Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62175169
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 981721 characters in sequence are not A, C, G, or T
File 163 of 202
Found at i:51109379 original size:20 final size:20
Alignment explanation
Indices: 51109354--51109396 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
51109344 ATGTATTATG
**
51109354 TAAGTTATGAAAGTTATATA
1 TAAGTTATGAAAAATATATA
*
51109374 TAAGTTATTAAAAATATATA
1 TAAGTTATGAAAAATATATA
51109394 TAA
1 TAA
51109397 ATTTTTAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (20 bp):
TAAGTTATGAAAAATATATA
Found at i:51109404 original size:20 final size:19
Alignment explanation
Indices: 51109368--51109413 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
51109358 TTATGAAAGT
*
51109368 TATATATAAGTTATTAAAAA
1 TATATATAAATTATT-AAAA
* *
51109388 TATATATAAATTTTTAATA
1 TATATATAAATTATTAAAA
51109407 TATATAT
1 TATATAT
51109414 TAAAAATGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
TATATATAAATTATTAAAA
Found at i:51109457 original size:23 final size:22
Alignment explanation
Indices: 51109429--51109473 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
51109419 ATGTATATAA
*
51109429 ATATTAATAAGTTATTAAGTTAT
1 ATATTAAAAAGTTA-TAAGTTAT
*
51109452 ATATTAAAAATTTATAAGTTAT
1 ATATTAAAAAGTTATAAGTTAT
51109474 GTAAATTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (22 bp):
ATATTAAAAAGTTATAAGTTAT
Found at i:51109469 original size:30 final size:30
Alignment explanation
Indices: 51109422--51109482 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
51109412 ATTAAAAATG
* *
51109422 TATATAAATATTAATAAGTTAT-TAAGTTA
1 TATATAAAAATTAATAAGTTATGTAAATTA
*
51109451 TATATTAAAAATTTATAAGTTATGTAAATTA
1 TATA-TAAAAATTAATAAGTTATGTAAATTA
51109482 T
1 T
51109483 GAACTCATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 4 0.15
30 16 0.59
31 7 0.26
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.46
Consensus pattern (30 bp):
TATATAAAAATTAATAAGTTATGTAAATTA
Found at i:51109632 original size:13 final size:13
Alignment explanation
Indices: 51109614--51109643 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
51109604 AATCCTAAAG
51109614 TTAGCATGGGTTT
1 TTAGCATGGGTTT
51109627 TTAGCATGGGTTT
1 TTAGCATGGGTTT
51109640 TTAG
1 TTAG
51109644 AACATAGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.17, C:0.07, G:0.30, T:0.47
Consensus pattern (13 bp):
TTAGCATGGGTTT
Found at i:51111649 original size:106 final size:102
Alignment explanation
Indices: 51111531--51111744 Score: 279
Period size: 106 Copynumber: 2.1 Consensus size: 102
51111521 CTGCAAAATA
* * * *
51111531 TTATTTCATTTTGAACAAAATGACGTCGTTTTGCTATGCACAAT-CTTTTTTATTTTGTTTTTTA
1 TTATTTCATTTTGAACAAAATGACGCCATTTTGCTATGCA-AATAATTTTTTA--TT-TTTTATA
* * *
51111595 AATTGATTTATTTTTTGCGGCGGTTTTATGGGAAAATGCCGC
62 AATTGATTTATATTTTGCGGCGGTTTTAT-AGAAAACGCCGC
*
51111637 TTATTTCATTTTGAACAAAATGACGCCATTTTGCTATGCAAATAATTTTTTATTTTTTATAATTT
1 TTATTTCATTTTGAACAAAATGACGCCATTTTGCTATGCAAATAATTTTTTATTTTTTATAAATT
* *
51111702 TATTTATATTTTGCGGCGTTTTTATAGAAAACGCCGC
66 GATTTATATTTTGCGGCGGTTTTATAGAAAACGCCGC
51111739 -TATTTC
1 TTATTTC
51111745 TAATCTTTTG
Statistics
Matches: 97, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
101 6 0.06
102 10 0.10
103 31 0.32
104 2 0.02
105 3 0.03
106 45 0.46
ACGTcount: A:0.25, C:0.13, G:0.14, T:0.48
Consensus pattern (102 bp):
TTATTTCATTTTGAACAAAATGACGCCATTTTGCTATGCAAATAATTTTTTATTTTTTATAAATT
GATTTATATTTTGCGGCGGTTTTATAGAAAACGCCGC
Found at i:51111671 original size:255 final size:244
Alignment explanation
Indices: 51111324--51111814 Score: 714
Period size: 254 Copynumber: 2.0 Consensus size: 244
51111314 ATGCTAAAAT
* *
51111324 TTTTTTATTTTTTTTATAAATTGATTTACTTTTTGCGGCGTTTTTCTGAAAAATGCCGCTATTTC
1 TTTTTTATTTTTTTTATAAATTGATTTACTTTTTGCGGCGGTTTTATGAAAAATGCCGCTATTTC
* * *
51111389 ATTTTGAACAAAATGGCGCCGTTTTGCTATGCAAATATTTTTTTCTATTTTTTATAATTTTATTT
66 ATTTTGAACAAAATGACGCCATTTTGCTATGCAAATA-ATTTTT-TATTTTTTATAATTTTATTT
* * *
51111454 AT-TTATACGGTGTTTTTATAGAAAACGCCGCTATTGCTTATCTTTCGCGGCGTTTTTTACAAAA
129 ATATTATACGGCGTTTTTATAGAAAACGCCGCTATTGCTAATCTTTCGCGGCGTTTTTCACAAAA
*
51111518 TCGCTGCAAAATATTATTTCATTTTGAACAAAATGACGTCGTTTTGCTATGCACAATC
194 -------AAAATATTATTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCACAATC
* * *
51111576 TTTTTTATTTTGTTTTTTAAATTGATTTATTTTTTGCGGCGGTTTTATGGGAAAATGCCGCTTAT
1 TTTTTTATTTT-TTTTATAAATTGATTTACTTTTTGCGGCGGTTTTAT-GAAAAATGCCGC-TAT
51111641 TTCATTTTGAACAAAATGACGCCATTTTGCTATGCAAATAATTTTTTATTTTTTATAATTTTATT
63 TTCATTTTGAACAAAATGACGCCATTTTGCTATGCAAATAATTTTTTATTTTTTATAATTTTATT
* * * *
51111706 TATATTTTGCGGCGTTTTTATAGAAAACGCCGCTATTTCTAATCTTTTGCGGCGTTTTTCACAAA
128 TATATTATACGGCGTTTTTATAGAAAACGCCGCTATTGCTAATCTTTCGCGGCGTTTTTCACAAA
*
51111771 AACAATATTATTTCATTTTGAACAAAATGACGCCGTTTTGCTAT
193 AAAAATATTATTTCATTTTGAACAAAATGACGCCGTTTTGCTAT
51111815 TTTGTTTCTA
Statistics
Matches: 218, Mismatches: 17, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
247 41 0.19
252 11 0.05
253 54 0.25
254 71 0.33
255 41 0.19
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.47
Consensus pattern (244 bp):
TTTTTTATTTTTTTTATAAATTGATTTACTTTTTGCGGCGGTTTTATGAAAAATGCCGCTATTTC
ATTTTGAACAAAATGACGCCATTTTGCTATGCAAATAATTTTTTATTTTTTATAATTTTATTTAT
ATTATACGGCGTTTTTATAGAAAACGCCGCTATTGCTAATCTTTCGCGGCGTTTTTCACAAAAAA
AATATTATTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCACAATC
Found at i:51112239 original size:15 final size:15
Alignment explanation
Indices: 51112214--51112250 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
51112204 TTAACTCGAC
*
51112214 CCCTGAATCTCTAAA
1 CCCTAAATCTCTAAA
*
51112229 CCTTAAATCTCTAAA
1 CCCTAAATCTCTAAA
51112244 CCCTAAA
1 CCCTAAA
51112251 CCCCTAACAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.38, C:0.32, G:0.03, T:0.27
Consensus pattern (15 bp):
CCCTAAATCTCTAAA
Found at i:51112257 original size:15 final size:15
Alignment explanation
Indices: 51112224--51112294 Score: 56
Period size: 15 Copynumber: 4.8 Consensus size: 15
51112214 CCCTGAATCT
* *
51112224 CTAAACCTTAAATCT
1 CTAAACCTTAAACCC
*
51112239 CTAAACCCTAAACCC
1 CTAAACCTTAAACCC
* *
51112254 CT-AACATTTAACCC
1 CTAAACCTTAAACCC
* *
51112268 TTAAACCCCT-AACCC
1 CTAAA-CCTTAAACCC
51112283 CTAAACCTTAAA
1 CTAAACCTTAAA
51112295 TCTCAACCCT
Statistics
Matches: 42, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
14 13 0.31
15 27 0.64
16 2 0.05
ACGTcount: A:0.39, C:0.37, G:0.00, T:0.24
Consensus pattern (15 bp):
CTAAACCTTAAACCC
Found at i:51112567 original size:21 final size:22
Alignment explanation
Indices: 51112526--51112617 Score: 82
Period size: 22 Copynumber: 4.3 Consensus size: 22
51112516 ACCCTTGAAT
*
51112526 CCTTAAACCCTAAATCC-CTAAC
1 CCTTAACCCCTAAA-CCTCTAAC
* *
51112548 TCTTAACCCC-AAACGTCTAAC
1 CCTTAACCCCTAAACCTCTAAC
* *
51112569 CCTAAACCCCTAACCCTCTAAC
1 CCTTAACCCCTAAACCTCTAAC
* * *
51112591 CCTTAAACCTTAAATCTC-AAC
1 CCTTAACCCCTAAACCTCTAAC
51112612 CCTTAA
1 CCTTAA
51112618 ACCATGATCC
Statistics
Matches: 56, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
20 1 0.02
21 25 0.45
22 30 0.54
ACGTcount: A:0.35, C:0.40, G:0.01, T:0.24
Consensus pattern (22 bp):
CCTTAACCCCTAAACCTCTAAC
Found at i:51112680 original size:310 final size:304
Alignment explanation
Indices: 51112123--51112715 Score: 838
Period size: 310 Copynumber: 1.9 Consensus size: 304
51112113 AATATATTTG
51112123 ATTTATTATTATCTCTTTTACAACTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTA
1 ATTTATTATTATCTCTTTTACAACTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTA
* * * * * *
51112188 ATCTAAACTCGAAACTTTAACTCGACCCCTGAATCTCTAAACCTTAAATCTCTAAACCCTAAACC
66 ATCTAAACCCCAAAATCTAACTCGACCCCTGAATCTCTAAACCCTAAATCCCTAAACCCTAAACC
* *
51112253 CCTAACATTTAACCCTTAAACCCCTAACCCCTAAACCTTAAATCTCAACCCTTAAACCATAACCC
131 CCAAACATCTAACCCTTAAACCCCTAACCCCTAAACCTTAAATCTCAACCCTTAAACCATAACCC
* * *
51112318 CTAATCCATAATCCCTAGACCCATACTCCCTAAACCTTAAAATATGAACTCCTAAACCGGCCTTA
196 CTAATCCATAATCCCTAAACCCATACTCCATAAACCTTAAAATACGAACTCCTAAACCGGCCTTA
*
51112383 AATCTTAAATAAATCATATACCCTAAACCAAAAACCCTAAACAA
261 AATCTTAAATAAATCATAGACCCTAAACCAAAAACCCTAAACAA
* *
51112427 ATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTCAAATATAAATT-AAAAA-AATTA
1 ATTTATTATTATCTCTTTTACAACTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTA
* * *
51112490 ATCTAAACGCCCAAAATCCTAACTCGACCCTTGAATC-CTTAAACCCTAAATCCCT-AACTCTTA
66 ATCTAAAC-CCCAAAAT-CTAACTCGACCCCTGAATCTC-TAAACCCTAAATCCCTAAACCCTAA
*
51112553 ACCCCAAACGTCTAACCC-TAAACCCCTAACCCTCTAACCCTTAAACCTTAAATCTCAACCCTTA
128 ACCCCAAACATCTAACCCTTAAACCCCTAA----C---CCC-TAAACCTTAAATCTCAACCCTTA
* * *
51112617 AACCATGATCCCTAATCCATAATCCCTAAACCCATACTCCATATACCTTAAAA-ACGTAACTCCT
185 AACCATAACCCCTAATCCATAATCCCTAAACCCATACTCCATAAACCTTAAAATACG-AACTCCT
*
51112681 AAACTGGCCTTAAATCTTAAATAAATCATAGACCC
249 AAACCGGCCTTAAATCTTAAATAAATCATAGACCC
51112716 AAATACCAGA
Statistics
Matches: 255, Mismatches: 22, Indels: 18
0.86 0.07 0.06
Matches are distributed among these distances:
302 24 0.09
303 32 0.13
304 82 0.32
306 1 0.00
309 5 0.02
310 111 0.44
ACGTcount: A:0.40, C:0.28, G:0.03, T:0.28
Consensus pattern (304 bp):
ATTTATTATTATCTCTTTTACAACTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTA
ATCTAAACCCCAAAATCTAACTCGACCCCTGAATCTCTAAACCCTAAATCCCTAAACCCTAAACC
CCAAACATCTAACCCTTAAACCCCTAACCCCTAAACCTTAAATCTCAACCCTTAAACCATAACCC
CTAATCCATAATCCCTAAACCCATACTCCATAAACCTTAAAATACGAACTCCTAAACCGGCCTTA
AATCTTAAATAAATCATAGACCCTAAACCAAAAACCCTAAACAA
Found at i:51112875 original size:114 final size:113
Alignment explanation
Indices: 51112724--51113156 Score: 563
Period size: 114 Copynumber: 3.8 Consensus size: 113
51112714 CCAAATACCA
*
51112724 GAGCATTAGCGGCGCTTTCCTAAAAAACGCCGA-TAAATCCCCGAAAGCTCAAAAAACGGCGTCG
1 GAGCATTAGCGGCGCTTTCCTAAAAAACGCC-ACTAAATCCCCGAAAGCTCAGAAAACGGCGTCG
51112788 TTGGGCTTATGTCTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCT
65 TTGGGCTTA-GT-TTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCT
* ** *
51112839 GAGCATTAGCGGTGC-TTCCTAAAAAACGCCACTAAATCAGCGAAAGCTCAGAAAACGGCATCGT
1 GAGCATTAGCGGCGCTTTCCTAAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGT
* * *
51112903 TAGGCTTAGTTTATTTAGCGGCGCTTCCCCAAAAACGCCGCTAAAGCCCT
66 TGGGCTTAGTTT-TTT-GCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCT
* * * *
51112953 GAACATTAGCGGCGCTTT-CTAAAAAACGCCACTACATCCCCGAAAGCCCAGAAAACGGGGTCGT
1 GAGCATTAGCGGCGCTTTCCTAAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGT
* *
51113017 TGGGCTTAGATTTTTTTGCGGCGCTTTATC-AAAACGCCGTTAAAGCCCT
66 TGGGCTTAG--TTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCT
* * * * *
51113066 G-GAAATTAGTGGCGCTTTCCT-AAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAATGGCGTTG
1 GAG-CATTAGCGGCGCTTTCCTAAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCG
*
51113129 TTGGGCTTAGGTTTTTTACGGCGCTTTC
65 TTGGGCTTA-GTTTTTTGCGGCGCTTTC
51113157 CGGAAAACAC
Statistics
Matches: 277, Mismatches: 32, Indels: 21
0.84 0.10 0.06
Matches are distributed among these distances:
112 17 0.06
113 83 0.30
114 155 0.56
115 19 0.07
116 3 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (113 bp):
GAGCATTAGCGGCGCTTTCCTAAAAAACGCCACTAAATCCCCGAAAGCTCAGAAAACGGCGTCGT
TGGGCTTAGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCT
Found at i:51113406 original size:27 final size:25
Alignment explanation
Indices: 51113364--51113418 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 25
51113354 ATTTTGGGGG
* *
51113364 GGGGAAAGAATAAGGAGAAAAGGTT
1 GGGGAAAAAATAAGGAAAAAAGGTT
51113389 GGGGAAAAAAGTAGAGGAAAAAAGGTT
1 GGGGAAAAAA-TA-AGGAAAAAAGGTT
51113416 GGG
1 GGG
51113419 CTACAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 9 0.35
26 2 0.08
27 15 0.58
ACGTcount: A:0.47, C:0.00, G:0.42, T:0.11
Consensus pattern (25 bp):
GGGGAAAAAATAAGGAAAAAAGGTT
Found at i:51113964 original size:115 final size:113
Alignment explanation
Indices: 51113595--51114046 Score: 385
Period size: 115 Copynumber: 4.0 Consensus size: 113
51113585 TTTATCAACA
* * * * * * *
51113595 AGCGCCGCTAAATCCCTACATATTGCGGCGTTTGACCGAAAATACCACT-AAAAACCTACA-AAA
1 AGCGCCACTAAATCCCAACATATTGCGGCGTTTTACCAAAAACACCACTAAAAAATC-AAATAAA
* * * * *
51113658 ATGACGTCATTTTGATTAAAACAAAATAACATTTTGCGGCGTTTTTCGGT
65 ACGACGCCGTTTTGATAAAAACAAAATAACTTTTTGCGGCGTTTTT-GGT
* * * * *
51113708 AGCGCCACTAAATCCCAACCTATT-CGGTGTTTTGA-CGAAAACGCCACTAAAAAATCAAATAAC
1 AGCGCCACTAAATCCCAACATATTGCGGCGTTTT-ACCAAAAACACCACTAAAAAATCAAATAAA
* * * * **
51113771 ACGACTCCGTTTTGATTAAAAACAAATTAACCTTTTGCGGTGTTTTTCACCT
65 ACGACGCCGTTTTGA-TAAAAACAAAATAACTTTTTGCGGCGTTTTT--GGT
* * * * *
51113823 TGCGCCGCTAAATCCCGACCTATTGCGGCGTTTTACCAAAAATACCACTAAAAAATCAAATAAAA
1 AGCGCCACTAAATCCCAACATATTGCGGCGTTTTACCAAAAACACCACTAAAAAATCAAATAAAA
* * *
51113888 AGGCGCCGTTTTGATAAAAACAGAATAACTTTTTGCGGCGTTTTTGGT
66 CGACGCCGTTTTGATAAAAACAAAATAACTTTTTGCGGCGTTTTTGGT
* * * * * * * *
51113936 GAAACGCCACTACAGCCCAACATATTGCGGCATTTCACCAAAAACGCCACTAAGAAATCCAATAA
1 --AGCGCCACTAAATCCCAACATATTGCGGCGTTTTACCAAAAACACCACTAAAAAATCAAATAA
* * * * *
51114001 AACGGCCCCGTTTTTG-TTAAAACAAAATGA-TTTTTGCGGAGTTTTT
64 AACGACGCCG-TTTTGATAAAAACAAAATAACTTTTTGCGGCGTTTTT
51114047 AGAAAAATGC
Statistics
Matches: 272, Mismatches: 57, Indels: 19
0.78 0.16 0.05
Matches are distributed among these distances:
112 20 0.07
113 42 0.15
114 42 0.15
115 119 0.44
116 49 0.18
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.27
Consensus pattern (113 bp):
AGCGCCACTAAATCCCAACATATTGCGGCGTTTTACCAAAAACACCACTAAAAAATCAAATAAAA
CGACGCCGTTTTGATAAAAACAAAATAACTTTTTGCGGCGTTTTTGGT
Found at i:51114523 original size:7 final size:7
Alignment explanation
Indices: 51114511--51114773 Score: 115
Period size: 7 Copynumber: 36.9 Consensus size: 7
51114501 ACTAATTAAT
51114511 CTAAACC
1 CTAAACC
51114518 CTAAACCC
1 CTAAA-CC
51114526 CT-AACTC
1 CTAAAC-C
**
51114533 CTATCCC
1 CTAAACC
51114540 CTAAACC
1 CTAAACC
*
51114547 CTAAATC
1 CTAAACC
* *
51114554 ATAAAAC
1 CTAAACC
* *
51114561 ATAAATC
1 CTAAACC
*
51114568 CTAAACT
1 CTAAACC
*
51114575 ATAAACC
1 CTAAACC
*
51114582 CTTAACCC
1 C-TAAACC
51114590 CTAAACC
1 CTAAACC
*
51114597 TTAAACC
1 CTAAACC
*
51114604 C-CAACC
1 CTAAACC
51114610 CTTAAACC
1 C-TAAACC
*
51114618 CTAAACT
1 CTAAACC
*
51114625 GTAAACC
1 CTAAACC
* *
51114632 ATAATCC
1 CTAAACC
*
51114639 ATAAACC
1 CTAAACC
*
51114646 TTAAA--
1 CTAAACC
*
51114651 ATAGTAACTC
1 CTA--AAC-C
51114661 CTAAACC
1 CTAAACC
*
51114668 TTAAACC
1 CTAAACC
51114675 CTAAACC
1 CTAAACC
* *
51114682 ATAATCC
1 CTAAACC
51114689 CTAAACC
1 CTAAACC
*
51114696 CATAATCC
1 C-TAAACC
* *
51114704 ATGAACC
1 CTAAACC
*
51114711 TTAAA--
1 CTAAACC
*
51114716 ATAGTAACTC
1 CTA--AAC-C
51114726 CTAAACC
1 CTAAACC
*
51114733 TTAAACC
1 CTAAACC
51114740 CTAAACC
1 CTAAACC
* *
51114747 ATATACC
1 CTAAACC
51114754 CTAAACC
1 CTAAACC
51114761 CTAAACC
1 CTAAACC
51114768 CTAAAC
1 CTAAAC
51114774 TATAATGATA
Statistics
Matches: 190, Mismatches: 49, Indels: 34
0.70 0.18 0.12
Matches are distributed among these distances:
5 4 0.02
6 6 0.03
7 149 0.78
8 27 0.14
10 4 0.02
ACGTcount: A:0.43, C:0.34, G:0.02, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:51114635 original size:71 final size:72
Alignment explanation
Indices: 51114541--51114759 Score: 199
Period size: 65 Copynumber: 3.2 Consensus size: 72
51114531 TCCTATCCCC
* **
51114541 TAAACCCTAAA-TCATAAAACATAAATCC-TAAA-CTATAAACCCTTAACCCCTAAACCTTAAAC
1 TAAACCCTAAACTCATAAAACAT-AATCCATAAACCT-TAAAACAGTAACCCCTAAACCTTAAAC
* *
51114603 CCCAACCCT
64 CCCAAACCA
* * * *
51114612 TAAACCCTAAACT-GTAAACCATAATCCATAAACCTTAAAATAGTAACTCCTAAACCTTAAACCC
1 TAAACCCTAAACTCATAAAACATAATCCATAAACCTTAAAACAGTAACCCCTAAACCTTAAACCC
*
51114676 TAAACCA
66 CAAACCA
* * * *
51114683 TAATCCCTAAAC-C------CATAATCCATGAACCTTAAAATAGTAACTCCTAAACCTTAAACCC
1 TAAACCCTAAACTCATAAAACATAATCCATAAACCTTAAAACAGTAACCCCTAAACCTTAAACCC
*
51114741 TAAACCA
66 CAAACCA
*
51114748 TATACCCTAAAC
1 TAAACCCTAAAC
51114760 CCTAAACCCT
Statistics
Matches: 130, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
65 61 0.47
70 5 0.04
71 61 0.47
72 3 0.02
ACGTcount: A:0.45, C:0.31, G:0.02, T:0.22
Consensus pattern (72 bp):
TAAACCCTAAACTCATAAAACATAATCCATAAACCTTAAAACAGTAACCCCTAAACCTTAAACCC
CAAACCA
Found at i:51114711 original size:65 final size:65
Alignment explanation
Indices: 51114626--51114761 Score: 240
Period size: 65 Copynumber: 2.1 Consensus size: 65
51114616 CCCTAAACTG
51114626 TAAA-CCATAATCCATAAACCTTAAAATAGTAACTCCTAAACCTTAAACCCTAAACCATA-ATCC
1 TAAACCCATAATCCATAAACCTTAAAATAGTAACTCCTAAACCTTAAACCCTAAACCATATA-CC
51114689 C
65 C
*
51114690 TAAACCCATAATCCATGAACCTTAAAATAGTAACTCCTAAACCTTAAACCCTAAACCATATACCC
1 TAAACCCATAATCCATAAACCTTAAAATAGTAACTCCTAAACCTTAAACCCTAAACCATATACCC
51114755 TAAACCC
1 TAAACCC
51114762 TAAACCCTAA
Statistics
Matches: 69, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
64 4 0.06
65 64 0.93
66 1 0.01
ACGTcount: A:0.44, C:0.31, G:0.02, T:0.23
Consensus pattern (65 bp):
TAAACCCATAATCCATAAACCTTAAAATAGTAACTCCTAAACCTTAAACCCTAAACCATATACCC
Found at i:51114715 original size:22 final size:21
Alignment explanation
Indices: 51114626--51114760 Score: 94
Period size: 22 Copynumber: 6.3 Consensus size: 21
51114616 CCCTAAACTG
51114626 TAAACCATAATCCATAAACCT
1 TAAACCATAATCCATAAACCT
**
51114647 TAAAATAGTAACTCC-TAAACCT
1 TAAACCA-TAA-TCCATAAACCT
* * * *
51114669 TAAACCCTAAACCATAATCCC
1 TAAACCATAATCCATAAACCT
*
51114690 TAAACCCATAATCCATGAACCT
1 TAAA-CCATAATCCATAAACCT
**
51114712 TAAAATAGTAACTCC-TAAACCT
1 TAAACCA-TAA-TCCATAAACCT
* * * *
51114734 TAAACCCTAAACCATATACCC
1 TAAACCATAATCCATAAACCT
51114755 TAAACC
1 TAAACC
51114761 CTAAACCCTA
Statistics
Matches: 85, Mismatches: 22, Indels: 14
0.70 0.18 0.12
Matches are distributed among these distances:
20 4 0.05
21 32 0.38
22 43 0.51
23 6 0.07
ACGTcount: A:0.44, C:0.30, G:0.02, T:0.23
Consensus pattern (21 bp):
TAAACCATAATCCATAAACCT
Found at i:51117828 original size:20 final size:20
Alignment explanation
Indices: 51117800--51117839 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
51117790 TTTTACATTA
*
51117800 ATTTTCTTTTTCTTT-TTTCT
1 ATTTGCTTTTT-TTTCTTTCT
51117820 ATTTGCTTTTTTTTCTTTCT
1 ATTTGCTTTTTTTTCTTTCT
51117840 TCTTCTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.05, C:0.15, G:0.03, T:0.78
Consensus pattern (20 bp):
ATTTGCTTTTTTTTCTTTCT
Found at i:51133503 original size:41 final size:41
Alignment explanation
Indices: 51133445--51133840 Score: 684
Period size: 41 Copynumber: 9.6 Consensus size: 41
51133435 CTTAATTTAA
* *
51133445 CAGATTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGA-TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
*
51133487 CAGATCACCGACACTTAGCCTGCTAGGTTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
* * *
51133528 CAGATCACTGGCACTTAGCCCGCTAGGTTCATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
*
51133569 CAGATCACCAGCACTTAGCCTGCTAGGTTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
51133610 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
51133651 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
**
51133692 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAATTTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
*
51133733 CAGATCATCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
*
51133774 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACTTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
51133815 CAGATCACCGGCACTTAGCCTGCTAG
1 CAGATCACCGGCACTTAGCCTGCTAG
51133841 ACGTATTGTC
Statistics
Matches: 335, Mismatches: 19, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
41 331 0.99
42 4 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT
Found at i:51137497 original size:13 final size:13
Alignment explanation
Indices: 51137479--51137511 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
51137469 CTAGGAATGT
51137479 AAAGAAAGGAAAA
1 AAAGAAAGGAAAA
*
51137492 AAAGAAAAGAAAA
1 AAAGAAAGGAAAA
51137505 AAA-AAAG
1 AAAGAAAG
51137512 AAGAGATGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 3 0.17
13 15 0.83
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
AAAGAAAGGAAAA
Found at i:51137878 original size:30 final size:30
Alignment explanation
Indices: 51137842--51137908 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
51137832 TCATCGCTAA
*
51137842 CCATTTTCTGTTAAAGACGTAACGAAGTTG
1 CCATTTTCCGTTAAAGACGTAACGAAGTTG
** * *
51137872 CCATTTTCCGTTGTAGACTTAACGGAGTTG
1 CCATTTTCCGTTAAAGACGTAACGAAGTTG
51137902 CCATTTT
1 CCATTTT
51137909 TCATCCTTCT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.37
Consensus pattern (30 bp):
CCATTTTCCGTTAAAGACGTAACGAAGTTG
Found at i:51137957 original size:6 final size:6
Alignment explanation
Indices: 51137923--51138000 Score: 51
Period size: 6 Copynumber: 14.0 Consensus size: 6
51137913 CCTTCTTTCC
* * *
51137923 CCCTC- CCCTCC CCCTCC CCCTCT CCCTCT CCCTCT -CGTCT CCCTC-
1 CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT
* * * *
51137968 CCCT-T ACCACT -GCTCT CCC-AT CCCTCT CCCTCT
1 CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT
51138001 TCCCCACCAT
Statistics
Matches: 57, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
5 22 0.39
6 35 0.61
ACGTcount: A:0.04, C:0.65, G:0.03, T:0.28
Consensus pattern (6 bp):
CCCTCT
Found at i:51138843 original size:30 final size:30
Alignment explanation
Indices: 51138775--51138843 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
51138765 GAGAAGGATG
* *
51138775 GAAAATGGAAACTTCGTTAAGTCTGTAACA
1 GAAAATGGTAACTCCGTTAAGTCTGTAACA
* *
51138805 GAAAATGGTAACTCCGTTACGTTTGTAACA
1 GAAAATGGTAACTCCGTTAAGTCTGTAACA
*
51138835 GGAAATGGT
1 GAAAATGGT
51138844 TAGTGGTGAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (30 bp):
GAAAATGGTAACTCCGTTAAGTCTGTAACA
Found at i:51143222 original size:20 final size:20
Alignment explanation
Indices: 51143197--51143240 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
51143187 GGTGTGTAAG
51143197 GTTCCAAAGGCTTCCATTTC
1 GTTCCAAAGGCTTCCATTTC
*
51143217 GTTCCAAAGGCTTCCCTTTC
1 GTTCCAAAGGCTTCCATTTC
51143237 GTTC
1 GTTC
51143241 AATTGCGGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (20 bp):
GTTCCAAAGGCTTCCATTTC
Found at i:51143532 original size:76 final size:76
Alignment explanation
Indices: 51143440--51143604 Score: 267
Period size: 76 Copynumber: 2.2 Consensus size: 76
51143430 TATCTCCCGT
* *
51143440 ACATAAAGGTATCGTCGATTTGTACCAGTGGCTTGTAGTATTGGAATGCCTGTCGACATTGCATC
1 ACATAAAGGTACCGTCGATTTGTACCAGGGGCTTGTAGTATTGGAATGCCTGTCGACATTGCATC
*
51143505 AGATATCCCAC
66 AAATATCCCAC
* *
51143516 ATATAAAGGTACCGTCGATTTGTACCAGGGGCTTGTAGTATTGGGATGCCTGTCGACATTGCATC
1 ACATAAAGGTACCGTCGATTTGTACCAGGGGCTTGTAGTATTGGAATGCCTGTCGACATTGCATC
**
51143581 AAATATCCCGT
66 AAATATCCCAC
51143592 ACATAAAGGTACC
1 ACATAAAGGTACC
51143605 ATCCTGCGTG
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
76 81 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (76 bp):
ACATAAAGGTACCGTCGATTTGTACCAGGGGCTTGTAGTATTGGAATGCCTGTCGACATTGCATC
AAATATCCCAC
Found at i:51143887 original size:17 final size:16
Alignment explanation
Indices: 51143865--51143906 Score: 59
Period size: 15 Copynumber: 2.6 Consensus size: 16
51143855 CTAATAATTC
51143865 AAATATACGATTGGTGT
1 AAATAT-CGATTGGTGT
*
51143882 AAATAT-GATTGTTGT
1 AAATATCGATTGGTGT
51143897 AAATATCGAT
1 AAATATCGAT
51143907 GTAAGTAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 14 0.61
16 3 0.13
17 6 0.26
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.38
Consensus pattern (16 bp):
AAATATCGATTGGTGT
Found at i:51146156 original size:9 final size:9
Alignment explanation
Indices: 51146142--51146171 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
51146132 TCCATTAATG
*
51146142 AGATATTGA
1 AGATATTAA
51146151 AGATATTAA
1 AGATATTAA
51146160 AGATATTAA
1 AGATATTAA
51146169 AGA
1 AGA
51146172 ATCGTTCCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.30
Consensus pattern (9 bp):
AGATATTAA
Found at i:51149789 original size:9 final size:9
Alignment explanation
Indices: 51149775--51149811 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
51149765 TATAGTTTGA
51149775 TATTCGAAT
1 TATTCGAAT
51149784 TATTCGAAT
1 TATTCGAAT
*
51149793 TATTCGAGT
1 TATTCGAAT
51149802 TATTCGAAT
1 TATTCGAAT
51149811 T
1 T
51149812 CGAAAACTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:51149881 original size:9 final size:9
Alignment explanation
Indices: 51149864--51149894 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
51149854 TCGAGTTGAT
51149864 TCGAATAAC
1 TCGAATAAC
*
51149873 TCGATTAAC
1 TCGAATAAC
51149882 TCGAATAAC
1 TCGAATAAC
51149891 TCGA
1 TCGA
51149895 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:51152102 original size:43 final size:43
Alignment explanation
Indices: 51152003--51152150 Score: 151
Period size: 43 Copynumber: 3.5 Consensus size: 43
51151993 TAGGGTTATC
* * * * *
51152003 GAGATTACGTGTAAGAACATATCTGGGATA-TGGAATCAATAT
1 GAGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATAT
51152045 GAGAATT-CGTGTAAGACCATGTCTGGGACATTGGCATCGATAT
1 GAG-ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATAT
* * * *
51152088 GTGATTTCGTGTAAGACCAATG-CCGGG-CTATTGGCATCGATAC
1 GAGATTACGTGTAAGACC-ATGTCTGGGAC-ATTGGCATCGATAT
*
51152131 GAGATTACATGTAAGACCAT
1 GAGATTACGTGTAAGACCAT
51152151 ATCTAGGATA
Statistics
Matches: 90, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
42 29 0.32
43 58 0.64
44 3 0.03
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.28
Consensus pattern (43 bp):
GAGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATAT
Found at i:51157105 original size:14 final size:14
Alignment explanation
Indices: 51157086--51157120 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
51157076 ATATATCAAA
51157086 TAATTTTCTCACCC
1 TAATTTTCTCACCC
51157100 TAATTTTCTCACCC
1 TAATTTTCTCACCC
51157114 TAATTTT
1 TAATTTT
51157121 AACCGTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.23, C:0.29, G:0.00, T:0.49
Consensus pattern (14 bp):
TAATTTTCTCACCC
Found at i:51157263 original size:6 final size:6
Alignment explanation
Indices: 51157245--51157294 Score: 55
Period size: 6 Copynumber: 8.2 Consensus size: 6
51157235 TGCAAATAAG
* * * *
51157245 TCATTT CTCATTT TCATTT CCATTT CCATTT CCATTT TCATTT CCATTT
1 TCATTT -TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT
51157294 T
1 T
51157295 GAGAAAATCA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
6 33 0.85
7 6 0.15
ACGTcount: A:0.16, C:0.26, G:0.00, T:0.58
Consensus pattern (6 bp):
TCATTT
Found at i:51157274 original size:12 final size:12
Alignment explanation
Indices: 51157245--51157294 Score: 82
Period size: 12 Copynumber: 4.1 Consensus size: 12
51157235 TGCAAATAAG
51157245 TCATTTCTCATTT
1 TCATTTC-CATTT
51157258 TCATTTCCATTT
1 TCATTTCCATTT
*
51157270 CCATTTCCATTT
1 TCATTTCCATTT
51157282 TCATTTCCATTT
1 TCATTTCCATTT
51157294 T
1 T
51157295 GAGAAAATCA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
12 28 0.80
13 7 0.20
ACGTcount: A:0.16, C:0.26, G:0.00, T:0.58
Consensus pattern (12 bp):
TCATTTCCATTT
Found at i:51157280 original size:18 final size:18
Alignment explanation
Indices: 51157246--51157293 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
51157236 GCAAATAAGT
*
51157246 CATTTCTCATTTTCATTTC
1 CATTTC-CATTTCCATTTC
*
51157265 CATTTCCATTTCCATTTT
1 CATTTCCATTTCCATTTC
51157283 CATTTCCATTT
1 CATTTCCATTT
51157294 TGAGAAAATC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 21 0.78
19 6 0.22
ACGTcount: A:0.17, C:0.27, G:0.00, T:0.56
Consensus pattern (18 bp):
CATTTCCATTTCCATTTC
Found at i:51159536 original size:40 final size:40
Alignment explanation
Indices: 51159481--51159563 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
51159471 ACCTTGTATG
51159481 TATGATTATATTGGCAATATTGCATGGTGGATTCATTGGA
1 TATGATTATATTGGCAATATTGCATGGTGGATTCATTGGA
51159521 TATGATTATATTGGCAATATTGCATGGTGGATTCATTGGA
1 TATGATTATATTGGCAATATTGCATGGTGGATTCATTGGA
51159561 TAT
1 TAT
51159564 AGTTGGCATG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.28, C:0.07, G:0.24, T:0.41
Consensus pattern (40 bp):
TATGATTATATTGGCAATATTGCATGGTGGATTCATTGGA
Found at i:51160218 original size:12 final size:12
Alignment explanation
Indices: 51160203--51160228 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51160193 GTAATGGACA
51160203 TTGGACATTTAT
1 TTGGACATTTAT
51160215 TTGGACATTTAT
1 TTGGACATTTAT
51160227 TT
1 TT
51160229 TGGTGATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (12 bp):
TTGGACATTTAT
Found at i:51169239 original size:188 final size:188
Alignment explanation
Indices: 51168920--51169295 Score: 662
Period size: 188 Copynumber: 2.0 Consensus size: 188
51168910 TGTAGATTTT
51168920 GTTAACTATCTAGTGTGTAGAAAACTCCCATTGGGTGTCACAAGCCATAAAAAAGAAAGATTTAT
1 GTTAACTATCTAGTGTGTAGAAAACTCCCATTGGGTGTCACAAGCCATAAAAAAGAAAGATTTAT
* * *
51168985 TCGTGACATAATGAAGTATCATTGGATCGAGCCGTATTTATTCAAAGTATGCAATGACAGTATCA
66 TCGTGACATAATGAAGTATCATTGGAACAAGCCGTATTTATTCAAAGTATGCAATGACAATATCA
51169050 TTCGACTCTGTGTTCCGGAAGAAGAGATGCTTTCAATCCTAAAGCATTGTCATGATGC
131 TTCGACTCTGTGTTCCGGAAGAAGAGATGCTTTCAATCCTAAAGCATTGTCATGATGC
* *
51169108 GTTAACTATCTAGTGTGTAGAAAACTCCCATTGGGTGTCACAGGCCATAAAAAAGAAAGATTTCT
1 GTTAACTATCTAGTGTGTAGAAAACTCCCATTGGGTGTCACAAGCCATAAAAAAGAAAGATTTAT
* *
51169173 TTGTGACATAATGAAGTATCATTGGAACAAGCTGTATTTATTCAAAGTATGCAATGACAATATCA
66 TCGTGACATAATGAAGTATCATTGGAACAAGCCGTATTTATTCAAAGTATGCAATGACAATATCA
* * *
51169238 TTTGACTTTGTGTTCCGGAAGAAGAGATGCTTTCAATCCTGAAGCATTGTCATGATGC
131 TTCGACTCTGTGTTCCGGAAGAAGAGATGCTTTCAATCCTAAAGCATTGTCATGATGC
51169296 TCCTTATGGA
Statistics
Matches: 178, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
188 178 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (188 bp):
GTTAACTATCTAGTGTGTAGAAAACTCCCATTGGGTGTCACAAGCCATAAAAAAGAAAGATTTAT
TCGTGACATAATGAAGTATCATTGGAACAAGCCGTATTTATTCAAAGTATGCAATGACAATATCA
TTCGACTCTGTGTTCCGGAAGAAGAGATGCTTTCAATCCTAAAGCATTGTCATGATGC
Found at i:51172195 original size:18 final size:19
Alignment explanation
Indices: 51172172--51172218 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
51172162 TTGGAGCTAC
51172172 AGAAGAAGAAGTTGTTG-T
1 AGAAGAAGAAGTTGTTGCT
* *
51172190 AGAAGAGGAAATTGTTGCT
1 AGAAGAAGAAGTTGTTGCT
51172209 -GAAGAAGAAG
1 AGAAGAAGAAG
51172219 AAATTGCTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 23 0.96
19 1 0.04
ACGTcount: A:0.43, C:0.02, G:0.34, T:0.21
Consensus pattern (19 bp):
AGAAGAAGAAGTTGTTGCT
Found at i:51176539 original size:47 final size:48
Alignment explanation
Indices: 51176480--51176578 Score: 137
Period size: 47 Copynumber: 2.1 Consensus size: 48
51176470 AACTAACATT
* * *
51176480 TGTTCTGGCAGCTTGACTGCAATTCTGGTGGC-TTGACCACGTATATC
1 TGTTCTGACAGCTTGACTACAATTCTGGTGGCTTTGACCACATATATC
* * *
51176527 TGTTCTGACAGCTTGACTACAATTTTGGTGGCTTTGTCCACATATATT
1 TGTTCTGACAGCTTGACTACAATTCTGGTGGCTTTGACCACATATATC
51176575 TGTT
1 TGTT
51176579 GGTGTGTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
47 29 0.64
48 16 0.36
ACGTcount: A:0.18, C:0.20, G:0.22, T:0.39
Consensus pattern (48 bp):
TGTTCTGACAGCTTGACTACAATTCTGGTGGCTTTGACCACATATATC
Found at i:51177527 original size:94 final size:94
Alignment explanation
Indices: 51177414--51177606 Score: 280
Period size: 94 Copynumber: 2.1 Consensus size: 94
51177404 GGGGGTTACA
* * *
51177414 ACAACCTAAGTTTATTGATTTATGATCATGAACAATC-TTCTTTGAGTTAGCTGATTTACAATCA
1 ACAACCTAAGTTAATTGATTTACGATCATGAACAATCTTTC-TTAAGTTAGCTGATTTACAATCA
*
51177478 CAACTCCAAATAGCTCTTTGATTTACAATC
65 CAACTCCAAATAGCTCATTGATTTACAATC
* * * *
51177508 ACAACCTAAGTTAATTGATTTACGATCATGAACAATCTTTCTTAAGTTAGTTGGTTTACGATCGC
1 ACAACCTAAGTTAATTGATTTACGATCATGAACAATCTTTCTTAAGTTAGCTGATTTACAATCAC
**
51177573 AACTCCAAATAGCTCATTGATTTATGATC
66 AACTCCAAATAGCTCATTGATTTACAATC
51177602 ACAAC
1 ACAAC
51177607 TGATATTATT
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
94 85 0.97
95 3 0.03
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (94 bp):
ACAACCTAAGTTAATTGATTTACGATCATGAACAATCTTTCTTAAGTTAGCTGATTTACAATCAC
AACTCCAAATAGCTCATTGATTTACAATC
Found at i:51177655 original size:130 final size:130
Alignment explanation
Indices: 51177495--51177768 Score: 354
Period size: 130 Copynumber: 2.1 Consensus size: 130
51177485 AAATAGCTCT
* *
51177495 TTGATTTACAATCACAACCTAAGTTAATTGATTTACGATCATGAACAATCTT-TCTTAAGTTAGT
1 TTGATTTACAATCACAACCTAAGTTAATTGATTTACGATCATGAACAATCTTCTC-CAAGTTAGC
*** * * *
51177559 TGGTTTAC-GATCGCAACTCCAAATAGCTCATTGATTTATGATCACAACTGATATTATTAAGACT
65 TAACTTACAG-TCGCAACTCCAAACAGCTCACTAATTTATGATCACAACTGATATTATTAAGACT
51177623 TG
129 TG
* * * *
51177625 TTGATTTACGATCACAACCTAAGTTCATTGATTTACGATCATGAATAGTCTTCTCCAAGTTAGCT
1 TTGATTTACAATCACAACCTAAGTTAATTGATTTACGATCATGAACAATCTTCTCCAAGTTAGCT
** * *
51177690 AACTTACAGTCGCAACTCCAAACAGCTTGCTAATTTATGATCACAACTGATATTATTAAGGCTCG
66 AACTTACAGTCGCAACTCCAAACAGCTCACTAATTTATGATCACAACTGATATTATTAAGACTTG
* *
51177755 CTGATTTATAATCA
1 TTGATTTACAATCA
51177769 TGAATAATCT
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
130 120 0.98
131 3 0.02
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (130 bp):
TTGATTTACAATCACAACCTAAGTTAATTGATTTACGATCATGAACAATCTTCTCCAAGTTAGCT
AACTTACAGTCGCAACTCCAAACAGCTCACTAATTTATGATCACAACTGATATTATTAAGACTTG
Found at i:51177665 original size:63 final size:63
Alignment explanation
Indices: 51177495--51177666 Score: 161
Period size: 67 Copynumber: 2.7 Consensus size: 63
51177485 AAATAGCTCT
* * * * *
51177495 TTGATTTACAATCACAACCTAAGTTAATTGATTTACGATCATGAACAATCTTTCTTAAGTTAG
1 TTGATTTACGATCACAACCTAAGTTCATTGATTTACGATCATCAACAATCATTATTAAGTTAG
* * * * * *
51177558 TTGGTTTACGATCGCAACTCCAAATAGCTCATTGATTTATGATCA-CAACTGAT-ATTATTAAGA
1 TTGATTTACGATCACAA--CC-TA-AGTTCATTGATTTACGATCATCAAC-AATCATTATTAAG-
51177621 CTT-G
60 -TTAG
51177625 TTGATTTACGATCACAACCTAAGTTCATTGATTTACGATCAT
1 TTGATTTACGATCACAACCTAAGTTCATTGATTTACGATCAT
51177667 GAATAGTCTT
Statistics
Matches: 85, Mismatches: 16, Indels: 15
0.73 0.14 0.13
Matches are distributed among these distances:
63 32 0.38
64 1 0.01
65 4 0.05
66 11 0.13
67 35 0.41
68 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (63 bp):
TTGATTTACGATCACAACCTAAGTTCATTGATTTACGATCATCAACAATCATTATTAAGTTAG
Found at i:51178738 original size:21 final size:20
Alignment explanation
Indices: 51178692--51178738 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 20
51178682 CCTCTAGCCA
51178692 TTTATTTTGATTCACCAATT
1 TTTATTTTGATTCACCAATT
*
51178712 TCTTATTTT-CTTCAACCAATT
1 T-TTATTTTGATTC-ACCAATT
51178733 GTTTAT
1 -TTTAT
51178739 ACAGTTCACG
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 4 0.17
21 18 0.78
22 1 0.04
ACGTcount: A:0.23, C:0.17, G:0.04, T:0.55
Consensus pattern (20 bp):
TTTATTTTGATTCACCAATT
Found at i:51179733 original size:20 final size:20
Alignment explanation
Indices: 51179691--51179746 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
51179681 CTAGTATCGT
* * *
51179691 AGATAAACTGCCAATAATGC
1 AGATAAACTACCAGTATTGC
*
51179711 AGA-AAAGCTACTAGTATTGC
1 AGATAAA-CTACCAGTATTGC
51179731 AGATAAACTACCAGTA
1 AGATAAACTACCAGTA
51179747 ATATGGTTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
19 3 0.10
20 23 0.79
21 3 0.10
ACGTcount: A:0.45, C:0.18, G:0.16, T:0.21
Consensus pattern (20 bp):
AGATAAACTACCAGTATTGC
Found at i:51197024 original size:6 final size:6
Alignment explanation
Indices: 51197015--51197041 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
51197005 TATAAAAATA
51197015 AAATTT AAATTT AAATTT AAATTT AAA
1 AAATTT AAATTT AAATTT AAATTT AAA
51197042 AACATTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (6 bp):
AAATTT
Found at i:51197583 original size:22 final size:22
Alignment explanation
Indices: 51197542--51197604 Score: 76
Period size: 22 Copynumber: 2.8 Consensus size: 22
51197532 CTAATCCTCT
*
51197542 CAAATTTCT-TCTAAATTTCCTTT
1 CAAATTTCTCTC-AAA-TTCCTTC
51197565 C-AATTTGCTCTCAAATTCCTTC
1 CAAATTT-CTCTCAAATTCCTTC
51197587 CAAATTTCTCTCAAATTC
1 CAAATTTCTCTCAAATTC
51197605 ATATTTAATC
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
22 23 0.64
23 11 0.31
24 2 0.06
ACGTcount: A:0.27, C:0.27, G:0.02, T:0.44
Consensus pattern (22 bp):
CAAATTTCTCTCAAATTCCTTC
Found at i:51197601 original size:11 final size:11
Alignment explanation
Indices: 51197538--51197603 Score: 57
Period size: 11 Copynumber: 5.9 Consensus size: 11
51197528 CAAACTAATC
51197538 CTCTCAAATTT
1 CTCTCAAATTT
51197549 CT-TCTAAATTT
1 CTCTC-AAATTT
*
51197560 CCTTTC-AATTT
1 -CTCTCAAATTT
*
51197571 GCTCTCAAATTC
1 -CTCTCAAATTT
51197583 CT-TCCAAATTT
1 CTCT-CAAATTT
51197594 CTCTCAAATT
1 CTCTCAAATT
51197604 CATATTTAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
10 3 0.07
11 33 0.73
12 7 0.16
13 2 0.04
ACGTcount: A:0.26, C:0.27, G:0.02, T:0.45
Consensus pattern (11 bp):
CTCTCAAATTT
Found at i:51198816 original size:7 final size:7
Alignment explanation
Indices: 51198804--51198829 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
51198794 TAGTCGATTG
51198804 GTATTTA
1 GTATTTA
51198811 GTATTTA
1 GTATTTA
51198818 GTATTTA
1 GTATTTA
51198825 GTATT
1 GTATT
51198830 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:51199507 original size:18 final size:18
Alignment explanation
Indices: 51199480--51199514 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51199470 CAGGTGCGTT
* *
51199480 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
51199498 TCCTAACCCTTATATGT
1 TCCTAACCCTTATATGT
51199515 TTTCTTTTCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.29, G:0.09, T:0.43
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:51200125 original size:22 final size:22
Alignment explanation
Indices: 51200087--51200322 Score: 254
Period size: 22 Copynumber: 11.0 Consensus size: 22
51200077 TAAAACCCCT
*
51200087 AACCCT-AA-CCTTTAATTGAAA
1 AACCCTAAACCCTTAAATT-AAA
*
51200108 AACCCT-AACCCTTAAATTTAA
1 AACCCTAAACCCTTAAATTAAA
*
51200129 AACCCTAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAAATTAAA
*
51200151 AACCCTAAACCCTTAAATTTAA
1 AACCCTAAACCCTTAAATTAAA
*
51200173 AACCATAAACCCTTAAATTAAA
1 AACCCTAAACCCTTAAATTAAA
* * *
51200195 AACACTAAACCTTTAACTTAAA
1 AACCCTAAACCCTTAAATTAAA
* * *
51200217 AACCCT-AGCCCTTAACTTTAA
1 AACCCTAAACCCTTAAATTAAA
*
51200238 AACCCTAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAAATTAAA
51200260 AA--CTATAACCCTTAAATT-AA
1 AACCCTA-AACCCTTAAATTAAA
* *
51200280 AACCCTAAACCCTTAACTTTAA
1 AACCCTAAACCCTTAAATTAAA
* *
51200302 AACCGT-AACCCTTAACTTAAA
1 AACCCTAAACCCTTAAATTAAA
51200323 TATAGTTTGA
Statistics
Matches: 186, Mismatches: 22, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
20 7 0.04
21 70 0.38
22 109 0.59
ACGTcount: A:0.45, C:0.28, G:0.01, T:0.26
Consensus pattern (22 bp):
AACCCTAAACCCTTAAATTAAA
Found at i:51200155 original size:43 final size:43
Alignment explanation
Indices: 51200087--51200322 Score: 280
Period size: 43 Copynumber: 5.5 Consensus size: 43
51200077 TAAAACCCCT
*
51200087 AACCCTAACCTTTAA-TTGAAAAACCCT-AACCCTTAAATTTAA
1 AACCCTAACCCTTAACTT-AAAAACCCTAAACCCTTAAATTTAA
51200129 AACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAAATTTAA
1 AACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAAATTTAA
* * * * * *
51200173 AACCATAAACCCTTAAATTAAAAACACTAAACCTTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAAATTTAA
* * * *
51200217 AACCCTAGCCCTTAACTTTAAAACCCTAAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAAATTTAA
** * *
51200260 AACTATAACCCTTAAATT-AAAACCCTAAACCCTTAACTTTAA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAAATTTAA
*
51200302 AACCGTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
51200323 TATAGTTTGA
Statistics
Matches: 169, Mismatches: 21, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
42 44 0.26
43 65 0.38
44 60 0.36
ACGTcount: A:0.45, C:0.28, G:0.01, T:0.26
Consensus pattern (43 bp):
AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAAATTTAA
Found at i:51202179 original size:126 final size:127
Alignment explanation
Indices: 51201942--51202179 Score: 336
Period size: 126 Copynumber: 1.9 Consensus size: 127
51201932 ATTTGACACC
* * *
51201942 ACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACCTACTGTAGCAAAAGTGCGT
1 ACTATTTGCTCAGAAACGTCAACTCAAAATTATTTCTTCCAAGACCTACTGTAGCAAAAGCGCGT
* * * * * *
51202007 CCACGAGGGCGCGATTTCACAAATTCTTTTCAAATAGCATCCTGCTTGCAGCGTTGTTTTAT
66 ACACGAGGGCGCGACTTCAAAAATCCTTCTCAAATAGCATCATGCTTGCAGCGTTGTTTTAT
51202069 ACTATTTGCTCAGAAACGTCAACTCAAAATTATTT-TTCCAAGACCTACTGTAGCAAAAGCGCGT
1 ACTATTTGCTCAGAAACGTCAACTCAAAATTATTTCTTCCAAGACCTACTGTAGCAAAAGCGCGT
* * * *
51202133 AGACGTGGGCGCGACTTCAAAAATCCTTCTGATAA-ATCATCATGCTT
66 ACACGAGGGCGCGACTTCAAAAATCCTTCTCA-AATAGCATCATGCTT
51202180 TGATTTCATC
Statistics
Matches: 97, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
126 61 0.63
127 36 0.37
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (127 bp):
ACTATTTGCTCAGAAACGTCAACTCAAAATTATTTCTTCCAAGACCTACTGTAGCAAAAGCGCGT
ACACGAGGGCGCGACTTCAAAAATCCTTCTCAAATAGCATCATGCTTGCAGCGTTGTTTTAT
Found at i:51202235 original size:10 final size:10
Alignment explanation
Indices: 51202220--51202255 Score: 72
Period size: 10 Copynumber: 3.6 Consensus size: 10
51202210 AACGTAATCC
51202220 AAATTTGAAT
1 AAATTTGAAT
51202230 AAATTTGAAT
1 AAATTTGAAT
51202240 AAATTTGAAT
1 AAATTTGAAT
51202250 AAATTT
1 AAATTT
51202256 AATTACGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (10 bp):
AAATTTGAAT
Found at i:51202323 original size:9 final size:9
Alignment explanation
Indices: 51202306--51202336 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
51202296 TTTTTCTCTG
51202306 AAAACCCTA
1 AAAACCCTA
*
51202315 AAAATCCTA
1 AAAACCCTA
51202324 AAAACCCTA
1 AAAACCCTA
51202333 AAAA
1 AAAA
51202337 TCCGAACGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.61, C:0.26, G:0.00, T:0.13
Consensus pattern (9 bp):
AAAACCCTA
Found at i:51211892 original size:14 final size:14
Alignment explanation
Indices: 51211873--51211903 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
51211863 AGCTTGGCAA
51211873 TTGGGAACTATTTG
1 TTGGGAACTATTTG
51211887 TTGGGAACTATTTG
1 TTGGGAACTATTTG
51211901 TTG
1 TTG
51211904 TTAATATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.06, G:0.29, T:0.45
Consensus pattern (14 bp):
TTGGGAACTATTTG
Found at i:51216265 original size:121 final size:121
Alignment explanation
Indices: 51216004--51216510 Score: 926
Period size: 121 Copynumber: 4.2 Consensus size: 121
51215994 ACTTTCAAGT
51216004 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
51216069 TAATAT-AAGAATATTAATTATTAAGAATTTTATTAAATTATATTGTTCAATTAAA
66 TAATATAAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
51216124 ATATATTTAATCATATATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAA
1 ATATATTTAATAATA-ATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAA
51216189 TTAATATAAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
65 TTAATATAAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
51216246 ATTTATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
51216311 TAATATAAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
* *
51216367 ATTTATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
51216432 TAATATAAAGAATATTAATTATTAAGAATTTTTTTAAATTATATATTTTAATTAAA
66 TAATATAAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
51216488 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
51216511 TAAATATGAT
Statistics
Matches: 376, Mismatches: 9, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
120 14 0.04
121 302 0.80
122 60 0.16
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.48
Consensus pattern (121 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
Found at i:51216722 original size:43 final size:45
Alignment explanation
Indices: 51216659--51216742 Score: 109
Period size: 43 Copynumber: 1.9 Consensus size: 45
51216649 CCTCTATTCC
* *
51216659 ATTCAACCAAACACAAGATTA-C-ATTACGCCTCTATTCCATTAT
1 ATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCATTAT
***
51216702 ATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCA
1 ATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCA
51216743 ATACACCTCT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 18 0.53
44 1 0.03
45 15 0.44
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.29
Consensus pattern (45 bp):
ATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCATTAT
Found at i:51216749 original size:16 final size:16
Alignment explanation
Indices: 51216728--51216796 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
51216718 GATTAGCTAT
51216728 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
51216744 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
51216761 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
51216777 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
51216793 TACA
1 TACA
51216797 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:51216770 original size:33 final size:32
Alignment explanation
Indices: 51216728--51216796 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
51216718 GATTAGCTAT
51216728 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
51216761 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
51216793 TACA
1 TACA
51216797 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:51222109 original size:23 final size:23
Alignment explanation
Indices: 51222079--51222125 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
51222069 TGAATTGAGT
51222079 TAAATTCATTCGTAAAGATTCAG
1 TAAATTCATTCGTAAAGATTCAG
*
51222102 TAAATTCATTCGTACAGATTCAG
1 TAAATTCATTCGTAAAGATTCAG
51222125 T
1 T
51222126 TAGACATCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (23 bp):
TAAATTCATTCGTAAAGATTCAG
Found at i:51222417 original size:25 final size:24
Alignment explanation
Indices: 51222389--51222479 Score: 67
Period size: 25 Copynumber: 3.6 Consensus size: 24
51222379 TACCGATTTT
* *
51222389 AGCTCGTATGAGCTTACTGATATTG
1 AGCTCG-AGGAGCTTACTGATATTC
* * * * *
51222414 AGCTCACATGAGCTTACCGTTATTT
1 AGCTC-GAGGAGCTTACTGATATTC
51222439 AGCTCAGAGGAGCTTACT-ATTATTC
1 AGCTC-GAGGAGCTTACTGA-TATTC
51222464 AGCTCGGAGGAGCTTA
1 AGCTC-GAGGAGCTTA
51222480 TCGTTTATAG
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
25 54 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (24 bp):
AGCTCGAGGAGCTTACTGATATTC
Found at i:51222735 original size:22 final size:24
Alignment explanation
Indices: 51222695--51222739 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 24
51222685 GTGATGTTAC
51222695 ATAATACATTGATATATGAAATGA
1 ATAATACATTGATATATGAAATGA
51222719 ATAATACA-TG-TATATGAAATG
1 ATAATACATTGATATATGAAATG
51222740 TGATTACTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 11 0.52
23 2 0.10
24 8 0.38
ACGTcount: A:0.49, C:0.04, G:0.13, T:0.33
Consensus pattern (24 bp):
ATAATACATTGATATATGAAATGA
Found at i:51236225 original size:19 final size:19
Alignment explanation
Indices: 51236201--51236254 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
51236191 AATCATATCT
51236201 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
51236220 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
51236239 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
51236255 CTTGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:51236250 original size:38 final size:40
Alignment explanation
Indices: 51236178--51236254 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
51236168 AAATTAAATC
51236178 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTACAAAATCATA--TTCTAAGATTGCATATCATA
*
51236220 TCTAAGATTAC-ATATCATA-TCTAAGATTGCATATC
1 TCTAAGATTACAAAATCATATTCTAAGATTGCATATC
51236255 CTTGAAGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 16 0.47
41 7 0.21
42 11 0.32
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (40 bp):
TCTAAGATTACAAAATCATATTCTAAGATTGCATATCATA
Found at i:51240444 original size:42 final size:43
Alignment explanation
Indices: 51240339--51240478 Score: 169
Period size: 43 Copynumber: 3.3 Consensus size: 43
51240329 TTCCAAAAAT
* *
51240339 AAACGCCGCTAAAGATCATGACCTTTAGCGGCG-TTTGTGGGTA-
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTT-T-GCTAC
* * *
51240382 AAGCGCCGCTAAAGACCATGACCTTTAGCGGCGCATTT-CTAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTGCTAC
* * *
51240424 AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTGCTAC
51240467 AAACGCCGCTAA
1 AAACGCCGCTAA
51240479 CTATAGGTCA
Statistics
Matches: 85, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
41 2 0.02
42 34 0.40
43 47 0.55
44 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTGCTAC
Found at i:51242663 original size:40 final size:38
Alignment explanation
Indices: 51242599--51242673 Score: 105
Period size: 40 Copynumber: 1.9 Consensus size: 38
51242589 ATTATGTATA
** *
51242599 ATTAACATATAAAATAGTACAAATTAAAACTAAAAAAAAT
1 ATTAACATATAAAATAAAAAAAATT-AAA-TAAAAAAAAT
51242639 ATTAACATATAAAATAAAAAAAATTAAATAAAAAA
1 ATTAACATATAAAATAAAAAAAATTAAATAAAAAA
51242674 GTTTTTCTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
38 7 0.22
39 3 0.09
40 22 0.69
ACGTcount: A:0.69, C:0.05, G:0.01, T:0.24
Consensus pattern (38 bp):
ATTAACATATAAAATAAAAAAAATTAAATAAAAAAAAT
Found at i:51242664 original size:22 final size:22
Alignment explanation
Indices: 51242631--51242673 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
51242621 ATTAAAACTA
*
51242631 AAAAAAATATTAACATATAAAAT
1 AAAAAAATATTAA-ATAAAAAAT
51242654 AAAAAAA-ATTAAATAAAAAA
1 AAAAAAATATTAAATAAAAAA
51242674 GTTTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 5 0.26
23 7 0.37
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (22 bp):
AAAAAAATATTAAATAAAAAAT
Found at i:51244286 original size:114 final size:114
Alignment explanation
Indices: 51243951--51244704 Score: 1023
Period size: 114 Copynumber: 6.6 Consensus size: 114
51243941 GACCTTCGAC
51243951 AAACGCCGCTAAAGCACACCATTAGCGGCGCATTATACAAAGCGCCGC-AAAAATCTTAACCAAA
1 AAACGCCGCTAAAGCACACCATTAGCGGCGCATTATACAAAGCGCCGCAAAAAATCTTAACCAAA
* * * *
51244015 ACGCATCGTTTTGGGTTGAGGTATATTAGAATTAGTGGCGCTTAAGGAT
66 ACGCATCGTTCTGGGTTGAGGTATTTTAGAATTAGTGGCGCTTAAGTAA
* * * * *
51244064 AAATGCCGCTAAAGCACACCATTAGCGGCGCATTAGAGAGAGCGCCGC-AAAAATCATAACCAAA
1 AAACGCCGCTAAAGCACACCATTAGCGGCGCATTATACAAAGCGCCGCAAAAAATCTTAACCAAA
51244128 ACGCATCGTTCTGGGTTGAGGTATTTTAGAATTAGTGGCGCTTAAGTAA
66 ACGCATCGTTCTGGGTTGAGGTATTTTAGAATTAGTGGCGCTTAAGTAA
* * *
51244177 AAACGCCGCTAAAGTAGACCATTAGCGGCGCATAATACAAAGCGCCGCAAAAAATCTTAACCAAA
1 AAACGCCGCTAAAGCACACCATTAGCGGCGCATTATACAAAGCGCCGCAAAAAATCTTAACCAAA
* * * *
51244242 ACGCATCGTTCTGGGTTGATGTAATTTAGAATTACTGGCGCTTAACTAA
66 ACGCATCGTTCTGGGTTGAGGTATTTTAGAATTAGTGGCGCTTAAGTAA
** ** * *
51244291 AAACGCCGCGGAAGCACACCATTAGCGGCGCATCGTACAAAGCGACGCAAAAAGTCTTAACCAAA
1 AAACGCCGCTAAAGCACACCATTAGCGGCGCATTATACAAAGCGCCGCAAAAAATCTTAACCAAA
* * *
51244356 ACGCATCGTTCTGGGTTGATGTATTTTAGAATTAGTGGCGCTTGACTAA
66 ACGCATCGTTCTGGGTTGAGGTATTTTAGAATTAGTGGCGCTTAAGTAA
** * *
51244405 AAACGCCGGAAAAGCACACCATTAGCGGCGCATCATTCAAAGCGCCGCAAAAAATCTTAACCAAA
1 AAACGCCGCTAAAGCACACCATTAGCGGCGCATTATACAAAGCGCCGCAAAAAATCTTAACCAAA
* * * *
51244470 ACGCATCGTTTTGGGTTGAGGTATTTTAGATTTAGTGGCGCTTAAGGAT
66 ACGCATCGTTCTGGGTTGAGGTATTTTAGAATTAGTGGCGCTTAAGTAA
* * * * *
51244519 AAATGCCGCTAAAGAACACAATTAGAGGCGCATTATTCAAAGCGCCGCAAGAAAA-CTTAACCAA
1 AAACGCCGCTAAAGCACACCATTAGCGGCGCATTATACAAAGCGCCGCAA-AAAATCTTAACCAA
* * *
51244583 AACGCGTCGTTTTTGGTTGAGGTATTTTAGAATTAGTGGCGC-TATAGT-A
65 AACGCATCGTTCTGGGTTGAGGTATTTTAGAATTAGTGGCGCTTA-AGTAA
* * ** *
51244632 AAACGCCGCTAAAGTACATCATTAGCGGCGCATTATACTGAGCGCCGCGAATAAATCTTAACCAA
1 AAACGCCGCTAAAGCACACCATTAGCGGCGCATTATACAAAGCGCCGC-AAAAAATCTTAACCAA
*
51244697 AATGCATC
65 AACGCATC
51244705 ATTTTAAACC
Statistics
Matches: 567, Mismatches: 69, Indels: 9
0.88 0.11 0.01
Matches are distributed among these distances:
113 190 0.34
114 373 0.66
115 4 0.01
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (114 bp):
AAACGCCGCTAAAGCACACCATTAGCGGCGCATTATACAAAGCGCCGCAAAAAATCTTAACCAAA
ACGCATCGTTCTGGGTTGAGGTATTTTAGAATTAGTGGCGCTTAAGTAA
Found at i:51245250 original size:21 final size:21
Alignment explanation
Indices: 51245226--51245269 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
51245216 AAGGGTACTT
* *
51245226 GGTTTA-ATGGTTTGAGTTTAA
1 GGTTTAGA-GGTTGGAGATTAA
51245247 GGTTTAGAGGTTGGAGATTAA
1 GGTTTAGAGGTTGGAGATTAA
51245268 GG
1 GG
51245270 GATAGGGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (21 bp):
GGTTTAGAGGTTGGAGATTAA
Found at i:51245421 original size:22 final size:23
Alignment explanation
Indices: 51245366--51245423 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
51245356 TTGGGGCTAA
* *
51245366 GGTTTAAGGTTTAAGTGTTAAAG
1 GGTTTAAGGTTTTAGAGTTAAAG
*
51245389 GGTTTAGGGTTTTAGAG-T-AAG
1 GGTTTAAGGTTTTAGAGTTAAAG
51245410 TGGTTTAAGGTTTT
1 -GGTTTAAGGTTTT
51245424 TTGGTTAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 13 0.43
23 14 0.47
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (23 bp):
GGTTTAAGGTTTTAGAGTTAAAG
Found at i:51246304 original size:190 final size:191
Alignment explanation
Indices: 51245946--51246309 Score: 498
Period size: 190 Copynumber: 1.9 Consensus size: 191
51245936 CTTTCACCTT
* * * *
51245946 TTCAACGGCGATTTCCCCTCTTCTCGGTCGAATATCGGTTCTCGTCTGGGCTGACTGGTAAAAAA
1 TTCAACGACGATTTCCCCTCTTCTCGATCGAATATCGCTTCTCATCTGGGCTGACTGGTAAAAAA
* * * * * *
51246011 AATTTCGAAATCCCTAATTTCTCCGTTGACTCCGTATATGGCTGTTCATTTTTATGTTTGATTTT
66 AATATCCAAATCCCTAATTTATCCGTTGAATACGTATATGGCTATTCATTTTTATGTTTGATTTT
* *****
51246076 TCTTTCTGTAATGCCCGCTTTGTTTTTCCTTTCTCTTTAAATTCCAGAGACCATTCACCCC
131 TCTTTCTCTAATGCCCGCTACAAATTTCCTTTCTCTTTAAATTCCAGAGACCATTCACCCC
* *
51246137 TTCAACGACGATTTCCCCTCTTTTCGATCGAATATTGCTTCTCATCTGGGCTGACTGGT-AAAAA
1 TTCAACGACGATTTCCCCTCTTCTCGATCGAATATCGCTTCTCATCTGGGCTGACTGGTAAAAAA
** * *
51246201 TCTATCCAAATCCCTAATTTATTCGTTGAATACGTATATGGCTATTCATTTTTCTGTTTGATTTT
66 AATATCCAAATCCCTAATTTATCCGTTGAATACGTATATGGCTATTCATTTTTATGTTTGA-TTT
*
51246266 TTCTTTCTCTAATGCTCGC-ACAAATTTCCTTTCTCTTTAAATTC
130 TTCTTTCTCTAATGCCCGCTACAAATTTCCTTTCTCTTTAAATTC
51246310 TGTGTTGCTT
Statistics
Matches: 149, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
190 76 0.51
191 73 0.49
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.42
Consensus pattern (191 bp):
TTCAACGACGATTTCCCCTCTTCTCGATCGAATATCGCTTCTCATCTGGGCTGACTGGTAAAAAA
AATATCCAAATCCCTAATTTATCCGTTGAATACGTATATGGCTATTCATTTTTATGTTTGATTTT
TCTTTCTCTAATGCCCGCTACAAATTTCCTTTCTCTTTAAATTCCAGAGACCATTCACCCC
Found at i:51247811 original size:13 final size:13
Alignment explanation
Indices: 51247790--51247822 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
51247780 TGTTTTAATA
*
51247790 TCTATATAAGTTT
1 TCTAAATAAGTTT
51247803 TCTAAATAAGTTT
1 TCTAAATAAGTTT
51247816 TCTAAAT
1 TCTAAAT
51247823 TTATTTGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.48
Consensus pattern (13 bp):
TCTAAATAAGTTT
Found at i:51247853 original size:15 final size:15
Alignment explanation
Indices: 51247818--51247856 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 15
51247808 ATAAGTTTTC
*
51247818 TAAATTTATTTGTAT
1 TAAATTTATTAGTAT
51247833 TAAAATTTATTAGTAT
1 T-AAATTTATTAGTAT
51247849 TAAATTTA
1 TAAATTTA
51247857 CTTCGTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (15 bp):
TAAATTTATTAGTAT
Found at i:51247964 original size:17 final size:17
Alignment explanation
Indices: 51247944--51247993 Score: 72
Period size: 17 Copynumber: 3.2 Consensus size: 17
51247934 TTAATATCTA
51247944 TATAAGTTTTCTAAATT
1 TATAAGTTTTCTAAATT
51247961 TATAAGTTTTCT-AA--
1 TATAAGTTTTCTAAATT
51247975 -ATAAGTTTTCTAAATT
1 TATAAGTTTTCTAAATT
51247991 TAT
1 TAT
51247994 TTGTATTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.38
14 2 0.07
16 2 0.07
17 14 0.48
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.52
Consensus pattern (17 bp):
TATAAGTTTTCTAAATT
Found at i:51247980 original size:13 final size:13
Alignment explanation
Indices: 51247962--51247989 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
51247952 TTCTAAATTT
51247962 ATAAGTTTTCTAA
1 ATAAGTTTTCTAA
51247975 ATAAGTTTTCTAA
1 ATAAGTTTTCTAA
51247988 AT
1 AT
51247990 TTATTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (13 bp):
ATAAGTTTTCTAA
Found at i:51248020 original size:15 final size:15
Alignment explanation
Indices: 51247985--51248023 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 15
51247975 ATAAGTTTTC
*
51247985 TAAATTTATTTGTAT
1 TAAATTTATTAGTAT
51248000 TAAAATTTATTAGTAT
1 T-AAATTTATTAGTAT
51248016 TAAATTTA
1 TAAATTTA
51248024 CTTCGTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (15 bp):
TAAATTTATTAGTAT
Found at i:51248096 original size:9 final size:9
Alignment explanation
Indices: 51248082--51248465 Score: 290
Period size: 9 Copynumber: 41.9 Consensus size: 9
51248072 GTGTATTAAG
51248082 TTACATAAC
1 TTACATAAC
*
51248091 TTACATAAA
1 TTACATAAC
*
51248100 TTAAATAAC
1 TTACATAAC
51248109 TTACATAAC
1 TTACATAAC
51248118 TTACATAAAC
1 TTACAT-AAC
* *
51248128 TTGCATAAA
1 TTACATAAC
* *
51248137 TTAAATAAT
1 TTACATAAC
51248146 TTACATAAC
1 TTACATAAC
*
51248155 TTACATAAA
1 TTACATAAC
* *
51248164 TTAAATAAT
1 TTACATAAC
*
51248173 TTAAATAA-
1 TTACATAAC
*
51248181 TTGACATAAA
1 TT-ACATAAC
* * *
51248191 TTCCGTGGAC
1 TTACAT-AAC
51248201 TTACATAAC
1 TTACATAAC
51248210 TTACATAAAC
1 TTACAT-AAC
* *
51248220 TTGCATAAA
1 TTACATAAC
*
51248229 TTAAATAAC
1 TTACATAAC
51248238 TTACATAAAC
1 TTACAT-AAC
*
51248248 -TAAATAAC
1 TTACATAAC
* *
51248256 TTAAATTAAA
1 TTACA-TAAC
*
51248266 TTAAATAAC
1 TTACATAAC
51248275 TTACATAAC
1 TTACATAAC
51248284 TTACATAAAC
1 TTACAT-AAC
* *
51248294 TTGCATAAA
1 TTACATAAC
* *
51248303 TTAAATTAC
1 TTACATAAC
51248312 TTACATAAC
1 TTACATAAC
*
51248321 TTACATAAA
1 TTACATAAC
*
51248330 TTAAATAAC
1 TTACATAAC
*
51248339 TTAAATAA-
1 TTACATAAC
*
51248347 TTGACATAAA
1 TT-ACATAAC
* * *
51248357 TTCCGTGGAC
1 TTACAT-AAC
51248367 TTACATAAC
1 TTACATAAC
51248376 TTACATAAAC
1 TTACAT-AAC
* *
51248386 TTGCATAAA
1 TTACATAAC
*
51248395 TTAAATAAC
1 TTACATAAC
51248404 TTACATAAAC
1 TTACAT-AAC
*
51248414 -TAAATAAC
1 TTACATAAC
*
51248422 TTACATATC
1 TTACATAAC
*
51248431 TTACATAAA
1 TTACATAAC
*
51248440 TTAAATAAC
1 TTACATAAC
51248449 TTACATAAC
1 TTACATAAC
51248458 TTACATAA
1 TTACATAA
51248466 TACATAAAAA
Statistics
Matches: 295, Mismatches: 65, Indels: 30
0.76 0.17 0.08
Matches are distributed among these distances:
8 10 0.03
9 225 0.76
10 60 0.20
ACGTcount: A:0.49, C:0.15, G:0.03, T:0.34
Consensus pattern (9 bp):
TTACATAAC
Found at i:51248253 original size:74 final size:74
Alignment explanation
Indices: 51248199--51248465 Score: 283
Period size: 74 Copynumber: 3.6 Consensus size: 74
51248189 AATTCCGTGG
51248199 ACTTACATAACTTACATAAACTTGCATAAATTAAATAACTTACATAAACTAAATAACTTAAATTA
1 ACTTACATAACTTACATAAACTTGCATAAATTAAATAACTTACATAAACTAAATAACTTAAATTA
51248264 AATTAAATA
66 AATTAAATA
* * *
51248273 ACTTACATAACTTACATAAACTTGCATAAATTAAATTACTTACAT-AACTTACATAAATTAAA-T
1 ACTTACATAACTTACATAAACTTGCATAAATTAAATAACTTACATAAAC-TAAATAACTTAAATT
*
51248336 AACTTAAATA
65 AAATTAAATA
* * * ** * * * * * *
51248346 A-TTGACATAAATTCCGTGGACTTACATAACTTACATAAACTTGCATAAATTAAATAACTTACA-
1 ACTT-ACATAACTTACATAAACTTGCATAAATTAAAT-AACTTACATAAACTAAATAACTTAAAT
*
51248409 TAAACTAAATA
64 TAAATTAAATA
* ** * *
51248420 ACTTACATATCTTACATAAA-TTAAATAACTTACATAACTTACATAA
1 ACTTACATAACTTACATAAACTTGCATAAATTAAATAACTTACATAA
51248466 TACATAAAAA
Statistics
Matches: 160, Mismatches: 28, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
72 12 0.08
73 52 0.32
74 92 0.57
75 4 0.03
ACGTcount: A:0.49, C:0.15, G:0.03, T:0.33
Consensus pattern (74 bp):
ACTTACATAACTTACATAAACTTGCATAAATTAAATAACTTACATAAACTAAATAACTTAAATTA
AATTAAATA
Found at i:51248319 original size:92 final size:92
Alignment explanation
Indices: 51248082--51248473 Score: 377
Period size: 92 Copynumber: 4.3 Consensus size: 92
51248072 GTGTATTAAG
* * * * *
51248082 TTACATAACTTACATAAATTAAAT-AACTTACATAACTTACATAAACTTGCATAAATTAAATAAT
1 TTACATAACTTACATAAATTACATAAACTTACATAAATTAAATAAACTTACATAAATTAAATAAC
* *
51248146 TTACATAACTTACATAAATTAAATAAT
66 TTACATAACTTAAATAAATTAAATAAA
* * * ** * * *
51248173 TTAAATAA-TTGACATAAATTCCGTGGACTTACATAACTTACATAAACTTGCATAAATTAAATAA
1 TTACATAACTT-ACATAAATTACATAAACTTACATAAATTAAATAAACTTACATAAATTAAATAA
*
51248237 CTTACATAAAC-TAAATAACTTAAATTAAA
65 CTTACAT-AACTTAAATAAATTAAA-TAAA
* * * * * * *
51248266 TTAAATAACTTACATAACTTACATAAACTTGCATAAATTAAAT-TACTTACATAACTTACATAAA
1 TTACATAACTTACATAAATTACATAAACTTACATAAATTAAATAAACTTACATAAATTAAATAAC
* *
51248330 TTAAATAACTTAAAT-AATTGACATAAA
66 TTACATAACTTAAATAAATT-AAATAAA
* * * * * *
51248357 TTCCGTGGACTTACATAACTTACATAAACTTGCATAAATTAAAT-AACTTACATAAACTAAATAA
1 TTACAT-AACTTACATAAATTACATAAACTTACATAAATTAAATAAACTTACATAAATTAAATAA
* * *
51248421 CTTACATATCTTACATAAATTAAATAAC
65 CTTACATAACTTAAATAAATTAAATAAA
51248449 TTACATAACTTACAT-AA-TACATAAA
1 TTACATAACTTACATAAATTACATAAA
51248474 AATATATCAT
Statistics
Matches: 249, Mismatches: 43, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
89 8 0.03
90 3 0.01
91 38 0.15
92 156 0.63
93 42 0.17
94 2 0.01
ACGTcount: A:0.49, C:0.15, G:0.03, T:0.33
Consensus pattern (92 bp):
TTACATAACTTACATAAATTACATAAACTTACATAAATTAAATAAACTTACATAAATTAAATAAC
TTACATAACTTAAATAAATTAAATAAA
Found at i:51254040 original size:21 final size:21
Alignment explanation
Indices: 51254014--51254063 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
51254004 CTACAACTTA
*
51254014 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCGGCAGCGAGAG
* *
51254035 AAGCAGAAGCTGCAGCGAGAG
1 AAGCAGAGGCGGCAGCGAGAG
51254056 AAGCAGAG
1 AAGCAGAG
51254064 CAGGCCAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.36, C:0.18, G:0.44, T:0.02
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGAG
Found at i:51254493 original size:42 final size:42
Alignment explanation
Indices: 51254388--51254583 Score: 144
Period size: 42 Copynumber: 4.6 Consensus size: 42
51254378 TATAAAAGCA
* *
51254388 CCGCTAAAGAACATGTTCTTTAGCGGGGTTTTAAAAAAAAACG
1 CCGCTAAAGAACATGTTCTTTAGCGGCG-TTTAAAAATAAACG
* ***** * *
51254431 CCACTATTTTTCATGTTCTTTAGCGGCGCTTAAGAATAAACG
1 CCGCTAAAGAACATGTTCTTTAGCGGCGTTTAAAAATAAACG
* ***** *
51254473 CCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAGCG
1 CCGCTAAAGAACATGTTCTTTAGCGGCGTTTAAAAATAAACG
* * ***
51254515 CCGCTAAAGAACATGGTCTTTAACGGCGTTT--TTTTCAAAGCG
1 CCGCTAAAGAACATGTTCTTTAGCGGCGTTTAAAAAT-AAA-CG
*
51254557 CCGCTAAAGAACATGTTCTTTAACGGC
1 CCGCTAAAGAACATGTTCTTTAGCGGC
51254584 ATTTTTGTTT
Statistics
Matches: 122, Mismatches: 29, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
40 3 0.02
41 2 0.02
42 96 0.79
43 21 0.17
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (42 bp):
CCGCTAAAGAACATGTTCTTTAGCGGCGTTTAAAAATAAACG
Found at i:51254589 original size:42 final size:42
Alignment explanation
Indices: 51254471--51254589 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
51254461 TAAGAATAAA
* *
51254471 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAACGGCGTTTTTTTCAAAG
*
51254513 CGCCGCTAAAGAACATGGTCTTTAACGGCGTTTTTTTCAAAG
1 CGCCGCTAAAGAACATGATCTTTAACGGCGTTTTTTTCAAAG
* *
51254555 CGCCGCTAAAGAACATGTTCTTTAACGGCATTTTT
1 CGCCGCTAAAGAACATGATCTTTAACGGCGTTTTT
51254590 GTTTGTAAAC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGATCTTTAACGGCGTTTTTTTCAAAG
Found at i:51255833 original size:107 final size:104
Alignment explanation
Indices: 51255709--51255921 Score: 295
Period size: 107 Copynumber: 2.0 Consensus size: 104
51255699 GCAAAAAAAT
** * *
51255709 TTTCATTTTGAACAAAATGATGCCGTTTTGCTATTC-ATAAAA-TTTTTATTTTGTTTTTTTTAT
1 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTA-AAAATTTTTTATTTT-ATTTTTTTAT
* *
51255772 AAATTGATTTATTTTTTGCGGCGTTTTTATAAAAAACGCCTCTA
64 AAATTGA--T-TTTTTTGCGGCATTTTTATAAAAAACGCCGCTA
*
51255816 TTTCATTTTGAACAAAATGACACTGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTTATAA
1 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTTATAA
*
51255881 ATTGATTTTTTTGCGGCATTTTTATGAAAAACGCCGCTA
66 ATTGATTTTTTTGCGGCATTTTTATAAAAAACGCCGCTA
51255920 TT
1 TT
51255922 GCTTACCTTT
Statistics
Matches: 96, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
104 32 0.33
105 1 0.01
107 52 0.54
108 11 0.11
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.50
Consensus pattern (104 bp):
TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTTATAA
ATTGATTTTTTTGCGGCATTTTTATAAAAAACGCCGCTA
Found at i:51256176 original size:237 final size:249
Alignment explanation
Indices: 51255625--51256278 Score: 793
Period size: 237 Copynumber: 2.6 Consensus size: 249
51255615 TTGCTATATA
* * * * * * *
51255625 ATTTTTTTGTGGCGTTTTTTTATAAAAATGCAGCTATTGCTTACCTATT-GCGGCGTTTTTTTAT
1 ATTTTTTTGCGGCATTTTTATA-AAAAACGCCGCTATTGCTTACCT-TTAGCGGCG-TTTGTCAT
* ** *
51255689 GAAAAACACCGCAAAAAAATTTTCATTTTGAACAAAATGATGCCGTTTTGCTATTCATAAAA-TT
63 -AAAAACGCCGCAAAAATTTTTTCATTTTGAACAAAATGACGCCGTTTTGCTATTCATAAAATTT
*
51255753 TTTATTTTGTTTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTTTATAAAAAACGCCTCTATT
127 TTTATTTTG--TTTTTTATAAATTGA-TT-TTTTTTGCGGCGTTTTTATAAAAAACGCCGCTATT
* * *
51255818 TCATTTTGAACAAAATGACACTGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTTATAAAT
188 TCATTTTGAACAAAATGACACTGTTTTGC-ATGCT-AAAA-TTTTTATTTTATATATTGAT--AT
51255883 TG
248 TG
* *
51255885 ATTTTTTTGCGGCATTTTTATGAAAAACGCCGCTATTGCTTACCTTTAGCGGCGTTTTTCATAAA
1 ATTTTTTTGCGGCATTTTTATAAAAAACGCCGCTATTGCTTACCTTTAGCGGCGTTTGTCATAAA
* *
51255950 AACGCTGC-AAATTTTTTTCATTTTGAACAAAATGACGCCGTTTTGCTATT-ATAAAATTTTTTA
66 AACGCCGCAAAAATTTTTTCATTTTGAACAAAATGACGCCGTTTTGCTATTCATAAAATTTTTTA
*
51256013 TTTTGTTTTTTATAAATTTATTTTTTTTGCGGCG-TTTTATAAAAAACGCCGCTATTTCA-TTTG
131 TTTTGTTTTTTATAAATTGATTTTTTTTGCGGCGTTTTTATAAAAAACGCCGCTATTTCATTTTG
*
51256076 AACAAAATGACGCTGTTTTGC-T-CT-AAA-TTTT-TTTTATATATTGAT-TT-
196 AACAAAATGACACTGTTTTGCATGCTAAAATTTTTATTTTATATATTGATATTG
** *
51256123 A-TTTTTTGCGGTGTTTTTATAAAAAAACGCC-CTATTGCTTGCCTTTAGCGGCGTTTGTCATAA
1 ATTTTTTTGCGGCATTTTTAT-AAAAAACGCCGCTATTGCTTACCTTTAGCGGCGTTTGTCATAA
* *
51256186 AAACGCCGCAAAAAATTATTTCATTTTGAACAAAAAGACGCCGTTTTGCT-TTGC-TAAAAATTT
65 AAACGCCGC-AAAAATTTTTTCATTTTGAACAAAATGACGCCGTTTTGCTATT-CAT-AAAATTT
*
51256249 TTTATTTTATTTTTTATAAATTGATTTTTT
127 TTTATTTTGTTTTTTATAAATTGATTTTTT
51256279 ATAAAAAAAA
Statistics
Matches: 356, Mismatches: 30, Indels: 36
0.84 0.07 0.09
Matches are distributed among these distances:
237 55 0.15
238 12 0.03
239 39 0.11
240 35 0.10
242 11 0.03
243 4 0.01
245 3 0.01
247 2 0.01
248 1 0.00
250 24 0.07
251 24 0.07
252 12 0.03
253 2 0.01
254 14 0.04
255 6 0.02
256 49 0.14
257 9 0.03
258 9 0.03
259 27 0.08
260 18 0.05
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (249 bp):
ATTTTTTTGCGGCATTTTTATAAAAAACGCCGCTATTGCTTACCTTTAGCGGCGTTTGTCATAAA
AACGCCGCAAAAATTTTTTCATTTTGAACAAAATGACGCCGTTTTGCTATTCATAAAATTTTTTA
TTTTGTTTTTTATAAATTGATTTTTTTTGCGGCGTTTTTATAAAAAACGCCGCTATTTCATTTTG
AACAAAATGACACTGTTTTGCATGCTAAAATTTTTATTTTATATATTGATATTG
Found at i:51256915 original size:15 final size:15
Alignment explanation
Indices: 51256883--51256932 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
51256873 CCCTAAACTT
* *
51256883 TAAATCCCTAACCCC
1 TAAACCCCTAACACC
*
51256898 TAAACCCCTAACATC
1 TAAACCCCTAACACC
51256913 T-AACCCCTAA-ACCC
1 TAAACCCCTAACA-CC
51256927 TAAACC
1 TAAACC
51256933 TTAAATCCCA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 1 0.03
14 11 0.38
15 17 0.59
ACGTcount: A:0.38, C:0.44, G:0.00, T:0.18
Consensus pattern (15 bp):
TAAACCCCTAACACC
Found at i:51256929 original size:14 final size:14
Alignment explanation
Indices: 51256888--51256964 Score: 50
Period size: 14 Copynumber: 5.4 Consensus size: 14
51256878 AACTTTAAAT
*
51256888 CCCTAACCCCTAAAC
1 CCCTAAACCCT-AAC
*
51256903 CCCT-AACATCTAAC
1 CCCTAAAC-CCTAAC
*
51256917 CCCTAAACCCTAAA
1 CCCTAAACCCTAAC
*
51256931 CCTTAAATCCC-AAC
1 CCCTAAA-CCCTAAC
* * *
51256945 CCTTAAACCATAAT
1 CCCTAAACCCTAAC
51256959 CCCTAA
1 CCCTAA
51256965 TTCATAATCC
Statistics
Matches: 49, Mismatches: 9, Indels: 9
0.73 0.13 0.13
Matches are distributed among these distances:
13 2 0.04
14 35 0.71
15 12 0.24
ACGTcount: A:0.38, C:0.43, G:0.00, T:0.19
Consensus pattern (14 bp):
CCCTAAACCCTAAC
Found at i:51256959 original size:20 final size:20
Alignment explanation
Indices: 51256922--51256961 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
51256912 CTAACCCCTA
*
51256922 AACCCTAAACCTTAAATCCC
1 AACCCTAAACCATAAATCCC
51256942 AACCCTTAAACCAT-AATCCC
1 AACCC-TAAACCATAAATCCC
51256962 TAATTCATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (20 bp):
AACCCTAAACCATAAATCCC
Found at i:51256970 original size:14 final size:14
Alignment explanation
Indices: 51256952--51256993 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
51256942 AACCCTTAAA
51256952 CCATAATCCCTAAT
1 CCATAATCCCTAAT
*
51256966 TCATAATCCCTAAAT
1 CCATAATCCCT-AAT
*
51256981 CCATACTCCCTAA
1 CCATAATCCCTAA
51256994 ACCTTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.29
Consensus pattern (14 bp):
CCATAATCCCTAAT
Found at i:51256990 original size:15 final size:15
Alignment explanation
Indices: 51256948--51256994 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
51256938 TCCCAACCCT
51256948 TAAA-CCATAATCCC
1 TAAATCCATAATCCC
*
51256962 T-AATTCATAATCCC
1 TAAATCCATAATCCC
*
51256976 TAAATCCATACTCCC
1 TAAATCCATAATCCC
51256991 TAAA
1 TAAA
51256995 CCTTAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 2 0.07
14 11 0.39
15 15 0.54
ACGTcount: A:0.40, C:0.32, G:0.00, T:0.28
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:51257108 original size:18 final size:18
Alignment explanation
Indices: 51257087--51257122 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
51257077 ATTATCTCTT
51257087 TTACAATTATATAAGAAC
1 TTACAATTATATAAGAAC
51257105 TTACAATTATATAAGAAC
1 TTACAATTATATAAGAAC
51257123 ATATTTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.11, G:0.06, T:0.33
Consensus pattern (18 bp):
TTACAATTATATAAGAAC
Found at i:51257867 original size:113 final size:113
Alignment explanation
Indices: 51257617--51258057 Score: 607
Period size: 114 Copynumber: 3.9 Consensus size: 113
51257607 AGAATTTTTT
* * * *
51257617 GCGGCGCTTTCTTATAAACGCTGGTAAATCCCAAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
* * *
51257682 GTTTTCTTGCGGCG-TTTTTGAGAAAGCGCCGCTAAAGCCCTGAGCATTA
66 GTTTT-TTGCGGCGCTTTCTCA-AAAACGCCGCTAAAGCCCTGAGCATTA
* * *
51257731 GCGGCGCTTTCTTAAAAAAGCCGCTAAATCCCCAAAAGCTCACAGAACAGCGTCGTTGGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
* * * *
51257796 GTTTTTTGCGGCGCTTTCTCAAAAATGCCTCTAAAGGCCTAAGCATTA
66 GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * *
51257844 GCGGCGCTTTCTTAAAAACGCCGCTAAA-CCCTCGAAAGCTCACAAAACGTCGTCTTTGGGCTTA
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCC-CAAAAGCTCACAAAACGGCGTCGTTGGGCTTA
* * * *
51257908 TGTTTTTTTACGGCGCTTTCTCAAAAATGCCGCTAAAGCCCTGAGCGTTA
65 -GGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * *
51257958 GCGGCGCTTTATTAAAAACGCCGCTAAATCCCCAAAAGCTTACAAAACGGCGTCGTTGGGCTTAT
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
*
51258023 GTTTTTTGCGGCGCTTTCTCAGAAACGCCGCTAAA
66 GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAA
51258058 TCCCCGAAAG
Statistics
Matches: 287, Mismatches: 36, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
112 3 0.01
113 115 0.40
114 166 0.58
115 3 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (113 bp):
GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
Found at i:51258013 original size:227 final size:227
Alignment explanation
Indices: 51257617--51258057 Score: 634
Period size: 227 Copynumber: 1.9 Consensus size: 227
51257607 AGAATTTTTT
* * *
51257617 GCGGCGCTTTCTTATAAACGCTGGTAAATCCCAAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCAAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
* * * * *
51257682 GTTTTCTTGCGGCGTTTTTGAGAAAGCGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAA
66 GTTTTCTTACGGCGTTTCTCAGAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATTAAA
*
51257747 AAAGCCGCTAAATCCCCAAAAGCTCACAGAACAGCGTCGTTGGGCTTAGGTTTTTTGCGGCGCTT
131 AAAGCCGCTAAATCCCCAAAAGCTCACAAAACAGCGTCGTTGGGCTTAGGTTTTTTGCGGCGCTT
* *
51257812 TCTCAAAAATGCCTCTAAAGGCCTAAGCATTA
196 TCTCAAAAACGCCGCTAAAGGCCTAAGCATTA
** * *
51257844 GCGGCGCTTTCTTAAAAACGCCGCTAAA-CCCTCGAAAGCTCACAAAACGTCGTCTTTGGGCTTA
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCC-AAAAAGCTCACAAAACGGCGTCGTTGGGCTTA
* * * *
51257908 TGTTTTTTTACGGCGCTTTCTCA-AAAATGCCGCTAAAGCCCTGAGCGTTAGCGGCGCTTTATTA
65 GGTTTTCTTACGGCG-TTTCTCAGAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATTA
* * * *
51257972 AAAACGCCGCTAAATCCCCAAAAGCTTACAAAACGGCGTCGTTGGGCTTATGTTTTTTGCGGCGC
129 AAAAAGCCGCTAAATCCCCAAAAGCTCACAAAACAGCGTCGTTGGGCTTAGGTTTTTTGCGGCGC
*
51258037 TTTCTCAGAAACGCCGCTAAA
194 TTTCTCAAAAACGCCGCTAAA
51258058 TCCCCGAAAG
Statistics
Matches: 188, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
226 3 0.02
227 180 0.96
228 5 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (227 bp):
GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCAAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
GTTTTCTTACGGCGTTTCTCAGAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATTAAA
AAAGCCGCTAAATCCCCAAAAGCTCACAAAACAGCGTCGTTGGGCTTAGGTTTTTTGCGGCGCTT
TCTCAAAAACGCCGCTAAAGGCCTAAGCATTA
Found at i:51258078 original size:72 final size:72
Alignment explanation
Indices: 51257958--51258128 Score: 236
Period size: 72 Copynumber: 2.4 Consensus size: 72
51257948 CTGAGCGTTA
* * * *
51257958 GCGGCGCTTTATTAAAAACGCCGCTAAATCCCCAAAAGCTTACAAAACGGCGTCGTTGGGCTTAT
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
51258023 GTTTTTT
66 GTTTTTT
* * *** *
51258030 GCGGCGCTTTCTCAGAAACGCCGCTAAATCCCCGAAAGCTCGGGAAACGGTGTCGTTGGGCTTAG
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
51258095 GTTTTTT
66 GTTTTTT
51258102 GCGGCG-TTGTCTCAAAAACGCCGCTAA
1 GCGGCGCTT-TCTCAAAAACGCCGCTAA
51258129 TGCTTATTTT
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
71 2 0.02
72 85 0.98
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.26
Consensus pattern (72 bp):
GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
GTTTTTT
Found at i:51296440 original size:18 final size:18
Alignment explanation
Indices: 51296413--51296454 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
51296403 TGCTATAATA
*
51296413 GGGTTTGCATAAACACAT
1 GGGTTCGCATAAACACAT
* *
51296431 GGGTTCGCATAAATATAT
1 GGGTTCGCATAAACACAT
51296449 GGGTTC
1 GGGTTC
51296455 ACACAATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (18 bp):
GGGTTCGCATAAACACAT
Found at i:51297230 original size:49 final size:49
Alignment explanation
Indices: 51297156--51297322 Score: 201
Period size: 49 Copynumber: 3.4 Consensus size: 49
51297146 AACATGCTTA
* * * * *
51297156 CACACTTGTCCTATCAGAATGGTTGAGAAACATAAGATATGTTCTCGCC
1 CACACTTATCTTATCAAAATGGTTGAGGAACATAAAATATGTTCTCGCC
* *
51297205 CACACTTATCTTATCAAAATAGTTGAGGAACATAAAACT-TGTTCTCGCT
1 CACACTTATCTTATCAAAATGGTTGAGGAACATAAAA-TATGTTCTCGCC
* * * *
51297254 CACACTTATCTTATCACAATGGCTGAGGAACATAAAACATGTTCTCACC
1 CACACTTATCTTATCAAAATGGTTGAGGAACATAAAATATGTTCTCGCC
* *
51297303 CACAGTTATCTTATCGAAAT
1 CACACTTATCTTATCAAAAT
51297323 CTGTTGGATA
Statistics
Matches: 100, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
49 99 0.99
50 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.30
Consensus pattern (49 bp):
CACACTTATCTTATCAAAATGGTTGAGGAACATAAAATATGTTCTCGCC
Found at i:51299026 original size:134 final size:134
Alignment explanation
Indices: 51298497--51299128 Score: 668
Period size: 133 Copynumber: 4.7 Consensus size: 134
51298487 TGTCGACTTG
* *
51298497 ACGATCATGAACAATTCATTAAGAGTTCATAGATTTACGATCGCAACTCCATTTAAATAGTTCTC
1 ACGATCATGAACAATTCATTAAGAGTTCATCGATTTACGATCGCAACTCCATTTAAATAGTTCAC
* * * * *
51298562 TAATTTATGA-CTACAACTGTTATTTTTAAAGCTCGTTGATTTACGACCACAACTTCAGTTCATT
66 TGATTTATGATC-ACAACTATCATTTTTAAAGCTCGTTGATTTACGATCACAACTTCAGTTGATT
*
51298626 TATTT
130 GATTT
* ** ** * *
51298631 ACGATCATGAACAATTCATTAAGATTTCATCGATTTAAAATCATAACT-CATTTAAATAATTCAT
1 ACGATCATGAACAATTCATTAAGAGTTCATCGATTTACGATCGCAACTCCATTTAAATAGTTCAC
* * * * * *
51298695 TGATTTACGATCACAATTGTCATTTTTAAGGCTCGTTGATTTATGATCACAGCTTCAGTTGATTG
66 TGATTTATGATCACAACTATCATTTTTAAAGCTCGTTGATTTACGATCACAACTTCAGTTGATTG
*
51298760 AGTT
131 ATTT
* * * * * * *
51298764 ACAATCATGAACAATTCATTAAGACTTCGTCGACTTAC-ATTGCAACTCGATTTAAATAGTACAC
1 ACGATCATGAACAATTCATTAAGAGTTCATCGATTTACGATCGCAACTCCATTTAAATAGTTCAC
* * * *
51298828 TGATTTATGATTACAACTATCATTTTTAAAGCTTGTTGATTTACAATCA-AAGCTTTAGTTGATT
66 TGATTTATGATCACAACTATCATTTTTAAAGCTCGTTGATTTACGATCACAA-CTTCAGTTGATT
51298892 GATTT
130 GATTT
* * * *
51298897 ATGATCATGAACAATTCATTAAGAGTTCACCGACTTACGATCGCAACTCCATTTAAACAGTTCAC
1 ACGATCATGAACAATTCATTAAGAGTTCATCGATTTACGATCGCAACTCCATTTAAATAGTTCAC
* * ** * * * * *
51298962 TGATTTATGATCACATA-TATCCTTTTCAAATATCGCTAATTAATGAGCACAA-TTGCAGTTGAT
66 TGATTTATGATCACA-ACTATCATTTTTAAAGCTCGTTGATTTACGATCACAACTT-CAGTTGAT
51299025 TGATTT
129 TGATTT
* * * * *
51299031 ACGATCAAGAACAATTCATTAAGAGTCCACCGATTTACGATCGTAA-TACCATTTCAATAGTT-A
1 ACGATCATGAACAATTCATTAAGAGTTCATCGATTTACGATCGCAACT-CCATTTAAATAGTTCA
* * *
51299094 TTTGATTTATGATCACAAATATAATTTTTAAAGCT
65 -CTGATTTATGATCACAACTATCATTTTTAAAGCT
51299129 TGCCAATTTA
Statistics
Matches: 410, Mismatches: 78, Indels: 20
0.81 0.15 0.04
Matches are distributed among these distances:
132 7 0.02
133 208 0.51
134 192 0.47
135 3 0.01
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (134 bp):
ACGATCATGAACAATTCATTAAGAGTTCATCGATTTACGATCGCAACTCCATTTAAATAGTTCAC
TGATTTATGATCACAACTATCATTTTTAAAGCTCGTTGATTTACGATCACAACTTCAGTTGATTG
ATTT
Found at i:51299316 original size:35 final size:36
Alignment explanation
Indices: 51299266--51299344 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 36
51299256 AAGTATTTTC
* * * *
51299266 TGATTTATGATCACAAC-TCCA-TTTAAATAGTTCGT
1 TGATTTACGACCACAACTTCAAGTTTAAA-AGTTCAT
*
51299301 TGATTTACGACCACAACTTTAAGTTTAAAAGTTCAT
1 TGATTTACGACCACAACTTCAAGTTTAAAAGTTCAT
51299337 TGATTTAC
1 TGATTTAC
51299345 AATCATAGCT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
35 15 0.41
36 16 0.43
37 6 0.16
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.39
Consensus pattern (36 bp):
TGATTTACGACCACAACTTCAAGTTTAAAAGTTCAT
Found at i:51299365 original size:134 final size:134
Alignment explanation
Indices: 51299223--51299478 Score: 334
Period size: 134 Copynumber: 1.9 Consensus size: 134
51299213 TCACAACTTG
* ** ** **
51299223 AGTTCATTGATTTACGATCATGAACAGTTCATTAAGTA-TTTTCTGATTTATGATCACAACTCCA
1 AGTTCATTGATTTACGATCATGAACAATTCATTAAG-AGTTCGCCAATTTAAAATCACAACTCCA
* * *
51299287 TTTAAATAGTTCGTTGATTTACGACCACAACTTTAAGTTTAAAAGTTCATTGATTTACAATCATA
65 TTTAAATAGTTCGTTGATTTACGACCACAACTTTAACTTTAAAAGTTCACTAATTTACAATCATA
51299352 GCTTT
130 GCTTT
* * * * *
51299357 AGTTCATTGATTTACGATCATTAGCAATTTATTCAGAGTTCGCCAATTTAAAATCGCAACTCCAT
1 AGTTCATTGATTTACGATCATGAACAATTCATTAAGAGTTCGCCAATTTAAAATCACAACTCCAT
* * *
51299422 TTAAATAGTTCGTTGATTTACGATCACAACTTTGACTTTTAAAGTTCACTAATTTAC
66 TTAAATAGTTCGTTGATTTACGACCACAACTTTAACTTTAAAAGTTCACTAATTTAC
51299479 GATTACAACT
Statistics
Matches: 103, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
133 1 0.01
134 102 0.99
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.39
Consensus pattern (134 bp):
AGTTCATTGATTTACGATCATGAACAATTCATTAAGAGTTCGCCAATTTAAAATCACAACTCCAT
TTAAATAGTTCGTTGATTTACGACCACAACTTTAACTTTAAAAGTTCACTAATTTACAATCATAG
CTTT
Found at i:51299533 original size:243 final size:243
Alignment explanation
Indices: 51299247--51299691 Score: 599
Period size: 243 Copynumber: 1.8 Consensus size: 243
51299237 CGATCATGAA
* **
51299247 CAGTTCATTAAGTATTTTCTGATTTATGATCACAACTCCATTTAAATAGTTCGTTGATTTACGAC
1 CAGTTCATTAAGTATTTTCTGATTTACGATCACAACTCCATTTAAATAGTTCACTGATTTACGAC
* * * * *
51299312 CACAACTTTAAGTTTAAAAGTTCATTGATTTACAATCATAGCTTTAGTTCATTGATTTACGATCA
66 CACAACTTTAAGTTTAAAAGCTCAGTGATTTACAATCATAACTTCAGATCATTGATTTACGATCA
* * * * *
51299377 TTAGCAATTTATTCAGA-GTTCGCCAATTTAAAATCGCAACTCCATTTAAATAGTTCGTTGATTT
131 TGAACAATTCATTAAGAGGTT-GCCAATTTAAAATCGCAACTCCATTTAAAAAGTTCGTTGATTT
*
51299441 ACGATCACAACTTTGACTTTTAAAGTTCACTAATTTACGATTACAACTT
195 ACCATCACAACTTTGACTTTTAAAGTTCACTAATTTACGATTACAACTT
*
51299490 CAGTTCATTAAG-AGTTTGT-TGATTTACGATCCCAACTCCATTTAAATAGTTCACTGATTTACG
1 CAGTTCATTAAGTA-TTT-TCTGATTTACGATCACAACTCCATTTAAATAGTTCACTGATTTACG
* ** * * * *
51299553 ATCACAGTTTTCATTTTTAAAGCTCAGTGATTTACAATCATAACTTCAGATCATTGATTTACTAT
64 ACCACAACTTTAAGTTTAAAAGCTCAGTGATTTACAATCATAACTTCAGATCATTGATTTACGAT
* * * * *
51299618 TATGAACAATTCATTAAGAGGTTGTCGATTTATAATCGCAACTCCATTTAAAAAGTTTGTTGATT
129 CATGAACAATTCATTAAGAGGTTGCCAATTTAAAATCGCAACTCCATTTAAAAAGTTCGTTGATT
51299683 TACCATCAC
194 TACCATCAC
51299692 CACTATCACT
Statistics
Matches: 172, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
242 1 0.01
243 167 0.97
244 4 0.02
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.39
Consensus pattern (243 bp):
CAGTTCATTAAGTATTTTCTGATTTACGATCACAACTCCATTTAAATAGTTCACTGATTTACGAC
CACAACTTTAAGTTTAAAAGCTCAGTGATTTACAATCATAACTTCAGATCATTGATTTACGATCA
TGAACAATTCATTAAGAGGTTGCCAATTTAAAATCGCAACTCCATTTAAAAAGTTCGTTGATTTA
CCATCACAACTTTGACTTTTAAAGTTCACTAATTTACGATTACAACTT
Found at i:51299739 original size:54 final size:54
Alignment explanation
Indices: 51299657--51299763 Score: 196
Period size: 54 Copynumber: 2.0 Consensus size: 54
51299647 TTATAATCGC
51299657 AACTCCATTTAAAAAGTTTGTTGATTTACCATCACCACTATCACTTTTCTAGCA
1 AACTCCATTTAAAAAGTTTGTTGATTTACCATCACCACTATCACTTTTCTAGCA
* *
51299711 AACTCCATTTAAACAGTTTGTTGATTTACCATCACCACTGTCACTTTTCTAGC
1 AACTCCATTTAAAAAGTTTGTTGATTTACCATCACCACTATCACTTTTCTAGC
51299764 TCATTAAGAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.37
Consensus pattern (54 bp):
AACTCCATTTAAAAAGTTTGTTGATTTACCATCACCACTATCACTTTTCTAGCA
Found at i:51301626 original size:71 final size:70
Alignment explanation
Indices: 51301509--51301706 Score: 204
Period size: 71 Copynumber: 2.8 Consensus size: 70
51301499 TATGACGATC
* * *** * *
51301509 TGTGATGGCTAAGATCCAACATAAGTTGGGGATTCTTGACAGCTTGAGTGAGCAGCATCGGATCG
1 TGTGATGGATGAGATCCAACACGTGTTGTGGATTCTTGACAGCTTGAGTGAGCAACATCGGAT--
51301574 T-TA-TT
64 TATACTT
*
51301579 TAGTGATGGATGAGATCCAACACGTGTTGTGGATTCTTGACAGCTTGAGTGAGCAACATCGTATT
1 T-GTGATGGATGAGATCCAACACGTGTTGTGGATTCTTGACAGCTTGAGTGAGCAACATCGGATT
51301644 ATACTT
65 ATACTT
* * * * * *
51301650 TGTCGATGGTTGAGATCTAGCACGTGTTACT-GATTCTCGACATCTTGAGTGAGCAAC
1 TGT-GATGGATGAGATCCAACACGTGTT-GTGGATTCTTGACAGCTTGAGTGAGCAAC
51301707 GTCAAATAAA
Statistics
Matches: 109, Mismatches: 14, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
69 1 0.01
70 5 0.05
71 102 0.94
72 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (70 bp):
TGTGATGGATGAGATCCAACACGTGTTGTGGATTCTTGACAGCTTGAGTGAGCAACATCGGATTA
TACTT
Found at i:51305295 original size:15 final size:15
Alignment explanation
Indices: 51305275--51305304 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51305265 AACTAAGAAT
51305275 GAATCAAAAACCTAA
1 GAATCAAAAACCTAA
*
51305290 GAATCAAAACCCTAA
1 GAATCAAAAACCTAA
51305305 AATTGTGTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.23, G:0.07, T:0.13
Consensus pattern (15 bp):
GAATCAAAAACCTAA
Found at i:51323255 original size:34 final size:36
Alignment explanation
Indices: 51323205--51323289 Score: 95
Period size: 36 Copynumber: 2.4 Consensus size: 36
51323195 AGAATTTGTC
* *
51323205 GATTTACGACCGCAACTCT-A-TTTAAACAGTTCA-T
1 GATTTACGATCACAACTCTCATTTTAAA-AGTTCACT
* *
51323239 GATTTACGATCACAACTGTCATTTTTAAAGTTCACT
1 GATTTACGATCACAACTCTCATTTTAAAAGTTCACT
*
51323275 TATTTACGATCACAA
1 GATTTACGATCACAA
51323290 TTTCAATTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
34 16 0.37
35 7 0.16
36 20 0.47
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (36 bp):
GATTTACGATCACAACTCTCATTTTAAAAGTTCACT
Found at i:51323434 original size:134 final size:134
Alignment explanation
Indices: 51323164--51323708 Score: 580
Period size: 133 Copynumber: 4.1 Consensus size: 134
51323154 GGGTGTTTCA
* * ** * * *
51323164 TCATTGATTTAAGGTCATAAACAATTCATTAAGAATTTGTCGATTTACGACCGCAACTCTATTTA
1 TCATTGATTTACGATCATAAACAATTCATTAAGAATTCATCGATTTACGATCACAACTCCATTTA
* ** *
51323229 AACAGTTCA-TGATTTACGATCACAACTGTCATTTTTAAAGTTCACTTATTTACGATCACAATTT
66 AACAGTTCATTGATTTACGATCACAACTGTCACTTTTAAAACTCACTTATTTACGATCACAACTT
*
51323293 CAAT
131 CAGT
* * * *
51323297 TCATTTATTTACGATCATAAACAATTCATTAA-AAGTTTATCGACTT-CTGATTACAACTCCATT
1 TCATTGATTTACGATCATAAACAATTCATTAAGAA-TTCATCGATTTAC-GATCACAACTCCATT
* * * * *
51323360 TAAACAGTTCACTGATTTATGATCACAACTGTCACTTTTAAAACTCGCTAATTTACGATCACAGC
64 TAAACAGTTCATTGATTTACGATCACAACTGTCACTTTTAAAACTCACTTATTTACGATCACAAC
*
51323425 TTGAGT
129 TTCAGT
* * * * *
51323431 TCATTGATTTACGATCATGAACAATTCATTAAGAATTCGTCGATTTACTATCGCAGCTCCA-TTA
1 TCATTGATTTACGATCATAAACAATTCATTAAGAATTCATCGATTTACGATCACAACTCCATTTA
* * * * * * * * **
51323495 AGCAGTTCATTGATATAGGATCATAATTGTCATTTTTAAAACTCA-TTGGTTTACGACCACAGTT
66 AACAGTTCATTGATTTACGATCACAACTGTCACTTTTAAAACTCACTT-ATTTACGATCACAACT
51323559 TCAGT
130 TCAGT
* * * *
51323564 TCATTGATTTACGATCATGAGCAATTCATTAAGAGTTCATCGATTTACAATCGA-AACTCCATTT
1 TCATTGATTTACGATCATAAACAATTCATTAAGAATTCATCGATTTACGATC-ACAACTCCATTT
* * * * ** *
51323628 AAACAATTCATTGATTTACAATCACAACAGTCACTTTTAAAGCTTGCTTATTTACTATCACAACT
65 AAACAGTTCATTGATTTACGATCACAACTGTCACTTTTAAAACTCACTTATTTACGATCACAACT
51323693 TCAGT
130 TCAGT
51323698 TCATTGATTTA
1 TCATTGATTTA
51323709 TGATTGCATC
Statistics
Matches: 339, Mismatches: 64, Indels: 17
0.81 0.15 0.04
Matches are distributed among these distances:
132 4 0.01
133 171 0.50
134 159 0.47
135 5 0.01
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (134 bp):
TCATTGATTTACGATCATAAACAATTCATTAAGAATTCATCGATTTACGATCACAACTCCATTTA
AACAGTTCATTGATTTACGATCACAACTGTCACTTTTAAAACTCACTTATTTACGATCACAACTT
CAGT
Found at i:51323477 original size:63 final size:63
Alignment explanation
Indices: 51323410--51323611 Score: 151
Period size: 63 Copynumber: 3.1 Consensus size: 63
51323400 AAACTCGCTA
*
51323410 ATTTACGATCACAGCTTGAGTTCATTGATTTACGATCATGAACAATTCATTAAGAATTCGTCG
1 ATTTACGATCACAGCTTGAGTTCATTGATTTACGATCATGAACAATTCATTAAGAATTCATCG
* * * * *
51323473 ATTTACTATCGCAGCTCCATTAAGCAGTTCATTGATATAGGATCAT-AATTGTC-ATT-TTTAA-
1 ATTTACGATCACAG---C-TT--G-AGTTCATTGATTTACGATCATGAA----CAATTCATTAAG
* *
51323534 AACTCATTG
55 AATTCATCG
* * * * * *
51323543 GTTTACGACCACAGTTTCAGTTCATTGATTTACGATCATGAGCAATTCATTAAGAGTTCATCG
1 ATTTACGATCACAGCTTGAGTTCATTGATTTACGATCATGAACAATTCATTAAGAATTCATCG
51323606 ATTTAC
1 ATTTAC
51323612 AATCGAAACT
Statistics
Matches: 102, Mismatches: 22, Indels: 30
0.66 0.14 0.19
Matches are distributed among these distances:
60 1 0.01
61 3 0.03
62 4 0.04
63 42 0.41
64 1 0.01
66 3 0.03
67 2 0.02
69 3 0.03
70 35 0.34
71 4 0.04
72 3 0.03
73 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (63 bp):
ATTTACGATCACAGCTTGAGTTCATTGATTTACGATCATGAACAATTCATTAAGAATTCATCG
Found at i:51323645 original size:267 final size:267
Alignment explanation
Indices: 51323164--51323708 Score: 684
Period size: 267 Copynumber: 2.0 Consensus size: 267
51323154 GGGTGTTTCA
* * *
51323164 TCATTGATTTAAGGTCATAAACAATTCATTAAGAATTTGTCGATTTACGACCGCAACTCTATTTA
1 TCATTGATTTAAGATCATAAACAATTCATTAAGAATTCGTCGATTTACGACCGCAACTCCATTTA
* ** *
51323229 AACAGTTCATGATTTACGATCACAACTGTCATTTTTAAAGTTCACTTATTTACGATCACAATTTC
66 AACAGTTCATGATATACGATCACAACTGTCATTTTTAAAACTCACTTATTTACGACCACAATTTC
* * * *
51323294 AATTCATTTATTTACGATCATAAACAATTCATTAAAAGTTTATCGACTTCTGATTACAACTCCAT
131 AATTCATTGATTTACGATCATAAACAATTCATTAAAAGTTCATCGACTTCTAATGACAACTCCAT
* ** * *
51323359 TTAAACAGTTCACTGATTTATGATCACAACTGTCACTTTTAAAACTCGCTAATTTACGATCACAG
196 TTAAACAATTCACTGATTTACAATCACAACAGTCACTTTTAAAACTCGCTAATTTACGATCACAA
*
51323424 CTTGAGT
261 CTTCAGT
* * * * *
51323431 TCATTGATTTACGATCATGAACAATTCATTAAGAATTCGTCGATTTACTATCGCAGCTCCA-TTA
1 TCATTGATTTAAGATCATAAACAATTCATTAAGAATTCGTCGATTTACGACCGCAACTCCATTTA
* * * * * *
51323495 AGCAGTTCATTGATATAGGATCATAATTGTCATTTTTAAAACTCA-TTGGTTTACGACCACAGTT
66 AACAGTTCA-TGATATACGATCACAACTGTCATTTTTAAAACTCACTT-ATTTACGACCACAATT
* * * * *
51323559 TCAGTTCATTGATTTACGATCATGAGCAATTCATTAAGAGTTCATCGATTTAC-AATCGA-AACT
129 TCAATTCATTGATTTACGATCATAAACAATTCATTAAAAGTTCATCGACTT-CTAAT-GACAACT
* * * * *
51323622 CCATTTAAACAATTCATTGATTTACAATCACAACAGTCACTTTTAAAGCTTGCTTATTTACTATC
192 CCATTTAAACAATTCACTGATTTACAATCACAACAGTCACTTTTAAAACTCGCTAATTTACGATC
51323687 ACAACTTCAGT
257 ACAACTTCAGT
51323698 TCATTGATTTA
1 TCATTGATTTA
51323709 TGATTGCATC
Statistics
Matches: 236, Mismatches: 38, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
266 13 0.06
267 221 0.94
268 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (267 bp):
TCATTGATTTAAGATCATAAACAATTCATTAAGAATTCGTCGATTTACGACCGCAACTCCATTTA
AACAGTTCATGATATACGATCACAACTGTCATTTTTAAAACTCACTTATTTACGACCACAATTTC
AATTCATTGATTTACGATCATAAACAATTCATTAAAAGTTCATCGACTTCTAATGACAACTCCAT
TTAAACAATTCACTGATTTACAATCACAACAGTCACTTTTAAAACTCGCTAATTTACGATCACAA
CTTCAGT
Found at i:51323898 original size:134 final size:134
Alignment explanation
Indices: 51323704--51323963 Score: 344
Period size: 134 Copynumber: 1.9 Consensus size: 134
51323694 CAGTTCATTG
* * * * * * * *
51323704 ATTTATGATTGCATCTCCATTTAAACAGTTTTCTAATTTATGATCACAATTTTTACTTTTAAAGC
1 ATTTATGATCGCAACTCCATTTAAAAAGTTGTCTAATTTACGATCACAAATGTCACTTTTAAAGC
*
51323769 TCGCTGATGTACGATCACAGCTTCAGTT-ATTTGATTTACAATCATGAATAATTCATTAAGAATT
66 TCGCTGATGTACGATCACAGCTTCAGTTCA-TTGATTTACAATCATGAACAATTCATTAAGAATT
51323833 CACCA
130 CACCA
* *
51323838 ATTTATGATCGCAACTCCATTTAAAAAGCTTGT-TGATTTACGATCACAAATGTCATTTTTAAAG
1 ATTTATGATCGCAACTCCATTTAAAAAG-TTGTCTAATTTACGATCACAAATGTCACTTTTAAAG
* * * * *
51323902 CTCGTTGATTTACGATCACAGCTTCTGTTCATTGATTTACGATTATGAACAATTCATTAAGA
65 CTCGCTGATGTACGATCACAGCTTCAGTTCATTGATTTACAATCATGAACAATTCATTAAGA
51323964 GTTCGTAAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
134 104 0.96
135 4 0.04
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.39
Consensus pattern (134 bp):
ATTTATGATCGCAACTCCATTTAAAAAGTTGTCTAATTTACGATCACAAATGTCACTTTTAAAGC
TCGCTGATGTACGATCACAGCTTCAGTTCATTGATTTACAATCATGAACAATTCATTAAGAATTC
ACCA
Found at i:51330375 original size:26 final size:27
Alignment explanation
Indices: 51330341--51330398 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
51330331 ATGATTTGGC
* *
51330341 TTTTTATTAT-TTAAATTTTT-ATAAT
1 TTTTTATTATATAAAATTTTTAATAAG
51330366 TTTTTAATTATATAAAATTTTTAATAAG
1 TTTTT-ATTATATAAAATTTTTAATAAG
51330394 TTTTT
1 TTTTT
51330399 CTCGTCCATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 5 0.18
26 5 0.18
27 9 0.32
28 9 0.32
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (27 bp):
TTTTTATTATATAAAATTTTTAATAAG
Found at i:51335737 original size:64 final size:64
Alignment explanation
Indices: 51335663--51335794 Score: 264
Period size: 64 Copynumber: 2.1 Consensus size: 64
51335653 GATGACCGGA
51335663 TTCTGAAGGTTACGTTGGCCATCGAAATGGCCTAATAAAACCACTAGAGTTTATAAAACAGTCT
1 TTCTGAAGGTTACGTTGGCCATCGAAATGGCCTAATAAAACCACTAGAGTTTATAAAACAGTCT
51335727 TTCTGAAGGTTACGTTGGCCATCGAAATGGCCTAATAAAACCACTAGAGTTTATAAAACAGTCT
1 TTCTGAAGGTTACGTTGGCCATCGAAATGGCCTAATAAAACCACTAGAGTTTATAAAACAGTCT
51335791 TTCT
1 TTCT
51335795 AAAACATTTG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 68 1.00
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (64 bp):
TTCTGAAGGTTACGTTGGCCATCGAAATGGCCTAATAAAACCACTAGAGTTTATAAAACAGTCT
Found at i:51358772 original size:153 final size:153
Alignment explanation
Indices: 51358494--51358799 Score: 549
Period size: 153 Copynumber: 2.0 Consensus size: 153
51358484 ATATTGCCGA
* *
51358494 AGAAAGTTTGAACTGGTCATAGAGGGAGTTGAGAAGAAATCGGTGGAGTGATAATGGGAGAGATT
1 AGAAAGTTTGAACTAGTCATAGAGGGAGTTGAGAAGAAATCGGTGGAGTGATAAGGGGAGAGATT
* * *
51358559 TGAGGAGAGAATGTTGAGATTTGGTGAGGTTGTTGTTGTGGAGAGTTATATATATCACATCTCAT
66 TGAGGAGAGAATATTGAGATTTGGGGAGGTTCTTGTTGTGGAGAGTTATATATATCACATCTCAT
51358624 TTGTTCCTTGTTCTGAATGGGGG
131 TTGTTCCTTGTTCTGAATGGGGG
51358647 AGAAAGTTTGAACTAGTCATAGAGGGAGTTGAGAAGAAATCGGTGGAGTGATAAGGGGAGAGATT
1 AGAAAGTTTGAACTAGTCATAGAGGGAGTTGAGAAGAAATCGGTGGAGTGATAAGGGGAGAGATT
* *
51358712 TGATGAGAGAATATTTAGATTTGGGGAGGTTCTTGTTGTGGAGAGTTATATATATCACATCTCAT
66 TGAGGAGAGAATATTGAGATTTGGGGAGGTTCTTGTTGTGGAGAGTTATATATATCACATCTCAT
51358777 TTGTTCCTTGTTCTGAATGGGGG
131 TTGTTCCTTGTTCTGAATGGGGG
51358800 GAGATCGACG
Statistics
Matches: 146, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
153 146 1.00
ACGTcount: A:0.28, C:0.07, G:0.33, T:0.32
Consensus pattern (153 bp):
AGAAAGTTTGAACTAGTCATAGAGGGAGTTGAGAAGAAATCGGTGGAGTGATAAGGGGAGAGATT
TGAGGAGAGAATATTGAGATTTGGGGAGGTTCTTGTTGTGGAGAGTTATATATATCACATCTCAT
TTGTTCCTTGTTCTGAATGGGGG
Found at i:51359405 original size:27 final size:27
Alignment explanation
Indices: 51359382--51359662 Score: 325
Period size: 27 Copynumber: 10.5 Consensus size: 27
51359372 ATACCCCCAA
51359382 AGGGTAAAATGACCGTAATGCCCCTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* ** *
51359409 AAGGTAAAATGGTCGTAATGCCCCTAT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* * *
51359436 AAGGTAAAATAACCGTAATACCCCTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* *
51359463 AGGGTAAAATGACCGTAATACCCCTAT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* * * *
51359490 AGGTTAGAATGACCATAATGCCCCTAT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* * * *
51359517 AGGGTAAAATAATCGTAAAGCACCTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* *
51359544 AGGGTAAAATGACCGTAATACCTCTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* *
51359571 AGGATAAAATGACCGTAATGCCCTTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* *
51359598 AGGGTAAAATGACCGTAATACCCTTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
51359625 AGGGTAAAATGACCGTAATG-CCCTGGT
1 AGGGTAAAATGACCGTAATGCCCCT-GT
51359652 -GGG-AAAATGAC
1 AGGGTAAAATGAC
51359663 TATTTTTTTC
Statistics
Matches: 215, Mismatches: 38, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
25 8 0.04
26 6 0.03
27 201 0.93
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.23
Consensus pattern (27 bp):
AGGGTAAAATGACCGTAATGCCCCTGT
Found at i:51359735 original size:24 final size:25
Alignment explanation
Indices: 51359708--51359765 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
51359698 CTGTGGTTAA
* *
51359708 ATGATTGATTTGTCTGTG-TTTGGT
1 ATGACTGATTTGTATGTGATTTGGT
*
51359732 ATGACTGATTTGTATGTGATTT-GA
1 ATGACTGATTTGTATGTGATTTGGT
51359756 ATGACTGATT
1 ATGACTGATT
51359766 CTGAGCACGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 27 0.90
25 3 0.10
ACGTcount: A:0.21, C:0.05, G:0.26, T:0.48
Consensus pattern (25 bp):
ATGACTGATTTGTATGTGATTTGGT
Found at i:51359983 original size:32 final size:32
Alignment explanation
Indices: 51359937--51360267 Score: 269
Period size: 32 Copynumber: 10.4 Consensus size: 32
51359927 ACTGCGATGC
* *
51359937 TACTAATGGCTTTGTGCCGATCATAGTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* *
51359969 TACTGATGGCTTTGTACCGATCATAGTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* *
51360001 TACTAATGGCTTTGTGTCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * * * *
51360033 TACCGATGGCTATATGCTGATCAT-TTCACTGT
1 TACTGATGGCTTTGTGCCGATCATATT-ACCGT
51360065 TACTGATGG-TTGTGTGCCGATCATATTACCGT
1 TACTGATGGCTT-TGTGCCGATCATATTACCGT
** * * *
51360097 TACCAATGG-TTGTATGCTGATCAT-TTCACTGT
1 TACTGATGGCTT-TGTGCCGATCATATT-ACCGT
* * * * *
51360129 TACTGATGGCTATGTACCGATCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * *
51360161 CACTGATGGCTTTATGCCGATCATGTTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * * * *
51360193 TACTGATGG-TTGTGTGTCAATCATATCACTGC
1 TACTGATGGCTT-TGTGCCGATCATATTACCGT
* * * *
51360225 TACTGATGGCTTTGTGGCAATCACATTACTG-
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
*
51360256 TACTTATGGCTT
1 TACTGATGGCTT
51360268 GTAGCAATTC
Statistics
Matches: 240, Mismatches: 51, Indels: 17
0.78 0.17 0.06
Matches are distributed among these distances:
31 18 0.08
32 216 0.90
33 6 0.03
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATTACCGT
Found at i:51362088 original size:23 final size:23
Alignment explanation
Indices: 51362062--51362111 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
51362052 ACAGGCTTTT
*
51362062 AAGTATTTTAAAAACACATAAGA
1 AAGTATTTTAAAAACACACAAGA
*
51362085 AAGTGTTTTAAAAACACACAAGA
1 AAGTATTTTAAAAACACACAAGA
51362108 AAGT
1 AAGT
51362112 TATAGGATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.54, C:0.10, G:0.12, T:0.24
Consensus pattern (23 bp):
AAGTATTTTAAAAACACACAAGA
Found at i:51368848 original size:17 final size:17
Alignment explanation
Indices: 51368822--51368856 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
51368812 TCTTGTCCCC
51368822 AGCCTCAAAACGTTACA
1 AGCCTCAAAACGTTACA
*
51368839 AGCCTTAAAACGTTACA
1 AGCCTCAAAACGTTACA
51368856 A
1 A
51368857 CTTGAAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.26, G:0.11, T:0.20
Consensus pattern (17 bp):
AGCCTCAAAACGTTACA
Found at i:51370945 original size:18 final size:18
Alignment explanation
Indices: 51370922--51370964 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
51370912 TTCGACGTTT
51370922 GGGTTTGAAAAGTTTGAA
1 GGGTTTGAAAAGTTTGAA
51370940 GGGTTTGAAAAGTTTGAA
1 GGGTTTGAAAAGTTTGAA
51370958 GGGTTTG
1 GGGTTTG
51370965 CAACCACAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (18 bp):
GGGTTTGAAAAGTTTGAA
Found at i:51370963 original size:9 final size:9
Alignment explanation
Indices: 51370922--51370964 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
51370912 TTCGACGTTT
51370922 GGGTTTGAA
1 GGGTTTGAA
**
51370931 AAGTTTGAA
1 GGGTTTGAA
51370940 GGGTTTGAA
1 GGGTTTGAA
**
51370949 AAGTTTGAA
1 GGGTTTGAA
51370958 GGGTTTG
1 GGGTTTG
51370965 CAACCACAGA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (9 bp):
GGGTTTGAA
Found at i:51372797 original size:24 final size:24
Alignment explanation
Indices: 51372770--51372817 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
51372760 TTCTATAATC
*
51372770 ATGAATTTGAATTTAATTTATTAT
1 ATGAATTTCAATTTAATTTATTAT
*
51372794 ATGAATTTCAATTTTATTTATTAT
1 ATGAATTTCAATTTAATTTATTAT
51372818 GTAAATGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.56
Consensus pattern (24 bp):
ATGAATTTCAATTTAATTTATTAT
Found at i:51375503 original size:22 final size:22
Alignment explanation
Indices: 51375477--51375519 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
51375467 GGGTTAGGTT
*
51375477 AATTGGGTTTAGCGTTTGGGCC
1 AATTGGGTTTAGCATTTGGGCC
*
51375499 AATTGGGTTTAGTATTTGGGC
1 AATTGGGTTTAGCATTTGGGC
51375520 TTGGGGTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.16, C:0.09, G:0.35, T:0.40
Consensus pattern (22 bp):
AATTGGGTTTAGCATTTGGGCC
Done.