Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62175169
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 981721 characters in sequence are not A, C, G, or T
File 188 of 202
Found at i:57547891 original size:21 final size:20
Alignment explanation
Indices: 57547819--57547893 Score: 55
Period size: 21 Copynumber: 3.6 Consensus size: 20
57547809 TAACTTAATT
57547819 ATTTTAAATATTTTATTAACA
1 ATTTTAAA-ATTTTATTAACA
*** *
57547840 ATTTTATGCTTTT-TATAA-T
1 ATTTTAAAATTTTAT-TAACA
*
57547859 ATTTTGTAAATTTTATTAACA
1 ATTTT-AAAATTTTATTAACA
57547880 ATTTTAAGAATTTT
1 ATTTTAA-AATTTT
57547894 CTGTATTTTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
19 6 0.15
20 15 0.38
21 18 0.46
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (20 bp):
ATTTTAAAATTTTATTAACA
Found at i:57548013 original size:30 final size:29
Alignment explanation
Indices: 57547943--57548027 Score: 108
Period size: 30 Copynumber: 3.0 Consensus size: 29
57547933 ATTTTTTTCA
57547943 ATTTACATATAATTTTTGTTA-TTTTA-AT
1 ATTTACATATAATTTTTG-TACTTTTATAT
*
57547971 AATT--AT-TAATTTTTGTACTTTTATAT
1 ATTTACATATAATTTTTGTACTTTTATAT
57547997 ATTTTACATATAATTTTTGTACTTTTATAT
1 A-TTTACATATAATTTTTGTACTTTTATAT
57548027 A
1 A
57548028 AAACAAATAA
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
24 2 0.04
25 14 0.29
26 5 0.10
27 2 0.04
28 3 0.06
29 2 0.04
30 21 0.43
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.60
Consensus pattern (29 bp):
ATTTACATATAATTTTTGTACTTTTATAT
Found at i:57548037 original size:28 final size:29
Alignment explanation
Indices: 57547977--57548042 Score: 89
Period size: 30 Copynumber: 2.3 Consensus size: 29
57547967 TAATAATTAT
** *
57547977 TAATTTTTGTACTTTTATATATTTTACATA
1 TAATTTTTGTACTTTTATATA-TAAACAAA
57548007 TAATTTTTGTACTTTTATATA-AAACAAA
1 TAATTTTTGTACTTTTATATATAAACAAA
57548035 TAATTTTT
1 TAATTTTT
57548043 TAATATAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 12 0.36
30 21 0.64
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.56
Consensus pattern (29 bp):
TAATTTTTGTACTTTTATATATAAACAAA
Found at i:57550370 original size:39 final size:39
Alignment explanation
Indices: 57550214--57550370 Score: 183
Period size: 39 Copynumber: 4.0 Consensus size: 39
57550204 GACCAAACTG
* * *
57550214 ACCTAGAATAATCATCCCTTTTCAGATCATCTT-TCTCCC
1 ACCTAGAATATTCATCCCTATTCTGATCATCTTCTC-CCC
* *
57550253 ACCTAGAATATTCATCCCTCTTCTGATCATCTTTTCCCC
1 ACCTAGAATATTCATCCCTATTCTGATCATCTTCTCCCC
* * * * * *
57550292 ATCTAGAGTATTCATCCTTATTCCGGTCATCTTCCCCCC
1 ACCTAGAATATTCATCCCTATTCTGATCATCTTCTCCCC
57550331 ACCTAGAATATTCAT-CCTATTCTGATCATCATTCTCCCC
1 ACCTAGAATATTCATCCCTATTCTGATCATC-TTCTCCCC
57550370 A
1 A
57550371 TTCTCCACAT
Statistics
Matches: 99, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
38 12 0.12
39 85 0.86
40 2 0.02
ACGTcount: A:0.23, C:0.34, G:0.06, T:0.36
Consensus pattern (39 bp):
ACCTAGAATATTCATCCCTATTCTGATCATCTTCTCCCC
Found at i:57556629 original size:16 final size:17
Alignment explanation
Indices: 57556608--57556642 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
57556598 AACATTGCTG
*
57556608 AAATAATTTAAA-TAAT
1 AAATAATTCAAATTAAT
57556624 AAATAATTCAAATTAAT
1 AAATAATTCAAATTAAT
57556641 AA
1 AA
57556643 CAGTTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (17 bp):
AAATAATTCAAATTAAT
Found at i:57559149 original size:24 final size:24
Alignment explanation
Indices: 57559117--57559231 Score: 86
Period size: 24 Copynumber: 4.5 Consensus size: 24
57559107 CTTGTCGTGT
57559117 CTCTCATTCTCATTCTCGCTCACA
1 CTCTCATTCTCATTCTCGCTCACA
* * * *
57559141 CTCTCATTCTTATTTTTGCTTACA
1 CTCTCATTCTCATTCTCGCTCACA
* *
57559165 CTCTCCTTCTCATTCTCAATCTTACACTCA
1 CTCTCATTCTCATTCTC--GC-T-CA--CA
* * *
57559195 CTCTCACTCTCACTCTCACTCACA
1 CTCTCATTCTCATTCTCGCTCACA
*
57559219 CTCTCATCCTCAT
1 CTCTCATTCTCAT
57559232 CCTCAATCTC
Statistics
Matches: 68, Mismatches: 17, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
24 45 0.66
26 3 0.04
27 2 0.03
28 2 0.03
30 16 0.24
ACGTcount: A:0.18, C:0.40, G:0.02, T:0.40
Consensus pattern (24 bp):
CTCTCATTCTCATTCTCGCTCACA
Found at i:57559180 original size:6 final size:6
Alignment explanation
Indices: 57559163--57559254 Score: 73
Period size: 6 Copynumber: 15.3 Consensus size: 6
57559153 TTTTTGCTTA
* * * *
57559163 CACTCT C-CTTCT CATTCT CAATCT TACACT CACTCT CACTCT CACTCT
1 CACTCT CAC-TCT CACTCT CACTCT CACTCT CACTCT CACTCT CACTCT
* * *
57559211 CACTCA CACTCT CA-TCCT CA-TCCT CAATCT CATTCT CACTCT CA
1 CACTCT CACTCT CACT-CT CACT-CT CACTCT CACTCT CACTCT CA
57559255 TACTTATTCT
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
5 2 0.03
6 68 0.96
7 1 0.01
ACGTcount: A:0.21, C:0.45, G:0.00, T:0.35
Consensus pattern (6 bp):
CACTCT
Found at i:57559782 original size:14 final size:13
Alignment explanation
Indices: 57559765--57559794 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
57559755 TAATAAAAAC
57559765 AATATATATATATA
1 AATATATATATA-A
57559779 AATATATATATAA
1 AATATATATATAA
57559792 AAT
1 AAT
57559795 TTCAATTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AATATATATATAA
Found at i:57559785 original size:12 final size:12
Alignment explanation
Indices: 57559768--57559792 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57559758 TAAAAACAAT
57559768 ATATATATATAA
1 ATATATATATAA
57559780 ATATATATATAA
1 ATATATATATAA
57559792 A
1 A
57559793 ATTTCAATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
ATATATATATAA
Found at i:57567543 original size:5 final size:5
Alignment explanation
Indices: 57567516--57567582 Score: 88
Period size: 5 Copynumber: 14.2 Consensus size: 5
57567506 TTTTTATGTT
*
57567516 TTATA -TATA TTAT- TT-TA TTATA TAATA -TATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
*
57567562 TTATA TTATT TTATA TTATA T
1 TTATA TTATA TTATA TTATA T
57567583 AAATTAAATA
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
3 1 0.02
4 11 0.20
5 42 0.78
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:57582305 original size:27 final size:28
Alignment explanation
Indices: 57582240--57582309 Score: 72
Period size: 27 Copynumber: 2.5 Consensus size: 28
57582230 GAAATTTTGG
*
57582240 ATTGTTGGATTTTGATATATGTCTTGAA
1 ATTGTTGGATATTGATATATGTCTTGAA
* * * *
57582268 TTTTTTAGATATTGAT-TATGT-TTTAA
1 ATTGTTGGATATTGATATATGTCTTGAA
57582294 CATTGTTGGATATTGA
1 -ATTGTTGGATATTGA
57582310 ATTGATTATT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
26 4 0.12
27 17 0.52
28 12 0.36
ACGTcount: A:0.26, C:0.03, G:0.19, T:0.53
Consensus pattern (28 bp):
ATTGTTGGATATTGATATATGTCTTGAA
Found at i:57583713 original size:34 final size:35
Alignment explanation
Indices: 57583653--57583719 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
57583643 CAAACACCAG
* *
57583653 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
57583688 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
57583720 CATTTACAGC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:57584472 original size:108 final size:108
Alignment explanation
Indices: 57584337--57584554 Score: 436
Period size: 108 Copynumber: 2.0 Consensus size: 108
57584327 TTATAATAAT
57584337 AATAACTTAATTATTTTAAATTATTTAAGTTTTGAAATAATCCAAAAATTCATTTCAAGTTTTTC
1 AATAACTTAATTATTTTAAATTATTTAAGTTTTGAAATAATCCAAAAATTCATTTCAAGTTTTTC
57584402 AAGAAAATTTGTATATGATTTACAAGTTTTGGAAAATACTCAA
66 AAGAAAATTTGTATATGATTTACAAGTTTTGGAAAATACTCAA
57584445 AATAACTTAATTATTTTAAATTATTTAAGTTTTGAAATAATCCAAAAATTCATTTCAAGTTTTTC
1 AATAACTTAATTATTTTAAATTATTTAAGTTTTGAAATAATCCAAAAATTCATTTCAAGTTTTTC
57584510 AAGAAAATTTGTATATGATTTACAAGTTTTGGAAAATACTCAA
66 AAGAAAATTTGTATATGATTTACAAGTTTTGGAAAATACTCAA
57584553 AA
1 AA
57584555 CCATATTTAT
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 110 1.00
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.41
Consensus pattern (108 bp):
AATAACTTAATTATTTTAAATTATTTAAGTTTTGAAATAATCCAAAAATTCATTTCAAGTTTTTC
AAGAAAATTTGTATATGATTTACAAGTTTTGGAAAATACTCAA
Found at i:57589698 original size:2 final size:2
Alignment explanation
Indices: 57589693--57589724 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
57589683 TTTATAAAAA
57589693 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
57589725 GTTCTAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:57591454 original size:16 final size:16
Alignment explanation
Indices: 57591435--57591518 Score: 59
Period size: 16 Copynumber: 5.4 Consensus size: 16
57591425 TTTTATTAAT
57591435 TTATATTTAATAATAA
1 TTATATTTAATAATAA
*
57591451 TTATA-TTAAAATATAA
1 TTATATTTAATA-ATAA
* ** *
57591467 TTATA-TTATTTTTTA
1 TTATATTTAATAATAA
* *
57591482 TTAT-TTTTATTA-AA
1 TTATATTTAATAATAA
57591496 TTATATTTAATAATAA
1 TTATATTTAATAATAA
*
57591512 TTCTATT
1 TTATATT
57591519 AAAATTTAAT
Statistics
Matches: 51, Mismatches: 13, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
14 5 0.10
15 21 0.41
16 25 0.49
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (16 bp):
TTATATTTAATAATAA
Found at i:57591500 original size:61 final size:61
Alignment explanation
Indices: 57591408--57591528 Score: 197
Period size: 61 Copynumber: 2.0 Consensus size: 61
57591398 TTATTTTCTA
*
57591408 ATATTATATATTATTATTTTTATTAATTTATATTTAATAATAATTATATTAAAATATAATT
1 ATATTATATATTATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATT
* * * *
57591469 ATATTATTTTTTATTATTTTTATTAAATTATATTTAATAATAATTCTATTAAAATTTAAT
1 ATATTATATATTATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAAT
57591529 AACAATAATC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
61 55 1.00
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (61 bp):
ATATTATATATTATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATT
Found at i:57598991 original size:26 final size:27
Alignment explanation
Indices: 57598956--57599012 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
57598946 TTTTTTGTAC
*
57598956 TTTTATATTTTTTATAAATTTATAATA
1 TTTTATATTTTGTATAAATTTATAATA
* * *
57598983 TTTTA-ATTTTGTATATATTTGTATTA
1 TTTTATATTTTGTATAAATTTATAATA
57599009 TTTT
1 TTTT
57599013 TAATATAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (27 bp):
TTTTATATTTTGTATAAATTTATAATA
Found at i:57602056 original size:189 final size:188
Alignment explanation
Indices: 57601792--57602348 Score: 740
Period size: 189 Copynumber: 2.9 Consensus size: 188
57601782 CTATCACTGC
* * * *
57601792 CTCTCCTCTGGCTCCCAGTCAACTCGATCTTCCCTTTCTGAACTTCACCTCTCTTCTTTTTCCTC
1 CTCTCCTCTGGCTCCCAGTCAACTCAATCTTTCCTTTTTGAACTTCACCTCTCTTCTTTTGCCTC
* * * * * *
57601857 TCAACATCAGAATCAGAGTCATCCTCACCGGAGTCATTCCTACGACGGCCTTTCTTAACCATTTC
66 CCACCATCAGAATCAGAGTCATCCTCACTGGAGTCATCCCTATGACGACCTTTCTTAACCATTTC
*
57601922 CTTCATACGACCTCTCGCTCTGTCAGTATCAGAATCAGATTCACTACCCATGTCCCTCT
131 CTTC-TACGACCTCTCGCTCTGTCAGCATCAGAATCAGATTCACTACCCATGTCCCTCT
*
57601981 CTCTCATCTGGCTCCCAGTCAACTCAATCTTTCCTTTTTGAACTTCACCTCTCTTCTTTTGCCTC
1 CTCTCCTCTGGCTCCCAGTCAACTCAATCTTTCCTTTTTGAACTTCACCTCTCTTCTTTTGCCTC
* ** * ** *
57602046 CCACCATCAGAATCAAAGTTGTCCTCGCTGGAGTTGTGCCTATGACGACCTTTCTTAACCATTTC
66 CCACCATCAGAATCAGAGTCATCCTCACTGGAGTCATCCCTATGACGACCTTTCTTAACCATTTC
* * * *
57602111 TTTTCTATGACCTCTTGCTCTGTCAGCATCAGAATCAGATTCACTACCCATGTCCCTTT
131 -CTTCTACGACCTCTCGCTCTGTCAGCATCAGAATCAGATTCACTACCCATGTCCCTCT
* ** *
57602170 CTCTCCTCTGGCTCCTAGTTGACTCAATC-TTCCGTTTTTGAACTTCACCTCACTTCTTTTGCCT
1 CTCTCCTCTGGCTCCCAGTCAACTCAATCTTTCC-TTTTTGAACTTCACCTCTCTTCTTTTGCCT
* * * * *
57602234 CCCACCATCACAATCAGAGTCAGCCTCACTGGAGTCATGCCCT-TGACGACCTTCCTTAATCAAT
65 CCCACCATCAGAATCAGAGTCATCCTCACTGGAGTCAT-CCCTATGACGACCTTTCTTAACCATT
* * *
57602298 TCCTTTTTACGCCCTCTCGCTCTGTCAGCATTAGAATCAGATTCACTACCC
129 TCC-TTCTACGACCTCTCGCTCTGTCAGCATCAGAATCAGATTCACTACCC
57602349 TCAAACTTTT
Statistics
Matches: 319, Mismatches: 45, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
188 4 0.01
189 309 0.97
190 6 0.02
ACGTcount: A:0.19, C:0.35, G:0.12, T:0.34
Consensus pattern (188 bp):
CTCTCCTCTGGCTCCCAGTCAACTCAATCTTTCCTTTTTGAACTTCACCTCTCTTCTTTTGCCTC
CCACCATCAGAATCAGAGTCATCCTCACTGGAGTCATCCCTATGACGACCTTTCTTAACCATTTC
CTTCTACGACCTCTCGCTCTGTCAGCATCAGAATCAGATTCACTACCCATGTCCCTCT
Found at i:57603861 original size:25 final size:26
Alignment explanation
Indices: 57603816--57603864 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
57603806 AAATTATAAA
57603816 ATATAAAAATAAGTATATATATGTAC
1 ATATAAAAATAAGTATATATATGTAC
57603842 ATATAAGAAA-AA-TATATATATGT
1 ATATAA-AAATAAGTATATATATGT
57603865 GAATTATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 11 0.50
26 8 0.36
27 3 0.14
ACGTcount: A:0.55, C:0.02, G:0.08, T:0.35
Consensus pattern (26 bp):
ATATAAAAATAAGTATATATATGTAC
Found at i:57603963 original size:20 final size:22
Alignment explanation
Indices: 57603935--57603983 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
57603925 TAAAATATAT
* *
57603935 ATATGAGTATGTATA-TTA-AA
1 ATATAAGTATATATACTTACAA
57603955 ATATAAGTATATATACTTACGAA
1 ATATAAGTATATATACTTAC-AA
57603978 ATATAA
1 ATATAA
57603984 AAATGTATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 13 0.54
21 3 0.12
23 8 0.33
ACGTcount: A:0.49, C:0.04, G:0.10, T:0.37
Consensus pattern (22 bp):
ATATAAGTATATATACTTACAA
Found at i:57604200 original size:3 final size:3
Alignment explanation
Indices: 57604192--57604236 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
57604182 TAACCGAATA
57604192 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
57604237 GTCAACTTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:57611650 original size:14 final size:14
Alignment explanation
Indices: 57611631--57611657 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
57611621 CGGAGCGGAT
57611631 CGAATTTGGGTTAG
1 CGAATTTGGGTTAG
57611645 CGAATTTGGGTTA
1 CGAATTTGGGTTA
57611658 CACTTAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.33, T:0.37
Consensus pattern (14 bp):
CGAATTTGGGTTAG
Found at i:57626474 original size:18 final size:19
Alignment explanation
Indices: 57626415--57626477 Score: 65
Period size: 22 Copynumber: 3.2 Consensus size: 19
57626405 ATAAAATAGT
* *
57626415 AACAATATAATAACAAAAC
1 AACAAAATAATGACAAAAC
57626434 GACACCAAAATAATGACAAAAC
1 -A-A-CAAAATAATGACAAAAC
*
57626456 AACAAAATAGTGA-AAAAC
1 AACAAAATAATGACAAAAC
57626474 AACA
1 AACA
57626478 GTAAAAAGCA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
18 9 0.24
19 10 0.26
20 2 0.05
21 2 0.05
22 15 0.39
ACGTcount: A:0.65, C:0.17, G:0.06, T:0.11
Consensus pattern (19 bp):
AACAAAATAATGACAAAAC
Found at i:57626892 original size:6 final size:6
Alignment explanation
Indices: 57626881--57626905 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
57626871 TTTTTTTTAT
57626881 TTAATA TTAATA TTAATA TTAATA T
1 TTAATA TTAATA TTAATA TTAATA T
57626906 AAAATCTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TTAATA
Found at i:57640653 original size:21 final size:20
Alignment explanation
Indices: 57640596--57640658 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 20
57640586 CTGATCAGTG
57640596 TACGACACATAAGTGCCTGA
1 TACGACACATAAGTGCCTGA
* * *
57640616 AACGACACACGAGGTGCCTGA
1 TACGACACA-TAAGTGCCTGA
57640637 TACGACACATAAAGTGCCTGA
1 TACGACACAT-AAGTGCCTGA
57640658 T
1 T
57640659 CGGCAAAGCC
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
20 8 0.23
21 27 0.77
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.17
Consensus pattern (20 bp):
TACGACACATAAGTGCCTGA
Found at i:57642409 original size:25 final size:23
Alignment explanation
Indices: 57642365--57642425 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 23
57642355 ATTTTGATTT
*
57642365 ATTTAATAATATAATATCATTATA
1 ATTTAATTATATAATATCA-TATA
57642389 ATTTAATTATCATAA-ATTCATATA
1 ATTTAATTAT-ATAATA-TCATATA
*
57642413 ATATGAATTATAT
1 AT-TTAATTATAT
57642426 TTAAATATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 18 0.56
25 14 0.44
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.46
Consensus pattern (23 bp):
ATTTAATTATATAATATCATATA
Found at i:57642428 original size:35 final size:34
Alignment explanation
Indices: 57642373--57642448 Score: 100
Period size: 35 Copynumber: 2.2 Consensus size: 34
57642363 TTATTTAATA
* *
57642373 ATATAATATCATTATAATTTAATTATCATAAATT
1 ATATAATATAATTATAATTTAAATATCATAAATT
*
57642407 CATATAATATGAATTAT-ATTTAAATATCATTAATT
1 -ATATAATAT-AATTATAATTTAAATATCATAAATT
57642442 ATATAAT
1 ATATAAT
57642449 TAAACAAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
34 7 0.19
35 25 0.68
36 5 0.14
ACGTcount: A:0.47, C:0.05, G:0.01, T:0.46
Consensus pattern (34 bp):
ATATAATATAATTATAATTTAAATATCATAAATT
Found at i:57646767 original size:189 final size:188
Alignment explanation
Indices: 57646447--57647003 Score: 781
Period size: 189 Copynumber: 2.9 Consensus size: 188
57646437 AAAAGTTTGA
* * * *
57646447 GGGTAGTGAATCTGATTCTGATGCTGACAGAGCGAGAGGTCGTAAAAAGGAATTGATTAAGGAAG
1 GGGTAGTGAATCTGATTCTGATGCTGACAGAGCGAGAGGTCGTAAGAAGGAAATGGTTAAGAAAG
* *
57646512 GTCGTCAAAGGCATGACTCCAGTGAGGGTGACTCTGATTCTGATGGTGGGAGGCAAAAGAAGAGA
66 GTCGTCATAGGCATGACTCCAGTGAGGATGACTCTGATTCTGATGGTGGGAGGCAAAAGAAGAGA
** * *
57646577 GGTGAAGTTCAAAAACAGAAGATTGAGTCAACTAGGAGCCAGAGGAGAGCGAGGGACAT
131 GGTGAAGTTCAAAAAC-GAAGATTGAGTTGACTGGGAGCCAGAGGAGAGAGAGGGACAT
* * *
57646636 GGGTAGTGAATCTGATTCTGATGCTGACAGAGCAAGAGGTCATAGGAAGGAAATGGTTAAGAAAG
1 GGGTAGTGAATCTGATTCTGATGCTGACAGAGCGAGAGGTCGTAAGAAGGAAATGGTTAAGAAAG
** ** * *
57646701 GTCGTCATAGGCACAACTCCAGTGAGGACAAATTTGATTCTGATGGTGGGAGGCAAAAGAAGAGA
66 GTCGTCATAGGCATGACTCCAGTGAGGATGACTCTGATTCTGATGGTGGGAGGCAAAAGAAGAGA
* * *
57646766 GGTGAAGCTAAAAAACGAAAGATTGAGTTGACTGGGAGCCACAGGAGAGAGAGGGACAT
131 GGTGAAGTTCAAAAACG-AAGATTGAGTTGACTGGGAGCCAGAGGAGAGAGAGGGACAT
* *
57646825 GGGTAGTGAATCTGATTCTGATACTGACAGAGCGAGAGGTCGTAAGAAGGAAATGGTTAAGAATG
1 GGGTAGTGAATCTGATTCTGATGCTGACAGAGCGAGAGGTCGTAAGAAGGAAATGGTTAAGAAAG
* * * * * * *
57646890 GTTGTCGTAGGAATGACTCCGGTGAGGATGACTCTGATTCTGATGTTGAGAGGAAAAAGAAGAGA
66 GTCGTCATAGGCATGACTCCAGTGAGGATGACTCTGATTCTGATGGTGGGAGGCAAAAGAAGAGA
** *
57646955 GGTGAAGTTCAGAAAGGGAAGATCGAGTTGACTGGGAGCCAGAGGAGAG
131 GGTGAAGTTCA-AAAACGAAGATTGAGTTGACTGGGAGCCAGAGGAGAG
57647004 GCAGTGATAG
Statistics
Matches: 320, Mismatches: 46, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
188 1 0.00
189 315 0.98
190 4 0.01
ACGTcount: A:0.34, C:0.12, G:0.35, T:0.20
Consensus pattern (188 bp):
GGGTAGTGAATCTGATTCTGATGCTGACAGAGCGAGAGGTCGTAAGAAGGAAATGGTTAAGAAAG
GTCGTCATAGGCATGACTCCAGTGAGGATGACTCTGATTCTGATGGTGGGAGGCAAAAGAAGAGA
GGTGAAGTTCAAAAACGAAGATTGAGTTGACTGGGAGCCAGAGGAGAGAGAGGGACAT
Found at i:57647733 original size:39 final size:39
Alignment explanation
Indices: 57647674--57647870 Score: 207
Period size: 39 Copynumber: 5.0 Consensus size: 39
57647664 CCAAAGCTTA
* *
57647674 TGGGGAGAATGATGATCGGAATAGGGGTGAATATTCTAGG
1 TGGGGGGAA-GATGATCGGAATAGGGATGAATATTCTAGG
* *
57647714 TGGGGGGAAGATGACCGGAATAAGGATGAATATTCTAGG
1 TGGGGGGAAGATGATCGGAATAGGGATGAATATTCTAGG
* * * * *
57647753 T-GGGGGATGGGTGACCGGAATAGGGATGAATACTCTAGA
1 TGGGGGGA-AGATGATCGGAATAGGGATGAATATTCTAGG
** * *
57647792 TGGGGAAAAGATGATCAGAAGAGGGATGAATATTCTAGG
1 TGGGGGGAAGATGATCGGAATAGGGATGAATATTCTAGG
* * * * *
57647831 TGGGAGAAAGATGATCTGAAAAGGGATGATTATTCTAGG
1 TGGGGGGAAGATGATCGGAATAGGGATGAATATTCTAGG
57647870 T
1 T
57647871 CAGTTAGGTC
Statistics
Matches: 132, Mismatches: 23, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
38 6 0.05
39 114 0.86
40 12 0.09
ACGTcount: A:0.33, C:0.07, G:0.38, T:0.23
Consensus pattern (39 bp):
TGGGGGGAAGATGATCGGAATAGGGATGAATATTCTAGG
Found at i:57651353 original size:18 final size:17
Alignment explanation
Indices: 57651331--57651425 Score: 68
Period size: 17 Copynumber: 5.4 Consensus size: 17
57651321 TATTTTATAT
*
57651331 TAAAAGTAATAAAAATA
1 TAAAAATAATAAAAATA
*
57651348 TAAAAACAATAAAATATA
1 TAAAAATAATAAAA-ATA
*
57651366 TACAAAT--TAAAAATA
1 TAAAAATAATAAAAATA
* *
57651381 TTATAAATTTATAAAAATA
1 -TA-AAAATAATAAAAATA
*
57651400 TATAAAAGTACAAAAAAATA
1 TA-AAAA-TA-ATAAAAATA
57651420 TAAAAA
1 TAAAAA
57651426 CATATTATAA
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
15 3 0.05
16 7 0.11
17 15 0.24
18 14 0.23
19 13 0.21
20 10 0.16
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.26
Consensus pattern (17 bp):
TAAAAATAATAAAAATA
Found at i:57651453 original size:9 final size:9
Alignment explanation
Indices: 57651342--57651463 Score: 60
Period size: 9 Copynumber: 13.4 Consensus size: 9
57651332 AAAAGTAATA
57651342 AAAATATA-
1 AAAATATAT
*
57651350 AAAACA-AT
1 AAAATATAT
57651358 AAAATATAT
1 AAAATATAT
57651367 ACAAAT-TA-
1 A-AAATATAT
57651375 AAAATAT-T
1 AAAATATAT
*
57651383 ATAAATTTAT
1 A-AAATATAT
57651393 AAAAATATAT
1 -AAAATATAT
*
57651403 AAAAGTACA-
1 AAAA-TATAT
*
57651412 AAAAAATAT
1 AAAATATAT
*
57651421 AAAAACATATT
1 -AAAATATA-T
*
57651432 ATAAATGAAAT
1 A-AAAT-ATAT
57651443 AAAATATAT
1 AAAATATAT
*
57651452 AAATTAT-T
1 AAAATATAT
57651460 AAAA
1 AAAA
57651464 ATTGTCAAAA
Statistics
Matches: 87, Mismatches: 13, Indels: 28
0.68 0.10 0.22
Matches are distributed among these distances:
7 5 0.06
8 19 0.22
9 27 0.31
10 27 0.31
11 7 0.08
12 2 0.02
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (9 bp):
AAAATATAT
Found at i:57651546 original size:45 final size:45
Alignment explanation
Indices: 57651470--57651555 Score: 102
Period size: 46 Copynumber: 1.9 Consensus size: 45
57651460 AAAAATTGTC
* *
57651470 AAAAAATTAATAATTATTAAAATAACAAAAATTATATGTAAATTGA
1 AAAAAAATAAAAATTATTAAAATAACAAAAA-TATATGTAAATTGA
* ** *
57651516 AAAAAAATAAAAATT-TTAAAATTATGAAAATATATTTAAA
1 AAAAAAATAAAAATTATTAAAATAACAAAAATATATGTAAA
57651556 AATACAGAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
44 9 0.26
45 12 0.35
46 13 0.38
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (45 bp):
AAAAAAATAAAAATTATTAAAATAACAAAAATATATGTAAATTGA
Found at i:57651555 original size:20 final size:20
Alignment explanation
Indices: 57651530--57651577 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
57651520 AAATAAAAAT
*
57651530 TTTAAAATTA-TGAAAATATA
1 TTTAAAATTACAGAAAAT-TA
*
57651550 TTTAAAAATACAGAAAATTA
1 TTTAAAATTACAGAAAATTA
57651570 -TTAAAATT
1 TTTAAAATT
57651578 GTTAATAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 7 0.29
20 11 0.46
21 6 0.25
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (20 bp):
TTTAAAATTACAGAAAATTA
Found at i:57652507 original size:19 final size:19
Alignment explanation
Indices: 57652483--57652573 Score: 66
Period size: 19 Copynumber: 4.8 Consensus size: 19
57652473 TTTATATTAA
57652483 AAATAATAAAAA-ATAATAC
1 AAATAATAAAAATAT-ATAC
*
57652502 AAATAATACAAATATATAC
1 AAATAATAAAAATATATAC
*
57652521 AAAT--TTAAAATATTATA-
1 AAATAATAAAAATA-TATAC
* *
57652538 AATTTATAAAAATATATA-
1 AAATAATAAAAATATATAC
*
57652556 AAAGTACAAAAAAATATA
1 AAA-TA-ATAAAAATATA
57652574 AAAACATATT
Statistics
Matches: 58, Mismatches: 8, Indels: 11
0.75 0.10 0.14
Matches are distributed among these distances:
17 9 0.16
18 10 0.17
19 27 0.47
20 12 0.21
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.29
Consensus pattern (19 bp):
AAATAATAAAAATATATAC
Found at i:57652522 original size:10 final size:10
Alignment explanation
Indices: 57652493--57652555 Score: 57
Period size: 9 Copynumber: 6.9 Consensus size: 10
57652483 AAATAATAAA
57652493 AAATA-ATAC
1 AAATATATAC
57652502 AAATA-ATAC
1 AAATATATAC
57652511 AAATATATAC
1 AAATATATAC
57652521 AAAT-T-TA-
1 AAATATATAC
*
57652528 AAATAT-TAT
1 AAATATATAC
* *
57652537 AAATTTATAA
1 AAATATATAC
57652547 AAATATATA
1 AAATATATA
57652556 AAAGTACAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
7 4 0.09
8 5 0.11
9 20 0.43
10 18 0.38
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (10 bp):
AAATATATAC
Found at i:57652556 original size:10 final size:10
Alignment explanation
Indices: 57652475--57652606 Score: 68
Period size: 10 Copynumber: 13.8 Consensus size: 10
57652465 TATGATATTT
57652475 TATATTAAAAA
1 TATA-TAAAAA
57652486 TA-ATAAAAA
1 TATATAAAAA
*
57652495 -ATAATACAAA
1 TAT-ATAAAAA
*
57652505 TA-ATACAAA
1 TATATAAAAA
*
57652514 TATATACAAA
1 TATATAAAAA
57652524 T-T-T-AAAA
1 TATATAAAAA
*
57652531 TAT-TATAAA
1 TATATAAAAA
*
57652540 TTTATAAAAA
1 TATATAAAAA
*
57652550 TATATAAAAG
1 TATATAAAAA
*
57652560 TACA-AAAAA
1 TATATAAAAA
57652569 -ATATAAAAA
1 TATATAAAAA
* *
57652578 CATATTATAAA
1 TATA-TAAAAA
*
57652589 TGAAAT-AAAA
1 T-ATATAAAAA
57652599 TATATAAA
1 TATATAAA
57652607 TTATTAAAAA
Statistics
Matches: 94, Mismatches: 15, Indels: 25
0.70 0.11 0.19
Matches are distributed among these distances:
7 4 0.04
8 6 0.06
9 33 0.35
10 40 0.43
11 9 0.10
12 2 0.02
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.30
Consensus pattern (10 bp):
TATATAAAAA
Found at i:57658153 original size:12 final size:12
Alignment explanation
Indices: 57658136--57658174 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
57658126 GATTAAAAAC
*
57658136 TATGAAAAATTT
1 TATGAAAAACTT
57658148 TATGAAAAGACTT
1 TATGAAAA-ACTT
*
57658161 GATGAAAAACTT
1 TATGAAAAACTT
57658173 TA
1 TA
57658175 AAAAGAACTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
12 13 0.57
13 10 0.43
ACGTcount: A:0.49, C:0.05, G:0.13, T:0.33
Consensus pattern (12 bp):
TATGAAAAACTT
Found at i:57658205 original size:12 final size:12
Alignment explanation
Indices: 57658152--57658252 Score: 60
Period size: 12 Copynumber: 7.9 Consensus size: 12
57658142 AAATTTTATG
*
57658152 AAAAGACTTGAT
1 AAAAAACTTGAT
* *
57658164 GAAAAACTTTA-
1 AAAAAACTTGAT
*
57658175 AAAAGAACTTGCT
1 AAAA-AACTTGAT
**
57658188 GCAAAACTTGAT
1 AAAAAACTTGAT
57658200 AAAAAACTTGGTAAT
1 AAAAAACTT-G--AT
*
57658215 TAAAAACTTGAT
1 AAAAAACTTGAT
*
57658227 AAAAGAACTAGAT
1 AAAA-AACTTGAT
57658240 GAAAAATACTTGA
1 -AAAAA-ACTTGA
57658253 AGAAAGAAAA
Statistics
Matches: 66, Mismatches: 15, Indels: 14
0.69 0.16 0.15
Matches are distributed among these distances:
11 3 0.05
12 32 0.48
13 11 0.17
14 10 0.15
15 10 0.15
ACGTcount: A:0.51, C:0.10, G:0.14, T:0.25
Consensus pattern (12 bp):
AAAAAACTTGAT
Found at i:57658244 original size:25 final size:25
Alignment explanation
Indices: 57658137--57658245 Score: 98
Period size: 25 Copynumber: 4.3 Consensus size: 25
57658127 ATTAAAAACT
* *
57658137 ATGAAAAATTTTATGAAAAG-ACTTG
1 ATGAAAAACTTGAT-AAAAGAACTTG
*
57658162 ATGAAAAACTTTA-AAAAGAACTTG
1 ATGAAAAACTTGATAAAAGAACTTG
* *
57658186 CTGCAAAACTTGATAAAA-AACTTGG
1 ATGAAAAACTTGATAAAAGAACTT-G
* *
57658211 TAATTAAAAACTTGATAAAAGAACTAG
1 --ATGAAAAACTTGATAAAAGAACTTG
57658238 ATGAAAAA
1 ATGAAAAA
57658246 TACTTGAAGA
Statistics
Matches: 69, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
23 5 0.07
24 20 0.29
25 24 0.35
27 16 0.23
28 4 0.06
ACGTcount: A:0.52, C:0.08, G:0.14, T:0.26
Consensus pattern (25 bp):
ATGAAAAACTTGATAAAAGAACTTG
Found at i:57659641 original size:19 final size:19
Alignment explanation
Indices: 57659605--57659654 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
57659595 GTTTCCTGCA
*
57659605 AAAATAAAAAAG--AAAAT
1 AAAATAAAATAGTAAAAAT
57659622 AAAATAAAATAGTAAAAAT
1 AAAATAAAATAGTAAAAAT
57659641 -AAATAATAATAGTA
1 AAAATAA-AATAGTA
57659655 GGAAAATTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 11 0.38
18 6 0.21
19 12 0.41
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (19 bp):
AAAATAAAATAGTAAAAAT
Found at i:57659665 original size:22 final size:20
Alignment explanation
Indices: 57659615--57659666 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
57659605 AAAATAAAAA
*
57659615 AGAAAATAAAATAAAATAGT
1 AGAAAATTAAATAAAATAGT
57659635 A-AAAA-TAAATAATAATAGT
1 AGAAAATTAAATAA-AATAGT
57659654 AGGAAAATTAAAT
1 A-GAAAATTAAAT
57659667 TTTTTTTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 6 0.22
19 11 0.41
20 1 0.04
21 4 0.15
22 5 0.19
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.23
Consensus pattern (20 bp):
AGAAAATTAAATAAAATAGT
Found at i:57661699 original size:15 final size:15
Alignment explanation
Indices: 57661679--57661708 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
57661669 CAATTTCAAC
57661679 CACTTCGACTTGTTT
1 CACTTCGACTTGTTT
57661694 CACTTCGACTTGTTT
1 CACTTCGACTTGTTT
57661709 TCCACGTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.13, T:0.47
Consensus pattern (15 bp):
CACTTCGACTTGTTT
Found at i:57662930 original size:12 final size:12
Alignment explanation
Indices: 57662881--57663003 Score: 56
Period size: 12 Copynumber: 9.8 Consensus size: 12
57662871 AAAAACGAAA
*
57662881 TGATTAAAAACT
1 TGATGAAAAACT
*
57662893 AT-ATGAAAAAAAT
1 -TGATG-AAAAACT
57662906 T-ATGAAAAGACT
1 TGATGAAAA-ACT
57662918 TGATGAAAAACT
1 TGATGAAAAACT
* *
57662930 TTA-AAAAGAACT
1 TGATGAAA-AACT
*
57662942 TGCT-ACAAAACT
1 TGATGA-AAAACT
*
57662954 TGATAAAAAACT
1 TGATGAAAAACT
*
57662966 TGGTAATTAAAAACT
1 T-G--ATGAAAAACT
*
57662981 TGATAAAAGAACT
1 TGATGAAA-AACT
*
57662994 AGATGAAAAA
1 TGATGAAAAA
57663004 TACTTGAAGA
Statistics
Matches: 87, Mismatches: 12, Indels: 23
0.71 0.10 0.19
Matches are distributed among these distances:
11 7 0.08
12 41 0.47
13 28 0.32
14 1 0.01
15 10 0.11
ACGTcount: A:0.54, C:0.08, G:0.12, T:0.25
Consensus pattern (12 bp):
TGATGAAAAACT
Found at i:57662942 original size:24 final size:25
Alignment explanation
Indices: 57662910--57663003 Score: 88
Period size: 24 Copynumber: 3.8 Consensus size: 25
57662900 AAAAATTATG
*
57662910 AAAAG-ACTTGATGAAAAACTTTA-
1 AAAAGAACTTGATGAAAAACTTGAT
*
57662933 AAAAGAACTTGCT-ACAAAACTTGAT
1 AAAAGAACTTGATGA-AAAACTTGAT
*
57662958 AAAA-AACTTGGTAATTAAAAACTTGAT
1 AAAAGAACTT-G--ATGAAAAACTTGAT
*
57662985 AAAAGAACTAGATGAAAAA
1 AAAAGAACTTGATGAAAAA
57663004 TACTTGAAGA
Statistics
Matches: 58, Mismatches: 5, Indels: 14
0.75 0.06 0.18
Matches are distributed among these distances:
23 6 0.10
24 19 0.33
25 12 0.21
27 16 0.28
28 5 0.09
ACGTcount: A:0.54, C:0.10, G:0.13, T:0.23
Consensus pattern (25 bp):
AAAAGAACTTGATGAAAAACTTGAT
Found at i:57663021 original size:18 final size:18
Alignment explanation
Indices: 57662998--57663035 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
57662988 AGAACTAGAT
*
57662998 GAAAAATACTTGAA-GAAA
1 GAAAAACACTT-AATGAAA
57663016 GAAAAACACTTAATGAAA
1 GAAAAACACTTAATGAAA
57663034 GA
1 GA
57663036 CTTAATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.61, C:0.08, G:0.16, T:0.16
Consensus pattern (18 bp):
GAAAAACACTTAATGAAA
Found at i:57664437 original size:28 final size:28
Alignment explanation
Indices: 57664397--57664452 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
57664387 AATGAAAGCC
57664397 TAAAGATTTTTCTTATAAAAAATTGCCA
1 TAAAGATTTTTCTTATAAAAAATTGCCA
57664425 TAAAGATTTTTCTTATAAAAAATTGCCA
1 TAAAGATTTTTCTTATAAAAAATTGCCA
57664453 ACTTAATATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (28 bp):
TAAAGATTTTTCTTATAAAAAATTGCCA
Found at i:57666291 original size:6 final size:6
Alignment explanation
Indices: 57666259--57666516 Score: 221
Period size: 6 Copynumber: 43.0 Consensus size: 6
57666249 TATGAAGAAC
* * * * *
57666259 GAGAAT GAGAGT GCA-AGT GTGAGT GAGAAT GAGAAT GAGAGT GAAAGT
1 GAGAGT GAGAGT G-AGAGT GAGAGT GAGAGT GAGAGT GAGAGT GAGAGT
* * * * * * *
57666307 GTGAGT GAGAAT AAGAAT GAGAGT GAGAAT GAGATT GAGAAT GAGAGT
1 GAGAGT GAGAGT GAGAGT GAGAGT GAGAGT GAGAGT GAGAGT GAGAGT
* * * * *
57666355 GTGAGT GAGAGT GAGAGT GAGAGT GAGATT GAGAAT AAGAGT GTGAGT
1 GAGAGT GAGAGT GAGAGT GAGAGT GAGAGT GAGAGT GAGAGT GAGAGT
* * * * * * *
57666403 GAGAAT GAGAGT GTGAGT GTGAGT GTGAGT GAGAGT GAAAGT AAGAAT
1 GAGAGT GAGAGT GAGAGT GAGAGT GAGAGT GAGAGT GAGAGT GAGAGT
* * * * *
57666451 GAGATT GAGAAT GAGAGT GTGAGT GAGAGT GAGAGC GAGAAT GAGAGT
1 GAGAGT GAGAGT GAGAGT GAGAGT GAGAGT GAGAGT GAGAGT GAGAGT
* *
57666499 GTGAGT GAGAAT GAGAGT
1 GAGAGT GAGAGT GAGAGT
57666517 CACGACAAGT
Statistics
Matches: 202, Mismatches: 48, Indels: 4
0.80 0.19 0.02
Matches are distributed among these distances:
6 201 1.00
7 1 0.00
ACGTcount: A:0.37, C:0.01, G:0.41, T:0.21
Consensus pattern (6 bp):
GAGAGT
Found at i:57669635 original size:14 final size:14
Alignment explanation
Indices: 57669618--57669660 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
57669608 TTAATAATAA
57669618 ATTTAATATTTTTT
1 ATTTAATATTTTTT
*
57669632 ATTTAGAT-TTATTT
1 ATTTA-ATATTTTTT
57669646 ATTTAAATATTTTTT
1 ATTT-AATATTTTTT
57669661 GAGTTTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
14 16 0.67
15 8 0.33
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (14 bp):
ATTTAATATTTTTT
Found at i:57670498 original size:2 final size:2
Alignment explanation
Indices: 57670483--57670538 Score: 50
Period size: 2 Copynumber: 29.5 Consensus size: 2
57670473 TACTTTTTTT
*
57670483 TA TA T- TA TA T- TA TA TA TA TA TA TA TCA -A TA CA -A T- TCA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA T-A TA
57670522 TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA T
57670539 CAAAAGCATG
Statistics
Matches: 46, Mismatches: 1, Indels: 14
0.75 0.02 0.23
Matches are distributed among these distances:
1 5 0.11
2 39 0.85
3 2 0.04
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:57677620 original size:16 final size:16
Alignment explanation
Indices: 57677599--57677637 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
57677589 TTGATTTGCT
*
57677599 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
57677615 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
57677631 ATTACAC
1 ATTACAC
57677638 CTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:57677638 original size:16 final size:16
Alignment explanation
Indices: 57677612--57677668 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
57677602 ACACAGCTTT
* *
57677612 TCCATTACACCTCTAT
1 TCCAATACACCTCTAA
*
57677628 TCCATTACACCTCTAA
1 TCCAATACACCTCTAA
57677644 TCCAATACACCTCTAA
1 TCCAATACACCTCTAA
57677660 TCCAATACA
1 TCCAATACA
57677669 GCGAACCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (16 bp):
TCCAATACACCTCTAA
Found at i:57679697 original size:20 final size:20
Alignment explanation
Indices: 57679672--57679711 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
57679662 AATATTTTCC
*
57679672 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
57679692 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
57679712 TTATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:57679726 original size:34 final size:35
Alignment explanation
Indices: 57679660--57679726 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
57679650 CAAACACCAG
*
57679660 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
57679695 AAAACATTTTCCAG-AAATTATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
57679727 CAATTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:57681498 original size:10 final size:10
Alignment explanation
Indices: 57681467--57681500 Score: 52
Period size: 9 Copynumber: 3.4 Consensus size: 10
57681457 TTTATACTAA
57681467 AAATAATATAC
1 AAAT-ATATAC
57681478 AAATA-ATAC
1 AAATATATAC
57681487 AAATATATAC
1 AAATATATAC
57681497 AAAT
1 AAAT
57681501 TTAAAATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.41
10 9 0.41
11 4 0.18
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (10 bp):
AAATATATAC
Found at i:57681518 original size:16 final size:17
Alignment explanation
Indices: 57681466--57681519 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 17
57681456 TTTTATACTA
*
57681466 AAAATAATATACAAATAAT
1 AAAAT-ATATACAAAT-TT
57681485 ACAAATATATACAAATTT
1 A-AAATATATACAAATTT
*
57681503 AAAATAT-TATAAATTT
1 AAAATATATACAAATTT
57681519 A
1 A
57681520 TAAAAACGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
16 9 0.28
17 6 0.19
18 2 0.06
19 11 0.34
20 4 0.12
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (17 bp):
AAAATATATACAAATTT
Found at i:57681687 original size:20 final size:20
Alignment explanation
Indices: 57681662--57681700 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
57681652 ATAAAAATTG
57681662 TAAAAT-TATGAAAAATATTT
1 TAAAATATA-GAAAAATATTT
*
57681682 TAAAATATAGAAAATTATT
1 TAAAATATAGAAAAATATT
57681701 AAAATTGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (20 bp):
TAAAATATAGAAAAATATTT
Found at i:57683508 original size:112 final size:111
Alignment explanation
Indices: 57683255--57683696 Score: 613
Period size: 117 Copynumber: 3.9 Consensus size: 111
57683245 ACACAGTACA
*
57683255 AATTTTTTTTGTGTCAGAATCAGATATAAAAATACGAAAAAAAT-AAAAAAAATTTT-GGTGCTG
1 AATTTTTTTCGTGTCAGAATCAGATATAAAAATACGAAAAAAATAAAAAAAAATTTTGGGTGCTG
*
57683318 GTCTGTCAATGGCC-GCACCCAGTACACAGTACAAAATTTTTTTTATTTTT
66 GCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAA----TTTT-TTTTT
*
57683368 ATTTTTTTTCGTGTCAGAATCAGATATAAAAATACGAAAAAAATAAAAAAAAATTTTTGGGTGCT
1 AATTTTTTTCGTGTCAGAATCAGATATAAAAATACGAAAAAAATAAAAAAAAA-TTTTGGGTGCT
* *
57683433 GGCCTGTCAATGGCCGGCACCCAGTACATAGTATAAAATTTTTTTTT
65 GGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAATTTTTTTTT
*
57683480 AATTTTTTTCGTGTCAGAATCAAATATAAAAATACGAAAAAAAATAAAAAAAAATTTTGGGTGCT
1 AATTTTTTTCGTGTCAGAATCAGATATAAAAATACG-AAAAAAATAAAAAAAAATTTTGGGTGCT
* * ****
57683545 GGCCTGTCAATGGCAGGTACCCAGTACACAGTACAAAGAAAAAAAATTTTT
65 GGCCTGTCAATGGCCGGCACCCAGTACACAGTAC----AAAATTTTTTTTT
*
57683596 AATTTTTTTTCGTGTCAGAATCAGATTTAAAAATACGAAAAAAATAAAAAAAAATTTTTGGGTGC
1 AA-TTTTTTTCGTGTCAGAATCAGATATAAAAATACGAAAAAAATAAAAAAAAA-TTTTGGGTGC
*
57683661 TGGCCTATCAATGGCCGGCACCCAGTACACAG-ACAA
64 TGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAA
57683697 GANNNNNNNN
Statistics
Matches: 298, Mismatches: 20, Indels: 23
0.87 0.06 0.07
Matches are distributed among these distances:
112 82 0.28
113 63 0.21
114 8 0.03
115 4 0.01
116 50 0.17
117 91 0.31
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.31
Consensus pattern (111 bp):
AATTTTTTTCGTGTCAGAATCAGATATAAAAATACGAAAAAAATAAAAAAAAATTTTGGGTGCTG
GCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAATTTTTTTTT
Found at i:57683633 original size:229 final size:224
Alignment explanation
Indices: 57683255--57683689 Score: 683
Period size: 229 Copynumber: 1.9 Consensus size: 224
57683245 ACACAGTACA
* * *
57683255 AATTTTTTTTGTGTCAGAATCAGATATAAAAATACGAAAAAAATAAAAAAAATTTTGGTGCTGGT
1 AATTTTTTTCGTGTCAGAATCAAATATAAAAATACGAAAAAAATAAAAAAAATTTTGGTGCTGGC
******
57683320 CTGTCAATGGCCGCACCCAGTACACAGTACAAAATTTTTTTTATTTTTATTTTTTTTCGTGTCAG
66 CTGTCAATGGCCGCACCCAGTACACAGTACAAAA-TAAAAAAATTTTTATTTTTTTTCGTGTCAG
*
57683385 AATCAGATATAAAAATACGAAAAAAATAAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGG
130 AATCAGATATAAAAATACGAAAAAAATAAAAAAAAATTTTTGGGTGCTGGCCTATCAATGGCCGG
57683450 CACCCAGTACATAGTATAAAATTTTTTTTT
195 CACCCAGTACATAGTATAAAATTTTTTTTT
57683480 AATTTTTTTCGTGTCAGAATCAAATATAAAAATACGAAAAAAAATAAAAAAAAATTTTGGGTGCT
1 AATTTTTTTCGTGTCAGAATCAAATATAAAAATACG-AAAAAAAT-AAAAAAAATTTT-GGTGCT
* *
57683545 GGCCTGTCAATGGCAGGTACCCAGTACACAGTACAAAGA-AAAAAAATTTTTAATTTTTTTTCGT
63 GGCCTGTCAATGGC-CGCACCCAGTACACAGTACAAA-ATAAAAAAATTTTT-ATTTTTTTTCGT
*
57683609 GTCAGAATCAGATTTAAAAATACGAAAAAAATAAAAAAAAATTTTTGGGTGCTGGCCTATCAATG
125 GTCAGAATCAGATATAAAAATACGAAAAAAATAAAAAAAAATTTTTGGGTGCTGGCCTATCAATG
57683674 GCCGGCACCCAGTACA
190 GCCGGCACCCAGTACA
57683690 CAGACAAGAN
Statistics
Matches: 191, Mismatches: 13, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
225 34 0.18
226 8 0.04
227 12 0.06
228 25 0.13
229 111 0.58
230 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (224 bp):
AATTTTTTTCGTGTCAGAATCAAATATAAAAATACGAAAAAAATAAAAAAAATTTTGGTGCTGGC
CTGTCAATGGCCGCACCCAGTACACAGTACAAAATAAAAAAATTTTTATTTTTTTTCGTGTCAGA
ATCAGATATAAAAATACGAAAAAAATAAAAAAAAATTTTTGGGTGCTGGCCTATCAATGGCCGGC
ACCCAGTACATAGTATAAAATTTTTTTTT
Found at i:57683635 original size:117 final size:116
Alignment explanation
Indices: 57683255--57683696 Score: 629
Period size: 112 Copynumber: 3.9 Consensus size: 116
57683245 ACACAGTACA
57683255 AATTTTTTTT-GTGTCAGAATCAGATATAAAAATACGAAAAAAAT-AAAAAAAA-TTTT-GGTGC
1 AATTTTTTTTCGTGTCAGAATCAGATATAAAAATACGAAAAAAATAAAAAAAAATTTTTGGGTGC
* ***
57683316 TGGTCTGTCAATGGCC-GCACCCAGTACACAGTACAAAATTTTTTTTATTTTT
66 TGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAA--AAATTTATTTTT
57683368 -ATTTTTTTTCGTGTCAGAATCAGATATAAAAATACGAAAAAAATAAAAAAAAATTTTTGGGTGC
1 AATTTTTTTTCGTGTCAGAATCAGATATAAAAATACGAAAAAAATAAAAAAAAATTTTTGGGTGC
* * *
57683432 TGGCCTGTCAATGGCCGGCACCCAGTACATAGT---ATAAAATTTTTTTTT
66 TGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAAAAATTTATTTTT
*
57683480 AA-TTTTTTTCGTGTCAGAATCAAATATAAAAATACGAAAAAAAATAAAAAAAAA-TTTTGGGTG
1 AATTTTTTTTCGTGTCAGAATCAGATATAAAAATACG-AAAAAAATAAAAAAAAATTTTTGGGTG
* * ***
57683543 CTGGCCTGTCAATGGCAGGTACCCAGTACACAGTACAAAGAAAAAAAATTTTT
65 CTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAA-AAAATTTATTTTT
*
57683596 AATTTTTTTTCGTGTCAGAATCAGATTTAAAAATACGAAAAAAATAAAAAAAAATTTTTGGGTGC
1 AATTTTTTTTCGTGTCAGAATCAGATATAAAAATACGAAAAAAATAAAAAAAAATTTTTGGGTGC
*
57683661 TGGCCTATCAATGGCCGGCACCCAGTACACAG-ACAA
66 TGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAA
57683697 GANNNNNNNN
Statistics
Matches: 295, Mismatches: 21, Indels: 23
0.87 0.06 0.07
Matches are distributed among these distances:
112 90 0.31
113 52 0.18
114 10 0.03
115 5 0.02
116 52 0.18
117 86 0.29
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.31
Consensus pattern (116 bp):
AATTTTTTTTCGTGTCAGAATCAGATATAAAAATACGAAAAAAATAAAAAAAAATTTTTGGGTGC
TGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAAAAATTTATTTTT
Found at i:57684665 original size:2 final size:2
Alignment explanation
Indices: 57684658--57684684 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
57684648 TGATTTTTGA
57684658 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
57684685 TATATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:57684689 original size:2 final size:2
Alignment explanation
Indices: 57684684--57684715 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
57684674 ACACACACAC
57684684 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
57684716 GCATTGGCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:57688612 original size:14 final size:14
Alignment explanation
Indices: 57688555--57688626 Score: 60
Period size: 14 Copynumber: 5.3 Consensus size: 14
57688545 GATTCAATGC
57688555 AAAAAA-AAAAACA
1 AAAAAAGAAAAACA
57688568 CAAAAAAG-AAAA-A
1 -AAAAAAGAAAAACA
** **
57688581 AAATTAGAAAAAGG
1 AAAAAAGAAAAACA
*
57688595 AAAAAAGAAGAACA
1 AAAAAAGAAAAACA
*
57688609 AAAAAATAAAAACA
1 AAAAAAGAAAAACA
57688623 AAAA
1 AAAA
57688627 GAAACAAAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
12 5 0.11
13 5 0.11
14 35 0.78
ACGTcount: A:0.82, C:0.06, G:0.08, T:0.04
Consensus pattern (14 bp):
AAAAAAGAAAAACA
Found at i:57688630 original size:40 final size:40
Alignment explanation
Indices: 57688555--57688630 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 40
57688545 GATTCAATGC
*
57688555 AAAAAAAAAAACACAAAAAAGAAAAAAAATTAGAAAAAGG
1 AAAAAAAAAAACACAAAAAAGAAAAAAAATAAGAAAAAGG
* *
57688595 AAAAAAGAAGAACA-AAAAAATAAAAACAAA-AAGAAA
1 AAAAAA-AAAAACACAAAAAAGAAAAA-AAATAAGAAA
57688631 CAAAAAACTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
40 22 0.71
41 9 0.29
ACGTcount: A:0.82, C:0.05, G:0.09, T:0.04
Consensus pattern (40 bp):
AAAAAAAAAAACACAAAAAAGAAAAAAAATAAGAAAAAGG
Found at i:57690934 original size:50 final size:49
Alignment explanation
Indices: 57690764--57690934 Score: 148
Period size: 50 Copynumber: 3.4 Consensus size: 49
57690754 GCAGCGAAAC
* * *
57690764 AGATTGAAGCCACGACGGCAGATCTGGTTTCCCCGACATTGCAATTGGAT
1 AGATTGAAGCCACAACGGCGGATCTGGTTTCCCCGACATT-CAATTGAAT
* * *** * * *
57690814 AGATTGAAGCCGCAACGGCGAATCTTACTT-CCCTAGCGATGT-AGTGGAAT
1 AGATTGAAGCCACAACGGCGGATCTGGTTTCCCCGA-C-AT-TCAATTGAAT
* * * *
57690864 AGATTGAAGCTACGACGGCGGATCTGGTTTCCCCGACATTACAATTAAAA
1 AGATTGAAGCCACAACGGCGGATCTGGTTTCCCCGACATT-CAATTGAAT
57690914 AGATTGAAGCCACAACGGCGG
1 AGATTGAAGCCACAACGGCGG
57690935 GTCTTATTTT
Statistics
Matches: 90, Mismatches: 25, Indels: 12
0.71 0.20 0.09
Matches are distributed among these distances:
48 1 0.01
49 6 0.07
50 76 0.84
51 6 0.07
52 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (49 bp):
AGATTGAAGCCACAACGGCGGATCTGGTTTCCCCGACATTCAATTGAAT
Found at i:57690983 original size:100 final size:100
Alignment explanation
Indices: 57690606--57690988 Score: 421
Period size: 100 Copynumber: 3.8 Consensus size: 100
57690596 TTGGCATTGT
* * ** * *
57690606 AATTTAAAAGATTGAAGTCACAACGGTAGATCTTA-TCTCCCTGGCGGTGCAGAGGAACAGATTG
1 AATTAAAAAGATTGAAGCCACAACGGCGGATCTTACT-TCCCTGGCGATGCAGTGGAACAGATTG
* *
57690670 AAGCTACGACGGCTGATCTGG-TTCTCCCGACATTAC
65 AAGCCACGACGGCGGATCTGGTTTC-CCCGACATTAC
* * * * * * * *
57690706 GATTTAAAAGATTAAAGCCACAATGGCAGATCTTACCTCCCTGGCGATGCAGCGAAACAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGATGCAGTGGAACAGATTGA
* *
57690771 AGCCACGACGGCAGATCTGGTTTCCCCGACATTGC
66 AGCCACGACGGCGGATCTGGTTTCCCCGACATTAC
** * * * * * *
57690806 AATTGGATAGATTGAAGCCGCAACGGCGAATCTTACTTCCCTAGCGATGTAGTGGAATAGATTGA
1 AATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGATGCAGTGGAACAGATTGA
*
57690871 AGCTACGACGGCGGATCTGGTTTCCCCGACATTAC
66 AGCCACGACGGCGGATCTGGTTTCCCCGACATTAC
* * ** *
57690906 AATTAAAAAGATTGAAGCCACAACGGCGGGTCTTATTTTTCTGGC-ATCGCAGTGGAGCAGATTG
1 AATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGAT-GCAGTGGAACAGATTG
*
57690970 AAGCCACGACGGCGAATCT
65 AAGCCACGACGGCGGATCT
57690989 TATCTCTCTA
Statistics
Matches: 235, Mismatches: 45, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
99 2 0.01
100 230 0.98
101 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (100 bp):
AATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGATGCAGTGGAACAGATTGA
AGCCACGACGGCGGATCTGGTTTCCCCGACATTAC
Found at i:57694178 original size:101 final size:101
Alignment explanation
Indices: 57693824--57694465 Score: 939
Period size: 101 Copynumber: 6.4 Consensus size: 101
57693814 NNNNNNNNNN
*
57693824 TTGAAGCTACGACAGCGGATCTGGTTTCCCCGACATTGCAATTAAAAAAGATTGAAGCCACAACG
1 TTGAAGCTACGACGGCGGATCTGGTTTCCCCGACATTGCAATT-AAAAAGATTGAAGCCACAACG
* * *
57693889 GCCGATCTTACTTCTTTGGCGATGTAGT-GGAACAA-A
65 GCGGATCTTACTTCCTTGGCGGTGTAGTAGGAA-AAGA
* * *
57693925 TTGAAGCTACGACAGTGGATCTGGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAACGG
1 TTGAAGCTACGACGGCGGATCTGGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGG
* **
57693990 CGGATCTTACTTCCTTAGCGGTGTAGT-GGATTAGA
66 CGGATCTTACTTCCTTGGCGGTGTAGTAGGAAAAGA
* * *
57694025 TTGAAGCTACGACGGTGAATCTGGTTTCCCCGAAATTGCAATTAAAAAGATTGAAGCCACAACGG
1 TTGAAGCTACGACGGCGGATCTGGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGG
*
57694090 CGGATCTTACTTCCTTGGCAGTGTAGTAGGAAAAGA
66 CGGATCTTACTTCCTTGGCGGTGTAGTAGGAAAAGA
* *
57694126 TTGAAGCTATGACGGCGGATCTGGTTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGG
1 TTGAAGCTACGACGGCGGATCTGGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGG
*
57694191 CGGATCTTACTTCCTTGGCGGTGTAGTAGGAACAGA
66 CGGATCTTACTTCCTTGGCGGTGTAGTAGGAAAAGA
* * *
57694227 TTAAAGCTACGACGACGGATCTGGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCATAACGG
1 TTGAAGCTACGACGGCGGATCTGGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGG
*
57694292 CGGATCTTACTTCCTTGGCGGTGTAGTAGGAATAGA
66 CGGATCTTACTTCCTTGGCGGTGTAGTAGGAAAAGA
* * * * *
57694328 TTGAAGCTACGACGGCAGATTTGGTTTTCCTGACATTGCAATTAAAAAGATTGAAGTCACAACGG
1 TTGAAGCTACGACGGCGGATCTGGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGG
* * * * *
57694393 TGAATCTTACTTTCTTGGCGGTGTAGTAAGAACAGA
66 CGGATCTTACTTCCTTGGCGGTGTAGTAGGAAAAGA
* * *
57694429 TTAAAGCCACGACGGCGGATCTTGTTTCCCCGACATT
1 TTGAAGCTACGACGGCGGATCTGGTTTCCCCGACATT
57694466 ACAGCTAAAC
Statistics
Matches: 490, Mismatches: 49, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
99 1 0.00
100 135 0.28
101 354 0.72
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.26
Consensus pattern (101 bp):
TTGAAGCTACGACGGCGGATCTGGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGG
CGGATCTTACTTCCTTGGCGGTGTAGTAGGAAAAGA
Found at i:57696272 original size:25 final size:27
Alignment explanation
Indices: 57696208--57696268 Score: 122
Period size: 27 Copynumber: 2.3 Consensus size: 27
57696198 TATAATCCGA
57696208 ATATATATACATTTTTTTATAATATAT
1 ATATATATACATTTTTTTATAATATAT
57696235 ATATATATACATTTTTTTATAATATAT
1 ATATATATACATTTTTTTATAATATAT
57696262 ATATATA
1 ATATATA
57696269 CATTCACTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (27 bp):
ATATATATACATTTTTTTATAATATAT
Found at i:57696464 original size:2 final size:2
Alignment explanation
Indices: 57696459--57696496 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
57696449 ACACACACAC
57696459 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
57696497 GCATTAGCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:57697810 original size:14 final size:14
Alignment explanation
Indices: 57697791--57697827 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
57697781 AAAATTATCC
57697791 CTCCTTTTATTCAT
1 CTCCTTTTATTCAT
57697805 CTCC-TTTATTCAT
1 CTCCTTTTATTCAT
*
57697818 -TCCTATTATT
1 CTCCTTTTATT
57697828 TCCTTCATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
12 3 0.14
13 14 0.67
14 4 0.19
ACGTcount: A:0.16, C:0.27, G:0.00, T:0.57
Consensus pattern (14 bp):
CTCCTTTTATTCAT
Found at i:57703105 original size:188 final size:186
Alignment explanation
Indices: 57702677--57703228 Score: 698
Period size: 188 Copynumber: 2.9 Consensus size: 186
57702667 GTTTGAGGGT
* * * *
57702677 AGTGAATCTGATTCTGATGCTGATAGAGCAAGAAGG-CATAAAAAGGAATTGATTAATG-AAGGT
1 AGTGAATCTGATTCTGATGCTGACAGAGC-A-AAGGTCATAAGAAGGAAATGGTTAA-GAAAGGT
* * * *
57702740 CGTCAAATGCATGACTCCAGTGAGGGTGACTCTGATTCTGATGGTGGGAGGCAAAAGAAGAGAGG
63 CGTCATAGGCATGACTCCAGTGAGGATGACTCTGATTCTGATGGTGAGAGGCAAAAGAAGAGAGG
* * ** * *
57702805 TGAAGTTTAAAAACTGAAGATTGAGTCAACTAGGAGCCAGAGGAGAGAGAGGGACATGTGT
128 TGAAG-TTCAAAA-GGAAGATTGAGTTGACTGGGAGCCAGAGGAGAGAGAGGGACATGTGA
*
57702866 AGTGAATCTGATTCTGATGCTGACAGAGCAAGAGGTCAT-AGAAAAGAAATGGTTAAGAAAGGTC
1 AGTGAATCTGATTCTGATGCTGACAGAGCAA-AGGTCATAAG-AAGGAAATGGTTAAGAAAGGTC
** ** *
57702930 GTCATAGGCACAACTCCAGTGAGGACAACTTTGATTCTGATGGTGAGAGGCAAAAGAAGAGAGGT
64 GTCATAGGCATGACTCCAGTGAGGATGACTCTGATTCTGATGGTGAGAGGCAAAAGAAGAGAGGT
57702995 GAAGTTCAAAAGGAAAGATTGAGTTGACTGGGAGCCAGAGGAGAGAGAGGGACATGCT-A
129 GAAGTTCAAAAGG-AAGATTGAGTTGACTGGGAGCCAGAGGAGAGAGAGGGACATG-TGA
* *
57703054 AGTGAATCTGATTCTGATACTGACAGAGCGAAAGGTCGTAAGAAGGAAATGGTTAAGAAAGGTCG
1 AGTGAATCTGATTCTGATGCTGACAGAGC-AAAGGTCATAAGAAGGAAATGGTTAAGAAAGGTCG
* * * * * *
57703119 TCGTAGGAATGACTCCAGTGAAGATGACTCTGATTCTAATGTTGAGAGGAAAAAGAAGAGAGGTG
65 TCATAGGCATGACTCCAGTGAGGATGACTCTGATTCTGATGGTGAGAGGCAAAAGAAGAGAGGTG
* *
57703184 AAGTTCAGAAAGGGAAGATCGAGTTGAATGGGAGCCAGAGGAGAG
130 AAGTTCA-AAA-GGAAGATTGAGTTGACTGGGAGCCAGAGGAGAG
57703229 GTAGTGATAG
Statistics
Matches: 317, Mismatches: 36, Indels: 20
0.85 0.10 0.05
Matches are distributed among these distances:
187 2 0.01
188 168 0.53
189 145 0.46
190 2 0.01
ACGTcount: A:0.36, C:0.11, G:0.32, T:0.20
Consensus pattern (186 bp):
AGTGAATCTGATTCTGATGCTGACAGAGCAAAGGTCATAAGAAGGAAATGGTTAAGAAAGGTCGT
CATAGGCATGACTCCAGTGAGGATGACTCTGATTCTGATGGTGAGAGGCAAAAGAAGAGAGGTGA
AGTTCAAAAGGAAGATTGAGTTGACTGGGAGCCAGAGGAGAGAGAGGGACATGTGA
Found at i:57703958 original size:39 final size:39
Alignment explanation
Indices: 57703899--57704056 Score: 192
Period size: 39 Copynumber: 4.0 Consensus size: 39
57703889 CCAAAGCTTA
* *
57703899 TGGGGAGAATGATGATCGGAATAGGGGTGAATATTCTAGG
1 TGGGGA-AAAGATGATCGGAATAGGGATGAATATTCTAGG
** * *
57703939 TGGGGGGAAGATGACCGGAATAAGGATGAATATTCTAGG
1 TGGGGAAAAGATGATCGGAATAGGGATGAATATTCTAGG
* *
57703978 TGGGGAAAAGATGATCAGAAGAGGGATGAATATTCTAGG
1 TGGGGAAAAGATGATCGGAATAGGGATGAATATTCTAGG
* * *
57704017 T-GGGAGAAAGATGATCTGAAAAGGGATGATTATTCTAGG
1 TGGGGA-AAAGATGATCGGAATAGGGATGAATATTCTAGG
57704056 T
1 T
57704057 CAGTTAGGTC
Statistics
Matches: 102, Mismatches: 15, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
38 4 0.04
39 93 0.91
40 5 0.05
ACGTcount: A:0.34, C:0.06, G:0.37, T:0.23
Consensus pattern (39 bp):
TGGGGAAAAGATGATCGGAATAGGGATGAATATTCTAGG
Found at i:57704044 original size:78 final size:79
Alignment explanation
Indices: 57703899--57704056 Score: 212
Period size: 78 Copynumber: 2.0 Consensus size: 79
57703889 CCAAAGCTTA
* * * * * *
57703899 TGGGGAGAATGATGATCGGAATAGGGGTGAATATTCTAGGTGGGGGGAAGATGACCGGAATAAGG
1 TGGGGAGAAAGATGATCAGAAGAGGGATGAATATTCTAGGTGGGAGAAAGATGACCGGAATAAGG
57703964 ATGAATATTCTAGG
66 ATGAATATTCTAGG
* *
57703978 TGGGGA-AAAGATGATCAGAAGAGGGATGAATATTCTAGGTGGGAGAAAGATGATCTGAA-AAGG
1 TGGGGAGAAAGATGATCAGAAGAGGGATGAATATTCTAGGTGGGAGAAAGATGACCGGAATAA-G
*
57704041 GATGATTATTCTAGG
65 GATGAATATTCTAGG
57704056 T
1 T
57704057 CAGTTAGGTC
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
77 2 0.03
78 61 0.88
79 6 0.09
ACGTcount: A:0.34, C:0.06, G:0.37, T:0.23
Consensus pattern (79 bp):
TGGGGAGAAAGATGATCAGAAGAGGGATGAATATTCTAGGTGGGAGAAAGATGACCGGAATAAGG
ATGAATATTCTAGG
Found at i:57719281 original size:46 final size:46
Alignment explanation
Indices: 57719208--57719300 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
57719198 ACATTGCTAT
*
57719208 AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACGTTTCAC
*
57719254 AACTCAGTATGGTTTTCTTTATC-GAAATACCATACCTACGTTTCAC
1 AACTCAGTATGGTTTTCTTCA-CGGAAATACCATACCTACGTTTCAC
57719300 A
1 A
57719301 CTTTTCCATG
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
46 43 0.98
47 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACGTTTCAC
Found at i:57720549 original size:17 final size:17
Alignment explanation
Indices: 57720523--57720555 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
57720513 AAATTCTTTT
*
57720523 TAAATTACAAAATTCAA
1 TAAATCACAAAATTCAA
57720540 TAAATCACAAAATTCA
1 TAAATCACAAAATTCA
57720556 CAAATTCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (17 bp):
TAAATCACAAAATTCAA
Found at i:57722286 original size:53 final size:54
Alignment explanation
Indices: 57722214--57722319 Score: 169
Period size: 53 Copynumber: 2.0 Consensus size: 54
57722204 GGCCCATTTT
** *
57722214 TATTTTAAAAATTTTAAAAAATTAAAAAAACGTATTTTAAAAATATTTTAAAAA
1 TATTTTAAAAATTAAAAAAAATTAAAAAAAAGTATTTTAAAAATATTTTAAAAA
*
57722268 TATTTT-AAAATTAAAAAAAATTAAAAAAAAGTATTTTTAAAATATTTTAAAA
1 TATTTTAAAAATTAAAAAAAATTAAAAAAAAGTATTTTAAAAATATTTTAAAA
57722320 TTAAAAAAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
53 42 0.88
54 6 0.12
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.39
Consensus pattern (54 bp):
TATTTTAAAAATTAAAAAAAATTAAAAAAAAGTATTTTAAAAATATTTTAAAAA
Found at i:57722297 original size:41 final size:40
Alignment explanation
Indices: 57722214--57722408 Score: 241
Period size: 41 Copynumber: 4.8 Consensus size: 40
57722204 GGCCCATTTT
* **
57722214 TATTTTAAAAAT-TTTAAAAAATTAAAAAAACGTATTTTAAAAA
1 TATTTTAAAAATATTT-TAAAATTAAAAAAA---ATTAAAAAAA
57722257 TATTTTAAAAATATTTTAAAATTAAAAAAAATTAAAAAAAA
1 TATTTTAAAAATATTTTAAAATTAAAAAAAATT-AAAAAAA
* *
57722298 GTATTTTTAAAATATTTTAAAATT-AAAAAAATTAAAAAAG
1 -TATTTTAAAAATATTTTAAAATTAAAAAAAATTAAAAAAA
*
57722338 TATTTTAAAAATATTTTAAAATTTAAAAAAAATTAAAAAAG
1 TATTTTAAAAATATTTTAAAA-TTAAAAAAAATTAAAAAAA
* *
57722379 TATGTAAAAAATATTTTAAAATTAAAAAAA
1 TATTTTAAAAATATTTTAAAATTAAAAAAA
57722409 TAAATATATT
Statistics
Matches: 139, Mismatches: 8, Indels: 13
0.87 0.05 0.08
Matches are distributed among these distances:
39 20 0.14
40 20 0.14
41 49 0.35
42 22 0.16
43 25 0.18
44 3 0.02
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.36
Consensus pattern (40 bp):
TATTTTAAAAATATTTTAAAATTAAAAAAAATTAAAAAAA
Found at i:57722399 original size:11 final size:11
Alignment explanation
Indices: 57722214--57722358 Score: 73
Period size: 11 Copynumber: 13.9 Consensus size: 11
57722204 GGCCCATTTT
57722214 TATTTT-AAAA
1 TATTTTAAAAA
57722224 -ATTTTAAAAA
1 TATTTTAAAAA
**
57722234 -ATTAAAAAAA
1 TATTTTAAAAA
57722244 CGTATTTTAAAAA
1 --TATTTTAAAAA
57722257 TATTTTAAAAA
1 TATTTTAAAAA
57722268 TATTTT--AAA
1 TATTTTAAAAA
*
57722277 -A-TTAAAAAA
1 TATTTTAAAAA
* **
57722286 AATTAAAAAAAA
1 TATT-TTAAAAA
*
57722298 GTATTTTTAAAA
1 -TATTTTAAAAA
57722310 TATTTT--AAA
1 TATTTTAAAAA
57722319 -A--TTAAAAA
1 TATTTTAAAAA
* *
57722327 -AATTAAAAAA
1 TATTTTAAAAA
57722337 GTATTTTAAAAA
1 -TATTTTAAAAA
57722349 TATTTTAAAA
1 TATTTTAAAA
57722359 TTTAAAAAAA
Statistics
Matches: 106, Mismatches: 13, Indels: 31
0.71 0.09 0.21
Matches are distributed among these distances:
6 2 0.02
7 2 0.02
8 6 0.06
9 14 0.13
10 19 0.18
11 34 0.32
12 18 0.17
13 11 0.10
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.38
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:57725568 original size:45 final size:45
Alignment explanation
Indices: 57725515--57725621 Score: 162
Period size: 45 Copynumber: 2.4 Consensus size: 45
57725505 GTAACGGTAG
*
57725515 CAGTAACAGTAACAGTGA-CAGTATTCAACACACAAAGTGCTGAAT
1 CAGTAACAGTAACAGT-ACCAGTATTCAACACACAAAGTGCCGAAT
* * *
57725560 CTGTAACAGTAACGGTACCAGTATTCGACACACAAAGTGCCGAAT
1 CAGTAACAGTAACAGTACCAGTATTCAACACACAAAGTGCCGAAT
57725605 CAGTAACAGTAACAGTA
1 CAGTAACAGTAACAGTA
57725622 GTCGGCACAT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
44 1 0.02
45 54 0.98
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.20
Consensus pattern (45 bp):
CAGTAACAGTAACAGTACCAGTATTCAACACACAAAGTGCCGAAT
Found at i:57725609 original size:39 final size:38
Alignment explanation
Indices: 57725566--57725648 Score: 103
Period size: 39 Copynumber: 2.2 Consensus size: 38
57725556 GAATCTGTAA
* * *
57725566 CAGTAACGGTACCAGTATTCGACACACAAAGTGCCGAAT
1 CAGTAACAGTAACAGTAGTCGACACA-AAAGTGCCGAAT
* * *
57725605 CAGTAACAGTAACAGTAGTCGGCACATAAGTGCCTAAT
1 CAGTAACAGTAACAGTAGTCGACACAAAAGTGCCGAAT
57725643 CAGTAA
1 CAGTAA
57725649 GCTGGCAATT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
38 16 0.42
39 22 0.58
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.19
Consensus pattern (38 bp):
CAGTAACAGTAACAGTAGTCGACACAAAAGTGCCGAAT
Found at i:57725644 original size:38 final size:39
Alignment explanation
Indices: 57725521--57725648 Score: 114
Period size: 45 Copynumber: 3.2 Consensus size: 39
57725511 GTAGCAGTAA
* * * *
57725521 CAGTAACAGTGACAGTATTCAACACACAAAGTGCTGAAT
1 CAGTAACAGTAACAGTAGTCGACACACAAAGTGCCGAAT
* *
57725560 CTGTAACAGTAACGGTACCAGTATTCGACACACAAAGTGCCGAAT
1 CAGTAACAGT-A----A-CAGTAGTCGACACACAAAGTGCCGAAT
* * *
57725605 CAGTAACAGTAACAGTAGTCGGCACA-TAAGTGCCTAAT
1 CAGTAACAGTAACAGTAGTCGACACACAAAGTGCCGAAT
57725643 CAGTAA
1 CAGTAA
57725649 GCTGGCAATT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 16 0.22
39 21 0.28
40 1 0.01
44 2 0.03
45 34 0.46
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (39 bp):
CAGTAACAGTAACAGTAGTCGACACACAAAGTGCCGAAT
Found at i:57726050 original size:26 final size:25
Alignment explanation
Indices: 57726021--57726070 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
57726011 CAATTCAATG
57726021 ATTCAATTCAAAC-CATTTCAATTTCT
1 ATTCAA-T-AAACACATTTCAATTTCT
*
57726047 ATTCAATAATCACATTTCAATTTC
1 ATTCAATAAACACATTTCAATTTC
57726071 ACTTTCTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 13 0.59
26 6 0.27
ACGTcount: A:0.36, C:0.22, G:0.00, T:0.42
Consensus pattern (25 bp):
ATTCAATAAACACATTTCAATTTCT
Found at i:57726558 original size:18 final size:19
Alignment explanation
Indices: 57726537--57726574 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
57726527 TATTTACTTA
*
57726537 AATAATAAGTAA-ATATGT
1 AATAATAACTAACATATGT
*
57726555 AATAATTACTAACATATGT
1 AATAATAACTAACATATGT
57726574 A
1 A
57726575 TTTTATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.53, C:0.05, G:0.08, T:0.34
Consensus pattern (19 bp):
AATAATAACTAACATATGT
Found at i:57726647 original size:3 final size:3
Alignment explanation
Indices: 57726639--57726702 Score: 72
Period size: 3 Copynumber: 24.0 Consensus size: 3
57726629 TATTTAAAAT
57726639 ATA ATA AT- ATA ATA AT- ATA ATA ATA AT- ATA AT- ATA AT- ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
57726681 ATA AT- ATA ATA A-A ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA
57726703 TACTCTCAGA
Statistics
Matches: 53, Mismatches: 0, Indels: 16
0.77 0.00 0.23
Matches are distributed among these distances:
2 16 0.30
3 37 0.70
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:57726649 original size:8 final size:8
Alignment explanation
Indices: 57726636--57726704 Score: 90
Period size: 8 Copynumber: 8.8 Consensus size: 8
57726626 GTTTATTTAA
57726636 AATATAAT
1 AATATAAT
57726644 AATATAAT
1 AATATAAT
57726652 AATATAAT
1 AATATAAT
57726660 AATA-ATAT
1 AATATA-AT
57726668 AATATAAT
1 AATATAAT
57726676 -ATA-ATAT
1 AATATA-AT
57726683 AATATAAT
1 AATATAAT
*
57726691 AAAATAAT
1 AATATAAT
57726699 AATATA
1 AATATA
57726705 CTCTCAGATC
Statistics
Matches: 54, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
6 1 0.02
7 6 0.11
8 45 0.83
9 2 0.04
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
AATATAAT
Found at i:57726650 original size:5 final size:5
Alignment explanation
Indices: 57726636--57726704 Score: 86
Period size: 5 Copynumber: 13.2 Consensus size: 5
57726626 GTTTATTTAA
57726636 AATAT AATA- ATATAAT AATAT AATAAT AATAT AATAT AATAT AATAT
1 AATAT AATAT A-AT-AT AATAT AAT-AT AATAT AATAT AATAT AATAT
*
57726683 AATAT AATAA AATAAT AATAT A
1 AATAT AATAT AAT-AT AATAT A
57726705 CTCTCAGATC
Statistics
Matches: 57, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
4 1 0.02
5 43 0.75
6 12 0.21
7 1 0.02
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (5 bp):
AATAT
Found at i:57727302 original size:20 final size:20
Alignment explanation
Indices: 57727277--57727315 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
57727267 ATAAAAATTG
57727277 TAAAAT-TATGAAAAATATTT
1 TAAAATATA-GAAAAATATTT
*
57727297 TAAAATATAGAAAATTATT
1 TAAAATATAGAAAAATATT
57727316 AAAATTGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (20 bp):
TAAAATATAGAAAAATATTT
Found at i:57730465 original size:13 final size:14
Alignment explanation
Indices: 57730441--57730474 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
57730431 ATGGGGGTAG
*
57730441 GATTCTGTATATTT
1 GATTCTGCATATTT
57730455 G-TTCTGCATATTT
1 GATTCTGCATATTT
57730468 GATTCTG
1 GATTCTG
57730475 TTATCTGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.53
Consensus pattern (14 bp):
GATTCTGCATATTT
Found at i:57735666 original size:50 final size:50
Alignment explanation
Indices: 57735594--57735783 Score: 175
Period size: 50 Copynumber: 3.7 Consensus size: 50
57735584 CCTGTACTAT
* * * *
57735594 CAATGCCATATCTCAGATATGGTCTTACATGAGAGTTCTCATATCAGTGC
1 CAATGCCATATCCCAGACATGGTCTTACATGGGAGCTCTCATATCAGTGC
* * * * * * *
57735644 CTATGCCATGTCCCAGACATGGTCTTAC-CGGGGGCCTCTCATCTCGGCGC
1 CAATGCCATATCCCAGACATGGTCTTACATGGGAG-CTCTCATATCAGTGC
* *
57735694 CAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATAATGC
1 CAATGCCATATCCCAGACATGGTCTTACATGGGAGCTCTCAT-A--TC---AGTGC
* *
57735750 CAATTCCATGTCCCAGACATGGTCTTACATGGGA
1 CAATGCCATATCCCAGACATGGTCTTACATGGGA
57735784 TCTCATCCCC
Statistics
Matches: 110, Mismatches: 22, Indels: 10
0.77 0.15 0.07
Matches are distributed among these distances:
49 3 0.03
50 68 0.62
51 3 0.03
53 2 0.02
56 34 0.31
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (50 bp):
CAATGCCATATCCCAGACATGGTCTTACATGGGAGCTCTCATATCAGTGC
Found at i:57738506 original size:24 final size:24
Alignment explanation
Indices: 57738471--57738529 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
57738461 ATGAAGAACG
* * * *
57738471 AGAATGAAAGTGTGAGTGTGAGTA
1 AGAATGAGAGTGTGAGCGAGAATA
*
57738495 AGAATGAGAGTGTGAGCGAGAATG
1 AGAATGAGAGTGTGAGCGAGAATA
57738519 AGAATGAGAGT
1 AGAATGAGAGT
57738530 CATGACAAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.39, C:0.02, G:0.39, T:0.20
Consensus pattern (24 bp):
AGAATGAGAGTGTGAGCGAGAATA
Found at i:57738507 original size:18 final size:18
Alignment explanation
Indices: 57738484--57738521 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
57738474 ATGAAAGTGT
*
57738484 GAGTGTGAGTAAGAATGA
1 GAGTGTGAGCAAGAATGA
*
57738502 GAGTGTGAGCGAGAATGA
1 GAGTGTGAGCAAGAATGA
57738520 GA
1 GA
57738522 ATGAGAGTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.37, C:0.03, G:0.42, T:0.18
Consensus pattern (18 bp):
GAGTGTGAGCAAGAATGA
Found at i:57752791 original size:2 final size:2
Alignment explanation
Indices: 57752784--57752810 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
57752774 AATACAATTC
57752784 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
57752811 AAGCATGTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:57759590 original size:17 final size:16
Alignment explanation
Indices: 57759570--57759634 Score: 58
Period size: 17 Copynumber: 3.8 Consensus size: 16
57759560 AAAATAATAC
57759570 AAATATATACAAATTTA
1 AAATATATA-AAATTTA
*
57759587 AAATATTATAAAGTTATAA
1 AAATA-TATAAAATT-T-A
* *
57759606 AAACATATAAAAGTTA
1 AAATATATAAAATTTA
57759622 AAATAATATAAAA
1 AAAT-ATATAAAA
57759635 AACATATTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
16 4 0.10
17 18 0.46
18 12 0.31
19 5 0.13
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (16 bp):
AAATATATAAAATTTA
Found at i:57759618 original size:19 final size:17
Alignment explanation
Indices: 57759546--57759634 Score: 56
Period size: 19 Copynumber: 4.9 Consensus size: 17
57759536 ATATTTTATA
57759546 TTAAAAATAATATAAAA-
1 TTAAAAA-AATATAAAAG
* *
57759563 ATAATACAAATATATACAAAT
1 TTAA-A-AAA-ATATA-AAAG
* *
57759584 TTAAAATATTAT-AAAG
1 TTAAAAAAATATAAAAG
57759600 TTATAAAAACATATAAAAG
1 TTA-AAAAA-ATATAAAAG
*
57759619 TTAAAATAATATAAAA
1 TTAAAAAAATATAAAA
57759635 AACATATTAT
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
16 6 0.11
17 15 0.27
18 12 0.21
19 16 0.29
20 4 0.07
21 3 0.05
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.30
Consensus pattern (17 bp):
TTAAAAAAATATAAAAG
Found at i:57759664 original size:9 final size:9
Alignment explanation
Indices: 57759554--57759675 Score: 51
Period size: 9 Copynumber: 13.3 Consensus size: 9
57759544 TATTAAAAAT
57759554 AATATA-AA
1 AATATATAA
57759562 AATA-ATACA
1 AATATATA-A
57759571 AATATATACA
1 AATATATA-A
57759581 AAT-T-TAA
1 AATATATAA
57759588 AATATTATAA
1 AATA-TATAA
*
57759598 AGT-TATAAA
1 AATATAT-AA
*
57759607 AACATATAA
1 AATATATAA
*
57759616 AAGT-TAAAA
1 AA-TATATAA
*
57759625 TAATATAAAA
1 -AATATATAA
*
57759635 AACATATTATA
1 AATATA-TA-A
*
57759646 AATGAAATAA
1 AAT-ATATAA
57759656 AATATATAA
1 AATATATAA
*
57759665 ACTATA-AA
1 AATATATAA
57759673 AAT
1 AAT
57759676 TATTAAAAAT
Statistics
Matches: 88, Mismatches: 12, Indels: 28
0.69 0.09 0.22
Matches are distributed among these distances:
7 5 0.06
8 14 0.16
9 34 0.39
10 28 0.32
11 5 0.06
12 2 0.02
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (9 bp):
AATATATAA
Found at i:57759824 original size:21 final size:21
Alignment explanation
Indices: 57759798--57759873 Score: 59
Period size: 21 Copynumber: 3.7 Consensus size: 21
57759788 TAAAATATAG
57759798 AAAATTATTAAAATTGTTAAT
1 AAAATTATTAAAATTGTTAAT
* * *
57759819 AAAATT-TTAAAACTATTATAA
1 AAAATTATTAAAATTGTTA-AT
** *
57759840 AAAAGCA-TAAATTTGTTAAT
1 AAAATTATTAAAATTGTTAAT
57759860 AAAA-TATTTAAAAT
1 AAAATTA-TTAAAAT
57759874 AATTAACTTA
Statistics
Matches: 40, Mismatches: 11, Indels: 8
0.68 0.19 0.14
Matches are distributed among these distances:
19 1 0.03
20 15 0.38
21 24 0.60
ACGTcount: A:0.55, C:0.03, G:0.04, T:0.38
Consensus pattern (21 bp):
AAAATTATTAAAATTGTTAAT
Found at i:57766063 original size:21 final size:18
Alignment explanation
Indices: 57766025--57766064 Score: 53
Period size: 21 Copynumber: 2.1 Consensus size: 18
57766015 ATTTCAAAAC
57766025 TTAAGTATTTTAAAACAA
1 TTAAGTATTTTAAAACAA
57766043 TTAAGGTATTATTATAAACAA
1 TTAA-GTATT-TTA-AAACAA
57766064 T
1 T
57766065 GACATTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 5 0.26
20 3 0.16
21 7 0.37
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.40
Consensus pattern (18 bp):
TTAAGTATTTTAAAACAA
Found at i:57770381 original size:51 final size:51
Alignment explanation
Indices: 57770075--57770510 Score: 230
Period size: 51 Copynumber: 8.6 Consensus size: 51
57770065 GATACCGGTT
* * * * * *
57770075 CACATAGTAGCATGCACATAGTACTACACAGGTGACCATCA-TTATCCAATA
1 CACATAGTAGCCTTCACTTAGTACTACACATGTGACCATAATTTAT-CGATA
* * * * * * * ** *
57770126 CACGTAATAGCCTGCACATAGTACTACACACGTGATC-GAAGCTATCCGGTA
1 CACATAGTAGCCTTCACTTAGTACTACACATGTGACCATAATTTAT-CGATA
* * * * * * * * *
57770177 CGCATAGTAGCCTGCACATATTACTACATATGCGACCTATCA-TTCT-GGTA
1 CACATAGTAGCCTTCACTTAGTACTACACATGTGACC-ATAATTTATCGATA
* * * * * * * *
57770227 CACGTAGTAGCCTACACATAGTACTACACACGTGATCA-ACTTT-TACGGTT
1 CACATAGTAGCCTTCACTTAGTACTACACATGTGACCATAATTTAT-CGATA
** * * *
57770277 CACGA-AGTAGCCTTCACACAGTACTACACACGTGATCA-AAGCTTT-TCGGTA
1 CAC-ATAGTAGCCTTCACTTAGTACTACACATGTGACCATAA--TTTATCGATA
* * *
57770328 CACATAGTATCCTTCACTTAGTACCACACATGTGACCATCATTTATCGATA
1 CACATAGTAGCCTTCACTTAGTACTACACATGTGACCATAATTTATCGATA
* * * * *
57770379 CACGTAGTAGCCTTAACAC-T-GTACTACACACGTGACCA-AAGCTTCTCGGTA
1 CACATAGTAGCCTT--CACTTAGTACTACACATGTGACCATAA-TTTATCGATA
* *
57770430 CACATTGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATA
1 CACATAGTAGCCTTCACTTAGTACTACACATGTGACCATAATTTATCGATA
* * **
57770481 CACGTAGTAGTCTTCACACAGTACTACACA
1 CACATAGTAGCCTTCACTTAGTACTACACA
57770511 CGTGTTCATC
Statistics
Matches: 301, Mismatches: 66, Indels: 36
0.75 0.16 0.09
Matches are distributed among these distances:
48 1 0.00
49 6 0.02
50 78 0.26
51 203 0.67
52 9 0.03
53 4 0.01
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (51 bp):
CACATAGTAGCCTTCACTTAGTACTACACATGTGACCATAATTTATCGATA
Found at i:57770412 original size:102 final size:102
Alignment explanation
Indices: 57770219--57770514 Score: 407
Period size: 102 Copynumber: 2.9 Consensus size: 102
57770209 CGACCTATCA
* * * * * * * * * *
57770219 TTCT-GGTACACGTAGTAGCCTACACATAGTACTACACACGTGATCAACTTTTA-CGGTTCACGA
1 TTCTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATACACGT
*
57770282 AGTAGCCTTCACACAGTACTACACACGTGATCAAAGC
66 AGTAGCCTTCACACAGTACTACACACGTGACCAAAGC
* * *
57770319 TTTTCGGTACACATAGTATCCTTCACTTAGTACCACACATGTGACCATCATTTATCGATACACGT
1 TTCTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATACACGT
* *
57770384 AGTAGCCTTAACACTGTACTACACACGTGACCAAAGC
66 AGTAGCCTTCACACAGTACTACACACGTGACCAAAGC
* *
57770421 TTCTCGGTACACATTGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATACACGT
1 TTCTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATACACGT
*
57770486 AGTAGTCTTCACACAGTACTACACACGTG
66 AGTAGCCTTCACACAGTACTACACACGTG
57770515 TTCATCGATA
Statistics
Matches: 170, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
100 3 0.02
101 40 0.24
102 127 0.75
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (102 bp):
TTCTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATACACGT
AGTAGCCTTCACACAGTACTACACACGTGACCAAAGC
Found at i:57770504 original size:153 final size:151
Alignment explanation
Indices: 57770079--57770510 Score: 333
Period size: 151 Copynumber: 2.8 Consensus size: 151
57770069 CCGGTTCACA
* * * * * * ** *
57770079 TAGTAGCATGCACATAGTACTACACAGGTGACCATCATTATCCAATACACGTAA-TAGCCTGCAC
1 TAGTAGCCTACACATAGTACTACACACGTGACCAAC-TTCTACGGTACACG-AAGTAGCCTTCAC
* * * * * * * * * * * * *
57770143 ATAGTACTACACACGTGATCGAAGCTATCCGGTACGCATAGTAGCCTGCACATATTACTACATAT
64 ACAGTACTACACACGTGA-CCAAACTTTTCGATACACATAGTATCCTTCACACAGTACCACACAT
* * *
57770208 GCGACCTATCA-TTCT-GGTACACG
128 GTGACC-ATCATTTATCGATACACG
* * *
57770231 TAGTAGCCTACACATAGTACTACACACGTGATCAACTTTTACGGTTCACGAAGTAGCCTTCACAC
1 TAGTAGCCTACACATAGTACTACACACGTGACCAACTTCTACGGTACACGAAGTAGCCTTCACAC
* * **
57770296 AGTACTACACACGTGATCAAAGCTTTTCGGTACACATAGTATCCTTCACTTAGTACCACACATGT
66 AGTACTACACACGTGACCAAA-CTTTTCGATACACATAGTATCCTTCACACAGTACCACACATGT
57770361 GACCATCATTTATCGATACACG
130 GACCATCATTTATCGATACACG
*
57770383 TAGTAGCCTTA-ACACT-GTACTACACACGTGACCAAAGCTTCT-CGGTACAC-ATTGTAGCCTT
1 TAGTAGCC-TACACA-TAGTACTACACACGTGACC-AA-CTTCTACGGTACACGA-AGTAGCCTT
** * * * *
57770444 CACTTAGTACTACACATGTGACCATTA-TTTATCGATACACGTAGTAGT-CTTCACACAGTACTA
61 CACACAGTACTACACACGTGACCA-AACTTT-TCGATACACATAGTA-TCCTTCACACAGTACCA
57770507 CACA
123 CACA
57770511 CGTGTTCATC
Statistics
Matches: 227, Mismatches: 41, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
150 8 0.04
151 75 0.33
152 69 0.30
153 69 0.30
154 6 0.03
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (151 bp):
TAGTAGCCTACACATAGTACTACACACGTGACCAACTTCTACGGTACACGAAGTAGCCTTCACAC
AGTACTACACACGTGACCAAACTTTTCGATACACATAGTATCCTTCACACAGTACCACACATGTG
ACCATCATTTATCGATACACG
Found at i:57788737 original size:2 final size:2
Alignment explanation
Indices: 57788730--57788754 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
57788720 CCTTGTTTGA
57788730 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
57788755 ATACAATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:57790678 original size:14 final size:14
Alignment explanation
Indices: 57790659--57790689 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
57790649 GTAAGGAATC
57790659 ATCTTGGTGGTCAA
1 ATCTTGGTGGTCAA
*
57790673 ATCTTGGTGGTCTA
1 ATCTTGGTGGTCAA
57790687 ATC
1 ATC
57790690 ATTTTGGACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.39
Consensus pattern (14 bp):
ATCTTGGTGGTCAA
Found at i:57790696 original size:17 final size:16
Alignment explanation
Indices: 57790655--57790696 Score: 52
Period size: 14 Copynumber: 2.7 Consensus size: 16
57790645 TTTTGTAAGG
57790655 AATCATCTTGGTGGTC
1 AATCATCTTGGTGGTC
57790671 AA--ATCTTGGTGGTC
1 AATCATCTTGGTGGTC
*
57790685 TAATCATTTTGG
1 -AATCATCTTGG
57790697 ACTGCCTCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
14 12 0.55
15 2 0.09
16 2 0.09
17 6 0.27
ACGTcount: A:0.21, C:0.14, G:0.24, T:0.40
Consensus pattern (16 bp):
AATCATCTTGGTGGTC
Found at i:57794419 original size:12 final size:12
Alignment explanation
Indices: 57794400--57794429 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
57794390 GGAAGGGAAT
57794400 TAGGGATTGGGA
1 TAGGGATTGGGA
*
57794412 TTGGGATTGGGA
1 TAGGGATTGGGA
57794424 TAGGGA
1 TAGGGA
57794430 AGGGGAAGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.50, T:0.27
Consensus pattern (12 bp):
TAGGGATTGGGA
Found at i:57795361 original size:10 final size:10
Alignment explanation
Indices: 57795330--57795400 Score: 53
Period size: 10 Copynumber: 7.5 Consensus size: 10
57795320 TTTATATTAA
57795330 AAATAATATAC
1 AAAT-ATATAC
57795341 AAATA-ATAC
1 AAATATATAC
57795350 AAATATATAC
1 AAATATATAC
57795360 AAAT-T-TA-
1 AAATATATAC
*
57795367 AAATAT-TAT
1 AAATATATAC
* *
57795376 AAATTTATAA
1 AAATATATAC
* *
57795386 AAACATATAA
1 AAATATATAC
57795396 AAATA
1 AAATA
57795401 CAAAAACATA
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
7 4 0.08
8 5 0.10
9 15 0.29
10 23 0.45
11 4 0.08
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (10 bp):
AAATATATAC
Found at i:57795381 original size:16 final size:17
Alignment explanation
Indices: 57795329--57795382 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 17
57795319 TTTTATATTA
*
57795329 AAAATAATATACAAATAAT
1 AAAAT-ATATACAAAT-TT
57795348 ACAAATATATACAAATTT
1 A-AAATATATACAAATTT
*
57795366 AAAATAT-TATAAATTT
1 AAAATATATACAAATTT
57795382 A
1 A
57795383 TAAAAACATA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
16 9 0.28
17 6 0.19
18 2 0.06
19 11 0.34
20 4 0.12
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (17 bp):
AAAATATATACAAATTT
Found at i:57795415 original size:10 final size:10
Alignment explanation
Indices: 57795381--57795421 Score: 59
Period size: 10 Copynumber: 4.3 Consensus size: 10
57795371 ATTATAAATT
57795381 TATAAAAACA
1 TATAAAAACA
57795391 TAT-AAAA-A
1 TATAAAAACA
*
57795399 TACAAAAACA
1 TATAAAAACA
57795409 TATAAAAACA
1 TATAAAAACA
57795419 TAT
1 TAT
57795422 TATAAATGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 3 0.11
9 8 0.30
10 16 0.59
ACGTcount: A:0.68, C:0.10, G:0.00, T:0.22
Consensus pattern (10 bp):
TATAAAAACA
Found at i:57795566 original size:29 final size:27
Alignment explanation
Indices: 57795527--57795585 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 27
57795517 TTAAAATTAC
*
57795527 AAAAAAATAAAA-ATTGTAAAATTATGA
1 AAAAAAATAAAATATAG-AAAATTATGA
*
57795554 AAAAAAATTTAAAATATAGAAAATTATTA
1 AAAAAAA--TAAAATATAGAAAATTATGA
57795583 AAA
1 AAA
57795586 TTGTTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 7 0.26
29 17 0.63
30 3 0.11
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (27 bp):
AAAAAAATAAAATATAGAAAATTATGA
Found at i:57795575 original size:20 final size:21
Alignment explanation
Indices: 57795535--57795576 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
57795525 ACAAAAAAAT
57795535 AAAAATTGTAAAATTATGAAA
1 AAAAATTGTAAAATTATGAAA
57795556 AAAAATT-TAAAA-TATAGAAA
1 AAAAATTGTAAAATTAT-GAAA
57795576 A
1 A
57795577 TTATTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 3 0.15
20 10 0.50
21 7 0.35
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (21 bp):
AAAAATTGTAAAATTATGAAA
Found at i:57796469 original size:14 final size:14
Alignment explanation
Indices: 57796450--57796486 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
57796440 AAAATTATCC
57796450 CTCCTTTTATTCAT
1 CTCCTTTTATTCAT
57796464 CTCC-TTTATTCAT
1 CTCCTTTTATTCAT
*
57796477 -TCCTATTATT
1 CTCCTTTTATT
57796487 TCCTTCATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
12 3 0.14
13 14 0.67
14 4 0.19
ACGTcount: A:0.16, C:0.27, G:0.00, T:0.57
Consensus pattern (14 bp):
CTCCTTTTATTCAT
Found at i:57801999 original size:2 final size:2
Alignment explanation
Indices: 57801992--57802036 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
57801982 AGGTTTTCAA
57801992 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
57802034 AT A
1 AT A
57802037 CGAATGGGAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:57807798 original size:188 final size:187
Alignment explanation
Indices: 57807359--57807914 Score: 801
Period size: 188 Copynumber: 2.9 Consensus size: 187
57807349 AAAAGTTTGA
* * * *
57807359 GGGTAGTGAATCTGATTCTGATGCTGACAGAGCAAGAGGGCGTAAAAAGGAATTGATTAAGGAAG
1 GGGTAGTGAATCTGATTCTGATGCTGACAGAGCAAGAGGTCGTAAGAAGGAAATGATTAAGAAAG
* * *
57807424 GTCGTCAAAGGCATGACTCCAGTGAGGGTGACTCTGATTCTGATGGTGGGAGGCAAAAGAAGAGA
66 GTCGTCATAGGCATGACTCCAGTGAGGATGACTCTGATTCTGATGGTGAGAGGCAAAAGAAGAGA
** *
57807489 GGTGAAGTTCAAAAACGGAAGATTGAGTCAACTAGGAGCCAGAGGAGAGAGAGGGACAT
131 GGTGAAGTTC-AAAA-GGAAGATTGAGTTGACTGGGAGCCAGAGGAGAGAGAGGGACAT
* *
57807548 GGGTAGTGAATCTGATTCTGATGCTGACAGAGCAAGAGGTCAT-AGAAAAGAAATGATTAAGAAA
1 GGGTAGTGAATCTGATTCTGATGCTGACAGAGCAAGAGGTCGTAAG-AAGGAAATGATTAAGAAA
** ** *
57807612 GGTCGTCATAGGCACAACTCCAGTGAGGACAACTTTGATTCTGATGGTGAGAGGCAAAAGAAGAG
65 GGTCGTCATAGGCATGACTCCAGTGAGGATGACTCTGATTCTGATGGTGAGAGGCAAAAGAAGAG
57807677 AGGTGAAGTTCAAAAGGAAAGATTGAGTTGACTGGGAGCCAGAGGAGAGAGAGGGACAT
130 AGGTGAAGTTCAAAAGG-AAGATTGAGTTGACTGGGAGCCAGAGGAGAGAGAGGGACAT
* * *
57807736 -GGTAAGTGAATCTGATTCTGATACTGACAGAGCGAGAGGTCGTAAGAAGGAAATGGTTAAGAAA
1 GGGT-AGTGAATCTGATTCTGATGCTGACAGAGCAAGAGGTCGTAAGAAGGAAATGATTAAGAAA
* * * *
57807800 GGTCGTCGTAGGAATGACTCCAGTGAGGATGACTCTGATTCTGATGTTGAGAGGAAAAAGAAGAG
65 GGTCGTCATAGGCATGACTCCAGTGAGGATGACTCTGATTCTGATGGTGAGAGGCAAAAGAAGAG
* *
57807865 AGGTGAAGTTCAGAAAGGGAAGATCGAGTTGAATGGGAGCCAGAGGAGAG
130 AGGTGAAGTTCA-AAA-GGAAGATTGAGTTGACTGGGAGCCAGAGGAGAG
57807915 GCAGTGATAG
Statistics
Matches: 328, Mismatches: 33, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
187 5 0.02
188 163 0.50
189 158 0.48
190 2 0.01
ACGTcount: A:0.35, C:0.11, G:0.34, T:0.19
Consensus pattern (187 bp):
GGGTAGTGAATCTGATTCTGATGCTGACAGAGCAAGAGGTCGTAAGAAGGAAATGATTAAGAAAG
GTCGTCATAGGCATGACTCCAGTGAGGATGACTCTGATTCTGATGGTGAGAGGCAAAAGAAGAGA
GGTGAAGTTCAAAAGGAAGATTGAGTTGACTGGGAGCCAGAGGAGAGAGAGGGACAT
Found at i:57808646 original size:39 final size:39
Alignment explanation
Indices: 57808585--57808781 Score: 223
Period size: 39 Copynumber: 5.0 Consensus size: 39
57808575 CCAAAGCTTA
*
57808585 TGGGGAGAATGATGATCAGAATAGGGATGAATATTCTAGG
1 TGGGG-GAAAGATGATCAGAATAGGGATGAATATTCTAGG
* * *
57808625 TGGGGGAAAGATGACCGGAATAAGGATGAATATTCTAGG
1 TGGGGGAAAGATGATCAGAATAGGGATGAATATTCTAGG
** * * * * * *
57808664 TGGGGGATGGGTGACCGGAATAAGGATGAATACTCTAGA
1 TGGGGGAAAGATGATCAGAATAGGGATGAATATTCTAGG
* *
57808703 TGGGGAAAAGATGATCAGAAGAGGGATGAATATTCTAGG
1 TGGGGGAAAGATGATCAGAATAGGGATGAATATTCTAGG
* * * *
57808742 TGGGAGAAAGATGATCTGAAAAGGGATGATTATTCTAGG
1 TGGGGGAAAGATGATCAGAATAGGGATGAATATTCTAGG
57808781 T
1 T
57808782 CAGTTAGGTC
Statistics
Matches: 133, Mismatches: 24, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
39 128 0.96
40 5 0.04
ACGTcount: A:0.35, C:0.07, G:0.36, T:0.23
Consensus pattern (39 bp):
TGGGGGAAAGATGATCAGAATAGGGATGAATATTCTAGG
Found at i:57812388 original size:26 final size:26
Alignment explanation
Indices: 57812359--57812410 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
57812349 ATATTTTATA
*
57812359 TTAAAATAATACAAATATATACAAAT
1 TTAAAATAATACAAATATATAAAAAT
* * *
57812385 TTAAAATATTATAAATTTATAAAAAT
1 TTAAAATAATACAAATATATAAAAAT
57812411 ATATAAAAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (26 bp):
TTAAAATAATACAAATATATAAAAAT
Found at i:57812416 original size:10 final size:10
Alignment explanation
Indices: 57812355--57812465 Score: 51
Period size: 10 Copynumber: 11.8 Consensus size: 10
57812345 TATGATATTT
*
57812355 TATATTAAAA
1 TATATAAAAA
*
57812365 TA-ATACAAA
1 TATATAAAAA
*
57812374 TATATACAAA
1 TATATAAAAA
57812384 T-T-T-AAAA
1 TATATAAAAA
*
57812391 TAT-TATAAA
1 TATATAAAAA
*
57812400 TTTATAAAAA
1 TATATAAAAA
*
57812410 TATATAAAAG
1 TATATAAAAA
*
57812420 TACA-AAAAA
1 TATATAAAAA
57812429 -A-ATAAAAA
1 TATATAAAAA
* *
57812437 CATATTATAAA
1 TATA-TAAAAA
*
57812448 TGAAAT-AAAA
1 T-ATATAAAAA
57812458 TATATAAA
1 TATATAAA
57812466 TTATTAAAAA
Statistics
Matches: 76, Mismatches: 15, Indels: 20
0.68 0.14 0.18
Matches are distributed among these distances:
7 5 0.07
8 9 0.12
9 21 0.28
10 33 0.43
11 6 0.08
12 2 0.03
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.31
Consensus pattern (10 bp):
TATATAAAAA
Found at i:57812656 original size:106 final size:108
Alignment explanation
Indices: 57812546--57812739 Score: 320
Period size: 106 Copynumber: 1.8 Consensus size: 108
57812536 AAATTATGAA
* ** **
57812546 AAATATTTAAAAATATAGGAAATTATTAAAATTGTTCTTAAAATTTACAAAATATTATAAA-AAA
1 AAATATTTAAAAATATAGAAAACAATTAAAATTGTTAGTAAAATTTACAAAATATTATAAATAAA
57812610 ATTAAATTTTG-AAAAGAAGAAGAAGAAGAAATCATTAGTCGT
66 ATTAAATTTTGAAAAAGAAGAAGAAGAAGAAATCATTAGTCGT
57812652 AAATATTTAAAAATATAGAAAACAATTAAAATTGTTAGTAAAATTTACAAAATATTATAAATAAA
1 AAATATTTAAAAATATAGAAAACAATTAAAATTGTTAGTAAAATTTACAAAATATTATAAATAAA
*
57812717 ATTGAATTTTGAAAAAGAAGAAG
66 ATTAAATTTTGAAAAAGAAGAAG
57812740 TCGTAACTAT
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
106 56 0.70
107 13 0.16
108 11 0.14
ACGTcount: A:0.56, C:0.03, G:0.10, T:0.31
Consensus pattern (108 bp):
AAATATTTAAAAATATAGAAAACAATTAAAATTGTTAGTAAAATTTACAAAATATTATAAATAAA
ATTAAATTTTGAAAAAGAAGAAGAAGAAGAAATCATTAGTCGT
Found at i:57816365 original size:6 final size:6
Alignment explanation
Indices: 57816356--57816534 Score: 94
Period size: 6 Copynumber: 29.8 Consensus size: 6
57816346 CAAGTGTGAG
* * * * *
57816356 TGAGAA TGAGAA TGAGAG TGA-AA GTGTGAG TGAGAA TAAGAA TGAGAG
1 TGAGAA TGAGAA TGAGAA TGAGAA -TGAGAA TGAGAA TGAGAA TGAGAA
* * * * * * *
57816404 TGAGAA TGAGAT TGAGAA TGAGAG TGTGAG TGAGAG TGAGAA TAAGAG
1 TGAGAA TGAGAA TGAGAA TGAGAA TGAGAA TGAGAA TGAGAA TGAGAA
* ** ** * *
57816452 CGAGAA TGAGTT TGAGAA TGAGAGTA TGAG-- TGAGGG TGAGAG TGAGAG
1 TGAGAA TGAGAA TGAGAA TGAGA--A TGAGAA TGAGAA TGAGAA TGAGAA
* * * * *
57816500 TGAGAA TGAGAG TGTGAG CGAGAA TGTGAA TGAGA
1 TGAGAA TGAGAA TGAGAA TGAGAA TGAGAA TGAGA
57816535 TTCAGCATCC
Statistics
Matches: 131, Mismatches: 36, Indels: 12
0.73 0.20 0.07
Matches are distributed among these distances:
4 4 0.03
5 1 0.01
6 120 0.92
7 1 0.01
8 5 0.04
ACGTcount: A:0.39, C:0.01, G:0.40, T:0.20
Consensus pattern (6 bp):
TGAGAA
Found at i:57816369 original size:30 final size:30
Alignment explanation
Indices: 57816328--57816441 Score: 140
Period size: 30 Copynumber: 3.8 Consensus size: 30
57816318 ATCGAGATGA
* *
57816328 AGAACGAGAATGAGAGTGCAAGTGTGAGTG
1 AGAATGAGAATGAGAGTGAAAGTGTGAGTG
57816358 AGAATGAGAATGAGAGTGAAAGTGTGAGTG
1 AGAATGAGAATGAGAGTGAAAGTGTGAGTG
* * *
57816388 AGAATAAGAATGAGAGTGAGAA-TGAGATTG
1 AGAATGAGAATGAGAGTGA-AAGTGTGAGTG
* * *
57816418 AGAATGAGAGTGTGAGTGAGAGTG
1 AGAATGAGAATGAGAGTGAAAGTG
57816442 AGAATAAGAG
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
29 1 0.01
30 70 0.96
31 2 0.03
ACGTcount: A:0.39, C:0.02, G:0.39, T:0.19
Consensus pattern (30 bp):
AGAATGAGAATGAGAGTGAAAGTGTGAGTG
Found at i:57816371 original size:12 final size:12
Alignment explanation
Indices: 57816333--57816513 Score: 159
Period size: 12 Copynumber: 15.1 Consensus size: 12
57816323 GATGAAGAAC
57816333 GAGAATGAGAGT
1 GAGAATGAGAGT
* *
57816345 GCA-AGTGTGAGT
1 G-AGAATGAGAGT
*
57816357 GAGAATGAGAAT
1 GAGAATGAGAGT
* *
57816369 GAGAGTGAAAGT
1 GAGAATGAGAGT
* * *
57816381 GTGAGTGAGAAT
1 GAGAATGAGAGT
*
57816393 AAGAATGAGAGT
1 GAGAATGAGAGT
*
57816405 GAGAATGAGATT
1 GAGAATGAGAGT
57816417 GAGAATGAGAGT
1 GAGAATGAGAGT
* *
57816429 GTGAGTGAGAGT
1 GAGAATGAGAGT
* *
57816441 GAGAATAAGAGC
1 GAGAATGAGAGT
**
57816453 GAGAATGAGTTT
1 GAGAATGAGAGT
57816465 GAGAATGAGAGT
1 GAGAATGAGAGT
* *
57816477 -ATGAGTGAGGGT
1 GA-GAATGAGAGT
*
57816489 GAGAGTGAGAGT
1 GAGAATGAGAGT
57816501 GAGAATGAGAGT
1 GAGAATGAGAGT
57816513 G
1 G
57816514 TGAGCGAGAA
Statistics
Matches: 131, Mismatches: 34, Indels: 8
0.76 0.20 0.05
Matches are distributed among these distances:
11 2 0.02
12 127 0.97
13 2 0.02
ACGTcount: A:0.38, C:0.01, G:0.41, T:0.20
Consensus pattern (12 bp):
GAGAATGAGAGT
Found at i:57816409 original size:48 final size:48
Alignment explanation
Indices: 57816353--57816510 Score: 217
Period size: 48 Copynumber: 3.3 Consensus size: 48
57816343 GTGCAAGTGT
* * * * *
57816353 GAGTGAGAATGAGAATGAGAGTGAAAGTGTGAGTGAGAATAAGAATGA
1 GAGTGAGAATGAGATTGAGAATGAGAGTGTGAGTGAGAGTGAGAATGA
*
57816401 GAGTGAGAATGAGATTGAGAATGAGAGTGTGAGTGAGAGTGAGAATAA
1 GAGTGAGAATGAGATTGAGAATGAGAGTGTGAGTGAGAGTGAGAATGA
* * * * *
57816449 GAGCGAGAATGAGTTTGAGAATGAGAGTATGAGTGAGGGTGAGAGTGA
1 GAGTGAGAATGAGATTGAGAATGAGAGTGTGAGTGAGAGTGAGAATGA
57816497 GAGTGAGAATGAGA
1 GAGTGAGAATGAGA
57816511 GTGTGAGCGA
Statistics
Matches: 96, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 96 1.00
ACGTcount: A:0.39, C:0.01, G:0.41, T:0.20
Consensus pattern (48 bp):
GAGTGAGAATGAGATTGAGAATGAGAGTGTGAGTGAGAGTGAGAATGA
Found at i:57816444 original size:30 final size:30
Alignment explanation
Indices: 57816328--57816534 Score: 127
Period size: 30 Copynumber: 7.3 Consensus size: 30
57816318 ATCGAGATGA
* * *
57816328 AGAACGAGAATGAGAGTGCAAGTGTGAGTG
1 AGAATGAGAATGAGAGTGTAAGTGAGAGTG
* *
57816358 AGAATGAGAATGAGAGTGAAAGTGTGAGTG
1 AGAATGAGAATGAGAGTGTAAGTGAGAGTG
*
57816388 AGAATAAGAATGAGAGTG--A--GA-A-TG
1 AGAATGAGAATGAGAGTGTAAGTGAGAGTG
* *
57816412 AGATTGAGAATGAGAGTGTGAGTGAGAGTG
1 AGAATGAGAATGAGAGTGTAAGTGAGAGTG
* * **
57816442 AGAAT---AA-GAGCGAG-AA-TGAGTTTG
1 AGAATGAGAATGAGAGTGTAAGTGAGAGTG
* *
57816466 AGAATGAGAGT-ATGAGTG-AGGGTGAGAGTG
1 AGAATGAGAATGA-GAGTGTA-AGTGAGAGTG
* * * *
57816496 AGAGTGAGAATGAGAGTGTGAGCGAGAATG
1 AGAATGAGAATGAGAGTGTAAGTGAGAGTG
*
57816526 TGAATGAGA
1 AGAATGAGA
57816535 TTCAGCATCC
Statistics
Matches: 136, Mismatches: 26, Indels: 30
0.71 0.14 0.16
Matches are distributed among these distances:
24 29 0.21
25 2 0.01
26 7 0.05
27 4 0.03
28 7 0.05
29 1 0.01
30 85 0.62
31 1 0.01
ACGTcount: A:0.39, C:0.02, G:0.40, T:0.19
Consensus pattern (30 bp):
AGAATGAGAATGAGAGTGTAAGTGAGAGTG
Done.