Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62175169
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 981721 characters in sequence are not A, C, G, or T
File 162 of 202
Found at i:50800881 original size:8 final size:8
Alignment explanation
Indices: 50800868--50800932 Score: 67
Period size: 8 Copynumber: 7.9 Consensus size: 8
50800858 GGTGTTGTTG
50800868 GTTTATTT
1 GTTTATTT
50800876 GTTTATTT
1 GTTTATTT
* *
50800884 GTATGTTT
1 GTTTATTT
50800892 GTTTATTT
1 GTTTATTT
* *
50800900 GTTCAATT
1 GTTTATTT
*
50800908 ATTTCATTT
1 GTTT-ATTT
50800917 CGTTTATTT
1 -GTTTATTT
50800926 GTTTATT
1 GTTTATT
50800933 AAAACATGAT
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
8 35 0.78
9 7 0.16
10 3 0.07
ACGTcount: A:0.15, C:0.05, G:0.12, T:0.68
Consensus pattern (8 bp):
GTTTATTT
Found at i:50804009 original size:27 final size:27
Alignment explanation
Indices: 50803971--50804039 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 27
50803961 GAGGAGGGTA
**
50803971 TCCCATGGGCGGCACCAAAGGTGCCTT
1 TCCCATGGGCGGCACCAAAGGTGCCCC
* * *
50803998 TCCCATAGGCGGCACCGATGGTGCCCC
1 TCCCATGGGCGGCACCAAAGGTGCCCC
50804025 TCCCATGGGCGGCAC
1 TCCCATGGGCGGCAC
50804040 TGCCCATATA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.16, C:0.38, G:0.30, T:0.16
Consensus pattern (27 bp):
TCCCATGGGCGGCACCAAAGGTGCCCC
Found at i:50804107 original size:10 final size:10
Alignment explanation
Indices: 50804092--50804231 Score: 82
Period size: 10 Copynumber: 14.3 Consensus size: 10
50804082 GAAGGAGAGG
50804092 GAAAGAAGAA
1 GAAAGAAGAA
50804102 GAAAG-A-AA
1 GAAAGAAGAA
50804110 GAAAGAAGAA
1 GAAAGAAGAA
50804120 GAAAGAA-AA
1 GAAAGAAGAA
* *
50804129 GGAAAGGAGAG
1 -GAAAGAAGAA
50804140 GAAAG-A-AA
1 GAAAGAAGAA
*
50804148 GAAA-AATAA
1 GAAAGAAGAA
* *
50804157 GGAAAGAATAG
1 -GAAAGAAGAA
*
50804168 GAAAAAAGAA
1 GAAAGAAGAA
*
50804178 G-AAGAAAAAA
1 GAAAG-AAGAA
50804188 GAAAGAA-AA
1 GAAAGAAGAA
*
50804197 GGAAAGGAGAA
1 -GAAAGAAGAA
*
50804208 GAGAA-AAAAA
1 GA-AAGAAGAA
50804218 TGAAAGAAGAA
1 -GAAAGAAGAA
50804229 GAA
1 GAA
50804232 GAGGGAAGGA
Statistics
Matches: 102, Mismatches: 13, Indels: 30
0.70 0.09 0.21
Matches are distributed among these distances:
8 13 0.13
9 11 0.11
10 60 0.59
11 18 0.18
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (10 bp):
GAAAGAAGAA
Found at i:50804133 original size:38 final size:38
Alignment explanation
Indices: 50804091--50804257 Score: 140
Period size: 38 Copynumber: 4.6 Consensus size: 38
50804081 AGAAGGAGAG
50804091 GGAAAGAAGAAGAAAGAAAGAAAGAAGAAGAAAGAAAA
1 GGAAAGAAGAAGAAAGAAAGAAAGAAGAAGAAAGAAAA
* * * *
50804129 GGAAAGGAGAGGAAAGAAAGAAA-AATAAGGAAAGAATA
1 GGAAAGAAGAAGAAAGAAAGAAAGAAGAA-GAAAGAAAA
* *
50804167 GGAAAAAAGAAG-AAGAAA-AAAG-A-AAGAAAAGGAAA
1 GGAAAGAAGAAGAAAGAAAGAAAGAAGAAG-AAAGAAAA
* *
50804202 GGAGAAG-AGAA-AAA-AATGAAAGAAGAAG-AAG--AG
1 GGA-AAGAAGAAGAAAGAAAGAAAGAAGAAGAAAGAAAA
* *
50804235 GGAAGGAAGAAAAAAGAAAGAAA
1 GGAAAGAAGAAGAAAGAAAGAAA
50804258 AAATGTAATT
Statistics
Matches: 104, Mismatches: 14, Indels: 25
0.73 0.10 0.17
Matches are distributed among these distances:
32 2 0.02
33 8 0.08
34 6 0.06
35 30 0.29
36 7 0.07
37 13 0.12
38 38 0.37
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (38 bp):
GGAAAGAAGAAGAAAGAAAGAAAGAAGAAGAAAGAAAA
Found at i:50804146 original size:30 final size:30
Alignment explanation
Indices: 50804093--50804202 Score: 58
Period size: 28 Copynumber: 3.8 Consensus size: 30
50804083 AAGGAGAGGG
50804093 AAAGAAGAAGAAAG-AAA-GAAAGAAGAA-G
1 AAAGAAGAAGAAAGAAAAGGAAAGAA-AAGG
* *
50804121 AAAGAA-AAGGAAAGGAGAGGAAAG-AAA-G
1 AAAGAAGAA-GAAAGAAAAGGAAAGAAAAGG
* * *
50804149 AAA-AATAAGGAAAGAATAGGAAAAAAGAA-G
1 AAAGAAGAA-GAAAGAAAAGGAAAGAA-AAGG
*
50804179 -AAGAAAAAAGAAAGAAAAGGAAAG
1 AAAG-AAGAAGAAAGAAAAGGAAAG
50804203 GAGAAGAGAA
Statistics
Matches: 67, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
27 4 0.06
28 32 0.48
29 6 0.09
30 21 0.31
31 4 0.06
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.02
Consensus pattern (30 bp):
AAAGAAGAAGAAAGAAAAGGAAAGAAAAGG
Found at i:50804208 original size:30 final size:30
Alignment explanation
Indices: 50804112--50804258 Score: 122
Period size: 30 Copynumber: 4.7 Consensus size: 30
50804102 GAAAGAAAGA
* * *
50804112 AAGAAGAAGAAAGAAAAGGAAAGGAGAGGA-
1 AAGAAGAAAAAAG-AAAGAAAAGGAAAGGAG
* **
50804142 AAGAAAGAAAAATAAGGAAAGAATAGGAAAAAAG
1 AAG-AAG-AAAA-AA-GAAAGAAAAGGAAAGGAG
50804176 AAGAAGAAAAAAGAAAGAAAAGGAAAGGAG
1 AAGAAGAAAAAAGAAAGAAAAGGAAAGGAG
50804206 AAG-AGAAAAAAATGAAAGAAGAA-GAAGAGG-G
1 AAGAAG-AAAAAA-GAAAGAA-AAGGAA-AGGAG
50804237 AAGGAAGAAAAAAGAAAGAAAA
1 AA-GAAGAAAAAAGAAAGAAAA
50804259 AATGTAATTT
Statistics
Matches: 97, Mismatches: 9, Indels: 22
0.76 0.07 0.17
Matches are distributed among these distances:
29 2 0.02
30 29 0.30
31 25 0.26
32 19 0.20
33 18 0.19
34 4 0.04
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (30 bp):
AAGAAGAAAAAAGAAAGAAAAGGAAAGGAG
Found at i:50804223 original size:21 final size:22
Alignment explanation
Indices: 50804077--50804202 Score: 61
Period size: 20 Copynumber: 6.5 Consensus size: 22
50804067 TGGGTGGGGG
* * *
50804077 GAAGAGAAGGAGAGGGAAAGAA
1 GAAGAGAAAGAAAAGGAAAGAA
50804099 G-A-AGAAAG-AAA-GAAAGAA
1 GAAGAGAAAGAAAAGGAAAGAA
*
50804117 GAAG--AAAGAAAAGGAAAGGA
1 GAAGAGAAAGAAAAGGAAAGAA
50804137 G-AG-GAAAG-AAA-GAAA-AA
1 GAAGAGAAAGAAAAGGAAAGAA
* * *
50804154 TAAG-GAAAGAATAGGAAAAAA
1 GAAGAGAAAGAAAAGGAAAGAA
50804175 GAAGA-AGAA-AAAA-GAAAGAA
1 GAAGAGA-AAGAAAAGGAAAGAA
50804195 -AAG-GAAAG
1 GAAGAGAAAG
50804203 GAGAAGAGAA
Statistics
Matches: 81, Mismatches: 10, Indels: 29
0.68 0.08 0.24
Matches are distributed among these distances:
17 1 0.01
18 25 0.31
19 16 0.20
20 26 0.32
21 10 0.12
22 3 0.04
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.02
Consensus pattern (22 bp):
GAAGAGAAAGAAAAGGAAAGAA
Found at i:50804245 original size:68 final size:65
Alignment explanation
Indices: 50804091--50804229 Score: 152
Period size: 68 Copynumber: 2.0 Consensus size: 65
50804081 AGAAGGAGAG
* * * * * *
50804091 GGAAAGAAGAAGAAAGAAAGAAAGAAGAAGAAAGAAAAGGAAAGGAGAGGAAAGAAAGAAAAATA
1 GGAAAGAATAGGAAA-AAAAAAAGAAAAAGAAAGAAAAGGAAAGGAGAGGAAAAAAAGAAAAAGA
50804156 A
65 A
50804157 GGAAAGAATAGGAAAAAAGAAGAAGAAAAAAGAAAGAAAAGGAAAGGAGAAGAGAAAAAAATGAA
1 GGAAAGAATAGGAAAAAA-AA-AAG-AAAAAGAAAGAAAAGGAAAGGAG-AG-GAAAAAAA-GAA
50804222 AGAAGAA
60 A-AAGAA
50804229 G
1 G
50804230 AAGAGGGAAG
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
65 3 0.05
66 14 0.23
67 3 0.05
68 22 0.37
69 2 0.03
70 7 0.12
71 4 0.07
72 5 0.08
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.02
Consensus pattern (65 bp):
GGAAAGAATAGGAAAAAAAAAAGAAAAAGAAAGAAAAGGAAAGGAGAGGAAAAAAAGAAAAAGAA
Found at i:50804248 original size:31 final size:32
Alignment explanation
Indices: 50804118--50804258 Score: 125
Period size: 31 Copynumber: 4.3 Consensus size: 32
50804108 AAGAAAGAAG
*
50804118 AAGAAAGAAAAGGAAAGGAGAGGAAAGAAAGAAAAA
1 AAGAAAGAAAAGGAAAGGAGA--AGAG-AAG-AAAA
*
50804154 TAAGGAAAGAATAGGAAA--A-AAGAAGAAGAAAA
1 -AA-GAAAGAAAAGGAAAGGAGAAG-AGAAGAAAA
50804186 AAGAAAGAAAAGGAAAGGAGAAGAGAA-AAAA
1 AAGAAAGAAAAGGAAAGGAGAAGAGAAGAAAA
*
50804217 ATGAAAGAAGAA-GAAGAGG-GAAG-GAAGAAAA
1 AAGAAAGAA-AAGGAA-AGGAGAAGAGAAGAAAA
50804248 AAGAAAGAAAA
1 AAGAAAGAAAA
50804259 AATGTAATTT
Statistics
Matches: 91, Mismatches: 5, Indels: 23
0.76 0.04 0.19
Matches are distributed among these distances:
30 18 0.20
31 33 0.36
32 14 0.15
33 7 0.08
34 2 0.02
35 1 0.01
36 1 0.01
37 2 0.02
38 13 0.14
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (32 bp):
AAGAAAGAAAAGGAAAGGAGAAGAGAAGAAAA
Found at i:50804258 original size:10 final size:10
Alignment explanation
Indices: 50804092--50804259 Score: 66
Period size: 10 Copynumber: 17.0 Consensus size: 10
50804082 GAAGGAGAGG
*
50804092 GAAAGAAGAA
1 GAAAGAAAAA
50804102 GAAAG--AAA
1 GAAAGAAAAA
*
50804110 GAAAGAAGAA
1 GAAAGAAAAA
*
50804120 GAAAGAAAAG
1 GAAAGAAAAA
* * *
50804130 GAAAGGAGAG
1 GAAAGAAAAA
50804140 GAAAG--AAA
1 GAAAGAAAAA
*
50804148 GAAA-AATAAG
1 GAAAGAA-AAA
* *
50804158 GAAAGAATAG
1 GAAAGAAAAA
50804168 GAAA-AAAGAA
1 GAAAGAAA-AA
50804178 G-AAGAAAAAA
1 GAAAG-AAAAA
*
50804188 GAAAGAAAAG
1 GAAAGAAAAA
*
50804198 GAAAGGAGAAGA
1 GAAA-GA-AAAA
*
50804210 GAAA-AAAAT
1 GAAAGAAAAA
*
50804219 GAAAGAAGAA
1 GAAAGAAAAA
**
50804229 G-AAGAGGGAA
1 GAAAGA-AAAA
*
50804239 GGAAGAAAAAA
1 GAAAG-AAAAA
50804250 GAAAGAAAAA
1 GAAAGAAAAA
50804260 ATGTAATTTT
Statistics
Matches: 119, Mismatches: 23, Indels: 32
0.68 0.13 0.18
Matches are distributed among these distances:
8 12 0.10
9 14 0.12
10 67 0.56
11 19 0.16
12 7 0.06
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (10 bp):
GAAAGAAAAA
Found at i:50804809 original size:16 final size:15
Alignment explanation
Indices: 50804783--50804812 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
50804773 GTACTAAAAT
50804783 AATATAAAATAATAA
1 AATATAAAATAATAA
50804798 AATATGAAAATAATA
1 AATAT-AAAATAATA
50804813 TATTTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
AATATAAAATAATAA
Found at i:50805163 original size:314 final size:319
Alignment explanation
Indices: 50804592--50805364 Score: 1333
Period size: 314 Copynumber: 2.4 Consensus size: 319
50804582 AATGGTATAT
*
50804592 TTAATAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAAATTAGAATTTATGATAT
1 TTAATAAATTTCAAACATAATGCACTGAAATAATGTAAAATTAT-AAAATTAGAAATTATGATAT
* * * *
50804657 TTTTTAAAATAATTAAATGCAGAGAAAAAAATACTAACAAATGGCCAAAGTAAGAGTGTTTTACT
65 TTTTTAAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACT
50804722 AAAATTTTTTAAAAATTCAGAAATAATTAATAAAAATATTTCAAACAAAATGTACTAAAATAATA
130 -AAATTTTTTAAAAATTCAGAAATAATTAATAAAAATATTTCAAACAAAATGTACTAAAATAATA
**
50804787 TAAAATAATAAAATATGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAATAC
194 TAAAATAATAAAATACAAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAATAC
50804852 GAGCAAAGGGCAGGAATAAG-GGTTTTTTTACA-CTAAATTAATTT-AAAAA-A-ACTAAA
259 GAGCAAAGGGCAGGAATAAGAGGTTTTTTTACACCTAAATTAATTTAAAAAACACACTAAA
*
50804908 TTAATAAATTTCAAACATAATGCACTGAAATAAAGTAAAATTATAAAATTAGAAATTATGATATG
1 TTAATAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATAT-
*
50804973 TTTTTAAAATAATAAAATACGGAG-AAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACT
65 TTTTTAAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACT
* *
50805037 AAATTTTTTAAAAATTCAGAAATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATAT
130 AAATTTTTTAAAAATTCAGAAATAATTAATAAAAATATTTCAAACAAAATGTACTAAAATAATAT
50805102 AAAATAATAAAATACAAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAATACG
195 AAAATAATAAAATACAAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAATACG
* *
50805167 AGCAAAGGGCGGGAATAAGAGTTTTTTTTACACCTAAATTAATTTAAAAAACACACTAAA
260 AGCAAAGGGCAGGAATAAGAGGTTTTTTTACACCTAAATTAATTTAAAAAACACACTAAA
50805227 TTAATAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATT
1 TTAATAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATT
* *
50805292 TTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTTTTTTACTA
66 TTTTAAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACTA
*
50805357 ACTTTTTT
131 AATTTTTT
50805365 TTCAACTTGC
Statistics
Matches: 432, Mismatches: 18, Indels: 11
0.94 0.04 0.02
Matches are distributed among these distances:
314 144 0.33
315 68 0.16
316 76 0.18
317 5 0.01
318 23 0.05
319 116 0.27
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.31
Consensus pattern (319 bp):
TTAATAAATTTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATT
TTTTAAAATAATAAAATGCGGAGAAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTTTTACTA
AATTTTTTAAAAATTCAGAAATAATTAATAAAAATATTTCAAACAAAATGTACTAAAATAATATA
AAATAATAAAATACAAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGGAAAATAATACGA
GCAAAGGGCAGGAATAAGAGGTTTTTTTACACCTAAATTAATTTAAAAAACACACTAAA
Found at i:50807055 original size:12 final size:12
Alignment explanation
Indices: 50807019--50807056 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
50807009 GCCCGAGTAG
50807019 GAGCCCCAGCCA
1 GAGCCCCAGCCA
*
50807031 AAGCCCCAGCCA
1 GAGCCCCAGCCA
*
50807043 GAGCCCTAGCCA
1 GAGCCCCAGCCA
50807055 GA
1 GA
50807057 TCCGGAACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.29, C:0.45, G:0.24, T:0.03
Consensus pattern (12 bp):
GAGCCCCAGCCA
Found at i:50807467 original size:14 final size:14
Alignment explanation
Indices: 50807448--50807480 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
50807438 TTTTTGTATA
50807448 AATTTAATTATTCT
1 AATTTAATTATTCT
50807462 AATTTAATTATTCT
1 AATTTAATTATTCT
50807476 AATTT
1 AATTT
50807481 TAGTTATGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (14 bp):
AATTTAATTATTCT
Found at i:50810377 original size:13 final size:13
Alignment explanation
Indices: 50810359--50810383 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50810349 GTCAAAAACT
50810359 AAAAAAAATCTCA
1 AAAAAAAATCTCA
50810372 AAAAAAAATCTC
1 AAAAAAAATCTC
50810384 CAACAGTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAAAAAATCTCA
Found at i:50810605 original size:40 final size:40
Alignment explanation
Indices: 50810538--50810637 Score: 103
Period size: 40 Copynumber: 2.5 Consensus size: 40
50810528 AATAGTTTTA
* * * *
50810538 TACTCAAAATAACACTAACTAACAATAATAAT-TAGGGTTT
1 TACTAAAAATAATACTAAC-CATAATAATAATCTAGGGTTT
**
50810578 TACTAAAAATAATAACTAACCATAATAATAATGCTAGTTTTT
1 TACTAAAAATAAT-ACTAACCATAATAATAAT-CTAGGGTTT
*
50810620 TACTAACAATAATACTAA
1 TACTAAAAATAATACTAA
50810638 GTAACATCTA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
40 21 0.42
41 11 0.22
42 18 0.36
ACGTcount: A:0.49, C:0.14, G:0.05, T:0.32
Consensus pattern (40 bp):
TACTAAAAATAATACTAACCATAATAATAATCTAGGGTTT
Found at i:50810947 original size:27 final size:26
Alignment explanation
Indices: 50810908--50811005 Score: 151
Period size: 27 Copynumber: 3.7 Consensus size: 26
50810898 ATAACAAAAG
50810908 TGGTGCCGCCTATGGGAAAGGCACCT
1 TGGTGCCGCCTATGGGAAAGGCACCT
50810934 TGGGTGCCGCCTATGGGAAAGGCACCAT
1 T-GGTGCCGCCTATGGGAAAGGCACC-T
*
50810962 CGGTGCCGCCTATGGGAAAGGCACCT
1 TGGTGCCGCCTATGGGAAAGGCACCT
*
50810988 CTGGTGCCGCCCATGGGA
1 -TGGTGCCGCCTATGGGA
50811006 TACCCTCCTC
Statistics
Matches: 66, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
26 2 0.03
27 63 0.95
28 1 0.02
ACGTcount: A:0.18, C:0.29, G:0.36, T:0.17
Consensus pattern (26 bp):
TGGTGCCGCCTATGGGAAAGGCACCT
Found at i:50817117 original size:21 final size:19
Alignment explanation
Indices: 50817081--50817151 Score: 115
Period size: 19 Copynumber: 3.6 Consensus size: 19
50817071 AATCATATCT
50817081 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
50817100 TCCAAGATTGCACATATCATA
1 TCTAAGATTG--CATATCATA
50817121 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
50817140 TCTAAGATTGCA
1 TCTAAGATTGCA
50817152 GATCTTCAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
19 30 0.62
21 18 0.38
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:50817129 original size:40 final size:38
Alignment explanation
Indices: 50817074--50817151 Score: 129
Period size: 40 Copynumber: 2.0 Consensus size: 38
50817064 ATTACAAAAT
50817074 CATATCTTCTAAGATTGCATATCATATCCAAGATTGCA
1 CATATCTTCTAAGATTGCATATCATATCCAAGATTGCA
*
50817112 CATATCATATCTAAGATTGCATATCATATCTAAGATTGCA
1 CATATC-T-TCTAAGATTGCATATCATATCCAAGATTGCA
50817152 GATCTTCAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
38 6 0.16
39 1 0.03
40 30 0.81
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.35
Consensus pattern (38 bp):
CATATCTTCTAAGATTGCATATCATATCCAAGATTGCA
Found at i:50817520 original size:44 final size:44
Alignment explanation
Indices: 50817471--50818174 Score: 123
Period size: 44 Copynumber: 16.0 Consensus size: 44
50817461 ACTGTAACCA
*
50817471 CAGGGAGGTAAAATCCACCATCTTCGATCTACTCCACTACTGCT
1 CAGGGAGGTAAAATCCACCATCTTCAATCTACTCCACTACTGCT
* * * * * * ** *
50817515 TAGGGAGATAAGATCTGA-AATCTTCAATCTATTCCACTGTTGCC
1 CAGGGAGGTAAAATC-CACCATCTTCAATCTACTCCACTACTGCT
* * * *** * *
50817559 CAGGGAAGTAGAAT-TACTGGCTTCAATGTACTCCACTGTAAC--CA
1 CAGGGAGGTAAAATCCACCATCTTCAATCTACTCCAC--T-ACTGCT
* * *
50817603 CAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCT
1 CAGGGAGGTAAAATCCACCATCTTCAATCTACTCCACTACTGCT
* * * * * * ** *
50817647 TAGGGAGATAAGATCTGA-AATCTTCAATCTATTCCACTGTTGCC
1 CAGGGAGGTAAAATC-CACCATCTTCAATCTACTCCACTACTGCT
* * * * * *** * *
50817691 CAGCGAAGCAGAAT-TACTGGCTTCAATGTACTCCACAATAAC--CA
1 CAGGGAGGTAAAATCCACCATCTTCAATCTACTCCAC--T-ACTGCT
* *
50817735 CAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCT
1 CAGGGAGGTAAAATCCACCATCTTCAATCTACTCCACTACTGCT
* ** * * * * * **
50817779 TAAAGAGATAAGATCTGA-AATCTTCAATCTATTCCACTGTTG-T
1 CAGGGAGGTAAAATC-CACCATCTTCAATCTACTCCACTACTGCT
* * * *** * * *
50817822 CCAGGGAAGTAGAAT-TACTGGCTTCAATGTACTCCACTA-TAACCA
1 -CAGGGAGGTAAAATCCACCATCTTCAATCTACTCCACTACT--GCT
* * * *
50817867 CAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCT
1 CAGGGAGGTAAAATCCACCATCTTCAATCTACTCCACTACTGCT
* * * * * * **
50817911 TAGGGAGATAAGATCTGA-AATCTTCAATCTATTCCACTGTTG-T
1 CAGGGAGGTAAAATC-CACCATCTTCAATCTACTCCACTACTGCT
* * * *** * * *
50817954 CCAGGGAAGTAGAAT-TACTGGCTTCAATGTACTCCACTA-TAACCA
1 -CAGGGAGGTAAAATCCACCATCTTCAATCTACTCCACTACT--GCT
** * *
50817999 CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCT
1 CAGGGAGGTAAAATCCACCATCTTCAATCTACTCCACTACTGCT
* * * * * ** * * *
50818043 TAGAGAGATAAGATCTAAAATCTTCAATCGATTCCACTATTG-T
1 CAGGGAGGTAAAATCCACCATCTTCAATCTACTCCACTACTGCT
* * * *** * * *
50818086 CCAGGGAAGTAGAAT-TACTGGCTTCAATGTACTCCACTA-TAACCA
1 -CAGGGAGGTAAAATCCACCATCTTCAATCTACTCCACTACT--GCT
* * * *
50818131 CAGGGAGGTAAAATCCGCCATCTTCGATTTGCTCCACTACTGCT
1 CAGGGAGGTAAAATCCACCATCTTCAATCTACTCCACTACTGCT
50818175 TAAGGAGATA
Statistics
Matches: 430, Mismatches: 192, Indels: 76
0.62 0.28 0.11
Matches are distributed among these distances:
42 11 0.03
43 80 0.19
44 254 0.59
45 82 0.19
46 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (44 bp):
CAGGGAGGTAAAATCCACCATCTTCAATCTACTCCACTACTGCT
Found at i:50817624 original size:132 final size:132
Alignment explanation
Indices: 50817384--50818211 Score: 1381
Period size: 132 Copynumber: 6.3 Consensus size: 132
50817374 CTGCAACTGC
* * * * * * *
50817384 AGGGAGATAAGAT-TTACAATCTTCAACCTATTCCACTGCTGACCAGGG-AGATAGGATTATTGA
1 AGGGAGATAAGATCTGA-AATCTTCAATCTATTCCACTGTTGTCCAGGGAAG-TAGAATTACTGG
* * *
50817447 CTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTACTCCACTACT
64 CTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACT
50817512 GCTT
129 GCTT
*
50817516 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCT
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCT
*
50817581 TCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGC
66 TCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGC
50817646 TT
131 TT
* * *
50817648 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGCGAAGCAGAATTACTGGCT
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCT
* *
50817713 TCAATGTACTCCACAATAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGC
66 TCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGC
50817778 TT
131 TT
**
50817780 AAAGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCT
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCT
*
50817845 TCAATGTACTCCACTATAACCACAAGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGC
66 TCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGC
50817910 TT
131 TT
50817912 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCT
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCT
*
50817977 TCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGC
66 TCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGC
50818042 TT
131 TT
* * * *
50818044 AGAGAGATAAGATCTAAAATCTTCAATCGATTCCACTATTGTCCAGGGAAGTAGAATTACTGGCT
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCT
*
50818109 TCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATTTGCTCCACTACTGC
66 TCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGC
50818174 TT
131 TT
*
50818176 AAGGAGATAAGATCTGAAATCTTCAATCTATTCCAC
1 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCAC
50818212 CATCTTCAAT
Statistics
Matches: 658, Mismatches: 36, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
132 654 0.99
133 4 0.01
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (132 bp):
AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCT
TCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGC
TT
Found at i:50821027 original size:22 final size:22
Alignment explanation
Indices: 50820967--50821036 Score: 113
Period size: 22 Copynumber: 3.2 Consensus size: 22
50820957 TAGACTATTT
* **
50820967 TGAGAGCTTAGTACGTGAAACA
1 TGAGAGCTTAGTACGTTAGCCA
50820989 TGAGAGCTTAGTACGTTAGCCA
1 TGAGAGCTTAGTACGTTAGCCA
50821011 TGAGAGCTTAGTACGTTAGCCA
1 TGAGAGCTTAGTACGTTAGCCA
50821033 TGAG
1 TGAG
50821037 GGTTTAATTC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.26
Consensus pattern (22 bp):
TGAGAGCTTAGTACGTTAGCCA
Found at i:50823774 original size:19 final size:19
Alignment explanation
Indices: 50823747--50823840 Score: 161
Period size: 19 Copynumber: 4.8 Consensus size: 19
50823737 AATCATATCT
50823747 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
50823766 TCCAAGATTGCACATATCATA
1 TCTAAGATTG--CATATCATA
50823787 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
50823806 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
50823825 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
50823841 CTCAAAAATT
Statistics
Matches: 71, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
19 53 0.75
21 18 0.25
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:50838802 original size:12 final size:12
Alignment explanation
Indices: 50838785--50838809 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50838775 GTAAAATGAA
50838785 AAATAATTTAAT
1 AAATAATTTAAT
50838797 AAATAATTTAAT
1 AAATAATTTAAT
50838809 A
1 A
50838810 TGAAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AAATAATTTAAT
Found at i:50843056 original size:68 final size:68
Alignment explanation
Indices: 50842915--50843062 Score: 163
Period size: 68 Copynumber: 2.2 Consensus size: 68
50842905 TGAGTTAGCA
* * * * * * * *
50842915 GATTTAATATCACAACTCCTAAACAGTTTGATGACCTATGTTCACAGTTGATATTATAAAGTTTA
1 GATTTAATATCGCAACTCCTAAACAGCTCGATGACCTACGATCACAGGTAATATTATAAAGGTTA
50842980 GTT
66 GTT
* * * * *
50842983 GATTTAAGATCGCAACTCCTAAACAGCTCGATGACTTACGATCATAGGTAATATTGTTAAGGTTA
1 GATTTAATATCGCAACTCCTAAACAGCTCGATGACCTACGATCACAGGTAATATTATAAAGGTTA
50843048 GATT
66 G-TT
50843052 -ATTTAATATCG
1 GATTTAATATCG
50843063 TAACCTAAGT
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
68 63 0.97
69 2 0.03
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.36
Consensus pattern (68 bp):
GATTTAATATCGCAACTCCTAAACAGCTCGATGACCTACGATCACAGGTAATATTATAAAGGTTA
GTT
Found at i:50847026 original size:134 final size:134
Alignment explanation
Indices: 50846786--50847052 Score: 446
Period size: 134 Copynumber: 2.0 Consensus size: 134
50846776 CTTACACATC
* * * *
50846786 TTATTGATTATAATGAAAGCATCTTCTTCTAATATGACATTTTGATGTCTCAAATTTACTGCAAT
1 TTATTCATTATAATGAAAGCATCTTCTTCTAATATGACATTTTGATGACCCAAATCTACTGCAAT
* *
50846851 CTTCAAAGCATGGAGACATGCAATGGTTTCAATCAGCATATGAGTAGAGAAC-AAAAAGAAGAAA
66 CTTCAAAGCATGGAGACATGCAATGGTTTCAATCACCATATGACTAGAGAACTAAAAA-AAGAAA
50846915 AGTTT
130 AGTTT
50846920 TTATTCATTATAATGAAAGCATCTTCTTCTAATATGACATTTTGATGACCCAAATCTACTGCAAT
1 TTATTCATTATAATGAAAGCATCTTCTTCTAATATGACATTTTGATGACCCAAATCTACTGCAAT
* *
50846985 CTTCAAAGTATGGAGATATGCAATGGTTTCAATCACCATATGACTAGAGAACTAAAAAAAGAAAA
66 CTTCAAAGCATGGAGACATGCAATGGTTTCAATCACCATATGACTAGAGAACTAAAAAAAGAAAA
50847050 GTT
131 GTT
50847053 ATGTTGAGAT
Statistics
Matches: 124, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
134 119 0.96
135 5 0.04
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (134 bp):
TTATTCATTATAATGAAAGCATCTTCTTCTAATATGACATTTTGATGACCCAAATCTACTGCAAT
CTTCAAAGCATGGAGACATGCAATGGTTTCAATCACCATATGACTAGAGAACTAAAAAAAGAAAA
GTTT
Found at i:50854091 original size:6 final size:6
Alignment explanation
Indices: 50854080--50854124 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
50854070 AACCTGACAG
* *
50854080 AAAATA AAAATA AAATTA AAAATTA AAAATTA AAAATT AAAATA A
1 AAAATA AAAATA AAAATA AAAA-TA AAAA-TA AAAATA AAAATA A
50854125 TTAGACAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
6 21 0.62
7 13 0.38
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (6 bp):
AAAATA
Found at i:50854141 original size:6 final size:7
Alignment explanation
Indices: 50854080--50854121 Score: 63
Period size: 7 Copynumber: 6.4 Consensus size: 7
50854070 AACCTGACAG
50854080 AAAA-TA
1 AAAATTA
50854086 AAAA-T-
1 AAAATTA
50854091 AAAATTA
1 AAAATTA
50854098 AAAATTA
1 AAAATTA
50854105 AAAATTA
1 AAAATTA
50854112 AAAATTA
1 AAAATTA
50854119 AAA
1 AAA
50854122 TAATTAGACA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
5 4 0.12
6 6 0.18
7 24 0.71
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAATTA
Found at i:50854501 original size:17 final size:19
Alignment explanation
Indices: 50854464--50854503 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
50854454 GATGAACCGT
50854464 AAAATAAGTTAAAGGAATG
1 AAAATAAGTTAAAGGAATG
*
50854483 AAAATAAG-TAAA-TAATG
1 AAAATAAGTTAAAGGAATG
50854500 AAAA
1 AAAA
50854504 GAAAAAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 4 0.20
19 8 0.40
ACGTcount: A:0.65, C:0.00, G:0.15, T:0.20
Consensus pattern (19 bp):
AAAATAAGTTAAAGGAATG
Found at i:50856340 original size:23 final size:23
Alignment explanation
Indices: 50856313--50856361 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
50856303 TCGAGAGATA
*
50856313 GTCAAATTGCATAATGTTCCTGT
1 GTCAAATTGCATAATGTACCTGT
*
50856336 GTCAAATTGCATAGTGTACCTGT
1 GTCAAATTGCATAATGTACCTGT
50856359 GTC
1 GTC
50856362 TATTATCTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.37
Consensus pattern (23 bp):
GTCAAATTGCATAATGTACCTGT
Found at i:50857742 original size:22 final size:23
Alignment explanation
Indices: 50857699--50857744 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
50857689 AATGGCTTAT
*
50857699 AATTTTATAAATACTAAGTTATAA
1 AATTTTATAAATAC-AAATTATAA
*
50857723 AATTTTATAATTA-AAATTATAA
1 AATTTTATAAATACAAATTATAA
50857745 TATGGTAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
24 12 0.60
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
AATTTTATAAATACAAATTATAA
Found at i:50865088 original size:41 final size:41
Alignment explanation
Indices: 50865031--50865113 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
50865021 AACACACCCA
50865031 AACTTATTTTGAACTCAAGCTCATACATTTTTCCTTTTTGG
1 AACTTATTTTGAACTCAAGCTCATACATTTTTCCTTTTTGG
50865072 AACTTATTTTGAACTCAAGCTCATACATTTTTCCTTTTTGG
1 AACTTATTTTGAACTCAAGCTCATACATTTTTCCTTTTTGG
50865113 A
1 A
50865114 GACTGAGAGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.25, C:0.19, G:0.10, T:0.46
Consensus pattern (41 bp):
AACTTATTTTGAACTCAAGCTCATACATTTTTCCTTTTTGG
Found at i:50875993 original size:20 final size:20
Alignment explanation
Indices: 50875968--50876022 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
50875958 CCGATTACAA
50875968 AAGCCCAAAACCCAACACAG
1 AAGCCCAAAACCCAACACAG
*
50875988 AAGCCCAAAGCCCAACACAG
1 AAGCCCAAAACCCAACACAG
50876008 AAGCCCAAAACCCAA
1 AAGCCCAAAACCCAA
50876023 GACTTTCCCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.49, C:0.40, G:0.11, T:0.00
Consensus pattern (20 bp):
AAGCCCAAAACCCAACACAG
Found at i:50890052 original size:44 final size:44
Alignment explanation
Indices: 50889990--50890109 Score: 111
Period size: 44 Copynumber: 2.8 Consensus size: 44
50889980 TAGCAGGTCT
**
50889990 TATCTCCCT-AAGCAGTAGTGGAGAAGA-CAGAAGAAACTA-ATCC
1 TATCTCCCTAAAGTTGTAGTGGAGAAGATCA-AAGAAA-TAGATCC
* ** * *
50890033 TATCTCCCTAAAGTTGTAGTAGAGCGGATTAAAGTAATAGATCC
1 TATCTCCCTAAAGTTGTAGTGGAGAAGATCAAAGAAATAGATCC
* **
50890077 TATCTCCCTAAAGTTGCAGTGGAGCTGATCAAA
1 TATCTCCCTAAAGTTGTAGTGGAGAAGATCAAA
50890110 AGGATCTCAT
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
43 11 0.17
44 51 0.81
45 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (44 bp):
TATCTCCCTAAAGTTGTAGTGGAGAAGATCAAAGAAATAGATCC
Found at i:50890604 original size:20 final size:20
Alignment explanation
Indices: 50890579--50890637 Score: 82
Period size: 20 Copynumber: 3.0 Consensus size: 20
50890569 TAGCCCGATT
50890579 ACAAAAGCCCAAAACCCAAC
1 ACAAAAGCCCAAAACCCAAC
* *
50890599 ACAAAATCCCAAAGCCCAAC
1 ACAAAAGCCCAAAACCCAAC
* *
50890619 ACAGAAGCCCAACACCCAA
1 ACAAAAGCCCAAAACCCAA
50890638 GACTTTCCCC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.51, C:0.41, G:0.07, T:0.02
Consensus pattern (20 bp):
ACAAAAGCCCAAAACCCAAC
Found at i:50897954 original size:15 final size:15
Alignment explanation
Indices: 50897934--50897964 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
50897924 ATCAGCTCGG
50897934 TTGGATGACATTTTA
1 TTGGATGACATTTTA
*
50897949 TTGGATGATATTTTA
1 TTGGATGACATTTTA
50897964 T
1 T
50897965 CTATATGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.03, G:0.19, T:0.52
Consensus pattern (15 bp):
TTGGATGACATTTTA
Found at i:50898449 original size:21 final size:21
Alignment explanation
Indices: 50898423--50898466 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
50898413 TAAATATTGA
*
50898423 GTTATCGTACCCATAGGGACT
1 GTTATCGTACCCACAGGGACT
50898444 GTTATCGTACCCACAGGGACT
1 GTTATCGTACCCACAGGGACT
50898465 GT
1 GT
50898467 GAAAAGAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (21 bp):
GTTATCGTACCCACAGGGACT
Found at i:50909159 original size:20 final size:19
Alignment explanation
Indices: 50909134--50909178 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
50909124 TGATTCTAAC
50909134 TAATTTTAAATAATTTCATT
1 TAATTTTAAAT-ATTTCATT
* * *
50909154 TAATTTTCAATTTTTCTTT
1 TAATTTTAAATATTTCATT
50909173 TAATTT
1 TAATTT
50909179 GGACTTAGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (19 bp):
TAATTTTAAATATTTCATT
Found at i:50917447 original size:12 final size:13
Alignment explanation
Indices: 50917422--50917452 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
50917412 TGCAAATGTG
50917422 TCATTTCTCATTT
1 TCATTTCTCATTT
50917435 TCATTTC-CATTT
1 TCATTTCTCATTT
50917447 TCATTT
1 TCATTT
50917453 TAAGAAACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.16, C:0.23, G:0.00, T:0.61
Consensus pattern (13 bp):
TCATTTCTCATTT
Found at i:50923877 original size:40 final size:40
Alignment explanation
Indices: 50923817--50923893 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
50923807 GTCATGCACA
* * *
50923817 ATGTATCAAATGGTCGCAACATCTTATACATCATTAATCT
1 ATGTACCAAATGGTCACAACATCTCATACATCATTAATCT
50923857 ATGTACCAAATGGTCACAACATCTCATACATCATTAA
1 ATGTACCAAATGGTCACAACATCTCATACATCATTAA
50923894 ACTCAAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (40 bp):
ATGTACCAAATGGTCACAACATCTCATACATCATTAATCT
Found at i:50924283 original size:11 final size:10
Alignment explanation
Indices: 50924225--50924286 Score: 51
Period size: 9 Copynumber: 6.5 Consensus size: 10
50924215 AATTTATAAT
*
50924225 AAAATCATT-
1 AAAATTATTA
*
50924234 AAAACTATTA
1 AAAATTATTA
50924244 AAAA--ATTA
1 AAAATTATTA
*
50924252 AAATTTA-TA
1 AAAATTATTA
*
50924261 AGAATTATTA
1 AAAATTATTA
50924271 AAAATTAATTA
1 AAAATT-ATTA
50924282 AAAAT
1 AAAAT
50924287 CATAAAATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
8 7 0.17
9 14 0.33
10 12 0.29
11 9 0.21
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (10 bp):
AAAATTATTA
Found at i:50925079 original size:7 final size:7
Alignment explanation
Indices: 50925067--50925091 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
50925057 CTTGTGCTCT
50925067 TTTAAAA
1 TTTAAAA
50925074 TTTAAAA
1 TTTAAAA
50925081 TTTAAAA
1 TTTAAAA
50925088 TTTA
1 TTTA
50925092 GTCCTTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
TTTAAAA
Found at i:50928249 original size:6 final size:7
Alignment explanation
Indices: 50928202--50928232 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
50928192 TTAAAAAATC
50928202 TTTTTAT
1 TTTTTAT
50928209 TTTTTAT
1 TTTTTAT
50928216 TTTTTAT
1 TTTTTAT
*
50928223 TTTTAAT
1 TTTTTAT
50928230 TTT
1 TTT
50928233 AAAGAGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTAT
Found at i:50928277 original size:18 final size:18
Alignment explanation
Indices: 50928256--50928290 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50928246 TTTACTAAAA
50928256 TTATATTTTTTAAAATAT
1 TTATATTTTTTAAAATAT
* *
50928274 TTATGTTTTTTTAAATA
1 TTATATTTTTTAAAATA
50928291 AGAAAAATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (18 bp):
TTATATTTTTTAAAATAT
Found at i:50928553 original size:25 final size:25
Alignment explanation
Indices: 50928524--50928579 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
50928514 TATTTGCTTT
*
50928524 GAACCGGTTATACTGGTTATTCTAG
1 GAACCAGTTATACTGGTTATTCTAG
*
50928549 GAACCAGTTGTACTGGTTATTCTAG
1 GAACCAGTTATACTGGTTATTCTAG
50928574 GAACCA
1 GAACCA
50928580 ATTGGTTAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (25 bp):
GAACCAGTTATACTGGTTATTCTAG
Found at i:50931946 original size:2 final size:2
Alignment explanation
Indices: 50931939--50931982 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
50931929 CCAGGTTTGT
50931939 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
50931981 TC
1 TC
50931983 ATCTAGTGTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:50938218 original size:53 final size:52
Alignment explanation
Indices: 50938137--50938291 Score: 229
Period size: 53 Copynumber: 2.9 Consensus size: 52
50938127 ACAGTAGATC
* *
50938137 AAATACCATATCATGTAAGACCGTAACTGGTGGGTTATGACATAATATGAAA
1 AAATACCATATCGTGTAAGACCGTAACTGGTGGGTTATGACATCATATGAAA
*
50938189 AGAATACCATATCGTGTAAGACCGTAACTGGTTGGTTATGACATCATATGGAAA
1 A-AATACCATATCGTGTAAGACCGTAACTGGTGGGTTATGACATCATAT-GAAA
* * * *
50938243 AAAGACCATACCGTGTAAGACCGTAACTAGTGGGTTATGGCATCATATG
1 AAATACCATATCGTGTAAGACCGTAACTGGTGGGTTATGACATCATATG
50938292 GGAAAATTTA
Statistics
Matches: 93, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
52 2 0.02
53 86 0.92
54 5 0.05
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.26
Consensus pattern (52 bp):
AAATACCATATCGTGTAAGACCGTAACTGGTGGGTTATGACATCATATGAAA
Found at i:50938480 original size:29 final size:29
Alignment explanation
Indices: 50938444--50938538 Score: 79
Period size: 29 Copynumber: 3.3 Consensus size: 29
50938434 GTTTAAGGAT
50938444 GCCTTTGTGCAAAAATTTTGGAAAGGTAA
1 GCCTTTGTGCAAAAATTTTGGAAAGGTAA
** * *
50938473 GCCTTTGTGGCAAACCTATT--AAAGGAAA
1 GCCTTTGT-GCAAAAATTTTGGAAAGGTAA
* * * *
50938501 ACCTTTGAGGC-AAAACTCTGGAAAGGTAA
1 GCCTTTG-TGCAAAAATTTTGGAAAGGTAA
50938530 GCCTTTGTG
1 GCCTTTGTG
50938539 GTGAACCTAT
Statistics
Matches: 48, Mismatches: 14, Indels: 9
0.68 0.20 0.13
Matches are distributed among these distances:
27 3 0.06
28 16 0.33
29 21 0.44
30 8 0.17
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (29 bp):
GCCTTTGTGCAAAAATTTTGGAAAGGTAA
Found at i:50938505 original size:28 final size:28
Alignment explanation
Indices: 50938465--50938709 Score: 135
Period size: 28 Copynumber: 8.6 Consensus size: 28
50938455 AAAATTTTGG
* *
50938465 AAAGGTAAGCCTTTGTGGCAAACCTATT
1 AAAGGAAAGCCTTTGTGGCAAACCTCTT
* * * *
50938493 AAAGGAAAACCTTTGAGGCAAAACTCTGG
1 AAAGGAAAGCCTTTGTGGCAAACCTCT-T
* ** *
50938522 AAAGGTAAGCCTTTGTGGTGAACCTATT
1 AAAGGAAAGCCTTTGTGGCAAACCTCTT
* * ** *
50938550 AAATGACAA-CCTTTGTGACAAAAATCTGG
1 AAAGGA-AAGCCTTTGTGGCAAACCTCT-T
* *
50938579 AAAGGTAAGCCTTTATGGCAAACCTCTT
1 AAAGGAAAGCCTTTGTGGCAAACCTCTT
*
50938607 AAA-GAACA-CCTTTGTGGCAAATCT-TT
1 AAAGGAA-AGCCTTTGTGGCAAACCTCTT
**
50938633 GAAAGGAAATGCCTTTGTGG--TGCTCTCTAT
1 -AAAGGAAA-GCCTTTGTGGCAAAC-CTCT-T
* * *
50938663 CCAAGGAAAGCCTCTGTGGCAAA-CTCTAG
1 -AAAGGAAAGCCTTTGTGGCAAACCTCT-T
*
50938692 AAAGGAAAGCCTCTGTGG
1 AAAGGAAAGCCTTTGTGG
50938710 AAATCTCCGT
Statistics
Matches: 160, Mismatches: 43, Indels: 28
0.69 0.19 0.12
Matches are distributed among these distances:
26 2 0.01
27 20 0.12
28 66 0.41
29 64 0.40
30 8 0.05
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (28 bp):
AAAGGAAAGCCTTTGTGGCAAACCTCTT
Found at i:50938506 original size:57 final size:55
Alignment explanation
Indices: 50938445--50938652 Score: 222
Period size: 57 Copynumber: 3.7 Consensus size: 55
50938435 TTTAAGGATG
*
50938445 CCTTTGTGCAAAAATTTTGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAAGGAAAA
1 CCTTTGTGC-AAAATTCTGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAA-GAAAA
* * ** *
50938502 CCTTTGAGGCAAAACTCTGGAAAGGTAAGCCTTTGTGGTGAACCTATTAAATGACAA
1 CCTTTG-TGCAAAATTCTGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAA-GAAAA
* * * *
50938559 CCTTTGTGACAAAAATCTGGAAAGGTAAGCCTTTATGGCAAACCTCTTAAAGAACA
1 CCTTTGTG-CAAAATTCTGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAAGAAAA
* *
50938615 CCTTTGTGGC-AAA-TCTTTGAAAGGAAATGCCTTTGTGG
1 CCTTTGT-GCAAAATTC-TGGAAAGGTAA-GCCTTTGTGG
50938653 TGCTCTCTAT
Statistics
Matches: 128, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
54 2 0.02
55 12 0.09
56 21 0.16
57 91 0.71
58 2 0.02
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.28
Consensus pattern (55 bp):
CCTTTGTGCAAAATTCTGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAAGAAAA
Found at i:50938584 original size:114 final size:113
Alignment explanation
Indices: 50938445--50938654 Score: 307
Period size: 114 Copynumber: 1.8 Consensus size: 113
50938435 TTTAAGGATG
* *
50938445 CCTTTGTGCAAAAATTTTGGAAAGGTAAGCCTTTGTGGCAAACCTATTAAAGGAAAACCTTTGAG
1 CCTTTGTGCAAAAATTCTGGAAAGGTAAGCCTTTATGGCAAACCTATTAAA-GAAAACCTTTGAG
*
50938510 GCAAAACTCTGGAAAGGTAA-GCCTTTGTGGTGAACCTATTAAATGACAA
65 GCAAAACT-TGGAAAGGAAATGCCTTTGTGGTGAACCTATTAAATGACAA
* * *
50938559 CCTTTGTGACAAAAA-TCTGGAAAGGTAAGCCTTTATGGCAAACCTCTTAAAGAACACCTTTGTG
1 CCTTTGTG-CAAAAATTCTGGAAAGGTAAGCCTTTATGGCAAACCTATTAAAGAAAACCTTTGAG
* *
50938623 GCAAATCTTTGAAAGGAAATGCCTTTGTGGTG
65 GCAAAACTTGGAAAGGAAATGCCTTTGTGGTG
50938655 CTCTCTATCC
Statistics
Matches: 86, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
112 9 0.10
113 30 0.35
114 41 0.48
115 6 0.07
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (113 bp):
CCTTTGTGCAAAAATTCTGGAAAGGTAAGCCTTTATGGCAAACCTATTAAAGAAAACCTTTGAGG
CAAAACTTGGAAAGGAAATGCCTTTGTGGTGAACCTATTAAATGACAA
Found at i:50943177 original size:138 final size:136
Alignment explanation
Indices: 50942893--50943143 Score: 412
Period size: 138 Copynumber: 1.8 Consensus size: 136
50942883 GAAAATTAAT
*
50942893 TATTTCCTAGACAGTATTACCTCTCGACATCTACTGCCTAACTAATCAACCAGTACACGCTTACC
1 TATTACCTAGACAGTATTACCTCTCGACATCTACTGCCTAACTAATCAACCAGTACACGCTTACC
**
50942958 TCTAGGCCTCACTTTCTGACTGGGATAAATACACGATTTACTCAGTACTTAGGGTTTCTCTGAGA
66 TCTAGGCCTCACTTTCTGACTGGGATAAATACACGATTTACTCAGTACTTAGCCTTTCTCTGAG-
**
50943023 AAATTATT
130 -AATTACG
*
50943031 TATTACCTAGACAGTATTACCTCTCGGCATCTACTGCCTAACTAATCAACCAGTACACGCTTACC
1 TATTACCTAGACAGTATTACCTCTCGACATCTACTGCCTAACTAATCAACCAGTACACGCTTACC
*
50943096 TCTAGGCTTCACTTTCCTGACTGGGATAAATACACGATTTACTCAGTA
66 TCTAGGCCTCACTTT-CTGACTGGGATAAATACACGATTTACTCAGTA
50943144 TCCTTGTATC
Statistics
Matches: 109, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
138 77 0.71
139 32 0.29
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (136 bp):
TATTACCTAGACAGTATTACCTCTCGACATCTACTGCCTAACTAATCAACCAGTACACGCTTACC
TCTAGGCCTCACTTTCTGACTGGGATAAATACACGATTTACTCAGTACTTAGCCTTTCTCTGAGA
ATTACG
Found at i:50947003 original size:16 final size:16
Alignment explanation
Indices: 50946984--50947021 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
50946974 CAAGAAAATT
*
50946984 AATTTTAAATAAAAAA
1 AATTTAAAATAAAAAA
*
50947000 AATTAAAAATAAAAAA
1 AATTTAAAATAAAAAA
50947016 AATTTA
1 AATTTA
50947022 TGCATTTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AATTTAAAATAAAAAA
Found at i:50951489 original size:4 final size:4
Alignment explanation
Indices: 50951480--50951541 Score: 124
Period size: 4 Copynumber: 15.5 Consensus size: 4
50951470 CATCTATATC
50951480 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
50951528 TACA TACA TACA TA
1 TACA TACA TACA TA
50951542 TATTACTGTA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 58 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
TACA
Found at i:50951563 original size:10 final size:10
Alignment explanation
Indices: 50951548--50951572 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
50951538 CATATATTAC
50951548 TGTACTAAAT
1 TGTACTAAAT
50951558 TGTACTAAAT
1 TGTACTAAAT
50951568 TGTAC
1 TGTAC
50951573 CACATCATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (10 bp):
TGTACTAAAT
Found at i:50954350 original size:27 final size:27
Alignment explanation
Indices: 50954320--50954376 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
50954310 TTCAAAGATA
50954320 ACCTCAATCTCCCCTCCTATCATGTTC
1 ACCTCAATCTCCCCTCCTATCATGTTC
*
50954347 ACCTCAATCTCCCCTCCTGTCATGTTC
1 ACCTCAATCTCCCCTCCTATCATGTTC
50954374 ACC
1 ACC
50954377 ATGATTGTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.18, C:0.46, G:0.05, T:0.32
Consensus pattern (27 bp):
ACCTCAATCTCCCCTCCTATCATGTTC
Found at i:50959070 original size:41 final size:41
Alignment explanation
Indices: 50959025--50959128 Score: 181
Period size: 41 Copynumber: 2.5 Consensus size: 41
50959015 GACTTTAAGT
*
50959025 CTAGCAGGTTAAGAGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGAGCCGGTGATCTGAATCAGGTTATAAAC
*
50959066 CTAGCAGGCTAAGAGCCGGTGATTTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGAGCCGGTGATCTGAATCAGGTTATAAAC
*
50959107 CTAGCAGGCTAAGTGCCGGTGA
1 CTAGCAGGCTAAGAGCCGGTGA
50959129 ATATGTTAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (41 bp):
CTAGCAGGCTAAGAGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:50965964 original size:2 final size:2
Alignment explanation
Indices: 50965948--50965990 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
50965938 TTACGAATGG
* *
50965948 TA TA TA GA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
50965990 T
1 T
50965991 GCATTGTTTG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (2 bp):
TA
Found at i:50966324 original size:2 final size:2
Alignment explanation
Indices: 50966317--50966352 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
50966307 GAATAGGTGA
50966317 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
50966353 GTAAAATTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:50966649 original size:41 final size:41
Alignment explanation
Indices: 50966604--50966707 Score: 181
Period size: 41 Copynumber: 2.5 Consensus size: 41
50966594 GACTTTAAGT
*
50966604 CTAGCAGGTTAAGAGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGAGCCGGTGATCTGAATCAGGTTATAAAC
*
50966645 CTAGCAGGCTAAGAGCCGGTGATTTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGAGCCGGTGATCTGAATCAGGTTATAAAC
*
50966686 CTAGCAGGCTAAGTGCCGGTGA
1 CTAGCAGGCTAAGAGCCGGTGA
50966708 ATATGTTAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (41 bp):
CTAGCAGGCTAAGAGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:50966746 original size:2 final size:2
Alignment explanation
Indices: 50966739--50966798 Score: 68
Period size: 2 Copynumber: 29.5 Consensus size: 2
50966729 TATGCATTTG
* **
50966739 AT AT AT AT AT AT AT AA AT GAT -T AT GGG AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT -AT AT AT -AT AT AT AT AT AT AT AT AT
50966782 AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT A
50966799 ATGGATAATT
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
1 1 0.02
2 46 0.94
3 2 0.04
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (2 bp):
AT
Found at i:50974687 original size:2 final size:2
Alignment explanation
Indices: 50974680--50974706 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
50974670 ATTTATTTAG
50974680 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
50974707 GTGTGGAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:50977283 original size:101 final size:101
Alignment explanation
Indices: 50977165--50977503 Score: 588
Period size: 101 Copynumber: 3.4 Consensus size: 101
50977155 AAGTGATGGC
*
50977165 CACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCTGAATGATGGGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCTGAATGATGGGTCGCATGTGTAGTACT
*
50977230 ATGTGCAGGCTACTATGCGTACTGAATAGCTTCGAT
66 ATGTGCAGGCTACTATGCGTACCGAATAGCTTCGAT
* * * *
50977266 CATGTGTGTAGTACTATGTGTAGGCTACTACGTGTACTTGAATGATGGGTCCCATGTGTAGTACT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCTGAATGATGGGTCGCATGTGTAGTACT
*
50977331 ATGTGCAGGCTACTATGCGTACCGAATAGCTTTGAT
66 ATGTGCAGGCTACTATGCGTACCGAATAGCTTCGAT
* *
50977367 CACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATGGGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCTGAATGATGGGTCGCATGTGTAGTACT
*
50977432 ATGTGCAGGCTACTATGCGTACCGGATAGCTTCGAT
66 ATGTGCAGGCTACTATGCGTACCGAATAGCTTCGAT
50977468 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
50977504 TCGGATGGAA
Statistics
Matches: 222, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 222 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCTGAATGATGGGTCGCATGTGTAGTACT
ATGTGCAGGCTACTATGCGTACCGAATAGCTTCGAT
Found at i:50977509 original size:51 final size:50
Alignment explanation
Indices: 50977169--50977556 Score: 372
Period size: 51 Copynumber: 7.7 Consensus size: 50
50977159 GATGGCCACG
* * *
50977169 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCTGA-ATGATGGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATA-GATGGATCACA
* * * * * **
50977219 TGTGTAGTACTATGTGCAGGCTACTATGCGTACTGAATAGCTTCGATCATG
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAG-ATGGATCACA
* * ** * *
50977270 TGTGTAGTACTATGTGTAGGCTACTACGTGTACTTGA-ATGATGGGTCCCA
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATA-GATGGATCACA
* * * *
50977320 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATAGCTTTGATCACA
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAG-ATGGATCACA
* * *
50977371 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-ATGATGGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATA-GATGGATCACA
* * * *
50977421 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAG-ATGGATCACA
* * * *
50977472 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGAAATGG-TCACC
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAT--AGATGGATCACA
* *
50977523 TGAGTAGTACTATGTGTAGGCTACTATGTG-ACCG
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCG
50977557 AGTATCATTG
Statistics
Matches: 272, Mismatches: 56, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
50 117 0.43
51 152 0.56
52 2 0.01
53 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGATGGATCACA
Found at i:50977732 original size:75 final size:76
Alignment explanation
Indices: 50977574--50977739 Score: 255
Period size: 75 Copynumber: 2.2 Consensus size: 76
50977564 TTGATTATAA
* * * *
50977574 GGTGGTTGCTAAATGTTGATTCCACCGTATCTTTGAATATAAAGGGGGTTTCTAAGTGCTGATTC
1 GGTGGTTGCTAAGTGTTGATCCCACCGTATCTTTAAATATAAAGGGGGTTGCTAAGTGCTGATTC
*
50977639 CCCGAATCATT
66 CCCGAATCACT
*
50977650 GGTGGTTGCTAAGTGTTGATCCCACCGTATC-TTAAATGTGAAA-GGGGTTGCTAAGTGCTGATT
1 GGTGGTTGCTAAGTGTTGATCCCACCGTATCTTTAAATAT-AAAGGGGGTTGCTAAGTGCTGATT
50977713 CCCCGAATCACT
65 CCCCGAATCACT
50977725 GGTGGTTGCTAAGTG
1 GGTGGTTGCTAAGTG
50977740 CTGAATCCAC
Statistics
Matches: 83, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
75 51 0.61
76 32 0.39
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.33
Consensus pattern (76 bp):
GGTGGTTGCTAAGTGTTGATCCCACCGTATCTTTAAATATAAAGGGGGTTGCTAAGTGCTGATTC
CCCGAATCACT
Found at i:50978609 original size:49 final size:49
Alignment explanation
Indices: 50978515--50978613 Score: 119
Period size: 49 Copynumber: 2.0 Consensus size: 49
50978505 ATGAGTACTT
* * *
50978515 TCGGTAAGTGATATGTGATTCCGTATAAGACCATAGCTAGGCTATGGCA
1 TCGGTAAGTGATATGTGATTACATATAAGACAATAGCTAGGCTATGGCA
* * * *
50978564 TCGGTATGTGATATGTGATTACATGTAAGATAATAG-TTGGACTATGGCA
1 TCGGTAAGTGATATGTGATTACATATAAGACAATAGCTAGG-CTATGGCA
50978613 T
1 T
50978614 TGAGAAAACG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
48 3 0.07
49 39 0.93
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.32
Consensus pattern (49 bp):
TCGGTAAGTGATATGTGATTACATATAAGACAATAGCTAGGCTATGGCA
Found at i:50982115 original size:16 final size:18
Alignment explanation
Indices: 50982083--50982115 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50982073 GATGGCGTTA
50982083 TGGAAATATTAGTTAAGG
1 TGGAAATATTAGTTAAGG
50982101 TGGAAAT-TT-GTTAAG
1 TGGAAATATTAGTTAAG
50982116 TATGACTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.36, C:0.00, G:0.27, T:0.36
Consensus pattern (18 bp):
TGGAAATATTAGTTAAGG
Found at i:50983531 original size:26 final size:26
Alignment explanation
Indices: 50983501--50983557 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
50983491 GTATTTCACA
*
50983501 ATTTAATTATA-AATTATTCTATTTAT
1 ATTTAATTATATAAATATT-TATTTAT
*
50983527 ATTTATTTATATAAATATTTATTTAT
1 ATTTAATTATATAAATATTTATTTAT
50983553 ATTTA
1 ATTTA
50983558 TCTATTTTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 22 0.79
27 6 0.21
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTAATTATATAAATATTTATTTAT
Found at i:50983878 original size:84 final size:83
Alignment explanation
Indices: 50983789--50984026 Score: 350
Period size: 84 Copynumber: 2.8 Consensus size: 83
50983779 TATTAAAACT
50983789 AATAAAATCTGTTTTGGGATTTAGTTCCGCCGTTTAACAAGATTTTATTTGATTTTATTTTGTTT
1 AATAAAATCTGTTTTGGGATTTA-TTCCGCCGTTTAACAAGATTTTATTTGATTTTATTTTGTTT
*
50983854 CTAAATTAGAATTAAATTA
65 CCAAATTAGAATTAAATTA
* * *
50983873 AATAAAATCTATTTTGGGATTTATTCCAGTCGTTTAACAAGATTTTATTTTATTTTATTTTGTTT
1 AATAAAATCTGTTTTGGGATTTATTCC-GCCGTTTAACAAGATTTTATTTGATTTTATTTTGTTT
*
50983938 CCAAATTCGAATTAAATTA
65 CCAAATTAGAATTAAATTA
* * ** * *
50983957 AACAAAATCCGTTTCAGGATTTATTCCCGCCGTTTAACAAGATTTTATTCGATATTATTTTGTTT
1 AATAAAATCTGTTTTGGGATTTATT-CCGCCGTTTAACAAGATTTTATTTGATTTTATTTTGTTT
50984022 CCAAA
65 CCAAA
50984027 CAAAGACGTA
Statistics
Matches: 138, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
83 4 0.03
84 132 0.96
85 2 0.01
ACGTcount: A:0.31, C:0.12, G:0.11, T:0.46
Consensus pattern (83 bp):
AATAAAATCTGTTTTGGGATTTATTCCGCCGTTTAACAAGATTTTATTTGATTTTATTTTGTTTC
CAAATTAGAATTAAATTA
Found at i:50989057 original size:42 final size:43
Alignment explanation
Indices: 50989009--50989113 Score: 115
Period size: 43 Copynumber: 2.5 Consensus size: 43
50988999 TGTGATATCG
* * * *
50989009 TGTAAGACCATGTCTGGGACA-TCGGCATCG-TATATGATTTCT
1 TGTAAGACCATGTCTGGGACAGT-GACATCGTTATATGAATACA
* * *
50989051 TGTAAGACCCTGTTTGGGACAGTGACATCGTTATTTGAATACA
1 TGTAAGACCATGTCTGGGACAGTGACATCGTTATATGAATACA
*
50989094 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCATGTCTGGGAC
50989114 GTTGGCAATG
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
42 25 0.49
43 26 0.51
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGACATCGTTATATGAATACA
Found at i:50990811 original size:43 final size:42
Alignment explanation
Indices: 50990749--50990909 Score: 130
Period size: 43 Copynumber: 3.8 Consensus size: 42
50990739 CAAAAGCTCG
* *
50990749 TACAATACCAACGTCCCAGACGTGGTCTTACATATAATCAAA
1 TACAATGCCAATGTCCCAGACGTGGTCTTACATATAATCAAA
* * * *
50990791 TAACAATGCCATTGTCCCAGACAG-GGTCTTACATGTAATGATA
1 T-ACAATGCCAATGTCCCAGAC-GTGGTCTTACATATAATCAAA
* * * *
50990834 TACGATGCCAATGTCCCAAACATGGTCTTATACGTA-AATCTCAAA
1 TACAATGCCAATGTCCCAGACGTGGTC-T-TACATATAA--TCAAA
* * *
50990879 T-CGAGGCCAACGTCCCAGACGTGGTCTTACA
1 TACAATGCCAATGTCCCAGACGTGGTCTTACA
50990910 CGATGTCACA
Statistics
Matches: 93, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
42 25 0.27
43 38 0.41
44 26 0.28
45 4 0.04
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACGTGGTCTTACATATAATCAAA
Found at i:50990861 original size:42 final size:43
Alignment explanation
Indices: 50990750--50990863 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 43
50990740 AAAAGCTCGT
* * *
50990750 ACAATACCAACGTCCCAGACGTGGTCTTACATATAATCAAATA
1 ACAATGCCAATGTCCCAGACATGGTCTTACATATAATCAAATA
* * * * *
50990793 ACAATGCCATTGTCCCAGACAGGGTCTTACATGTAATGATAT-
1 ACAATGCCAATGTCCCAGACATGGTCTTACATATAATCAAATA
* *
50990835 ACGATGCCAATGTCCCAAACATGGTCTTA
1 ACAATGCCAATGTCCCAGACATGGTCTTA
50990864 TACGTAAATC
Statistics
Matches: 59, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
42 25 0.42
43 34 0.58
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (43 bp):
ACAATGCCAATGTCCCAGACATGGTCTTACATATAATCAAATA
Found at i:50992709 original size:17 final size:18
Alignment explanation
Indices: 50992679--50992713 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
50992669 TGCTTGATAT
*
50992679 ATGAATTAGTTTGATGTA
1 ATGAATTAGGTTGATGTA
50992697 ATGAATT-GGTTGATGTA
1 ATGAATTAGGTTGATGTA
50992714 TGTGTTTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.31, C:0.00, G:0.26, T:0.43
Consensus pattern (18 bp):
ATGAATTAGGTTGATGTA
Found at i:50995956 original size:3 final size:3
Alignment explanation
Indices: 50995948--50996009 Score: 115
Period size: 3 Copynumber: 20.7 Consensus size: 3
50995938 GCTTTGCTAT
*
50995948 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
50995996 TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TT
50996010 ACACTTAGAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:51018868 original size:27 final size:26
Alignment explanation
Indices: 51018838--51019196 Score: 340
Period size: 27 Copynumber: 13.3 Consensus size: 26
51018828 GTGAGGTCAA
* *
51018838 TAAAATGACCAAAATACCCTCAGAGGG
1 TAAAATGACCGAAATACCC-CATAGGG
*
51018865 TAAAATGACCGAAATACACCCATAGGA
1 TAAAATGACCGAAATAC-CCCATAGGG
* * * * *
51018892 TAAAACGATCTAAATACCCCCGTAAGG
1 TAAAATGACCGAAATA-CCCCATAGGG
* * * *
51018919 TAAAATAATCAAAATACTCTCATAGGG
1 TAAAATGACCGAAATAC-CCCATAGGG
*
51018946 TAAAATGATCGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCC-CATAGGG
*
51018973 TAAAATGATCGAAATACCCCTATAGGG
1 TAAAATGACCGAAATACCCC-ATAGGG
* *
51019000 TAAAATGATCGAAATACCCCTGTAGGG
1 TAAAATGACCGAAATACCCC-ATAGGG
51019027 TAAAATGACCGAAATACCCCTATAGGG
1 TAAAATGACCGAAATACCCC-ATAGGG
* *
51019054 TAAAATGACCAAAATACTCCCGTAGGG
1 TAAAATGACCGAAATAC-CCCATAGGG
* *
51019081 TAAAATAACCGAAATACCCTCATAAGG
1 TAAAATGACCGAAATACCC-CATAGGG
* *
51019108 TAAAATGACCAAAATACCCCCGTAGGG
1 TAAAATGACCGAAATA-CCCCATAGGG
* * *
51019135 TAAAATAATCGAAATACCCTTATAGGG
1 TAAAATGACCGAAATACCC-CATAGGG
** *
51019162 TAAAATGACTAAAATACCCCCATAAGG
1 TAAAATGACCGAAATA-CCCCATAGGG
*
51019189 TCAAATGA
1 TAAAATGA
51019197 TTGTTATACC
Statistics
Matches: 279, Mismatches: 43, Indels: 20
0.82 0.13 0.06
Matches are distributed among these distances:
26 8 0.03
27 259 0.93
28 12 0.04
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.20
Consensus pattern (26 bp):
TAAAATGACCGAAATACCCCATAGGG
Found at i:51018921 original size:54 final size:53
Alignment explanation
Indices: 51018838--51019196 Score: 389
Period size: 54 Copynumber: 6.7 Consensus size: 53
51018828 GTGAGGTCAA
* * *
51018838 TAAAATGACCAAAATACCCTCAG-AGGGTAAAATGACCGAAATACACCCATAGGA
1 TAAAATGATCAAAATACCC-CCGTAGGGTAAAATGACCGAAATAC-CCCATAGGG
* * * * * * *
51018892 TAAAACGATCTAAATACCCCCGTAAGGTAAAATAATCAAAATACTCTCATAGGG
1 TAAAATGATCAAAATACCCCCGTAGGGTAAAATGACCGAAATAC-CCCATAGGG
* * * *
51018946 TAAAATGATCGAAATACCCTCATAGGGTAAAATGATCGAAATACCCCTATAGGG
1 TAAAATGATCAAAATACCCCCGTAGGGTAAAATGACCGAAATACCCC-ATAGGG
* *
51019000 TAAAATGATCGAAATACCCCTGTAGGGTAAAATGACCGAAATACCCCTATAGGG
1 TAAAATGATCAAAATACCCCCGTAGGGTAAAATGACCGAAATACCCC-ATAGGG
* * * *
51019054 TAAAATGACCAAAATACTCCCGTAGGGTAAAATAACCGAAATACCCTCATAAGG
1 TAAAATGATCAAAATACCCCCGTAGGGTAAAATGACCGAAATACCC-CATAGGG
* * * *
51019108 TAAAATGACCAAAATACCCCCGTAGGGTAAAATAATCGAAATACCCTTATAGGG
1 TAAAATGATCAAAATACCCCCGTAGGGTAAAATGACCGAAATACCC-CATAGGG
* * *
51019162 TAAAATGA-CTAAAATACCCCCATAAGGTCAAATGA
1 TAAAATGATC-AAAATACCCCCGTAGGGTAAAATGA
51019197 TTGTTATACC
Statistics
Matches: 264, Mismatches: 37, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
53 5 0.02
54 258 0.98
55 1 0.00
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.20
Consensus pattern (53 bp):
TAAAATGATCAAAATACCCCCGTAGGGTAAAATGACCGAAATACCCCATAGGG
Found at i:51018977 original size:81 final size:80
Alignment explanation
Indices: 51018838--51019196 Score: 387
Period size: 81 Copynumber: 4.4 Consensus size: 80
51018828 GTGAGGTCAA
* * * * *
51018838 TAAAATGACCAAAATACCCTCAGAGGGTAAAATGACCGAAATACACCCATAGGATAAAACGATCT
1 TAAAATAACCAAAATACCCTCATAGGGTAAAATGACCGAAATAC-CCCATAGGGTAAAATGATCG
*
51018903 AAATACCCCCGTAAGG
65 AAATACCCCCGTAGGG
* * *
51018919 TAAAATAATCAAAATACTCTCATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGATCG
1 TAAAATAACCAAAATACCCTCATAGGGTAAAATGACCGAAATACCC-CATAGGGTAAAATGATCG
**
51018984 AAATACCCCTATAGGG
65 AAATACCCCCGTAGGG
* * * * *
51019000 TAAAATGATCGAAATACCC-CTGTAGGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGACC
1 TAAAATAACCAAAATACCCTC-ATAGGGTAAAATGACCGAAATACCCC-ATAGGGTAAAATGATC
* *
51019064 AAAATACTCCCGTAGGG
64 GAAATACCCCCGTAGGG
* * * * *
51019081 TAAAATAACCGAAATACCCTCATAAGGTAAAATGACCAAAATACCCCCGTAGGGTAAAATAATCG
1 TAAAATAACCAAAATACCCTCATAGGGTAAAATGACCGAAATA-CCCCATAGGGTAAAATGATCG
***
51019146 AAATACCCTTATAGGG
65 AAATACCCCCGTAGGG
* * * * *
51019162 TAAAATGACTAAAATACCCCCATAAGGTCAAATGA
1 TAAAATAACCAAAATACCCTCATAGGGTAAAATGA
51019197 TTGTTATACC
Statistics
Matches: 234, Mismatches: 39, Indels: 10
0.83 0.14 0.04
Matches are distributed among these distances:
80 4 0.02
81 225 0.96
82 5 0.02
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.20
Consensus pattern (80 bp):
TAAAATAACCAAAATACCCTCATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGATCGA
AATACCCCCGTAGGG
Found at i:51022649 original size:23 final size:23
Alignment explanation
Indices: 51022623--51022666 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
51022613 ATGTTAATTT
51022623 AATTAGTAAAAATATA-TATTTTG
1 AATT-GTAAAAATATATTATTTTG
* *
51022646 AATTGTAGAATTATATTATTT
1 AATTGTAAAAATATATTATTT
51022667 AAAGAATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (23 bp):
AATTGTAAAAATATATTATTTTG
Found at i:51026319 original size:183 final size:183
Alignment explanation
Indices: 51026011--51026377 Score: 734
Period size: 183 Copynumber: 2.0 Consensus size: 183
51026001 CACAATCCCA
51026011 CACGTCGCTAGTTAGCTGTAATTTTAATATTTAAAAGAGTATAACAAAGTTAAAATATGATTTTA
1 CACGTCGCTAGTTAGCTGTAATTTTAATATTTAAAAGAGTATAACAAAGTTAAAATATGATTTTA
51026076 CTCCTTTAAAGTGTTTTTTACCCTTTTCTTCAACCTTATATCTCCCTCTCCCTCACGATAGAAGT
66 CTCCTTTAAAGTGTTTTTTACCCTTTTCTTCAACCTTATATCTCCCTCTCCCTCACGATAGAAGT
51026141 TGTAAAATACAGGGTTTTTATTTTTCTGTCTCACCTCTCAGCCTTAGAAAGTG
131 TGTAAAATACAGGGTTTTTATTTTTCTGTCTCACCTCTCAGCCTTAGAAAGTG
51026194 CACGTCGCTAGTTAGCTGTAATTTTAATATTTAAAAGAGTATAACAAAGTTAAAATATGATTTTA
1 CACGTCGCTAGTTAGCTGTAATTTTAATATTTAAAAGAGTATAACAAAGTTAAAATATGATTTTA
51026259 CTCCTTTAAAGTGTTTTTTACCCTTTTCTTCAACCTTATATCTCCCTCTCCCTCACGATAGAAGT
66 CTCCTTTAAAGTGTTTTTTACCCTTTTCTTCAACCTTATATCTCCCTCTCCCTCACGATAGAAGT
51026324 TGTAAAATACAGGGTTTTTATTTTTCTGTCTCACCTCTCAGCCTTAGAAAGTG
131 TGTAAAATACAGGGTTTTTATTTTTCTGTCTCACCTCTCAGCCTTAGAAAGTG
51026377 C
1 C
51026378 CTTAAGGCGA
Statistics
Matches: 184, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
183 184 1.00
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (183 bp):
CACGTCGCTAGTTAGCTGTAATTTTAATATTTAAAAGAGTATAACAAAGTTAAAATATGATTTTA
CTCCTTTAAAGTGTTTTTTACCCTTTTCTTCAACCTTATATCTCCCTCTCCCTCACGATAGAAGT
TGTAAAATACAGGGTTTTTATTTTTCTGTCTCACCTCTCAGCCTTAGAAAGTG
Found at i:51027326 original size:23 final size:23
Alignment explanation
Indices: 51027296--51027339 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
51027286 TTCTTTTTTC
51027296 TTTTTAAGTTTTTATTTATTTAA
1 TTTTTAAGTTTTTATTTATTTAA
51027319 TTTTTAAGTTTTTATTTATTT
1 TTTTTAAGTTTTTATTTATTT
51027340 TTCTTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.73
Consensus pattern (23 bp):
TTTTTAAGTTTTTATTTATTTAA
Found at i:51027424 original size:20 final size:22
Alignment explanation
Indices: 51027385--51027429 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
51027375 ATTTGAAATG
51027385 TTTTACAATATTACTTTTTAAAA
1 TTTTACAATATTA-TTTTTAAAA
51027408 TTTTA-AATATT-TTTTTAAAA
1 TTTTACAATATTATTTTTAAAA
51027428 TT
1 TT
51027430 ATTTTTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 11 0.50
22 6 0.27
23 5 0.23
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTTACAATATTATTTTTAAAA
Found at i:51027446 original size:34 final size:36
Alignment explanation
Indices: 51027385--51027461 Score: 106
Period size: 34 Copynumber: 2.2 Consensus size: 36
51027375 ATTTGAAATG
51027385 TTTTACAATATTACTTTTTAAAATTTTAAATAT-T-T
1 TTTTA-AATATTACTTTTTAAAATTTTAAATATATAT
*
51027420 TTTTAAA-ATTATTTTTTAAAAATTTTAAATATATAT
1 TTTTAAATATTACTTTTT-AAAATTTTAAATATATAT
51027456 TTTTAA
1 TTTTAA
51027462 TAAATAAAAC
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
33 9 0.24
34 16 0.42
35 6 0.16
36 7 0.18
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (36 bp):
TTTTAAATATTACTTTTTAAAATTTTAAATATATAT
Found at i:51029655 original size:17 final size:18
Alignment explanation
Indices: 51029618--51029655 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
51029608 CTGCTATTTT
*
51029618 AAATGAAAACAAAATGAA
1 AAATGAAAACAAAATAAA
*
51029636 AAAT-AAAAGAAAATAAA
1 AAATGAAAACAAAATAAA
51029653 AAA
1 AAA
51029656 ATATAAAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.79, C:0.03, G:0.08, T:0.11
Consensus pattern (18 bp):
AAATGAAAACAAAATAAA
Found at i:51030196 original size:17 final size:16
Alignment explanation
Indices: 51030165--51030205 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
51030155 TATTTTTTAA
51030165 TTTTAAA-TA-TAATT
1 TTTTAAATTATTAATT
51030179 TTTATAAATTATTAATT
1 TTT-TAAATTATTAATT
51030196 TTTTAAATTA
1 TTTTAAATTA
51030206 CTTTTAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 3 0.12
15 4 0.17
16 9 0.38
17 8 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTTTAAATTATTAATT
Found at i:51036296 original size:15 final size:15
Alignment explanation
Indices: 51036276--51036309 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
51036266 ATCTTTAAAA
51036276 ATAATTTAAAAAATC
1 ATAATTTAAAAAATC
*
51036291 ATAATTTAAAAAATT
1 ATAATTTAAAAAATC
51036306 ATAA
1 ATAA
51036310 ATCAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (15 bp):
ATAATTTAAAAAATC
Found at i:51036321 original size:20 final size:20
Alignment explanation
Indices: 51036286--51036357 Score: 83
Period size: 20 Copynumber: 3.5 Consensus size: 20
51036276 ATAATTTAAA
51036286 AAATCATAATTTAAAAAATTAT
1 AAATCA-AA-TTAAAAAATTAT
51036308 AAATCAAATTAAAAAATTA-
1 AAATCAAATTAAAAAATTAT
*
51036327 AAATATAAATTAAAAATATTAT
1 AAAT-CAAATTAAAAA-ATTAT
*
51036349 AAAACAAAT
1 AAATCAAAT
51036358 AATAAATTTG
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
19 4 0.09
20 21 0.48
21 10 0.23
22 9 0.20
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (20 bp):
AAATCAAATTAAAAAATTAT
Found at i:51036348 original size:41 final size:40
Alignment explanation
Indices: 51036285--51036365 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 40
51036275 AATAATTTAA
* *
51036285 AAAATCATAATTTAAAAAATTATAAATCAAATTAAAAAATT
1 AAAATCATAAATTAAAAAATTATAAAACAAA-TAAAAAATT
*
51036326 AAAAT-ATAAATTAAAAATATTATAAAACAAATAATAAATT
1 AAAATCATAAATTAAAAA-ATTATAAAACAAATAAAAAATT
51036366 TGAAAAGTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
40 19 0.53
41 17 0.47
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (40 bp):
AAAATCATAAATTAAAAAATTATAAAACAAATAAAAAATT
Found at i:51036440 original size:22 final size:21
Alignment explanation
Indices: 51036406--51036479 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
51036396 ATTTTATTTA
51036406 TTAAAAAATATATTTAAAATT
1 TTAAAAAATATATTTAAAATT
*
51036427 TTAAAAAATAATATTATAAAACAT
1 TTAAAAAAT-ATATT-TAAAA-TT
* * *
51036451 TTCAAATATACATTTAAAATT
1 TTAAAAAATATATTTAAAATT
*
51036472 TTATAAAA
1 TTAAAAAA
51036480 CAAATAATAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
21 15 0.36
22 10 0.24
23 9 0.21
24 8 0.19
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (21 bp):
TTAAAAAATATATTTAAAATT
Found at i:51036512 original size:12 final size:12
Alignment explanation
Indices: 51036474--51036519 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
51036464 TTAAAATTTT
51036474 ATAAAACAAATA
1 ATAAAACAAATA
51036486 AT-AAACAAATAA
1 ATAAAACAAAT-A
*
51036498 ATAAAATAAATA
1 ATAAAACAAATA
*
51036510 ATAAATCAAA
1 ATAAAACAAA
51036520 CGTGTATGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 8 0.28
12 14 0.48
13 7 0.24
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.20
Consensus pattern (12 bp):
ATAAAACAAATA
Found at i:51039949 original size:53 final size:53
Alignment explanation
Indices: 51039891--51039996 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
51039881 AAGAATCTGC
51039891 CCTTACTTTCAATAATGCCTCAGCAAAATCGTACTTAACCTACTACTTAGAAG
1 CCTTACTTTCAATAATGCCTCAGCAAAATCGTACTTAACCTACTACTTAGAAG
51039944 CCTTACTTTCAATAATGCCTCAGCAAAATCGTACTTAACCTACTACTTAGAAG
1 CCTTACTTTCAATAATGCCTCAGCAAAATCGTACTTAACCTACTACTTAGAAG
51039997 AGACCTAAAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.34, C:0.26, G:0.09, T:0.30
Consensus pattern (53 bp):
CCTTACTTTCAATAATGCCTCAGCAAAATCGTACTTAACCTACTACTTAGAAG
Found at i:51044972 original size:9 final size:9
Alignment explanation
Indices: 51044960--51044999 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
51044950 AAATCACAAA
51044960 ATTTCCAAC
1 ATTTCCAAC
51044969 ATTTCCAAC
1 ATTTCCAAC
*
51044978 ATTACC-AC
1 ATTTCCAAC
51044986 ATTTCCAAC
1 ATTTCCAAC
51044995 ATTTC
1 ATTTC
51045000 TCAAATCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 7 0.25
9 21 0.75
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.35
Consensus pattern (9 bp):
ATTTCCAAC
Found at i:51058461 original size:52 final size:52
Alignment explanation
Indices: 51058390--51058685 Score: 487
Period size: 52 Copynumber: 5.8 Consensus size: 52
51058380 ATCAAGTGAC
51058390 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
51058442 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
51058494 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
51058546 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
51058592 AAAGTGATAAGTGATAGTTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* **
51058644 AAAGTGATAAGTGACAGCTTTAGCTACACTTATCTGATCAAG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAG
51058686 AAACAAAGTG
Statistics
Matches: 229, Mismatches: 9, Indels: 12
0.92 0.04 0.05
Matches are distributed among these distances:
46 43 0.19
52 186 0.81
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (52 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
Found at i:51058614 original size:46 final size:46
Alignment explanation
Indices: 51058546--51058702 Score: 190
Period size: 46 Copynumber: 3.3 Consensus size: 46
51058536 TGACAAGTGG
* *
51058546 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGTTTCGGCTACACTTATCTGATCAAGAGAC
*
51058592 AAAGTGATAAGTGATAGTTTCGGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGTTTCGGCTACACTTATCTGATCAAGAGAC
* * *
51058638 AAGTGAAAAGTGATAAGTGACAGCTTT-AGCTACACTTATCTGATCAAGAAAC
1 ------AAAGTGATAAGTGATAG-TTTCGGCTACACTTATCTGATCAAGAGAC
51058690 AAAGTGATAAGTG
1 AAAGTGATAAGTG
51058703 GCTACACTTA
Statistics
Matches: 97, Mismatches: 7, Indels: 14
0.82 0.06 0.12
Matches are distributed among these distances:
46 56 0.58
52 38 0.39
53 3 0.03
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGTTTCGGCTACACTTATCTGATCAAGAGAC
Found at i:51058663 original size:98 final size:98
Alignment explanation
Indices: 51058376--51058702 Score: 519
Period size: 98 Copynumber: 3.3 Consensus size: 98
51058366 TTTGAGTACT
*
51058376 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
51058441 GAAAGTGATAAGTGATAGCTTCGGCTACACTTA
66 GAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
51058474 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGAGAC------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
*
51058539 CAAGTGGAAAGTGATAAGTGATAGCTTCGGCTATACTTA
60 CAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
51058578 TCTGATCAAGAGACAAAGTGATAAGTGATAGTTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
* * **
51058643 AAAAGTGATAAGTGACAGCTTTAGCTACACTTA
66 GAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
51058676 TCTGATCAAGAAACAAAGTGATAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTG
51058703 GCTACACTTA
Statistics
Matches: 214, Mismatches: 9, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
98 118 0.55
104 96 0.45
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (98 bp):
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:51058737 original size:35 final size:37
Alignment explanation
Indices: 51058666--51058737 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
51058656 GACAGCTTTA
51058666 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
51058703 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
51058738 ATCATACGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
35 12 0.36
36 4 0.12
37 17 0.52
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:51060307 original size:52 final size:52
Alignment explanation
Indices: 51060251--51060391 Score: 141
Period size: 52 Copynumber: 2.7 Consensus size: 52
51060241 AATAAATACC
*
51060251 AAAAATTTATTTTAAAA-A-TTAAAAGAAGTATTTT-AAAATATTTTAAAATTTA
1 AAAAATTT-TTTAAAAAGATTTAAAA-AAGTATTTTAAAAATATTTTAAAA-TTA
*
51060303 AAAAA-TTTTTAAAAAGTATTTTAAAAAGTATTTTAAAAATATTTTAAAATTA
1 AAAAATTTTTTAAAAAG-ATTTAAAAAAGTATTTTAAAAATATTTTAAAATTA
** * *
51060355 AAAAA-TAATAAAAAAGTATTTTAAAAA-TATTTTAAAA
1 AAAAATTTTTTAAAAAG-ATTTAAAAAAGTATTTTAAAA
51060392 TTAAAAAATA
Statistics
Matches: 80, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
50 7 0.09
51 12 0.15
52 42 0.52
53 19 0.24
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.40
Consensus pattern (52 bp):
AAAAATTTTTTAAAAAGATTTAAAAAAGTATTTTAAAAATATTTTAAAATTA
Found at i:51060315 original size:11 final size:12
Alignment explanation
Indices: 51060299--51060391 Score: 75
Period size: 12 Copynumber: 7.6 Consensus size: 12
51060289 TATTTTAAAA
51060299 TTTAAAAAAT-T
1 TTTAAAAAATAT
*
51060310 TTTAAAAAGTAT
1 TTTAAAAAATAT
*
51060322 TTTAAAAAGTAT
1 TTTAAAAAATAT
51060334 TTT-AAAAATAT
1 TTTAAAAAATAT
*
51060345 TTTAAAATTAAAAAAT
1 TTT--AA--AAAATAT
**
51060361 AATAAAAAAGTAT
1 TTTAAAAAA-TAT
51060374 TTT-AAAAATAT
1 TTTAAAAAATAT
51060385 TTTAAAA
1 TTTAAAA
51060392 TTAAAAAATA
Statistics
Matches: 66, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
11 25 0.38
12 28 0.42
13 3 0.05
14 3 0.05
16 7 0.11
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (12 bp):
TTTAAAAAATAT
Found at i:51060323 original size:30 final size:31
Alignment explanation
Indices: 51060258--51060397 Score: 102
Period size: 31 Copynumber: 4.5 Consensus size: 31
51060248 ACCAAAAATT
51060258 TATTTTAAAAATTAAAAGAAGTATTTTAAAA
1 TATTTTAAAAATTAAAAGAAGTATTTTAAAA
*
51060289 TATTTTAAAATTTAAAA-AA-T-TTTTAAAAA
1 TATTTTAAAAATTAAAAGAAGTATTTT-AAAA
*
51060318 GTATTTTAAAAAGTATTTTAAA-AA-TATTTT-AAA
1 -TATTTT-AAAA--A-TTAAAAGAAGTATTTTAAAA
*
51060351 -A-TTAAAAAATAATAAAA-AAGTATTTTAAAAA
1 TATTTTAAAAAT--TAAAAGAAGTATTTT-AAAA
51060382 TATTTT-AAAATTAAAA
1 TATTTTAAAAATTAAAA
51060398 AATAAATATA
Statistics
Matches: 89, Mismatches: 6, Indels: 29
0.72 0.05 0.23
Matches are distributed among these distances:
26 1 0.01
27 1 0.01
28 10 0.11
29 15 0.17
30 15 0.17
31 24 0.27
32 6 0.07
33 5 0.06
34 8 0.09
35 4 0.04
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (31 bp):
TATTTTAAAAATTAAAAGAAGTATTTTAAAA
Found at i:51060324 original size:12 final size:12
Alignment explanation
Indices: 51060299--51060351 Score: 83
Period size: 12 Copynumber: 4.6 Consensus size: 12
51060289 TATTTTAAAA
*
51060299 TTTAAAAAAT-T
1 TTTAAAAAGTAT
51060310 TTTAAAAAGTAT
1 TTTAAAAAGTAT
51060322 TTTAAAAAGTAT
1 TTTAAAAAGTAT
51060334 TTTAAAAA-TAT
1 TTTAAAAAGTAT
51060345 TTTAAAA
1 TTTAAAA
51060352 TTAAAAAATA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
11 19 0.47
12 21 0.52
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (12 bp):
TTTAAAAAGTAT
Found at i:51060327 original size:23 final size:23
Alignment explanation
Indices: 51060285--51060391 Score: 85
Period size: 23 Copynumber: 5.1 Consensus size: 23
51060275 GAAGTATTTT
51060285 AAAATATTTT--AAA-A-TTTAA
1 AAAATATTTTAAAAATATTTTAA
51060304 AAAAT-TTTTAAAAAGTATTTTAA
1 AAAATATTTTAAAAA-TATTTTAA
*
51060327 AAAGTATTTTAAAAATATTTT--
1 AAAATATTTTAAAAATATTTTAA
**
51060348 -AAA-A--TTAAAAA-ATAATAA
1 AAAATATTTTAAAAATATTTTAA
51060366 AAAAGTATTTTAAAAATATTTTAA
1 AAAA-TATTTTAAAAATATTTTAA
51060390 AA
1 AA
51060392 TTAAAAAATA
Statistics
Matches: 68, Mismatches: 6, Indels: 23
0.70 0.06 0.24
Matches are distributed among these distances:
16 3 0.04
17 7 0.10
18 4 0.06
19 9 0.13
20 5 0.07
21 1 0.01
22 1 0.01
23 22 0.32
24 16 0.24
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (23 bp):
AAAATATTTTAAAAATATTTTAA
Found at i:51060379 original size:40 final size:40
Alignment explanation
Indices: 51060325--51060402 Score: 156
Period size: 40 Copynumber: 1.9 Consensus size: 40
51060315 AAAGTATTTT
51060325 AAAAAGTATTTTAAAAATATTTTAAAATTAAAAAATAATA
1 AAAAAGTATTTTAAAAATATTTTAAAATTAAAAAATAATA
51060365 AAAAAGTATTTTAAAAATATTTTAAAATTAAAAAATAA
1 AAAAAGTATTTTAAAAATATTTTAAAATTAAAAAATAA
51060403 ATATATTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.35
Consensus pattern (40 bp):
AAAAAGTATTTTAAAAATATTTTAAAATTAAAAAATAATA
Found at i:51061296 original size:16 final size:16
Alignment explanation
Indices: 51061275--51061305 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51061265 AAAATTGATT
*
51061275 CAAAAAGTAAAAAAAA
1 CAAAAACTAAAAAAAA
51061291 CAAAAACTAAAAAAA
1 CAAAAACTAAAAAAA
51061306 TTATGTGGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.10, G:0.03, T:0.06
Consensus pattern (16 bp):
CAAAAACTAAAAAAAA
Found at i:51083267 original size:42 final size:42
Alignment explanation
Indices: 51083212--51083333 Score: 129
Period size: 42 Copynumber: 2.9 Consensus size: 42
51083202 AGCTCATAGG
* * * ** *
51083212 AGCTGAACGGAAACCTATAAGGGTTAATCTGAAGCTCAGAAA-
1 AGCTAAACTGAAACCAATAAGGGTTAAAATGAAACTCA-AAAT
* *
51083254 AGCTAAACTGAAACCCATTAGGGTTAAAATGAAACTCAAAAT
1 AGCTAAACTGAAACCAATAAGGGTTAAAATGAAACTCAAAAT
* * *
51083296 AGCTAAACTTAAACCAAGAAGGGTTAAATTGAAACTCA
1 AGCTAAACTGAAACCAATAAGGGTTAAAATGAAACTCA
51083334 TATGAGTTGA
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
41 3 0.04
42 64 0.96
ACGTcount: A:0.45, C:0.16, G:0.18, T:0.20
Consensus pattern (42 bp):
AGCTAAACTGAAACCAATAAGGGTTAAAATGAAACTCAAAAT
Found at i:51085455 original size:16 final size:15
Alignment explanation
Indices: 51085430--51085462 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
51085420 TTGGGTTGAG
51085430 AAAATAATTTAATTA
1 AAAATAATTTAATTA
51085445 AAAATTAATTTAATTA
1 AAAA-TAATTTAATTA
51085461 AA
1 AA
51085463 CTAAATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
AAAATAATTTAATTA
Found at i:51086781 original size:25 final size:25
Alignment explanation
Indices: 51086744--51086794 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
51086734 GCGCTGCTAT
* * *
51086744 CACAGACGTCGCTAAAGATCATGAC
1 CACAAACGCCGCTAAAGAACATGAC
*
51086769 CACAAACGCCGCTGAAGAACATGAC
1 CACAAACGCCGCTAAAGAACATGAC
51086794 C
1 C
51086795 TTTAGCGACG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.37, C:0.31, G:0.20, T:0.12
Consensus pattern (25 bp):
CACAAACGCCGCTAAAGAACATGAC
Found at i:51086815 original size:68 final size:68
Alignment explanation
Indices: 51086704--51086837 Score: 182
Period size: 68 Copynumber: 2.0 Consensus size: 68
51086694 TCTTTCGCAT
* * *
51086704 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTGCTATCACAGACG-TCGCTAAAGATCATGA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTGCTATCACAAACGCT-GCTAAAGAACATGA
51086768 CCAC
65 CCAC
* * *
51086772 AAACGCCGCTGAAGAACATGACCTTTAGCGACGCCT-TTTTCACAAACGCTGCTAAAGAACATGA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGACG-CTGCTATCACAAACGCTGCTAAAGAACATGA
51086836 CC
65 CC
51086838 TTTAGCGATG
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
68 55 0.95
69 3 0.05
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.19
Consensus pattern (68 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTGCTATCACAAACGCTGCTAAAGAACATGAC
CAC
Found at i:51086868 original size:43 final size:43
Alignment explanation
Indices: 51086769--51086870 Score: 143
Period size: 43 Copynumber: 2.4 Consensus size: 43
51086759 AGATCATGAC
* *
51086769 CACAAACGCCGCTGAAGAACATGACCTTTAGCGACGCCTTTTT
1 CACAAACGCTGCTAAAGAACATGACCTTTAGCGACGCCTTTTT
* *
51086812 CACAAACGCTGCTAAAGAACATGACCTTTAGCGATG-TTTATTT
1 CACAAACGCTGCTAAAGAACATGACCTTTAGCGACGCCTT-TTT
*
51086855 CACAAACGTTGCTAAA
1 CACAAACGCTGCTAAA
51086871 AGTACCATTT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
42 2 0.04
43 51 0.96
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
CACAAACGCTGCTAAAGAACATGACCTTTAGCGACGCCTTTTT
Found at i:51096097 original size:27 final size:28
Alignment explanation
Indices: 51096053--51096107 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
51096043 GAGCCTTATT
*
51096053 TAGTAACAGTACAGTGT-GGCCTTAGCC
1 TAGTAACAGTACAATGTGGGCCTTAGCC
51096080 TAGT-ACAGTAACAATGTGGGCCTTAGCC
1 TAGTAACAGT-ACAATGTGGGCCTTAGCC
51096108 CAATATAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 5 0.20
27 10 0.40
28 10 0.40
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (28 bp):
TAGTAACAGTACAATGTGGGCCTTAGCC
Found at i:51096266 original size:26 final size:26
Alignment explanation
Indices: 51096230--51096305 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 26
51096220 ACCAACATCG
51096230 CAGCAAAGCTGCCAGTAATAGTATCA
1 CAGCAAAGCTGCCAGTAATAGTATCA
51096256 CAGCAAAGCTGCCAGT-ATCAGTATCA
1 CAGCAAAGCTGCCAGTAAT-AGTATCA
* * *
51096282 CAGCAAAACTACCAGTAACAGTAT
1 CAGCAAAGCTGCCAGTAATAGTAT
51096306 ACTTCCTCCA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
25 2 0.04
26 42 0.93
27 1 0.02
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.18
Consensus pattern (26 bp):
CAGCAAAGCTGCCAGTAATAGTATCA
Found at i:51103046 original size:43 final size:41
Alignment explanation
Indices: 51102977--51103118 Score: 158
Period size: 43 Copynumber: 3.3 Consensus size: 41
51102967 CAATGACCTC
* *
51102977 TAGCGGCGCTTTTCCAACAAATGCCGCTAAAGACCCTGATCTT
1 TAGCGGCGCTTTTCC-ACAAACGCCGCTAAAGACCATGA-CTT
* * *
51103020 TAGCGGCGTTTTTCTCGCAAACGCCGCTGAAGACCATGAACTT
1 TAGCGGCGCTTTTC-CACAAACGCCGCTAAAGACCATG-ACTT
*
51103063 TAGCGGCGCTTTTCCCACAAACGCTGCTAAAGACCATGACATT
1 TAGCGGCGCTTTT-CCACAAACGCCGCTAAAGACCATGAC-TT
* *
51103106 TAGTGGCGGTTTT
1 TAGCGGCGCTTTT
51103119 TTTAAAAACG
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
42 2 0.02
43 79 0.94
44 3 0.04
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (41 bp):
TAGCGGCGCTTTTCCACAAACGCCGCTAAAGACCATGACTT
Found at i:51103516 original size:21 final size:21
Alignment explanation
Indices: 51103449--51103519 Score: 88
Period size: 21 Copynumber: 3.4 Consensus size: 21
51103439 TTTTATGTTG
*
51103449 CTCTGTTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
51103470 CTCTACTTCCCTCGCTGTAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
51103491 CTCTGCTTCTCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
*
51103512 ATCTGCTT
1 CTCTGCTT
51103520 TAAGCTGTTG
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.06, C:0.42, G:0.17, T:0.35
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:51103606 original size:66 final size:66
Alignment explanation
Indices: 51103512--51103636 Score: 171
Period size: 66 Copynumber: 1.9 Consensus size: 66
51103502 TCGCTGCCGC
*
51103512 ATCTGCTTTAAGCTGTTGATGGAGTTCTTCATA-CTTTCGCTGAACCTCAGCTTCTCTCGCTATT
1 ATCTGCTTTAAGCTGTAGATGGAGTTCTTCATATCTTT-GCTGAACCTCAGCTTCTCTCGCTATT
51103576 GT
65 GT
* * * ** *
51103578 ATCTGCTTTAAGTTGTAGCTGGATTTCTTCATATCTTTTTTGAACCTTAGCTTCTCTCG
1 ATCTGCTTTAAGCTGTAGATGGAGTTCTTCATATCTTTGCTGAACCTCAGCTTCTCTCG
51103637 ATGTTGCCTC
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
66 47 0.92
67 4 0.08
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (66 bp):
ATCTGCTTTAAGCTGTAGATGGAGTTCTTCATATCTTTGCTGAACCTCAGCTTCTCTCGCTATTG
T
Found at i:51109090 original size:9 final size:9
Alignment explanation
Indices: 51109073--51109370 Score: 161
Period size: 9 Copynumber: 34.9 Consensus size: 9
51109063 TAAGTATAAT
*
51109073 TAAGCTATG
1 TAAGTTATG
51109082 TAAGTTATG
1 TAAGTTATG
*
51109091 TAAGTTATA
1 TAAGTTATG
*
51109100 TAAGTTGTG
1 TAAGTTATG
*
51109109 T-A-TAATG
1 TAAGTTATG
51109116 TAAGTTATG
1 TAAGTTATG
*
51109125 AAAGTTATG
1 TAAGTTATG
*
51109134 T-A-TTATT
1 TAAGTTATG
51109141 TAAGTTATG
1 TAAGTTATG
51109150 T--GTTATG
1 TAAGTTATG
*
51109157 TAAGTTATT
1 TAAGTTATG
*
51109166 TAAGTTGTG
1 TAAGTTATG
51109175 T-A-TTATG
1 TAAGTTATG
*
51109182 TAAGTCATG
1 TAAGTTATG
* *
51109191 TAGGCTATG
1 TAAGTTATG
51109200 T-A-TTATG
1 TAAGTTATG
51109207 TAAGTTATG
1 TAAGTTATG
* *
51109216 AAAGTTTTATA
1 TAAG--TTATG
*
51109227 TAAGTGAT-
1 TAAGTTATG
**
51109235 TAA-AAATG
1 TAAGTTATG
51109243 T-A-TTATG
1 TAAGTTATG
* *
51109250 TAATTTATT
1 TAAGTTATG
51109259 TAAGTTATTATG
1 TAAG---TTATG
51109271 TAAGTTATG
1 TAAGTTATG
*
51109280 AAAGTTATG
1 TAAGTTATG
51109289 T-A-TTATG
1 TAAGTTATG
* *
51109296 TAATTTATT
1 TAAGTTATG
51109305 TAAG-TATG
1 TAAGTTATG
*
51109313 TAAGTTGTG
1 TAAGTTATG
51109322 T-A-TTATG
1 TAAGTTATG
* *
51109329 CAAGTCATG
1 TAAGTTATG
* *
51109338 TAGGCTATG
1 TAAGTTATG
51109347 T-A-TTATG
1 TAAGTTATG
51109354 TAAGTTATG
1 TAAGTTATG
*
51109363 AAAGTTAT
1 TAAGTTAT
51109371 ATATAAGTTA
Statistics
Matches: 216, Mismatches: 48, Indels: 50
0.69 0.15 0.16
Matches are distributed among these distances:
7 48 0.22
8 24 0.11
9 129 0.60
11 7 0.03
12 8 0.04
ACGTcount: A:0.34, C:0.02, G:0.19, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:51109120 original size:25 final size:25
Alignment explanation
Indices: 51109088--51109149 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
51109078 TATGTAAGTT
*
51109088 ATGTAAGTTAT-ATAAGTTGTGTATA
1 ATGTAAGTTATGA-AAGTTATGTATA
*
51109113 ATGTAAGTTATGAAAGTTATGTATT
1 ATGTAAGTTATGAAAGTTATGTATA
*
51109138 ATTTAAGTTATG
1 ATGTAAGTTATG
51109150 TGTTATGTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 32 0.97
26 1 0.03
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.45
Consensus pattern (25 bp):
ATGTAAGTTATGAAAGTTATGTATA
Found at i:51109139 original size:16 final size:16
Alignment explanation
Indices: 51109120--51109215 Score: 70
Period size: 16 Copynumber: 5.9 Consensus size: 16
51109110 ATAATGTAAG
*
51109120 TTATGAAAGTTATGTA
1 TTATGTAAGTTATGTA
* *
51109136 TTATTTAAGTTATGTG
1 TTATGTAAGTTATGTA
*
51109152 TTATGTAAGTTATTTAA
1 TTATGTAAGTTATGT-A
*
51109169 GTTGTGT-A-TTATGTAA
1 -TTATGTAAGTTATGT-A
* * *
51109185 GTCATGTAGGCTATGTA
1 -TTATGTAAGTTATGTA
51109202 TTATGTAAGTTATG
1 TTATGTAAGTTATG
51109216 AAAGTTTTAT
Statistics
Matches: 61, Mismatches: 15, Indels: 8
0.73 0.18 0.10
Matches are distributed among these distances:
16 49 0.80
17 2 0.03
18 10 0.16
ACGTcount: A:0.29, C:0.02, G:0.21, T:0.48
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:51109177 original size:41 final size:41
Alignment explanation
Indices: 51109066--51109192 Score: 130
Period size: 41 Copynumber: 3.1 Consensus size: 41
51109056 TTAGGAATAA
* * *
51109066 GTATAAT-TAAGCTATGTAAGTTATGTAAGTTATATAAGTTGT
1 GTATAATGTAAGTTATGAAAGTTATGT-A-TTATATAAGTTAT
*
51109108 GTATAATGTAAGTTATGAAAGTTATGTATTATTTAAGTTAT
1 GTATAATGTAAGTTATGAAAGTTATGTATTATATAAGTTAT
* * ** * * *
51109149 GTGTTATGTAAGTTATTTAAGTTGTGTATTATGTAAGTCAT
1 GTATAATGTAAGTTATGAAAGTTATGTATTATATAAGTTAT
51109190 GTA
1 GTA
51109193 GGCTATGTAT
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
41 47 0.65
42 8 0.11
43 17 0.24
ACGTcount: A:0.33, C:0.02, G:0.20, T:0.46
Consensus pattern (41 bp):
GTATAATGTAAGTTATGAAAGTTATGTATTATATAAGTTAT
Found at i:51109183 original size:66 final size:66
Alignment explanation
Indices: 51109085--51109215 Score: 199
Period size: 66 Copynumber: 2.0 Consensus size: 66
51109075 AGCTATGTAA
* * *
51109085 GTTATGTAAGTTATATAAGTTGTGTATAATGTAAGTTATGAAAGTTATGTATTATTTAAGTTATG
1 GTTATGTAAGTTATATAAGTTGTGTATAATGTAAGTCATGAAAGCTATGTATTATGTAAGTTATG
51109150 T
66 T
* * * *
51109151 GTTATGTAAGTTATTTAAGTTGTGTATTATGTAAGTCATGTAGGCTATGTATTATGTAAGTTATG
1 GTTATGTAAGTTATATAAGTTGTGTATAATGTAAGTCATGAAAGCTATGTATTATGTAAGTTATG
51109216 AAAGTTTTAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.47
Consensus pattern (66 bp):
GTTATGTAAGTTATATAAGTTGTGTATAATGTAAGTCATGAAAGCTATGTATTATGTAAGTTATG
T
Found at i:51109245 original size:43 final size:45
Alignment explanation
Indices: 51109197--51109303 Score: 128
Period size: 43 Copynumber: 2.4 Consensus size: 45
51109187 CATGTAGGCT
* *
51109197 ATGTATTATGTAAGTTATGAAAGTT-TTATATAAGTGATTAAA-A
1 ATGTATTATGTAATTTATGAAAGTTATTATATAAGTGATGAAAGA
** * * *
51109240 ATGTATTATGTAATTTATTTAAGTTATTATGTAAGTTATGAAAGTT
1 ATGTATTATGTAATTTATGAAAGTTATTATATAAGTGATGAAAG-A
51109286 ATGTATTATGTAATTTAT
1 ATGTATTATGTAATTTAT
51109304 TTAAGTATGT
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
43 22 0.41
44 14 0.26
46 18 0.33
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (45 bp):
ATGTATTATGTAATTTATGAAAGTTATTATATAAGTGATGAAAGA
Found at i:51109267 original size:21 final size:22
Alignment explanation
Indices: 51109241--51109309 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 22
51109231 TGATTAAAAA
51109241 TGTATTATGTAATTTATTTAAG
1 TGTATTATGTAATTTATTTAAG
* **
51109263 T-TATTATGTAAGTTATGAAAG
1 TGTATTATGTAATTTATTTAAG
51109284 TTATGTATTATGTAATTTATTTAAG
1 ---TGTATTATGTAATTTATTTAAG
51109309 T
1 T
51109310 ATGTAAGTTG
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
21 17 0.46
22 2 0.05
24 1 0.03
25 17 0.46
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.52
Consensus pattern (22 bp):
TGTATTATGTAATTTATTTAAG
Found at i:51109293 original size:25 final size:25
Alignment explanation
Indices: 51109142--51109303 Score: 112
Period size: 25 Copynumber: 6.9 Consensus size: 25
51109132 TGTATTATTT
* **
51109142 AAGTTATGTGTTATGTAAGTTATTT
1 AAGTTATGTATTATGTAAGTTATGA
* * *
51109167 AAGTTGTGTATTATGTAAGTCATGT
1 AAGTTATGTATTATGTAAGTTATGA
* *
51109192 AGGCTATGTATTATGTAAGTTATGA
1 AAGTTATGTATTATGTAAGTTATGA
* *
51109217 AAGTT-T-TA-TA--TAAGTGATTA
1 AAGTTATGTATTATGTAAGTTATGA
* * **
51109237 AA--AATGTATTATGTAATTTATTT
1 AAGTTATGTATTATGTAAGTTATGA
51109260 AAG---T-TATTATGTAAGTTATGA
1 AAGTTATGTATTATGTAAGTTATGA
*
51109281 AAGTTATGTATTATGTAATTTAT
1 AAGTTATGTATTATGTAAGTTAT
51109304 TTAAGTATGT
Statistics
Matches: 106, Mismatches: 21, Indels: 20
0.72 0.14 0.14
Matches are distributed among these distances:
19 1 0.01
20 12 0.11
21 19 0.18
22 3 0.03
23 11 0.10
24 2 0.02
25 58 0.55
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (25 bp):
AAGTTATGTATTATGTAAGTTATGA
Done.