTGGGCACGATTTCACAAATTCTTCTCATAAAGCATCCTGCTAGAAG
1 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTTGAAG
* * * *
46839396 CG-ATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCTAGGACCAACTG
66 CGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCAACTG
*
46839455 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATGCTGCTT-AC
1 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTGCTTGA-
* * * *
46839518 AGCGTTGTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGACCTACTG
64 AGCGTT-TTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCAACTG
* * * *
46839581 TAGCAAAAGCGCGTCCACGTGGGCCCGACTTCACAAATTCTTCTTATAAAGCATCCTGCTTGAAG
1 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTTGAAG
* * *
46839646 CTTTTTTTAAACTATTTGTTCAAAAACGTCAACTCGAAATTATTTCTTCCAGGACCAACTG
66 CGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAGGACCAACTG
* * * *
46839707 TAGTAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTTTTCTCACAAAGTATCCTGCTTGAAG
1 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTTGAAG
* * * *
46839772 CGTTTTTTAAACTATTTGCTAAGAAACGTCAAGTCGAAATTATTTTTCCAGGACCTATTG
66 CGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCAACTG
* * * * * *
46839832 TAGCAAAAGCGCGTACAC-ATGGGCGCGACTTCAAAAATCCTTCTGATAAATCATCCTGCTT
1 TAGCAAAAGCGCGTCCACGA-GGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTT
46839893 TGATTTTATC
Statistics
Matches: 381, Mismatches: 49, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
123 3 0.01
124 57 0.15
125 99 0.26
126 219 0.57
127 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (125 bp):
TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTTGAAG
CGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCAACTG
Found at i:46839803 original size:251 final size:250
Alignment explanation
Indices: 46839326--46839892 Score: 798
Period size: 251 Copynumber: 2.3 Consensus size: 250
46839316 CCAAACATGT
* * * *
46839326 TACTATAGCAAAAGCGCTTCTACGTGGGCACGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCACGACTTCACAAATTCTTCTCATAAAGCATCCTGCT
* * * * *
46839391 AGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCTAGGACCAACTGT
66 TGAAGCGATTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTCCAGGACCAACTGT
*
46839456 AGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATGCTGCTTACAGC
131 AGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTTACAGC
* * *
46839521 GTTGTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGACC
196 GTTGTTTTAAACTATTTGCTAAGAAACGTCAACTCAAAATTATTTTTCCAGGACC
* *
46839576 TACTGTAGCAAAAGCGCGTCCACGTGGGCCCGACTTCACAAATTCTTCTTATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCACGACTTCACAAATTCTTCTCATAAAGCATCCTGCT
** *
46839641 TGAAGCTTTTTTTAAACTATTTGTTCAAAAACGTCAACTCGAAATTATTTCTTCCAGGACCAACT
66 TGAAGC-GATTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTT-TTCCAGGACCAACT
* * *
46839706 GTAGTAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTTTTCTCACAA-AGTATCCTGCTTGA
129 GTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCTGCTT-A
* *
46839770 -AGCGTT-TTTTAAACTATTTGCTAAGAAACGTCAAGTCGAAATTATTTTTCCAGGACC
192 CAGCGTTGTTTTAAACTATTTGCTAAGAAACGTCAACTCAAAATTATTTTTCCAGGACC
* * * * * * * *
46839827 TATTGTAGCAAAAGCGCGTACACATGGGCGCGACTTCAAAAATCCTTCTGATAAATCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCACGACTTCACAAATTCTTCTCATAAAGCATCCTGCT
46839892 T
66 T
46839893 TGATTTTATC
Statistics
Matches: 282, Mismatches: 31, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
250 64 0.23
251 141 0.50
252 74 0.26
253 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.31
Consensus pattern (250 bp):
TACTGTAGCAAAAGCGCGTCCACGTGGGCACGACTTCACAAATTCTTCTCATAAAGCATCCTGCT
TGAAGCGATTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTCCAGGACCAACTGT
AGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTTACAGC
GTTGTTTTAAACTATTTGCTAAGAAACGTCAACTCAAAATTATTTTTCCAGGACC
Found at i:46841975 original size:17 final size:17
Alignment explanation
Indices: 46841955--46841987 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
46841945 ATTATATACT
46841955 TTATATTATAATATTTG
1 TTATATTATAATATTTG
46841972 TTATATTATAATATTT
1 TTATATTATAATATTT
46841988 AGTAACTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
TTATATTATAATATTTG
Found at i:46842183 original size:2 final size:2
Alignment explanation
Indices: 46842176--46842215 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
46842166 ACCCATTTTA
46842176 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46842216 TTCCCAAATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:46847299 original size:23 final size:22
Alignment explanation
Indices: 46847256--46847370 Score: 70
Period size: 19 Copynumber: 5.6 Consensus size: 22
46847246 AAAAGGTATC
* *
46847256 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
46847277 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* * *
46847300 TGCATATCATA---TCTATGAT
1 TACAAATCATATCTTCTAAGAT
*
46847319 TACATATCATA---TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
* *
46847338 TGCATATCATA---TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
*
46847357 TACATATCATATCT
1 TACAAATCATATCT
46847371 AAGATTGCAT
Statistics
Matches: 80, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
19 52 0.65
21 3 0.04
22 15 0.19
23 10 0.12
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.37
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:46847319 original size:19 final size:19
Alignment explanation
Indices: 46847292--46847383 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
46847282 AATCATATCT
46847292 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* *
46847311 TCTATGATTACATATCATA
1 TCTAAGATTGCATATCATA
46847330 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
46847349 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
46847368 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
46847384 CTTGAAGACT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:46847338 original size:38 final size:38
Alignment explanation
Indices: 46847269--46847383 Score: 176
Period size: 38 Copynumber: 2.9 Consensus size: 38
46847259 AAATTAAATC
*
46847269 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTAC-ATATCATA---TCTAAGATTGCATATCATA
*
46847311 TCTATGATTACATATCATATCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
46847349 TCTAAGATTACATATCATATCTAAGATTGCATATC
1 TCTAAGATTACATATCATATCTAAGATTGCATATC
46847384 CTTGAAGACT
Statistics
Matches: 70, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
38 53 0.76
41 7 0.10
42 10 0.14
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (38 bp):
TCTAAGATTACATATCATATCTAAGATTGCATATCATA
Found at i:46848413 original size:201 final size:202
Alignment explanation
Indices: 46847999--46850216 Score: 3625
Period size: 201 Copynumber: 11.0 Consensus size: 202
46847989 CATCTTCAGT
*
46847999 TTTTTAAATTGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACC
1 TTTTT-AATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACC
** * * * *
46848064 GCCAGGGAAGTAAAATTCGTCGTTTGCGGCTTCAATATTTTTAATTACAATGTT-AGG-AACGAG
65 GCCAGGGAAGTAAAATTCACCGTTTGCGGCTTCAATCTTTTTAATTGCACTGTTGGGGAAACGA-
*
46848127 GATTCATCATCGTAGCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAAATTCACCGT
129 GATTC-GC--CGT--CGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAAATTCACCGT
46848192 TTGCGGCTTCAATC
189 TTGCGGCTTCAATC
* * * **
46848206 TTTTTAATTGCAATGTTGAGGAAACGGGATTCGTCGTCGTAGCTTCAATCTGTTCCACGGCACCG
1 TTTTTAATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCG
*
46848271 CCAGGGAAGTAAAATTCACCG-TTGCGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGA
66 CCAGGGAAGTAAAATTCACCGTTTGCGGCTTCAATCTTTTTAATTGCACTGTTGGGGAAACGAGA
* * *
46848335 TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACTGCCAGGGAAGTAAAATTCACCGTTTCCGAC
131 TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAAATTCACCGTTTGCGGC
46848400 TTCAATC
196 TTCAATC
* * *
46848407 TTTTTAATTGCAATGTTAGGGAAACGAGATTCGTCGTCGTAGCTTCAATCTATTCCACTACACCG
1 TTTTTAATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCG
* *
46848472 TCAGGGAAGTAAAATTCACCGTTTGTGGCTTCAATCTTTTTAATTGCACTGTTGGGGAAACGAGA
66 CCAGGGAAGTAAAATTCACCGTTTGCGGCTTCAATCTTTTTAATTGCACTGTTGGGGAAACGAGA
* *
46848537 CTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCACCAGGGAAGTAAAATTCACCG-TTGCGGC
131 TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAAATTCACCGTTTGCGGC
46848601 TTCAATC
196 TTCAATC
*
46848608 TTTTTAATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTATTCCACTACACCG
1 TTTTTAATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCG
*
46848673 CCAGGGAAGTAAAATTCACCGTTTCCGGCTTCAATCTTTTTAATTGCACTGTTGGGGAAACGAGA
66 CCAGGGAAGTAAAATTCACCGTTTGCGGCTTCAATCTTTTTAATTGCACTGTTGGGGAAACGAGA
46848738 TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAAATTCACCG-TTGCGGC
131 TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAAATTCACCGTTTGCGGC
46848802 TTCAATC
196 TTCAATC
* * * **
46848809 TTTTTAATTGCAATGTTGAGGAAACGGGATTCGTCGTCGTAGCTTCAATCTGTTCCACGGCACCG
1 TTTTTAATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCG
*
46848874 CCAGGGAAGTAAAATTCACCG-TTGCGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGA
66 CCAGGGAAGTAAAATTCACCGTTTGCGGCTTCAATCTTTTTAATTGCACTGTTGGGGAAACGAGA
* * *
46848938 TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACTGCCAGGGAAGTAAAATTCACCGTTTCCGAC
131 TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAAATTCACCGTTTGCGGC
46849003 TTCAATC
196 TTCAATC
* * *
46849010 TTTTTAATTGCAATGTTAGGGAAACGAGATTCGTCGTCGTAGCTTCAATCTATTCCACTACACCG
1 TTTTTAATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCG
* *
46849075 TCAGGGAAGTAAAATTCACCGTTTGTGGCTTCAATCTTTTTAATTGCACTGTTGGGGAAACGAGA
66 CCAGGGAAGTAAAATTCACCGTTTGCGGCTTCAATCTTTTTAATTGCACTGTTGGGGAAACGAGA
* *
46849140 CTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCACCAGGGAAGTAAAATTCACCG-TTGCGGC
131 TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAAATTCACCGTTTGCGGC
46849204 TTCAATC
196 TTCAATC
*
46849211 TTTTTAATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTATTCCACTACACCG
1 TTTTTAATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCG
* *
46849276 CCAGGGAAGTAAAATCCACTGTTTGCGGCTTCAATCTTTTTAATTGCACTGTTGGGGAAACGAGA
66 CCAGGGAAGTAAAATTCACCGTTTGCGGCTTCAATCTTTTTAATTGCACTGTTGGGGAAACGAGA
46849341 TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAAATTCACCG-TTGCGGC
131 TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAAATTCACCGTTTGCGGC
46849405 TTCAATC
196 TTCAATC
* * *
46849412 TTTTTAATTGCAATGTTGGGGAAACAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTACACCG
1 TTTTTAATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCG
*
46849477 CCAGGGAAGTAAAATTCACCGTTTGGGGCTTCAATCTTTTTAATTGCACTGTTGGGGAAACGAGA
66 CCAGGGAAGTAAAATTCACCGTTTGCGGCTTCAATCTTTTTAATTGCACTGTTGGGGAAACGAGA
*
46849542 TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACTGCCAGGGAAGTAAAATTCACCGTTTGCGGC
131 TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAAATTCACCGTTTGCGGC
46849607 TTCAATC
196 TTCAATC
* * * *
46849614 TTTTTAATTGCAATGTTGGGGAAACGGGATTCGTCGTCGTAGCGTCAATCTGTTCCACTGCACCG
1 TTTTTAATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCG
* *
46849679 CCAGGGAAGTAAAATTCACCG-TTGTGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGA
66 CCAGGGAAGTAAAATTCACCGTTTGCGGCTTCAATCTTTTTAATTGCACTGTTGGGGAAACGAGA
* * *
46849743 TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACTGGCAGGGAAGTAAAATTCACCG-TTACGGC
131 TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAAATTCACCGTTTGCGGC
46849807 TTCAATC
196 TTCAATC
*
46849814 TTTTTAATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTATTCCACTACACCG
1 TTTTTAATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCG
*
46849879 CCAGGGAAGTAAAATTCACCGTTTGCGGCTTCAATCTTTTTATTTGCACTGTTGGGGAAACGAGA
66 CCAGGGAAGTAAAATTCACCGTTTGCGGCTTCAATCTTTTTAATTGCACTGTTGGGGAAACGAGA
*
46849944 TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACTGCCAGGGAAGTAAAATTCACCGTTTGCGGC
131 TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAAATTCACCGTTTGCGGC
46850009 TTCAATC
196 TTCAATC
* *
46850016 TTTTTAATTACAATGTTGGGGAAACGAGATTCGCCCTCGTAGCTTCAATCTGTTCCACTACACCG
1 TTTTTAATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCG
* * * * *
46850081 CCAGGGAAGTAAAATTCGCCG-TTGCGGCTTCAATATTTTTAATTACAATGTTGGGGAAACTAGA
66 CCAGGGAAGTAAAATTCACCGTTTGCGGCTTCAATCTTTTTAATTGCACTGTTGGGGAAACGAGA
* *
46850145 TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCACCAAGGG-AGTAAGATTCACCG-TTGCGG
131 TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCC-AGGGAAGTAAAATTCACCGTTTGCGG
*
46850208 CTTTAATC
195 CTTCAATC
46850216 T
1 T
46850217 ACTCCACTGT
Statistics
Matches: 1891, Mismatches: 111, Indels: 25
0.93 0.05 0.01
Matches are distributed among these distances:
200 205 0.11
201 1181 0.62
202 382 0.20
203 3 0.00
205 30 0.02
206 80 0.04
207 10 0.01
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.30
Consensus pattern (202 bp):
TTTTTAATTGCAATGTTGGGGAAACGAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCG
CCAGGGAAGTAAAATTCACCGTTTGCGGCTTCAATCTTTTTAATTGCACTGTTGGGGAAACGAGA
TTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAAATTCACCGTTTGCGGC
TTCAATC
Found at i:46850421 original size:167 final size:166
Alignment explanation
Indices: 46850142--46850534 Score: 455
Period size: 167 Copynumber: 2.3 Consensus size: 166
46850132 TGGGGAAACT
* * * * ** *
46850142 AGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCACCAAGGGAGTAAGATTCACCGTTGCG
1 AGATTCGCCGTCAT-GCTTCAATCTGCTCCGCTACAACGTCAAGGAAGTAAGATTCACCGTTGCG
* * *
46850207 GCTTTAATCTACTCCACTGTAATGCCAAAGAGATAGGATTCGCTGCCCACAGCTTCAATCCGCTC
65 GCTTCAATCTACTCCACTGTAATGCCAAAGAGATAGGATTCGCTGCCCACAGATTCAATCCACTC
* *
46850272 CACTTTAGCTAATCCAAGCCTTAACGCCAGGGAGATA
130 CACCTCAGCTAATCCAAGCCTTAACGCCAGGGAGATA
* * **
46850309 AGATTCGCCGTCATGGCTTCAATCTGCTCCGCTACAACGTCATGGAAGTAAGATTCGCCGTTTTG
1 AGATTCGCCGTCAT-GCTTCAATCTGCTCCGCTACAACGTCAAGGAAGTAAGATTCACCGTTGCG
* * * * *
46850374 GCTTCAATCTATTTCATTGTAATGCCAAAGAGATAGGATTTGCTGCCCACAGATTTAATCCACTC
65 GCTTCAATCTACTCCACTGTAATGCCAAAGAGATAGGATTCGCTGCCCACAGATTCAATCCACTC
* * * *
46850439 CACCTCAGCTATTTCAAGTCTTAACGCTAGGGAGATA
130 CACCTCAGCTAATCCAAGCCTTAACGCCAGGGAGATA
* * * * * *
46850476 AGATTCGATGCCTTCA-GCTTTAATCTACTCCGCTATAACGTCAGGGAAGTAAAATTCAC
1 AGATTC---GCCGTCATGCTTCAATCTGCTCCGCTACAACGTCAAGGAAGTAAGATTCAC
46850535 AATCTTCAAC
Statistics
Matches: 190, Mismatches: 33, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
167 147 0.77
168 37 0.19
170 6 0.03
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (166 bp):
AGATTCGCCGTCATGCTTCAATCTGCTCCGCTACAACGTCAAGGAAGTAAGATTCACCGTTGCGG
CTTCAATCTACTCCACTGTAATGCCAAAGAGATAGGATTCGCTGCCCACAGATTCAATCCACTCC
ACCTCAGCTAATCCAAGCCTTAACGCCAGGGAGATA
Found at i:46850580 original size:44 final size:44
Alignment explanation
Indices: 46850531--46850741 Score: 226
Period size: 44 Copynumber: 5.0 Consensus size: 44
46850521 GAAGTAAAAT
*
46850531 TCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGGAC
1 TCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAC
*
46850575 TCACAATCTTCAACCTATTCCTCTGCTGACCAGGGAGATAGG--
1 TCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAC
* * *
46850617 -----A--TTC-ACCTATTCCACTGCTGACCAGGAAGATATGAT
1 TCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAC
* * * * *
46850653 TTATAATTTTCAACCTATTCCACTACTGACTAGGGAGATAGGAC
1 TCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAC
* * * *
46850697 TTACAATTTTCAACATATTCCACTGCTGACCAGGGAGATAAGAC
1 TCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAC
46850741 T
1 T
46850742 GGGGTCATTG
Statistics
Matches: 142, Mismatches: 15, Indels: 20
0.80 0.08 0.11
Matches are distributed among these distances:
34 27 0.19
35 3 0.02
37 1 0.01
41 1 0.01
43 3 0.02
44 107 0.75
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (44 bp):
TCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAC
Found at i:46850635 original size:34 final size:34
Alignment explanation
Indices: 46850587--46850653 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
46850577 ACAATCTTCA
* *
46850587 ACCTATTCCTCTGCTGACCAGGGAGATAGGATTC
1 ACCTATTCCACTGCTGACCAGGAAGATAGGATTC
*
46850621 ACCTATTCCACTGCTGACCAGGAAGATATGATT
1 ACCTATTCCACTGCTGACCAGGAAGATAGGATT
46850654 TATAATTTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (34 bp):
ACCTATTCCACTGCTGACCAGGAAGATAGGATTC
Found at i:46850672 original size:78 final size:78
Alignment explanation
Indices: 46850543--46850695 Score: 216
Period size: 78 Copynumber: 2.0 Consensus size: 78
46850533 ACAATCTTCA
* * *
46850543 ACCTATTCCACTGCTAACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCTCTGCTGACCAG
1 ACCTATTCCACTGCTAACCAGGAAGATAGGACTCACAATCTTCAACCTATTCCACTACTGACCAG
46850608 GGAGATAGGATTC
66 GGAGATAGGATTC
* * * * * * *
46850621 ACCTATTCCACTGCTGACCAGGAAGATATGATTTATAATTTTCAACCTATTCCACTACTGACTAG
1 ACCTATTCCACTGCTAACCAGGAAGATAGGACTCACAATCTTCAACCTATTCCACTACTGACCAG
46850686 GGAGATAGGA
66 GGAGATAGGA
46850696 CTTACAATTT
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
78 65 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (78 bp):
ACCTATTCCACTGCTAACCAGGAAGATAGGACTCACAATCTTCAACCTATTCCACTACTGACCAG
GGAGATAGGATTC
Found at i:46852141 original size:16 final size:16
Alignment explanation
Indices: 46852108--46852140 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
46852098 TTTCCTCTCC
46852108 TTCTTTCTTTTTCTTT
1 TTCTTTCTTTTTCTTT
46852124 TTCTTT-TTTTTCTTT
1 TTCTTTCTTTTTCTTT
46852139 TT
1 TT
46852141 TTCCCCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (16 bp):
TTCTTTCTTTTTCTTT
Found at i:46857063 original size:2 final size:2
Alignment explanation
Indices: 46857056--46857082 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
46857046 GACATGTGCG
46857056 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
46857083 TCATTAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:46857382 original size:19 final size:19
Alignment explanation
Indices: 46857358--46857410 Score: 97
Period size: 19 Copynumber: 2.8 Consensus size: 19
46857348 AATCATATCT
46857358 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
46857377 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
46857396 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
46857411 TCTTGAAGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:46857649 original size:22 final size:22
Alignment explanation
Indices: 46857621--46857664 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
46857611 TTTGATGTTA
46857621 AACTTGTAAATTTAAAATTCAG
1 AACTTGTAAATTTAAAATTCAG
*
46857643 AACTTGTAAATTTGAAATTCAG
1 AACTTGTAAATTTAAAATTCAG
46857665 GATAATGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.36
Consensus pattern (22 bp):
AACTTGTAAATTTAAAATTCAG
Found at i:46859635 original size:38 final size:39
Alignment explanation
Indices: 46859587--46859662 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 39
46859577 CCTAGGCCAA
*
46859587 GGCCAAGGTCGTGTGATCCACACGGCTAAGGCCATTTTG
1 GGCCAAGGTCGTGTGATCCACACGGCCAAGGCCATTTTG
46859626 GGCC-AGGTCGTGTGATCCACACGGCCAAGGCCATTTT
1 GGCCAAGGTCGTGTGATCCACACGGCCAAGGCCATTTT
46859663 AGGGTGTGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 32 0.89
39 4 0.11
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (39 bp):
GGCCAAGGTCGTGTGATCCACACGGCCAAGGCCATTTTG
Found at i:46866133 original size:25 final size:24
Alignment explanation
Indices: 46866102--46866158 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
46866092 GCTGTAAACG
46866102 GTAAGCTCTT-CAGAGCTGAATAACA
1 GTAAGCTCTTGCA-AGCTGAATAA-A
* *
46866127 GTAAGCTTTTGCAAGCTGAATAAT
1 GTAAGCTCTTGCAAGCTGAATAAA
46866151 GTAAGCTC
1 GTAAGCTC
46866159 ATACGAGCTG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 7 0.25
25 19 0.68
26 2 0.07
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (24 bp):
GTAAGCTCTTGCAAGCTGAATAAA
Found at i:46866167 original size:24 final size:24
Alignment explanation
Indices: 46866076--46866195 Score: 66
Period size: 25 Copynumber: 4.9 Consensus size: 24
46866066 GTTCATGTAC
*
46866076 ATGTATGCTCATACGAGCTGTAA-A
1 ATGTAAGCTCATACGAGCTG-AATA
** *
46866100 CGGTAAGCTC-TTCAGAGCTGAATA
1 ATGTAAGCTCATAC-GAGCTGAATA
* ** * *
46866124 ACAGTAAGCTTTTGCAAGCTGAATA
1 A-TGTAAGCTCATACGAGCTGAATA
*
46866149 ATGTAAGCTCATACGAGCTGAGT-
1 ATGTAAGCTCATACGAGCTGAATA
* *
46866172 ATCGGTAAGCTCATAAGAGTTGAA
1 AT--GTAAGCTCATACGAGCTGAA
46866196 ATTGGTAACC
Statistics
Matches: 72, Mismatches: 18, Indels: 11
0.71 0.18 0.11
Matches are distributed among these distances:
23 6 0.08
24 30 0.42
25 34 0.47
26 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (24 bp):
ATGTAAGCTCATACGAGCTGAATA
Found at i:46875195 original size:12 final size:14
Alignment explanation
Indices: 46875166--46875197 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
46875156 CAAACAAAAG
46875166 AAAAATTACAATTT
1 AAAAATTACAATTT
46875180 AAAAATTA-AA-TT
1 AAAAATTACAATTT
46875192 AAAAAT
1 AAAAAT
46875198 AAAAATATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.44
13 2 0.11
14 8 0.44
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (14 bp):
AAAAATTACAATTT
Found at i:46875202 original size:6 final size:6
Alignment explanation
Indices: 46875179--46875225 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
46875169 AATTACAATT
* *
46875179 TAAAAA TTAAAT TAAAAA TAAAAA TATTAAAA TAAAAA TAAAAA TAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TA--AAAA TAAAAA TAAAAA TAA
46875226 CTAAATTAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
6 29 0.83
8 6 0.17
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (6 bp):
TAAAAA
Found at i:46875209 original size:20 final size:20
Alignment explanation
Indices: 46875180--46875234 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
46875170 ATTACAATTT
46875180 AAAA-ATTAAATTAAAAATA
1 AAAATATTAAATTAAAAATA
*
46875199 AAAATATTAAAATAAAAATA
1 AAAATATTAAATTAAAAATA
*
46875219 AAAATAACTAAATTAA
1 AAAAT-ATTAAATTAA
46875235 TAGAAATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 4 0.13
20 19 0.61
21 8 0.26
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (20 bp):
AAAATATTAAATTAAAAATA
Found at i:46876088 original size:51 final size:51
Alignment explanation
Indices: 46876015--46876116 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
46876005 AACCGAAAGA
*
46876015 AATAAAGAAACTCGTGATAACTTTCTAAGAATTCAATTGGAAATCTTCAAT
1 AATAAAGAAACTCATGATAACTTTCTAAGAATTCAATTGGAAATCTTCAAT
46876066 AATAAAGAAACTCATGATAACTTTCTAAGAATTCAATTGGAAATCTTCAAT
1 AATAAAGAAACTCATGATAACTTTCTAAGAATTCAATTGGAAATCTTCAAT
46876117 CTTGACGGAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.31
Consensus pattern (51 bp):
AATAAAGAAACTCATGATAACTTTCTAAGAATTCAATTGGAAATCTTCAAT
Found at i:46878205 original size:22 final size:22
Alignment explanation
Indices: 46878147--46878205 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 22
46878137 AATTTTGTTG
* * *
46878147 CCATTTTGATGTTGTTTTGTTA
1 CCATTTTGATGTTATATTGCTA
***
46878169 CCATTTTGCCATTATATTGCTA
1 CCATTTTGATGTTATATTGCTA
*
46878191 CCATTTTGTTGTTAT
1 CCATTTTGATGTTAT
46878206 TATTTGGATA
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.17, C:0.15, G:0.14, T:0.54
Consensus pattern (22 bp):
CCATTTTGATGTTATATTGCTA
Found at i:46878249 original size:17 final size:20
Alignment explanation
Indices: 46878214--46878254 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
46878204 ATTATTTGGA
46878214 TATTATATAATTCTTGTTT-
1 TATTATATAATTCTTGTTTC
46878233 TATTAT-TAATT-TTGTTTC
1 TATTATATAATTCTTGTTTC
46878251 TATT
1 TATT
46878255 TTAGAGATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.29
18 9 0.43
19 6 0.29
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.66
Consensus pattern (20 bp):
TATTATATAATTCTTGTTTC
Found at i:46878787 original size:3 final size:3
Alignment explanation
Indices: 46878779--46878818 Score: 62
Period size: 3 Copynumber: 12.7 Consensus size: 3
46878769 GGGAATGTAA
46878779 AAT AAT AAT AAT AAT AAT AAT AAT AAT AGAT AAT AGAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT A-AT AA
46878819 GTAAATACAA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
3 29 0.83
4 6 0.17
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:46880314 original size:16 final size:16
Alignment explanation
Indices: 46880284--46880317 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
46880274 TAATGTTACT
**
46880284 AATTTTTAATTTTTAA
1 AATTTTTAAAATTTAA
46880300 AATTTTTAAAATTTAA
1 AATTTTTAAAATTTAA
46880316 AA
1 AA
46880318 AATTAATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AATTTTTAAAATTTAA
Found at i:46881681 original size:24 final size:24
Alignment explanation
Indices: 46881654--46881699 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
46881644 CTTGAAACCA
* *
46881654 TTTCCGCAGCTTCTCTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
46881678 TTTCCACAGCTCCTCTCTTCAC
1 TTTCCACAGCTCCTCTCTTCAC
46881700 TCTCTTCACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.11, C:0.46, G:0.07, T:0.37
Consensus pattern (24 bp):
TTTCCACAGCTCCTCTCTTCACCC
Found at i:46881741 original size:14 final size:14
Alignment explanation
Indices: 46881722--46881751 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
46881712 ACCGATTGCA
46881722 GCCTCATCATCTCT
1 GCCTCATCATCTCT
*
46881736 GCCTCATCTTCTCT
1 GCCTCATCATCTCT
46881750 GC
1 GC
46881752 TAGTTCACCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.43, G:0.10, T:0.37
Consensus pattern (14 bp):
GCCTCATCATCTCT
Found at i:46882948 original size:14 final size:15
Alignment explanation
Indices: 46882926--46883002 Score: 61
Period size: 14 Copynumber: 5.0 Consensus size: 15
46882916 CAATCAAACA
46882926 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
46882940 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
46882955 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
46882975 CCA-AAAATCATTTT
1 CCAGAAAATCATTTT
*
46882989 ACAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
46883003 ACTGGCAATC
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
14 21 0.41
15 16 0.31
16 1 0.02
18 1 0.02
19 4 0.08
20 8 0.16
ACGTcount: A:0.45, C:0.14, G:0.06, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:46882986 original size:34 final size:35
Alignment explanation
Indices: 46882930--46882996 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
46882920 CAAACACCAG
* *
46882930 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGAAAATCATTTTACAGAAAAGT
46882965 AAAACATTTTCCA-AAAATCATTTTACAGAAAA
1 AAAACATTTTCCAGAAAATCATTTTACAGAAAA
46882997 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 18 0.60
35 12 0.40
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGAAAATCATTTTACAGAAAAGT
Found at i:46883385 original size:24 final size:24
Alignment explanation
Indices: 46883340--46883385 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
46883330 ACAAAAGTTA
*
46883340 AATACATAAATACATTAGATTAAC
1 AATACATAAATACATTAAATTAAC
*
46883364 AATAC-TAAATGCATTACAATTA
1 AATACATAAATACATTA-AATTA
46883386 TTTATCATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.52, C:0.13, G:0.04, T:0.30
Consensus pattern (24 bp):
AATACATAAATACATTAAATTAAC
Found at i:46892088 original size:20 final size:20
Alignment explanation
Indices: 46892065--46892111 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
46892055 AACTATTCAA
** *
46892065 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
46892085 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
46892105 AT-ATATT
1 ATAATATT
46892112 TTTTAAAGGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:46893185 original size:30 final size:30
Alignment explanation
Indices: 46893144--46893202 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
46893134 TTCGAGCTTT
46893144 GGGGCAAAAGTGTAAATATGCAAAAGTTTA
1 GGGGCAAAAGTGTAAATATGCAAAAGTTTA
* *
46893174 GGGGTAAAAGTGTAAATGTGCAAAAGTTT
1 GGGGCAAAAGTGTAAATATGCAAAAGTTT
46893203 GAGTCAAGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.05, G:0.29, T:0.25
Consensus pattern (30 bp):
GGGGCAAAAGTGTAAATATGCAAAAGTTTA
Found at i:46893890 original size:50 final size:50
Alignment explanation
Indices: 46893666--46893998 Score: 364
Period size: 50 Copynumber: 6.6 Consensus size: 50
46893656 TATCGATGAA
* * * * *
46893666 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATA-ATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAA-ACTTGAT
* * * * * * * *
46893717 CACATGTGTAGTACTAAGTGAATGCTACAATGTGTACCG-AGAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AAAC-TTGAT
* * * *** *
46893768 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGAT
* *
46893819 CACGTGTGTAGTACTAAGTGAAGGCTACTACGTGAACCGTAAAACTAGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
* *
46893869 CACGTATGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTTAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
* * *
46893919 CATGTGTGAAGTACTATGTGAAGACTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
46893969 CACGTGTGTAGTACTATGTGAAGGCTACTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTA
46893999 TGTGTATCGA
Statistics
Matches: 235, Mismatches: 42, Indels: 11
0.82 0.15 0.04
Matches are distributed among these distances:
49 1 0.00
50 126 0.54
51 105 0.45
52 2 0.01
53 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
Found at i:46893957 original size:100 final size:101
Alignment explanation
Indices: 46893666--46893998 Score: 368
Period size: 102 Copynumber: 3.3 Consensus size: 101
46893656 TATCGATGAA
* * * * * *
46893666 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATA-ATGGTCACATGTGTAGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAA-ACATGATCACGTGTGAAGTA
* * * * * *
46893730 CTAAGTGAATG-CTACAATGTGTACCG-AGAAGCTTTGGT
65 CTAAGTGAA-GACTACTACGTGAACCGTA-AAAC-TAGAT
* * * ** * *
46893768 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACGTGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAAACATGATCACGTGTGAAGTAC
*
46893833 TAAGTGAAGGCTACTACGTGAACCGTAAAACTAGAT
66 TAAGTGAAGACTACTACGTGAACCGTAAAACTAGAT
* * * *
46893869 CACGTATGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTTATCATGTGTGAAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAAACATGATCACGTGTGAAGTAC
* *
46893933 TATGTGAAGACTACTACGTGAACCGTAAAACTTGAT
66 TAAGTGAAGACTACTACGTGAACCGTAAAACTAGAT
46893969 CACGTGTGTAGTACTATGTGAAGGCTACTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTA
46893999 TGTGTATCGA
Statistics
Matches: 203, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
100 80 0.39
101 39 0.19
102 83 0.41
103 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAAACATGATCACGTGTGAAGTAC
TAAGTGAAGACTACTACGTGAACCGTAAAACTAGAT
Found at i:46897095 original size:20 final size:21
Alignment explanation
Indices: 46897072--46897137 Score: 62
Period size: 24 Copynumber: 3.0 Consensus size: 21
46897062 TAAGCTTTCT
46897072 AAAATTTTAAATATATTAA-A
1 AAAATTTTAAATATATTAATA
* * *
46897092 AAAATGTTAAGTATAATTAATTTT
1 AAAATTTTAAATAT-ATTAA--TA
46897116 AAAATTTTAAATATACTTAATA
1 AAAATTTTAAATATA-TTAATA
46897138 TATATTTTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
20 12 0.34
21 5 0.14
22 1 0.03
23 1 0.03
24 16 0.46
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (21 bp):
AAAATTTTAAATATATTAATA
Found at i:46897315 original size:20 final size:20
Alignment explanation
Indices: 46897250--46897319 Score: 65
Period size: 20 Copynumber: 3.4 Consensus size: 20
46897240 AATTTTAAAA
*
46897250 TTTTAATATATTCAATATAGTT
1 TTTTAATATATTTAATATA--T
46897272 TTTTAAAATATATTTTAA-A-A-
1 TTTT--AATATA-TTTAATATAT
46897292 TTTTAATATATTTAATATAT
1 TTTTAATATATTTAATATAT
46897312 TTTTAATA
1 TTTTAATA
46897320 GGTAAAGAGA
Statistics
Matches: 41, Mismatches: 1, Indels: 14
0.73 0.02 0.25
Matches are distributed among these distances:
17 5 0.12
18 7 0.17
19 1 0.02
20 12 0.29
22 4 0.10
23 1 0.02
24 7 0.17
25 4 0.10
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (20 bp):
TTTTAATATATTTAATATAT
Found at i:46897361 original size:17 final size:17
Alignment explanation
Indices: 46897348--46897387 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
46897338 TTTTTAATAT
46897348 ATTT-AAAATTTTAAAA
1 ATTTAAAAATTTTAAAA
*
46897364 ATTTAAAAATTTTTAAA
1 ATTTAAAAATTTTAAAA
*
46897381 TTTTAAA
1 ATTTAAA
46897388 TATGTTAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTTAAAAATTTTAAAA
Found at i:46897362 original size:8 final size:8
Alignment explanation
Indices: 46897339--46897387 Score: 53
Period size: 8 Copynumber: 5.9 Consensus size: 8
46897329 AAAAAAGATT
*
46897339 TTTTAATA
1 TTTTAAAA
46897347 TATTTAAAA
1 T-TTTAAAA
46897356 TTTTAAAAA
1 TTTT-AAAA
*
46897365 TTTAAAAA
1 TTTTAAAA
*
46897373 TTTTTAAA
1 TTTTAAAA
46897381 TTTTAAA
1 TTTTAAA
46897388 TATGTTAAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
8 20 0.59
9 14 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (8 bp):
TTTTAAAA
Found at i:46897422 original size:176 final size:172
Alignment explanation
Indices: 46897111--46897444 Score: 482
Period size: 176 Copynumber: 1.9 Consensus size: 172
46897101 AGTATAATTA
*
46897111 ATTTTAAAATTTTAAATATACTTAATATATATTTTTAATAGGTAAAGATAAAAAAGATTTTTTTA
1 ATTTTAAAATTTTAAATATACTTAATATATATTTTTAATAGGTAAAGAGAAAAAAGATTTTTTTA
*
46897176 ATATATTTAAAATTTTAAAAAACTTAAAAAAATTAAATATATTAAAAAAATGTTAAGTATAACTA
66 ATATATTTAAAATTTTAAAAAACTTAAAAAAATTAAATATATTAAAAAAATGTTAAGTATAACCA
46897241 ATTTTAAAATTTTAATATA-TTCAATATAGTTTTTTAAAATAT
131 ATTTTAAAATTTTAATATACTT-AATATAGTTTTTTAAAATAT
*
46897283 ATTTTAAAATTTT-AATATA-TTTA-ATATATTTTTAATAGGTAAAGAGAAAAAAGA-TTTTTTA
1 ATTTTAAAATTTTAAATATACTTAATATATATTTTTAATAGGTAAAGAGAAAAAAGATTTTTTTA
* * *
46897344 ATATATTTAAAATTTT-AAAAATTTAAAAATTTTTAAATTTTAAATATGTTAAAGAAAATGTTGA
66 ATATATTTAAAATTTTAAAAAACTT-AAAA-----AAA--TTAAATATATTAAA-AAAATGTTAA
46897408 GTATAACCAATTTTAAAATTTTAATATACTTAATATA
122 GTATAACCAATTTTAAAATTTTAATATACTTAATATA
46897445 TTAAAATATA
Statistics
Matches: 146, Mismatches: 6, Indels: 16
0.87 0.04 0.10
Matches are distributed among these distances:
167 7 0.05
168 27 0.18
169 30 0.21
170 3 0.02
171 6 0.04
172 13 0.09
173 3 0.02
175 13 0.09
176 42 0.29
177 2 0.01
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (172 bp):
ATTTTAAAATTTTAAATATACTTAATATATATTTTTAATAGGTAAAGAGAAAAAAGATTTTTTTA
ATATATTTAAAATTTTAAAAAACTTAAAAAAATTAAATATATTAAAAAAATGTTAAGTATAACCA
ATTTTAAAATTTTAATATACTTAATATAGTTTTTTAAAATAT
Found at i:46926010 original size:45 final size:45
Alignment explanation
Indices: 46925955--46926040 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
46925945 ACAATGAATA
*
46925955 GAAATAGAGAAATGGAA-AAATTTAGAAATGATTATGGTTTTTTTC
1 GAAATAGAGAAAT-GAAGAAATTTAGAAATGAATATGGTTTTTTTC
* ** *
46926000 GAAATTGAGAAATGAAGCCATTTAGAAATGAATGTGGTTTT
1 GAAATAGAGAAATGAAGAAATTTAGAAATGAATATGGTTTT
46926041 CTCAAAATGA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 3 0.09
45 32 0.91
ACGTcount: A:0.41, C:0.03, G:0.22, T:0.34
Consensus pattern (45 bp):
GAAATAGAGAAATGAAGAAATTTAGAAATGAATATGGTTTTTTTC
Found at i:46926055 original size:6 final size:6
Alignment explanation
Indices: 46926044--46926117 Score: 78
Period size: 6 Copynumber: 12.2 Consensus size: 6
46926034 TGGTTTTCTC
* * *
46926044 AAAATG AAAATG GAAATG AAAATG GAAAT- AGAAATG AAAATG GAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG A-AAATG AAAATG AAAATG
* *
46926092 GAAATG GAAATG AAAATG AGAAATG A
1 AAAATG AAAATG AAAATG A-AAATG A
46926118 TTTATGTGCA
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
6 52 0.88
7 7 0.12
ACGTcount: A:0.59, C:0.00, G:0.24, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:46926062 original size:12 final size:12
Alignment explanation
Indices: 46926045--46926117 Score: 86
Period size: 12 Copynumber: 6.5 Consensus size: 12
46926035 GGTTTTCTCA
46926045 AAATGAAAATGG
1 AAATGAAAATGG
46926057 AAATGAAAATGG
1 AAATGAAAATGG
46926069 AAAT----A--G
1 AAATGAAAATGG
46926075 AAATGAAAATGG
1 AAATGAAAATGG
*
46926087 AAATGGAAATGG
1 AAATGAAAATGG
46926099 AAATGAAAATGAG
1 AAATGAAAATG-G
46926112 AAATGA
1 AAATGA
46926118 TTTATGTGCA
Statistics
Matches: 52, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
6 5 0.10
8 1 0.02
10 1 0.02
12 38 0.73
13 7 0.13
ACGTcount: A:0.59, C:0.00, G:0.25, T:0.16
Consensus pattern (12 bp):
AAATGAAAATGG
Found at i:46926067 original size:18 final size:18
Alignment explanation
Indices: 46926044--46926117 Score: 103
Period size: 18 Copynumber: 4.1 Consensus size: 18
46926034 TGGTTTTCTC
46926044 AAAATGAAAATGGAAATG
1 AAAATGAAAATGGAAATG
* *
46926062 AAAATGGAAATAGAAATG
1 AAAATGAAAATGGAAATG
*
46926080 AAAATGGAAATGGAAATG
1 AAAATGAAAATGGAAATG
*
46926098 GAAATGAAAATGAGAAATG
1 AAAATGAAAATG-GAAATG
46926117 A
1 A
46926118 TTTATGTGCA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
18 43 0.88
19 6 0.12
ACGTcount: A:0.59, C:0.00, G:0.24, T:0.16
Consensus pattern (18 bp):
AAAATGAAAATGGAAATG
Found at i:46936230 original size:2 final size:2
Alignment explanation
Indices: 46936223--46936253 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
46936213 TGTTTAATGA
46936223 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
46936254 ACACAATGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:46938247 original size:16 final size:15
Alignment explanation
Indices: 46938226--46938256 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
46938216 AGTTGTAATG
46938226 ATCCAAACTCGAAAAA
1 ATCCAAACTC-AAAAA
46938242 ATCCAAACTCAAAAA
1 ATCCAAACTCAAAAA
46938257 CTTCAAGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.58, C:0.26, G:0.03, T:0.13
Consensus pattern (15 bp):
ATCCAAACTCAAAAA
Found at i:46954280 original size:22 final size:22
Alignment explanation
Indices: 46954238--46954280 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
46954228 CGGGCTAGGG
* *
46954238 TATTGGGCTTTGGATTTTTGGT
1 TATTGGGCTTGGGATTATTGGT
46954260 TATTGGGC-TGGGATATATTGG
1 TATTGGGCTTGGGAT-TATTGG
46954281 GTAATTCGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.14, C:0.05, G:0.35, T:0.47
Consensus pattern (22 bp):
TATTGGGCTTGGGATTATTGGT
Found at i:46954728 original size:44 final size:44
Alignment explanation
Indices: 46954657--46954995 Score: 253
Period size: 44 Copynumber: 7.8 Consensus size: 44
46954647 ACTTGATTTG
* * * *
46954657 ATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTATTACTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTACTTCA
* * *
46954701 ATCTGCTCCACTACAACTTCAGGGAGATAGGA-CTATTGGCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATT-ACTTCA
* * * *
46954745 ATTTGCTCCACTGTAACTTCAGGGAGATAAGAATTGCCA-T-CTTCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAG-A-T-CTATTACTTCA
* * * * *
46954790 ATCTGCCCCACTGCAACTTTAGGGGGATAAGACCTGCTTAC-TCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-ATTACTTCA
* * ** * * *
46954834 GTTTGCTCTGCTGCAACTTCAGGGAGATAAGA-C--TTAATGCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTACTTCA
** * * *
46954875 ATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTACTTCA
* * * * **
46954919 ATCTGCTCCACTACAAATTTAGGGAGATAGGAT-TATCGGCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAT-TACTTCA
*
46954963 ATCTGCTCCACTGCAACTTCAAGGAGATAAGAT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
46954996 TTGCCCTTTT
Statistics
Matches: 224, Mismatches: 58, Indels: 26
0.73 0.19 0.08
Matches are distributed among these distances:
40 3 0.01
41 27 0.12
42 2 0.01
43 9 0.04
44 148 0.66
45 32 0.14
47 1 0.00
48 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTACTTCA
Found at i:46957374 original size:29 final size:28
Alignment explanation
Indices: 46957320--46957397 Score: 86
Period size: 29 Copynumber: 2.8 Consensus size: 28
46957310 GCTTTTAATA
* ***
46957320 TTTTTATTTTGACTTTGATGGATTTCTT
1 TTTTTTTTTTGACTTTGATTTTTTTCTT
46957348 TTTTTTCTTTTGACTTTGATTTTTTTCTT
1 TTTTTT-TTTTGACTTTGATTTTTTTCTT
* *
46957377 TTTGTTTTTT-ATTTTGATTTT
1 TTTTTTTTTTGACTTTGATTTT
46957398 GATTTTTTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
27 10 0.23
28 9 0.21
29 24 0.56
ACGTcount: A:0.10, C:0.06, G:0.10, T:0.73
Consensus pattern (28 bp):
TTTTTTTTTTGACTTTGATTTTTTTCTT
Found at i:46957407 original size:29 final size:28
Alignment explanation
Indices: 46957320--46957407 Score: 72
Period size: 29 Copynumber: 2.9 Consensus size: 28
46957310 GCTTTTAATA
46957320 TTTTTATTTTGACTTTGATGGATTTCTTTTTTT
1 TTTTTATTTTGA-TTT--T-GATTT-TTTTTTT
* *
46957353 TCTTTTGACTTTGATTTT--TTTCTTTTTGT
1 T-TTTT-ATTTTGATTTTGATTT-TTTTTTT
46957382 TTTTTATTTTGATTTTGATTTTTTTT
1 TTTTTATTTTGATTTTGATTTTTTTT
46957408 AGGATTGAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
27 10 0.21
28 9 0.19
29 14 0.29
32 1 0.02
33 1 0.02
34 7 0.15
35 6 0.12
ACGTcount: A:0.10, C:0.06, G:0.10, T:0.74
Consensus pattern (28 bp):
TTTTTATTTTGATTTTGATTTTTTTTTT
Found at i:46961925 original size:8 final size:8
Alignment explanation
Indices: 46961912--46961938 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
46961902 ATAAGTGTAC
46961912 ATACATAT
1 ATACATAT
46961920 ATACATAT
1 ATACATAT
46961928 ATACATAT
1 ATACATAT
46961936 ATA
1 ATA
46961939 TACTTATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (8 bp):
ATACATAT
Found at i:46962368 original size:13 final size:12
Alignment explanation
Indices: 46962337--46962367 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
46962327 TTTAAAAAAT
46962337 AAAAAAATTGCA
1 AAAAAAATTGCA
46962349 AAAAAAATTGCA
1 AAAAAAATTGCA
46962361 AAAAAAA
1 AAAAAAA
46962368 AAACAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.74, C:0.06, G:0.06, T:0.13
Consensus pattern (12 bp):
AAAAAAATTGCA
Found at i:46963112 original size:6 final size:6
Alignment explanation
Indices: 46963101--46963136 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
46963091 AGCCGAACCG
* *
46963101 AGAAAA AGAAAA AGAAAA AGAAAA ACAAAA ACAAAA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA
46963137 CTAAAATCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.83, C:0.06, G:0.11, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:46973890 original size:87 final size:86
Alignment explanation
Indices: 46973531--46973957 Score: 413
Period size: 84 Copynumber: 5.0 Consensus size: 86
46973521 TTATACCATT
* * * *
46973531 AAATCAAAATAAAATC-TGTTAAACAGCGGGAAAAAAAATCCTGAAACAGA-ATTATTTGA-TTA
1 AAATC-AAATAAAATCTTGTTAAACAGAGGG--AATAAATCCTGAAACAGATTTTATTTAATTTA
** * * * *
46973593 CGTCT-TTGTTTGGAAAGAAAACA
63 ATTCTAGTATTTGGAAACAAAATA
* * * *
46973616 ATATCGAATAAAATCTTGTTAAACA-ATGGGAATAAATCCTGAAACAAATTTTATTTATTTTAAT
1 AAATCAAATAAAATCTTGTTAAACAGA-GGGAATAAATCCTGAAACAGATTTTATTTAATTTAAT
*
46973680 T-T-GAATTTGGAAACAAAATA
65 TCTAGTATTTGGAAACAAAATA
** * *
46973700 AAATCAAATAAAATCTTGTTAAATGGCGGGAATAAATCCTGAAATAGATTTTATTTAATTTAATT
1 AAATCAAATAAAATCTTGTTAAACAGAGGGAATAAATCCTGAAACAGATTTTATTTAATTTAATT
*
46973765 CTA--ATTTAGAAACAAAATA
66 CTAGTATTTGGAAACAAAATA
* * * * *
46973784 AAATCAAATAAAATCTTGTTAAACAGAGGAAATTAATCCCGGAACAGATTTTATTTAATCTAATT
1 AAATCAAATAAAATCTTGTTAAACAGAGGGAATAAATCCTGAAACAGATTTTATTTAATTTAA-T
* *
46973849 TCTAGTTTTTGGCAACAAAATA
65 TCTAGTATTTGGAAACAAAATA
* * * ** *
46973871 AAATCGAATAAAATTTTGTTAAACAGCGGGAATAAATCCAAAAATAGATTTTATTTAATTTAATT
1 AAATCAAATAAAATCTTGTTAAACAGAGGGAATAAATCCTGAAACAGATTTTATTTAATTTAA-T
* * *
46973936 TCTCGTTTTTGGCAACAAAATA
65 TCTAGTATTTGGAAACAAAATA
46973958 GAATTGTAAT
Statistics
Matches: 285, Mismatches: 47, Indels: 18
0.81 0.13 0.05
Matches are distributed among these distances:
83 16 0.06
84 154 0.54
85 26 0.09
87 89 0.31
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (86 bp):
AAATCAAATAAAATCTTGTTAAACAGAGGGAATAAATCCTGAAACAGATTTTATTTAATTTAATT
CTAGTATTTGGAAACAAAATA
Found at i:46973892 original size:171 final size:168
Alignment explanation
Indices: 46973622--46973935 Score: 441
Period size: 171 Copynumber: 1.9 Consensus size: 168
46973612 AACAATATCG
* * * *
46973622 AATAAAATCTTGTTAAACAATGGGAATAAATCCTGAAACAAATTTTATTTATTTTAATTTGAATT
1 AATAAAATCTTGTTAAACAATGGAAATAAATCCCGAAACAAATTTTATTTAATCTAATTTGAATT
** **
46973687 TGGAAACAAAATAAAATCAAATAAAATCTTGTTAAATGGCGGGAATAAATCCTGAAATAGATTTT
66 TGGAAACAAAATAAAATCAAATAAAATCTTGTTAAACAGCGGGAATAAATCCAAAAATAGATTTT
46973752 ATTTAATTTAATTCTAATTTAGAAACAAAATAAAATCA
131 ATTTAATTTAATTCTAATTTAGAAACAAAATAAAATCA
* * *
46973790 AATAAAATCTTGTTAAACAGA-GGAAATTAATCCCGGAACAGATTTTATTTAATCTAATTTCTAG
1 AATAAAATCTTGTTAAACA-ATGGAAATAAATCCCGAAACAAATTTTATTTAATCTAA-TT-T-G
** * * *
46973854 TTTTTGGCAACAAAATAAAATCGAATAAAATTTTGTTAAACAGCGGGAATAAATCCAAAAATAGA
62 AATTTGGAAACAAAATAAAATCAAATAAAATCTTGTTAAACAGCGGGAATAAATCCAAAAATAGA
46973919 TTTTATTTAATTTAATT
127 TTTTATTTAATTTAATT
46973936 TCTCGTTTTT
Statistics
Matches: 126, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
168 48 0.38
169 3 0.02
170 1 0.01
171 74 0.59
ACGTcount: A:0.45, C:0.09, G:0.11, T:0.35
Consensus pattern (168 bp):
AATAAAATCTTGTTAAACAATGGAAATAAATCCCGAAACAAATTTTATTTAATCTAATTTGAATT
TGGAAACAAAATAAAATCAAATAAAATCTTGTTAAACAGCGGGAATAAATCCAAAAATAGATTTT
ATTTAATTTAATTCTAATTTAGAAACAAAATAAAATCA
Found at i:46974072 original size:79 final size:79
Alignment explanation
Indices: 46973989--46974170 Score: 256
Period size: 79 Copynumber: 2.3 Consensus size: 79
46973979 ACGGCGTGAG
* *
46973989 TCAATCCCGAAACGAATTTTATTTTACTCATTTTTGGAAATAAAACAAAATGTGGAATAAAATCG
1 TCAATCCCGAAACGAATTTTATTTTACTCATTTTTGGAAATAAAACAAAATGTCGAATAAAACCG
* * **
46974054 TTGAGCAGTAGGAA
66 CTGAACAACAGGAA
* * * *
46974068 TCAATCCCGAAATGAATTTTATTATACTCATTTTTGGAAATAAAACATAATTTCGAATAAAACCG
1 TCAATCCCGAAACGAATTTTATTTTACTCATTTTTGGAAATAAAACAAAATGTCGAATAAAACCG
*
46974133 CTGAACAACGGGAA
66 CTGAACAACAGGAA
*
46974147 TCAATCCCGAAACGGATTTTATTT
1 TCAATCCCGAAACGAATTTTATTT
46974171 ACTTTTGATT
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
79 89 1.00
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.31
Consensus pattern (79 bp):
TCAATCCCGAAACGAATTTTATTTTACTCATTTTTGGAAATAAAACAAAATGTCGAATAAAACCG
CTGAACAACAGGAA
Found at i:46974934 original size:10 final size:10
Alignment explanation
Indices: 46974919--46974948 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
46974909 GAAAACACGT
46974919 GAAAAATTTAA
1 GAAAAATTT-A
46974930 GAAAAATTTA
1 GAAAAATTTA
46974940 GAAAAATTT
1 GAAAAATTT
46974949 TAACTGCAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (10 bp):
GAAAAATTTA
Found at i:46975297 original size:21 final size:19
Alignment explanation
Indices: 46975271--46975311 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
46975261 AATCTATTTG
*
46975271 AAACATGATCAAACACACTCA
1 AAACATGA-CAAA-ACAATCA
46975292 AAACATGACAAAACAATCA
1 AAACATGACAAAACAATCA
46975311 A
1 A
46975312 CCTAGGTGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 4 0.21
21 8 0.42
ACGTcount: A:0.59, C:0.24, G:0.05, T:0.12
Consensus pattern (19 bp):
AAACATGACAAAACAATCA
Found at i:46977246 original size:10 final size:10
Alignment explanation
Indices: 46977227--46977260 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
46977217 CGTCCTTCTC
46977227 CTTTCTTCTTT
1 CTTTC-TCTTT
46977238 CTTTCTCTTT
1 CTTTCTCTTT
46977248 CTTTCT-TTT
1 CTTTCTCTTT
46977257 CTTT
1 CTTT
46977261 TTAATTTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 7 0.30
10 11 0.48
11 5 0.22
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (10 bp):
CTTTCTCTTT
Found at i:46977249 original size:14 final size:13
Alignment explanation
Indices: 46977228--46977260 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
46977218 GTCCTTCTCC
46977228 TTTC-TTCTTTCT
1 TTTCTTTCTTTCT
46977240 TTCTCTTTCTTTCT
1 TT-TCTTTCTTTCT
46977254 TTTCTTT
1 TTTCTTT
46977261 TTAATTTGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 2 0.11
13 7 0.37
14 10 0.53
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTCTTTCTTTCT
Found at i:46981527 original size:23 final size:23
Alignment explanation
Indices: 46981497--46981543 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
46981487 TGTGATACTA
* *
46981497 ACTGTACCTGTAACTCATCGCGT
1 ACTGTACCTATAACTCATCACGT
46981520 ACTGTACCTATAACTCATCACGT
1 ACTGTACCTATAACTCATCACGT
46981543 A
1 A
46981544 AACCATGCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.30
Consensus pattern (23 bp):
ACTGTACCTATAACTCATCACGT
Found at i:46992520 original size:12 final size:11
Alignment explanation
Indices: 46992505--46992581 Score: 70
Period size: 12 Copynumber: 6.7 Consensus size: 11
46992495 TTAAGTAAAT
46992505 TAATATATATAA
1 TAATA-ATATAA
46992517 TAATAATAT--
1 TAATAATATAA
46992526 TAATAGCA-ATAA
1 TAATA--ATATAA
*
46992538 TAATACTAATAA
1 TAATAAT-ATAA
46992550 TAATAATATTAA
1 TAATAATA-TAA
46992562 TAATAATAGTAA
1 TAATAATA-TAA
46992574 TAATAATA
1 TAATAATA
46992582 ATAAACTAAT
Statistics
Matches: 55, Mismatches: 3, Indels: 14
0.76 0.04 0.19
Matches are distributed among these distances:
9 5 0.09
10 2 0.04
11 6 0.11
12 42 0.76
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (11 bp):
TAATAATATAA
Found at i:46992521 original size:3 final size:3
Alignment explanation
Indices: 46992513--46992585 Score: 92
Period size: 3 Copynumber: 24.3 Consensus size: 3
46992503 ATTAATATAT
* ** * *
46992513 ATA ATA ATA ATA TTA ATA GCA ATA ATA ATA CTA ATA ATA ATA ATA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
46992561 ATA ATA ATA GTA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
46992586 ACTAATTAAT
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:46992595 original size:15 final size:16
Alignment explanation
Indices: 46992514--46992595 Score: 73
Period size: 15 Copynumber: 5.2 Consensus size: 16
46992504 TTAATATATA
*
46992514 TAATAATAATATTAAT
1 TAATAATAATACTAAT
*
46992530 AGCAATAATAATACTAA-
1 --TAATAATAATACTAAT
*
46992547 TAATAATAATATTAA-
1 TAATAATAATACTAAT
* *
46992562 TAATAATAGTAATAA-
1 TAATAATAATACTAAT
46992577 TAATAATAA-ACTAAT
1 TAATAATAATACTAAT
46992592 TAAT
1 TAAT
46992596 GGACTAAATT
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 4 0.07
15 38 0.69
18 13 0.24
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (16 bp):
TAATAATAATACTAAT
Found at i:46994165 original size:96 final size:95
Alignment explanation
Indices: 46994042--46994354 Score: 324
Period size: 96 Copynumber: 3.4 Consensus size: 95
46994032 GTTTGATATG
*
46994042 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAATTTATAGCTTCAATCTGTTCCACTAC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAATTTATA-CTTCAATCTGTTCCACTGC
*
46994107 AACTTCAGGGAAATAAGATTCGCTATCTTCA
65 AACTTTAGGGAAATAAGATTCGCTATCTTCA
* * * * * * *
46994138 ATCTGCTCCACTGCAACTTCAGGGAGATAAAACTTG-----TA-ACTTCAACCTGCTCCATTGCA
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAATTTATACTTCAATCTGTTCCACTGCA
* * * * *
46994197 ACTTTATGGAGATAAGATTTG--AT-AT-G
66 ACTTTAGGGAAATAAGATTCGCTATCTTCA
* *
46994223 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATAATTTATAACTTCAATCTGTTCCACTGC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAATTTAT-ACTTCAATCTGTTCCACTGC
* *
46994288 AAATTTAGGGAAATAAGATTCACTATCTTCA
65 AACTTTAGGGAAATAAGATTCGCTATCTTCA
* * * *
46994319 ATCTGCTCAACTGTAACTTTATGA-AGATAAGGTTTG
1 ATCTGCTCTACTGCAACTTCA-GAGAGATAAGATTTG
46994355 ATATGATCTG
Statistics
Matches: 169, Mismatches: 36, Indels: 24
0.74 0.16 0.10
Matches are distributed among these distances:
85 30 0.18
86 1 0.01
87 2 0.01
89 33 0.20
90 3 0.02
91 2 0.01
92 34 0.20
94 2 0.01
95 1 0.01
96 59 0.35
97 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (95 bp):
ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAATTTATACTTCAATCTGTTCCACTGCA
ACTTTAGGGAAATAAGATTCGCTATCTTCA
Found at i:46994197 original size:44 final size:45
Alignment explanation
Indices: 46994088--46994699 Score: 181
Period size: 45 Copynumber: 13.6 Consensus size: 45
46994078 TAATTTATAG
* * * * *
46994088 CTTCAATCTGTTCCACTACAACTTCAGGGAAATAAGATTCGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAATTCGCTAA
46994133 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAACTT-G-TAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAA-TTCGCTAA
* * * * * * *
46994177 CTTCAACCTGCTCCATTGCAACTTTATGGAGATAAGATTTGAT-A
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAATTCGCTAA
* * * ***
46994221 --T-GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATAATTTATAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA-A---AT--TCGCTAA
* * * * * * *
46994269 CTTCAATCTGTTCCACTGCAAATTTAGGGAAATAAGATTCACTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAATTCGCTAA
* * * * * ** * *
46994314 CTTCAATCTGCTCAACTGTAACTTTATGAAGATAAGGTTTGAT-A
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAATTCGCTAA
* * * ** * * *
46994358 --T-GATCTGCTCTACTGCAGCTTCAAAGATATAAGA-TCTGTAATTTATA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAATTC-G----CTA-A
* ** * * *
46994405 GCTTAAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
1 -CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAATTCGCTAA
* ** *
46994451 GTTCAGCCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-G-TAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA-AATTCGCTAA
* * * ** * *
46994495 GTTCAACCTGCTCCACTGCAACCTT-ATGGAGATAAGGTTTGAT-A
1 CTTCAATCTGCTCCACTGCAA-CTTCAGGGAGATAAAATTCGCTAA
* * * * *
46994539 --T-GATCTGCTCTACTGCAGCTTCAGAGAGATAAGA-TCTGTAACTTATA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAATTC-G---C-TA-A
* * * *
46994586 GCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTAT
1 -CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAATTCGCTAA
* * * *
46994632 GTTCAGTCTGCTCTACTGCAACTTCAGGGAGATAAGACTT--C--A
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA-AATTCGCTAA
* *
46994674 CTTCAATCCGCTCCACTGTAACTTCA
1 CTTCAATCTGCTCCACTGCAACTTCA
46994700 ATGGTATAGA
Statistics
Matches: 416, Mismatches: 108, Indels: 89
0.68 0.18 0.15
Matches are distributed among these distances:
40 5 0.01
41 71 0.17
42 24 0.06
43 4 0.01
44 70 0.17
45 137 0.33
46 6 0.01
47 12 0.03
48 2 0.00
50 3 0.01
51 78 0.19
52 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAATTCGCTAA
Found at i:46994422 original size:318 final size:318
Alignment explanation
Indices: 46993818--46994655 Score: 1125
Period size: 318 Copynumber: 2.7 Consensus size: 318
46993808 TGAAACATTT
* * * * * * * *
46993818 GCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAAATAAGATTTGTAGCTTCCACATGTTTCAC
1 GCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCAC
* * * * * ** *
46993883 TGTAATTTTAAGGAAATAAGGTCTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCC
66 TGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCT
* * * * * * * *
46993948 ATCATTT-TAA--TC---C-GCTCCACTGCAACTTCAGAGAGATAGGATT-GGTTTCTTTAATCT
131 ATAATTTATAACTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCT
* * * * * *
46994005 CCTCCACAGGAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAGAGAGAT
196 GCTCAACTGCAACTTTATGAAGATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAAAGAGAT
* * *
46994070 AAGATTTGTAATTTATAGCTTCAATCTGTTCCACTACAACTTCAGGGAAATAAGATTC
261 AAGATCTGTAATTTATAGCTTAAATCTATTCCACTACAACTTCAGGGAAATAAGATTC
* * *
46994128 GCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAACTTGTAACTTCAACCTGCTCCAT
1 GCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCAC
*
46994193 TGCAACTTTATGGAGATAAGATTTGATATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCT
66 TGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCT
* * *
46994258 ATAATTTATAACTTCAATCTGTTCCACTGCAAATTTAGGGAAATAAGATTCACTATCTTCAATCT
131 ATAATTTATAACTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCT
* * *
46994323 GCTCAACTGTAACTTTATGAAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAAAGATAT
196 GCTCAACTGCAACTTTATGAAGATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAAAGAGAT
*
46994388 AAGATCTGTAATTTATAGCTTAAATCTATTCCACTGCAACTTCAGGGAAATAAGATTC
261 AAGATCTGTAATTTATAGCTTAAATCTATTCCACTACAACTTCAGGGAAATAAGATTC
* * *
46994446 GCTATGTTCAGCCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAAGTTCAACCTGCTCCAC
1 GCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCAC
* *
46994511 TGCAACCTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAGAGAGATAAGATCT
66 TGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCT
* * * * *
46994576 GTAACTTATAGCTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATGTTCAGTCT
131 ATAATTTATAACTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCT
*
46994641 GCTCTACTGCAACTT
196 GCTCAACTGCAACTT
46994656 CAGGGAGATA
Statistics
Matches: 458, Mismatches: 62, Indels: 8
0.87 0.12 0.02
Matches are distributed among these distances:
310 116 0.25
311 3 0.01
313 2 0.00
316 1 0.00
317 24 0.05
318 312 0.68
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (318 bp):
GCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCAC
TGCAACTTTATGGAGATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCT
ATAATTTATAACTTCAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCT
GCTCAACTGCAACTTTATGAAGATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAAAGAGAT
AAGATCTGTAATTTATAGCTTAAATCTATTCCACTACAACTTCAGGGAAATAAGATTC
Found at i:46994484 original size:137 final size:137
Alignment explanation
Indices: 46994144--46994487 Score: 458
Period size: 137 Copynumber: 2.5 Consensus size: 137
46994134 TTCAATCTGC
* * * *
46994144 TCCACTGCAACTTCAGGGAGATAAAACTT-G-TAACTTCAACCTGCTCCATTGCAACTTTATGGA
1 TCCACTGCAACTTCAGGGAAATAAGA-TTCGCTATCTTCAACCTGCTCCACTGCAACTTTATGGA
*
46994207 GATAAGATTTGATATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATAATTTATAACTT
65 GATAAGATTTGATATGATCTGCTCTACTGCAACTTCAAAGAGATAAGATCTATAATTTATAACTT
* *
46994272 CAATCTGT
130 AAATCTAT
* * * * * * *
46994280 TCCACTGCAAATTTAGGGAAATAAGATTCACTATCTTCAATCTGCTCAACTGTAACTTTATGAAG
1 TCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAACCTGCTCCACTGCAACTTTATGGAG
* * * * *
46994345 ATAAGGTTTGATATGATCTGCTCTACTGCAGCTTCAAAGATATAAGATCTGTAATTTATAGCTTA
66 ATAAGATTTGATATGATCTGCTCTACTGCAACTTCAAAGAGATAAGATCTATAATTTATAACTTA
46994410 AATCTAT
131 AATCTAT
* * * *
46994417 TCCACTGCAACTTCAGGGAAATAAGATTCGCTATGTTCAGCCTGCTCCACTGCAACTTCAGGGAG
1 TCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAACCTGCTCCACTGCAACTTTATGGAG
46994482 ATAAGA
66 ATAAGA
46994488 CTTGTAAGTT
Statistics
Matches: 175, Mismatches: 31, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
135 2 0.01
136 22 0.13
137 151 0.86
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (137 bp):
TCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAACCTGCTCCACTGCAACTTTATGGAG
ATAAGATTTGATATGATCTGCTCTACTGCAACTTCAAAGAGATAAGATCTATAATTTATAACTTA
AATCTAT
Done.