Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62175169
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 981721 characters in sequence are not A, C, G, or T
File 25 of 202
Found at i:7268616 original size:45 final size:44
Alignment explanation
Indices: 7268565--7268659 Score: 120
Period size: 45 Copynumber: 2.1 Consensus size: 44
7268555 GGAATAGAGG
* *
7268565 TGTAATGGATTAGAGGTGTAATAGCAAATCAAT-TGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATC-ATGTGTTTGGTTGAA
* * *
7268610 TGTAATGGAATAGAGGCGTAATAGTATTCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCATGTGTTTGGTTGAA
7268654 TGTAAT
1 TGTAAT
7268660 AGAGGTGTAA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
43 1 0.02
44 21 0.48
45 22 0.50
ACGTcount: A:0.31, C:0.04, G:0.27, T:0.38
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCATGTGTTTGGTTGAA
Found at i:7268837 original size:16 final size:16
Alignment explanation
Indices: 7268800--7268841 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
7268790 TTAATCATAT
*
7268800 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
7268816 TT-AAATATATTATAA
1 TTAAAATATATTATAA
7268831 TTAAAATATAT
1 TTAAAATATAT
7268842 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:7268848 original size:14 final size:15
Alignment explanation
Indices: 7268809--7268850 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7268799 TTTAAACATA
*
7268809 ATTATTATTAAATAT
1 ATTATAATTAAATAT
7268824 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
7268838 A-TATAATTTAATA
1 ATTATAATTAAATA
7268851 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:7268948 original size:120 final size:120
Alignment explanation
Indices: 7268803--7269145 Score: 679
Period size: 120 Copynumber: 2.9 Consensus size: 120
7268793 ATCATATTTA
7268803 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
7268868 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
7268923 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
7268988 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
7269043 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
7269108 TATTCTTATATGAATTTACTCAAATCATAATATA-GATA
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATA
7269146 ATTTAACATA
Statistics
Matches: 223, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
119 4 0.02
120 219 0.98
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:7268968 original size:14 final size:15
Alignment explanation
Indices: 7268919--7268970 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
7268909 ATAAAATATA
7268919 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
7268934 TATTAAATATATTAT
1 AATTAAATATATTAT
7268949 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
7268962 AATTTAATA
1 AATTAAATA
7268971 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:7269088 original size:14 final size:15
Alignment explanation
Indices: 7269039--7269090 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
7269029 ATAAAATATA
7269039 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
7269054 TATTAAATATATTAT
1 AATTAAATATATTAT
7269069 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
7269082 AATTTAATA
1 AATTAAATA
7269091 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:7269666 original size:26 final size:28
Alignment explanation
Indices: 7269637--7269697 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
7269627 TATGAATTTG
*
7269637 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
7269663 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
7269691 TAAAATT
1 TATAATT
7269698 CTTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:7269767 original size:91 final size:91
Alignment explanation
Indices: 7269612--7269819 Score: 308
Period size: 91 Copynumber: 2.3 Consensus size: 91
7269602 TAATTATAAC
* * * * * *
7269612 TAATAAATTATGTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
7269677 AATATATAATTTCATAAAATTCTTGA
66 AATATATAATTTCATAAAATTCTTAA
*
7269703 TAATAAATTTTCTTATATGAATTTATACAGTTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
7269768 GATATATAATTTCATAAAATTCTTAA
66 AATATATAATTTCATAAAATTCTTAA
* *
7269794 TCATAAAATGTTCTTATATGAATTTA
1 TAAT-AAATTTTCTTATATGAATTTA
7269820 CTAAAATCAA
Statistics
Matches: 105, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
91 85 0.81
92 20 0.19
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATATAATTTCATAAAATTCTTAA
Found at i:7269794 original size:47 final size:47
Alignment explanation
Indices: 7269656--7269794 Score: 128
Period size: 47 Copynumber: 3.0 Consensus size: 47
7269646 AAATAATTAT
* * *
7269656 TATTACATATAATTTAATAATAATATATAATTTCATAAAATTCTTGA
1 TATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAA
* * * * **
7269703 TAATAAAT-T--TTCTTAT-ATGAATTTATACAGTT--TAAAATAATTAA
1 TATTAAATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTAA
7269747 TATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAA
1 TATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAA
7269794 T
1 T
7269795 CATAAAATGT
Statistics
Matches: 68, Mismatches: 15, Indels: 18
0.67 0.15 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 13 0.19
47 22 0.32
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (47 bp):
TATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAA
Found at i:7271191 original size:7 final size:7
Alignment explanation
Indices: 7271179--7271228 Score: 55
Period size: 7 Copynumber: 7.0 Consensus size: 7
7271169 AAACTATAAC
7271179 TTAAAAT
1 TTAAAAT
7271186 TTAAAAT
1 TTAAAAT
7271193 TTAAAAT
1 TTAAAAT
* *
7271200 TATAACAC
1 T-TAAAAT
**
7271208 AAAAAAT
1 TTAAAAT
7271215 TTAAAAT
1 TTAAAAT
7271222 TTAAAAT
1 TTAAAAT
7271229 GAGAAGAAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
7 30 0.88
8 4 0.12
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (7 bp):
TTAAAAT
Found at i:7271295 original size:11 final size:11
Alignment explanation
Indices: 7271281--7271307 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7271271 AAAAATCAAT
7271281 ACAAAAGTTTC
1 ACAAAAGTTTC
7271292 ACAAAAGTTTC
1 ACAAAAGTTTC
7271303 ACAAA
1 ACAAA
7271308 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:7274138 original size:10 final size:10
Alignment explanation
Indices: 7274123--7274155 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
7274113 ATTTTTTTAC
7274123 AATTTCTTTG
1 AATTTCTTTG
7274133 AATTTCTTTG
1 AATTTCTTTG
7274143 AATTT-TTT-
1 AATTTCTTTG
7274151 AATTT
1 AATTT
7274156 AAGTTCTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 5 0.22
9 3 0.13
10 15 0.65
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.64
Consensus pattern (10 bp):
AATTTCTTTG
Found at i:7274706 original size:23 final size:23
Alignment explanation
Indices: 7274667--7274729 Score: 92
Period size: 23 Copynumber: 2.7 Consensus size: 23
7274657 TGTACTGACT
7274667 AACAAATCAAGAACAATTTCCAG
1 AACAAATCAAGAACAATTTCCAG
* *
7274690 TAGATAATCAA-AACAATTTCCAG
1 AACA-AATCAAGAACAATTTCCAG
7274713 AACAAATCAAGAACAAT
1 AACAAATCAAGAACAAT
7274730 ATCAAAACAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
22 6 0.18
23 22 0.65
24 6 0.18
ACGTcount: A:0.54, C:0.19, G:0.08, T:0.19
Consensus pattern (23 bp):
AACAAATCAAGAACAATTTCCAG
Found at i:7279665 original size:22 final size:22
Alignment explanation
Indices: 7279623--7279698 Score: 56
Period size: 22 Copynumber: 3.7 Consensus size: 22
7279613 AATTTAAAAA
*
7279623 TGTATATAAATATATAGATATG
1 TGTATATAAATATATAAATATG
*
7279645 TGTATATAAGT-TATAAA-A--
1 TGTATATAAATATATAAATATG
* *
7279663 --TATAAAAATATATAAGTATG
1 TGTATATAAATATATAAATATG
* *
7279683 TGTATACATATATATA
1 TGTATATAAATATATA
7279699 TATTTATAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
16 7 0.17
17 5 0.12
18 1 0.02
20 1 0.02
21 5 0.12
22 22 0.54
ACGTcount: A:0.49, C:0.01, G:0.11, T:0.39
Consensus pattern (22 bp):
TGTATATAAATATATAAATATG
Found at i:7279751 original size:21 final size:22
Alignment explanation
Indices: 7279712--7279756 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
7279702 TTATAAAAAT
*
7279712 TAAAAAAATATGTACGTATATA
1 TAAAAAAAGATGTACGTATATA
* *
7279734 TAAAAAAAGA-GTATGTATGTA
1 TAAAAAAAGATGTACGTATATA
7279755 TA
1 TA
7279757 CACATATAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.53, C:0.02, G:0.13, T:0.31
Consensus pattern (22 bp):
TAAAAAAAGATGTACGTATATA
Found at i:7279907 original size:3 final size:3
Alignment explanation
Indices: 7279845--7279887 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
7279835 AAATATAGTG
* * *
7279845 ATA ATA ACA ATA ATA TTA ATA ATA ATA CTA ATA ATA AT- ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
7279888 TTATTATTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:7281611 original size:50 final size:49
Alignment explanation
Indices: 7281527--7283148 Score: 853
Period size: 50 Copynumber: 32.7 Consensus size: 49
7281517 ATCTATTCAC
*** *
7281527 CAGGGAAGTAAGATTCATTGTTGTAGTTTCAATCTATTTAATTGCAATGT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTTAATTGCAATGT
** * * * ** *
7281577 TGGGGAAGCAAGATTCGCCATTGTAGCTTTAATCTGTTCCATTGCACT-T
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTTAATTGCAATGT
* * ** * *
7281626 CTAGGAAAGTAAGATTCACTATTGTGGCCTCAATCTTTTAATTGCAATGT
1 C-AGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTAATTGCAATGT
* * * ** * ** *
7281676 C-GAGGAAGCAAGATTCGTCGTTGTAGTTTCAATCTATTCCACTGCACCGC
1 CAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTTAATTGCAATGT
** * * * * *
7281726 CAGAAAAGTAAGATTTGCTGTTGTGGCCTT-GATCTTTTAATTGTAATGT
1 CAGGGAAGTAAGATTCGCCGTTGTAG-CTTCAATCTTTTAATTGCAATGT
* * * * * * * *
7281775 CGGGGAAGTAATATTTGCCATTGTAGCTTTAAT-TTGTTCCACTGCACCA-CT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTT-TT-AATTGCA--ATGT
* * * *
7281826 -AGGGAAGTAAGATTCACCGTTGTGGCCTCGATCTTTTAATTGCAATGT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTAATTGCAATGT
* * ** * *
7281874 CAGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCA-CT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTTAATTGCA--ATGT
* *
7281925 -AGGGAAGTAAGATTCGCCATTGTGGCTTCAATCCTTTTAATTGCAATGT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAAT-CTTTTAATTGCAATGT
* ** * * *
7281974 C-GGAGAAGCAAGATTCGCCGTTGTAGCTTCAAT-TTGTCCCACTACACTG-
1 CAGG-GAAGTAAGATTCGCCGTTGTAGCTTCAATCTT-T-TAATTGCAATGT
** *
7282023 CAAGGGAAGTAAGATTCATCGTTGTAGCTTCAATTTTTTTAATTGCAATGT
1 C-AGGGAAGTAAGATTCGCCGTTGTAGCTTCAA-TCTTTTAATTGCAATGT
* * * *** * ** *
7282074 C-GAGGAAGTAAAATTCACCGATGTAGCTTCAATCTGTCCCACTGCACCGC
1 CAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTTAATTGCAATGT
* *
7282124 CAGGGAAGTAAGATTCACCGTTGTCGCTTCAATCTTTTTAATTGCAATGT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATC-TTTTAATTGCAATGT
* ** * * ** * ** *
7282174 CGGGGAAACAAGATTTGTCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTTAATTGCAATGT
* * *
7282224 CAGGAAAGTAAGATTCACCGTTGT-GACCTCAATCTTTTAATTGCAATGT
1 CAGGGAAGTAAGATTCGCCGTTGTAG-CTTCAATCTTTTAATTGCAATGT
* * ** * * ** *
7282273 C-GAGGAAGCAAGATTCGCCGTTGTAACTTCAATCTGTTCCACTGTACCGC
1 CAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTTAATTGCAATGT
** * * * * *
7282323 CAGAAAAGTAAGATTTGCCGTTGTGGCCTCGATCTTTTAATTACAATGT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTAATTGCAATGT
* * * * ** * * *
7282372 CGGGGAAGCAAGATTCGCCATTGTAGCTTTAATCTGTTCCACTGCACTGC
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTTAATTGCAATGT
** * * * *
7282422 CAGGGAAGTAAGATTCGCTATTGTGGCCTCGATCTTTTAATTACAATGT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTAATTGCAATGT
* * * * * *
7282471 CGGGGAAGCAAGATTCACCGTTGTGGCATCACTCTTTTAATTGCAATGT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTAATTGCAATGT
* * *** ****
7282520 CGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCTTTGCACCAC
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTTAATTGCAATGT
* * * * *
7282570 CAGGAAAGTAAGATTCGCTGTTGTGGCCTCAATCTTTTAATTGCAATAT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTAATTGCAATGT
* * ** * *
7282619 -TGAGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACT-T
1 CAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTTAATTGCAATGT
* * * *
7282668 CCAGGGAAATAAGATTCGCCCTTGTGGCCTT-GATCTTTTAATTGCAATGT
1 -CAGGGAAGTAAGATTCGCCGTTGTAG-CTTCAATCTTTTAATTGCAATGT
* * * * * **
7282718 CGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCT-ACTGTACCG-
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TT-TAATTGCAATGT
* * * * *
7282767 CTAGGGAAATAAGATTCGCCGTTGTGGCCTCGATCTTTTAATTGTAATGT
1 C-AGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTAATTGCAATGT
* ** * ** *
7282817 -AGGGGAAGTAAGATTCGTCGTTGTAGCTTCAATCTATTCCACTGCACCGC
1 CA-GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTTAATTGCAATGT
* * *
7282867 CAGGGAAATAATATTCGCCGTTGT-GACCTCAATCTTTTAATTGCAATGT
1 CAGGGAAGTAAGATTCGCCGTTGTAG-CTTCAATCTTTTAATTGCAATGT
*** * ** * * *
7282916 C-GAGGAAGCGTGATTCACCAG-TGTAGCTTCAATCTGTTCCACTGCATTGC
1 CAG-GGAAGTAAGATTCGCC-GTTGTAGCTTCAATCT-TTTAATTGCAATGT
* * * * *
7282966 CAGGGAAGTAAGATTCACCGTTAT-GACTTTAATCTTTTAATTACAATGC
1 CAGGGAAGTAAGATTCGCCGTTGTAG-CTTCAATCTTTTAATTGCAATGT
* * * **** ****
7283015 CGGGGAAGTGAGATTTGCCGTTGTAGCTTCAATCTGTTCCGCTGCACCAC
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT-TTTAATTGCAATGT
* * * *
7283065 CAGGGAAGTAAGATTTGCCGTTGTGGCCTCGATCTTTTAATTGCAATGT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTAATTGCAATGT
* * *
7283114 CGGGGAAGCAAGATTTGCCGTTGTAGCTTCAATCT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT
7283149 GTTCCACTGT
Statistics
Matches: 1141, Mismatches: 366, Indels: 131
0.70 0.22 0.08
Matches are distributed among these distances:
47 1 0.00
48 18 0.02
49 463 0.41
50 631 0.55
51 24 0.02
52 4 0.00
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (49 bp):
CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTAATTGCAATGT
Found at i:7281710 original size:99 final size:99
Alignment explanation
Indices: 7281526--7282494 Score: 1137
Period size: 99 Copynumber: 9.7 Consensus size: 99
7281516 AATCTATTCA
** * ** *
7281526 CCAGGGAAGTAAGATTCATTGTTGTAGTTTCAATCTATTTAATTGCAATGTTGGGGAAGCAAGAT
1 CCAGGGAAGTAAGATTCACCGTTGTGGCCTCAATCT-TTTAATTGCAATGTCGGGGAAGCAAGAT
* * * **
7281591 TCGCCATTGTAGCTTTAATCTGTTCCATTGCACTT
65 TCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCG
* * ** *
7281626 CTAGGAAAGTAAGATTCACTATTGTGGCCTCAATCTTTTAATTGCAATGTCGAGGAAGCAAGATT
1 CCAGGGAAGTAAGATTCACCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATT
* * *
7281691 CGTCGTTGTAGTTTCAATCTATTCCACTGCACCG
66 CGCCGTTGTAGCTTCAATCTGTTCCACTGCACCG
** ** * ** * * *
7281725 CCAGAAAAGTAAGATTTGCTGTTGTGGCCTTGATCTTTTAATTGTAATGTCGGGGAAGTAATATT
1 CCAGGGAAGTAAGATTCACCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATT
* * * * *
7281790 TGCCATTGTAGCTTTAATTTGTTCCACTGCACCA
66 CGCCGTTGTAGCTTCAATCTGTTCCACTGCACCG
* * *
7281824 CTAGGGAAGTAAGATTCACCGTTGTGGCCTCGATCTTTTAATTGCAATGTCAGGGAAGCAAGATT
1 CCAGGGAAGTAAGATTCACCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATT
* * *
7281889 CACCGTTGTAGCTTCAATCTATTCCACTGCACCA
66 CGCCGTTGTAGCTTCAATCTGTTCCACTGCACCG
* * * * *
7281923 CTAGGGAAGTAAGATTCGCCATTGTGGCTTCAATCCTTTTAATTGCAATGTCGGAGAAGCAAGAT
1 CCAGGGAAGTAAGATTCACCGTTGTGGCCTCAAT-CTTTTAATTGCAATGTCGGGGAAGCAAGAT
* * * *
7281988 TCGCCGTTGTAGCTTCAATTTGTCCCACTACACTG
65 TCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCG
* * * * * * * *
7282023 CAAGGGAAGTAAGATTCATCGTTGTAGCTTCAATTTTTTTAATTGCAATGTCGAGGAAGTAAAAT
1 CCAGGGAAGTAAGATTCACCGTTGTGGCCTCAA-TCTTTTAATTGCAATGTCGGGGAAGCAAGAT
* * *
7282088 TCACCGATGTAGCTTCAATCTGTCCCACTGCACCG
65 TCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCG
* * *
7282123 CCAGGGAAGTAAGATTCACCGTTGTCGCTTCAATCTTTTTAATTGCAATGTCGGGGAAACAAGAT
1 CCAGGGAAGTAAGATTCACCGTTGTGGCCTCAATC-TTTTAATTGCAATGTCGGGGAAGCAAGAT
* *
7282188 TTGTCGTTGTAGCTTCAATCTGTTCCACTGCACCG
65 TCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCG
* * *
7282223 CCAGGAAAGTAAGATTCACCGTTGTGACCTCAATCTTTTAATTGCAATGTCGAGGAAGCAAGATT
1 CCAGGGAAGTAAGATTCACCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATT
* *
7282288 CGCCGTTGTAACTTCAATCTGTTCCACTGTACCG
66 CGCCGTTGTAGCTTCAATCTGTTCCACTGCACCG
** ** * *
7282322 CCAGAAAAGTAAGATTTGCCGTTGTGGCCTCGATCTTTTAATTACAATGTCGGGGAAGCAAGATT
1 CCAGGGAAGTAAGATTCACCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATT
* * *
7282387 CGCCATTGTAGCTTTAATCTGTTCCACTGCACTG
66 CGCCGTTGTAGCTTCAATCTGTTCCACTGCACCG
* ** * *
7282421 CCAGGGAAGTAAGATTCGCTATTGTGGCCTCGATCTTTTAATTACAATGTCGGGGAAGCAAGATT
1 CCAGGGAAGTAAGATTCACCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATT
*
7282486 CACCGTTGT
66 CGCCGTTGT
7282495 GGCATCACTC
Statistics
Matches: 743, Mismatches: 123, Indels: 7
0.85 0.14 0.01
Matches are distributed among these distances:
99 458 0.62
100 284 0.38
101 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.32
Consensus pattern (99 bp):
CCAGGGAAGTAAGATTCACCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATT
CGCCGTTGTAGCTTCAATCTGTTCCACTGCACCG
Found at i:7282534 original size:346 final size:347
Alignment explanation
Indices: 7282126--7282851 Score: 1033
Period size: 346 Copynumber: 2.1 Consensus size: 347
7282116 TGCACCGCCA
* *
7282126 GGGAAGTAAGATTCACCGTTGTCGCTTCAATCTTTTTAATTGCAATGTCGGGGAAACAAGATTTG
1 GGGAAGTAAGATTCACCGTTGTCGCATCAATCTTTTTAATTGCAATGTCGGGGAAACAAGATTCG
* *
7282191 TCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGAAAGTAAGATTCACCGTTGTGACCTCAA
66 CCGTTGTAGCTTCAATCTGTTCCACTGCACCACCAGGAAAGTAAGATTCACCGTTGTGACCTCAA
* * *
7282256 TCTTTTAATTGCAATGTCGAGGAAGCAAGATTCGCCGTTGTAACTTCAATCTGTTCCACTGTACC
131 TCTTTTAATTGCAATATCGAGGAAGCAAGATTCGCCGTTGTAACTTCAATCTATTCCACTGCACC
* *
7282321 GCCA-GAAAAGTAAGATTTGCCGTTGTGGCCTCGATCTTTTAATTACAATGTCGGGGAAGCAAGA
196 GCCAGGAAAA-TAAGATTCGCCCTTGTGGCCTCGATCTTTTAATTACAATGTCGGGGAAGCAAGA
* * * * *
7282385 TTCGCCATTGTAGCTTTAATCTGTTCCACTGCACTGCCAGGGAAGTAAGATTCGCTATTGTGGCC
260 TTCACCATTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAATAAGATTCGCCATTGTGGCC
*
7282450 TCGATCTTTTAATTACAATGTCG
325 TCGATCTTTTAATTACAATGTAG
* * * *
7282473 GGGAAGCAAGATTCACCGTTGTGGCATCACTC-TTTTAATTGCAATGTCGGGGAAGCAAGATTCG
1 GGGAAGTAAGATTCACCGTTGTCGCATCAATCTTTTTAATTGCAATGTCGGGGAAACAAGATTCG
** * * *
7282537 CCGTTGTAGCTTCAATCTGTTCCTTTGCACCACCAGGAAAGTAAGATTCGCTGTTGTGGCCTCAA
66 CCGTTGTAGCTTCAATCTGTTCCACTGCACCACCAGGAAAGTAAGATTCACCGTTGTGACCTCAA
* ** * *
7282602 TCTTTTAATTGCAATATTGAGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACT
131 TCTTTTAATTGCAATATCGAGGAAGCAAGATTCGCCGTTGTAACTTCAATCTATTCCACTGCACC
* * * *
7282667 TCCAGGGAAATAAGATTCGCCCTTGTGGCCTTGATCTTTTAATTGCAATGTCGGGGAAGCAAGAT
196 GCCAGGAAAATAAGATTCGCCCTTGTGGCCTCGATCTTTTAATTACAATGTCGGGGAAGCAAGAT
* * * * *
7282732 TCACCGTTGTAGCTTCAATCTGTTCTACTGTACCGCTAGGGAAATAAGATTCGCCGTTGTGGCCT
261 TCACCATTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAATAAGATTCGCCATTGTGGCCT
**
7282797 CGATCTTTTAATTGTAATGTAG
326 CGATCTTTTAATTACAATGTAG
** * *
7282819 GGGAAGTAAGATTCGTCGTTGTAGCTTCAATCT
1 GGGAAGTAAGATTCACCGTTGTCGCATCAATCT
7282852 ATTCCACTGC
Statistics
Matches: 331, Mismatches: 46, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
346 299 0.90
347 32 0.10
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (347 bp):
GGGAAGTAAGATTCACCGTTGTCGCATCAATCTTTTTAATTGCAATGTCGGGGAAACAAGATTCG
CCGTTGTAGCTTCAATCTGTTCCACTGCACCACCAGGAAAGTAAGATTCACCGTTGTGACCTCAA
TCTTTTAATTGCAATATCGAGGAAGCAAGATTCGCCGTTGTAACTTCAATCTATTCCACTGCACC
GCCAGGAAAATAAGATTCGCCCTTGTGGCCTCGATCTTTTAATTACAATGTCGGGGAAGCAAGAT
TCACCATTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAATAAGATTCGCCATTGTGGCCT
CGATCTTTTAATTACAATGTAG
Found at i:7282535 original size:247 final size:247
Alignment explanation
Indices: 7281757--7282741 Score: 776
Period size: 247 Copynumber: 4.0 Consensus size: 247
7281747 TGTGGCCTTG
* * * * * * * * *
7281757 ATCTTTTAATTGTAATGTCGGGGAAGTAATATTTGCCATTGTAGCTTTAATTTGTTCCACTGCAC
1 ATCTTTTAATTGCAATGTCGAGGAAGCAAGATTCGCCGTTGTAACTTCAATCTGTTCCACTGCAC
* ** * * * *
7281822 CACTAGGGAAGTAAGATTCACCGTTGTGGCCTCGATCTTTTAATTGCAATGTC-AGGGAAGCAAG
66 CACCAGAAAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTACAATATCGA-GGAAGCAAG
* * ** * *
7281886 ATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCACTAGGGAAGTAAGATTCGCCATTGTGGC
130 ATTCGCCATTGTAGCTTCAATCTATTCCACTGCACTGCCAGGGAAATAAGATTCGCCATTGTGGC
* * * * * *
7281951 TTCAATCCTTTTAATTGCAATGTCGGAGAAGCAAGATTCGCCGTTGT-AGCTTCA
195 CTCGAT-CTTTTAATTACAATGTCGGGGAAGCAAGATTCACCGTTGTGA-CATCA
** * * * * * ** * * * ** *
7282005 AT-TTGTCCCACTACACTG-CAAGGGAAGTAAGATTCATCGTTGTAGCTTCAATTTTTTTAATTG
1 ATCTT-T-TAATTGCAATGTCGA-GGAAGCAAGATTCGCCGTTGTAACTTCAATCTGTTCCACTG
**** * * * * * * *** * * *** *
7282068 CAATGTC-GAGGAAGTAAAATTCACCGATGTAGCTTCAATCTGTCCCACTGC-ACCGCCAGGGAA
63 CACCACCAGA-AAAGTAAGATTCGCCGTTGTGGCCTCAATCT-TTTAATTACAATATCGA-GGAA
* * * * * ** * * * * * * * *
7282131 GTAAGATTCACCGTTGTCGCTTCAATCTTTTTAATTGCAATGTCGGGGAAACAAGATTTGTCGTT
125 GCAAGATTCGCCATTGTAGCTTCAATCTATTCCACTGCACTGCCAGGGAAATAAGATTCGCCATT
* * * ** * * ** * * * * *
7282196 GTAGCTTCAATCTGTTCCACTGCACCGCCAGGAAAGTAAGATTCACCGTTGTGACCTCA
190 GTGGCCTCGATCT-TTTAATTACAATGTCGGGGAAGCAAGATTCACCGTTGTGACATCA
*
7282255 ATCTTTTAATTGCAATGTCGAGGAAGCAAGATTCGCCGTTGTAACTTCAATCTGTTCCACTGTAC
1 ATCTTTTAATTGCAATGTCGAGGAAGCAAGATTCGCCGTTGTAACTTCAATCTGTTCCACTGCAC
* * * * *
7282320 CGCCAGAAAAGTAAGATTTGCCGTTGTGGCCTCGATCTTTTAATTACAATGTCGGGGAAGCAAGA
66 CACCAGAAAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTACAATATCGAGGAAGCAAGA
* * * *
7282385 TTCGCCATTGTAGCTTTAATCTGTTCCACTGCACTGCCAGGGAAGTAAGATTCGCTATTGTGGCC
131 TTCGCCATTGTAGCTTCAATCTATTCCACTGCACTGCCAGGGAAATAAGATTCGCCATTGTGGCC
*
7282450 TCGATCTTTTAATTACAATGTCGGGGAAGCAAGATTCACCGTTGTGGCATCA
196 TCGATCTTTTAATTACAATGTCGGGGAAGCAAGATTCACCGTTGTGACATCA
* * * **
7282502 CTCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCTTTGCAC
1 ATCTTTTAATTGCAATGTCGAGGAAGCAAGATTCGCCGTTGTAACTTCAATCTGTTCCACTGCAC
* * * * **
7282567 CACCAGGAAAGTAAGATTCGCTGTTGTGGCCTCAATCTTTTAATTGCAATATTGAGGAAGTGAGA
66 CACCAGAAAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTACAATATCGAGGAAGCAAGA
* * *
7282632 TTCGCCGTTGTAGCTTCAATCTATTCCACTGCACTTCCAGGGAAATAAGATTCGCCCTTGTGGCC
131 TTCGCCATTGTAGCTTCAATCTATTCCACTGCACTGCCAGGGAAATAAGATTCGCCATTGTGGCC
* *
7282697 TTGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGT
196 TCGATCTTTTAATTACAATGTCGGGGAAGCAAGATTCACCGTTGT
7282742 AGCTTCAATC
Statistics
Matches: 563, Mismatches: 162, Indels: 25
0.75 0.22 0.03
Matches are distributed among these distances:
247 249 0.44
248 70 0.12
249 134 0.24
250 107 0.19
251 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (247 bp):
ATCTTTTAATTGCAATGTCGAGGAAGCAAGATTCGCCGTTGTAACTTCAATCTGTTCCACTGCAC
CACCAGAAAAGTAAGATTCGCCGTTGTGGCCTCAATCTTTTAATTACAATATCGAGGAAGCAAGA
TTCGCCATTGTAGCTTCAATCTATTCCACTGCACTGCCAGGGAAATAAGATTCGCCATTGTGGCC
TCGATCTTTTAATTACAATGTCGGGGAAGCAAGATTCACCGTTGTGACATCA
Found at i:7282943 original size:297 final size:297
Alignment explanation
Indices: 7282480--7283188 Score: 967
Period size: 297 Copynumber: 2.4 Consensus size: 297
7282470 TCGGGGAAGC
* *
7282480 AAGATTCACCGTTGTGGCATC-ACTCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGT
1 AAGATTCGCCGTTGTGGCCTCGA-TCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGT
** * * *
7282544 AGCTTCAATCTGTTCCTTTGCACCACCAGGAAAGTAAGATTCGCTGTTGTGGCCTCAATCTTTTA
65 AGCTTCAATCTGTTCCACTGCACCGCCAGGAAAGTAAGATTCGCCGTTGTGACCTCAATCTTTTA
* * *
7282609 ATTGCAATATTGAGGAAGTGAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACTT-CCAGG
130 ATTGCAATATCGAGGAAGCGAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCA-TTGCCAGG
* * * * * *
7282673 GAAATAAGATTCGCCCTTGTGGCCTTGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCG
194 GAAATAAGATTCACCCTTATGACCTTAATCTTTTAATTACAATGCCGGGGAAGCAAGATTCACCG
* * * *
7282738 TTGTAGCTTCAATCTGTTCTACTGTACCGCTAGGGAAAT
259 TTGTAGCTTCAATCTGTTCCACTGCACCACCAGGGAAAT
* * * *
7282777 AAGATTCGCCGTTGTGGCCTCGATCTTTTAATTGTAATGTAGGGGAAGTAAGATTCGTCGTTGTA
1 AAGATTCGCCGTTGTGGCCTCGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTA
* *
7282842 GCTTCAATCTATTCCACTGCACCGCCAGGGAAA-TAATATTCGCCGTTGTGACCTCAATCTTTTA
66 GCTTCAATCTGTTCCACTGCACCGCCA-GGAAAGTAAGATTCGCCGTTGTGACCTCAATCTTTTA
* * *
7282906 ATTGCAATGTCGAGGAAGCGTGATTCACCAG-TGTAGCTTCAATCTGTTCCACTGCATTGCCAGG
130 ATTGCAATATCGAGGAAGCGAGATTCACC-GTTGTAGCTTCAATCTATTCCACTGCATTGCCAGG
* * * ** **
7282970 GAAGTAAGATTCACCGTTATGACTTTAATCTTTTAATTACAATGCCGGGGAAGTGAGATTTGCCG
194 GAAATAAGATTCACCCTTATGACCTTAATCTTTTAATTACAATGCCGGGGAAGCAAGATTCACCG
* *
7283035 TTGTAGCTTCAATCTGTTCCGCTGCACCACCAGGGAAGT
259 TTGTAGCTTCAATCTGTTCCACTGCACCACCAGGGAAAT
* *
7283074 AAGATTTGCCGTTGTGGCCTCGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTTGCCGTTGTA
1 AAGATTCGCCGTTGTGGCCTCGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTA
* * *
7283139 GCTTCAATCTGTTCCACTGTACCGCCAGAAAAGTAAGATTCACCGTTGTG
66 GCTTCAATCTGTTCCACTGCACCGCCAGGAAAGTAAGATTCGCCGTTGTG
7283189 GCTTCGATCT
Statistics
Matches: 358, Mismatches: 49, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
296 6 0.02
297 345 0.96
298 7 0.02
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (297 bp):
AAGATTCGCCGTTGTGGCCTCGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTA
GCTTCAATCTGTTCCACTGCACCGCCAGGAAAGTAAGATTCGCCGTTGTGACCTCAATCTTTTAA
TTGCAATATCGAGGAAGCGAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCATTGCCAGGGA
AATAAGATTCACCCTTATGACCTTAATCTTTTAATTACAATGCCGGGGAAGCAAGATTCACCGTT
GTAGCTTCAATCTGTTCCACTGCACCACCAGGGAAAT
Found at i:7283196 original size:99 final size:99
Alignment explanation
Indices: 7282480--7283198 Score: 854
Period size: 99 Copynumber: 7.3 Consensus size: 99
7282470 TCGGGGAAGC
* *
7282480 AAGATTCACCGTTGTGGCATC-ACTCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGT
1 AAGATTCGCCGTTGTGGCCTCGA-TCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGT
** *
7282544 AGCTTCAATCTGTTCCTTTGCACCACCAGGAAAGT
65 AGCTTCAATCTGTTCCACTGCACCGCCAGGAAAGT
* * * * * **
7282579 AAGATTCGCTGTTGTGGCCTCAATCTTTTAATTGCAATATTGAGGAAGTGAGATTCGCCGTTGTA
1 AAGATTCGCCGTTGTGGCCTCGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTA
* **
7282644 GCTTCAATCTATTCCACTGCACTTCCAGGGAAA-T
66 GCTTCAATCTGTTCCACTGCACCGCCA-GGAAAGT
* * *
7282678 AAGATTCGCCCTTGTGGCCTTGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTA
1 AAGATTCGCCGTTGTGGCCTCGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTA
* * *
7282743 GCTTCAATCTGTTCTACTGTACCGCTAGGGAAA-T
66 GCTTCAATCTGTTCCACTGCACCGCCA-GGAAAGT
* * * *
7282777 AAGATTCGCCGTTGTGGCCTCGATCTTTTAATTGTAATGTAGGGGAAGTAAGATTCGTCGTTGTA
1 AAGATTCGCCGTTGTGGCCTCGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTA
*
7282842 GCTTCAATCTATTCCACTGCACCGCCAGGGAAA-T
66 GCTTCAATCTGTTCCACTGCACCGCCA-GGAAAGT
* * * * ** *
7282876 AATATTCGCCGTTGTGACCTCAATCTTTTAATTGCAATGTCGAGGAAGCGTGATTCACCAG-TGT
1 AAGATTCGCCGTTGTGGCCTCGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCC-GTTGT
** *
7282940 AGCTTCAATCTGTTCCACTGCATTGCCAGGGAAGT
65 AGCTTCAATCTGTTCCACTGCACCGCCAGGAAAGT
* * * * ** * * ** *
7282975 AAGATTCACCGTTATGACTTTAATCTTTTAATTACAATGCCGGGGAAGTGAGATTTGCCGTTGTA
1 AAGATTCGCCGTTGTGGCCTCGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTA
* * *
7283040 GCTTCAATCTGTTCCGCTGCACCACCAGGGAAGT
66 GCTTCAATCTGTTCCACTGCACCGCCAGGAAAGT
* *
7283074 AAGATTTGCCGTTGTGGCCTCGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTTGCCGTTGTA
1 AAGATTCGCCGTTGTGGCCTCGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTA
* *
7283139 GCTTCAATCTGTTCCACTGTACCGCCAGAAAAGT
66 GCTTCAATCTGTTCCACTGCACCGCCAGGAAAGT
* *
7283173 AAGATTCACCGTTGTGGCTTCGATCT
1 AAGATTCGCCGTTGTGGCCTCGATCT
7283199 GCTTCGCTGT
Statistics
Matches: 525, Mismatches: 90, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
98 5 0.01
99 513 0.98
100 7 0.01
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (99 bp):
AAGATTCGCCGTTGTGGCCTCGATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTA
GCTTCAATCTGTTCCACTGCACCGCCAGGAAAGT
Found at i:7284201 original size:108 final size:107
Alignment explanation
Indices: 7284002--7284219 Score: 283
Period size: 108 Copynumber: 2.0 Consensus size: 107
7283992 TTTCAACATT
* ** *
7284002 TGAAAAAGATTATCACGATGGACAAACAAAATGTTATTGAGAACAAATCTTGAAATGAATAAGTT
1 TGAAAAAGATTATCACAATGGACAAACAAAATGTTATTGAGAACAAAGATTGAAATGAATAAATT
** * * *
7284067 AATCAAGATAGCAAATTTTGTTAAGATACGAACTGAATAAGA
66 AATCAAGATAGCAAATTTTGCCAAGATACAAAATAAATAAGA
*** * * *
7284109 TGAAAAAGATTATCACAATGGACAAGATGGAATTTTTTTGAGAGCAAAGATTGAAATGAATAAAT
1 TGAAAAAGATTATCACAATGGACAA-ACAAAATGTTATTGAGAACAAAGATTGAAATGAATAAAT
*
7284174 TAATCAAGATAGCAAATTTTGCCAAGATTCAAAATAAATAAGA
65 TAATCAAGATAGCAAATTTTGCCAAGATACAAAATAAATAAGA
7284217 TGA
1 TGA
7284220 CGACAGGTGC
Statistics
Matches: 94, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
107 24 0.26
108 70 0.74
ACGTcount: A:0.48, C:0.09, G:0.17, T:0.27
Consensus pattern (107 bp):
TGAAAAAGATTATCACAATGGACAAACAAAATGTTATTGAGAACAAAGATTGAAATGAATAAATT
AATCAAGATAGCAAATTTTGCCAAGATACAAAATAAATAAGA
Found at i:7295683 original size:20 final size:19
Alignment explanation
Indices: 7295637--7295683 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
7295627 CATAAAAATT
7295637 TAAAA-ATGTATATAGATA
1 TAAAATATGTATATAGATA
* *
7295655 TATAGATATGTATATAAGTTA
1 TA-AAATATGTATAT-AGATA
7295676 TAAAATAT
1 TAAAATAT
7295684 AAAAATTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 2 0.09
19 2 0.09
20 13 0.57
21 6 0.26
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (19 bp):
TAAAATATGTATATAGATA
Found at i:7295841 original size:3 final size:3
Alignment explanation
Indices: 7295821--7295865 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
7295811 AAATGAAAAT
* * * *
7295821 ATA ATG ATA ATA AAA ATA ATA TTA ATA ATA ATA CTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7295866 CAATTTATTA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7296622 original size:16 final size:17
Alignment explanation
Indices: 7296601--7296634 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7296591 ACATAATTAT
*
7296601 TAGTAA-AAGGTTAATA
1 TAGTAATAAGGTAAATA
7296617 TAGTAATAAGGTAAATA
1 TAGTAATAAGGTAAATA
7296634 T
1 T
7296635 TAACTTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (17 bp):
TAGTAATAAGGTAAATA
Found at i:7301349 original size:13 final size:14
Alignment explanation
Indices: 7301331--7301359 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7301321 TCACATGATT
7301331 ATATATTTTT-TAA
1 ATATATTTTTATAA
7301344 ATATATTTTTATAA
1 ATATATTTTTATAA
7301358 AT
1 AT
7301360 TTAAAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATATATTTTTATAA
Found at i:7301702 original size:27 final size:25
Alignment explanation
Indices: 7301647--7301703 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
7301637 TCTTTACTAA
* *
7301647 TTTTTTGTAAAATTTGACATCTATT
1 TTTTTTGTAAAATTTGACATCAATC
* *
7301672 TTTTTTAGTTAAATTTGACCCTCAATC
1 TTTTTT-GTAAAATTTGA-CATCAATC
7301699 TTTTT
1 TTTTT
7301704 AAAAAAGAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 6 0.23
26 10 0.38
27 10 0.38
ACGTcount: A:0.25, C:0.12, G:0.07, T:0.56
Consensus pattern (25 bp):
TTTTTTGTAAAATTTGACATCAATC
Found at i:7305267 original size:44 final size:45
Alignment explanation
Indices: 7305199--7305719 Score: 293
Period size: 45 Copynumber: 11.6 Consensus size: 45
7305189 GGTTTTAGTT
* *
7305199 TGCTCCACTGCAACTTCAGTGAGATAAGACTTG-TATCTTCAACC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAATC
** * ** *
7305243 TGCTCCACTGCAACTTCAGGGAGATAAGGTTTGATATGATAAGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCA-ATC
* * * * * *
7305289 TAATTCGACCTACTGCAACTTTAGAGG-TATATGA-TT-C-ATCGTTTTAAT-
1 ---TGC-TCC-ACTGCAACTTCAG-GGAGATAAGACTTGCTATC--TTCAATC
* * * *
7305337 TCGCTCCACTGCAACTTTAGGGAAATAGGA-TTAG-TAGCTTCAATC
1 T-GCTCCACTGCAACTTCAGGGAGATAAGACTT-GCTATCTTCAATC
* * * * *
7305382 TGTTTCACTGCAACTTTAGGGAGATAAGACTCGCTATCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAATC
* * * * * *
7305427 TCCCCCACTGCAAGTTCA-GGAGGATAAGACTTGCTTTCTTCAGTA
1 TGCTCCACTGCAACTTCAGGGA-GATAAGACTTGCTATCTTCAATC
* * * *
7305472 TGCTCCACTACAACTTCGGGGAGATAAGACTTG-TAACTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAATC
* ** ** *
7305516 CGCTCCACTGCAACTTCAGGGAGAT-AGTA-TTATTGGCTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAG-ACTTGCTATCTTCAATC
* * * * *
7305560 TGCTCCACTACAACTTCAAGGATATAAGA-TTCGCCATCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTT-GCTATCTTCAATC
* * * * *
7305605 TGCCCCACTGCAACTTCAGGGGGATAAGACTTGTTTTCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAATC
* * * *
7305650 TACTCCACTACAACTTCAGGGAGATAAGACTTG--AT-AT-GATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAATC
* **
7305691 TGCTCTACTGCAACTTCAAAGAGATAAGA
1 TGCTCCACTGCAACTTCAGGGAGATAAGA
7305720 TTGATAATTT
Statistics
Matches: 365, Mismatches: 87, Indels: 53
0.72 0.17 0.10
Matches are distributed among these distances:
41 26 0.07
42 1 0.00
43 7 0.02
44 145 0.40
45 146 0.40
46 10 0.03
48 2 0.01
49 4 0.01
50 6 0.02
51 16 0.04
52 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (45 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAATC
Found at i:7305637 original size:178 final size:178
Alignment explanation
Indices: 7305331--7305682 Score: 506
Period size: 178 Copynumber: 2.0 Consensus size: 178
7305321 GATTCATCGT
* * * * *
7305331 TTTAATTCGCTCCACTGCAACTTTAGGGAAATAGGATTAGTAGCTTCAATCTGTTTCACTGCAAC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAAATAGGATTAGTAGCTTCAATCTGCTCCACTACAAC
* * * *
7305396 TTTAGGGAGATAAGACTCGCTATCTTCAGTCTCCCCCACTGCAAGTTCAGGAGGATAAGACTTGC
66 TTCAAGGAGATAAGACTCGCCATCTTCAGTCTCCCCCACTGCAACTTCAGGAGGATAAGACTTGC
* *
7305461 TTTCTTCAGTATGCTCCACTACAACTTCGGGGAGATAAGACTTGTAAC
131 TTTCTTCAGTATACTCCACTACAACTTCAGGGAGATAAGACTTGTAAC
* * * * *
7305509 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGTATTATTGGCTTTAATCTGCTCCACTACAAC
1 TTTAATCCGCTCCACTGCAACTTCAGGGAAATAGGATTAGTAGCTTCAATCTGCTCCACTACAAC
* * * * *
7305574 TTCAAGGATATAAGATTCGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGT
66 TTCAAGGAGATAAGACTCGCCATCTTCAGTCTCCCCCACTGCAACTTCAGGAGGATAAGACTTGC
*
7305639 TTTCTTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTG
131 TTTCTTCAGTATACTCCACTACAACTTCAGGGAGATAAGACTTG
7305683 ATATGATCTG
Statistics
Matches: 152, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
178 152 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (178 bp):
TTTAATCCGCTCCACTGCAACTTCAGGGAAATAGGATTAGTAGCTTCAATCTGCTCCACTACAAC
TTCAAGGAGATAAGACTCGCCATCTTCAGTCTCCCCCACTGCAACTTCAGGAGGATAAGACTTGC
TTTCTTCAGTATACTCCACTACAACTTCAGGGAGATAAGACTTGTAAC
Found at i:7305877 original size:50 final size:50
Alignment explanation
Indices: 7305808--7306549 Score: 461
Period size: 50 Copynumber: 14.8 Consensus size: 50
7305798 AATGTCGGGA
* * * * *
7305808 AAGTAAGATTTGTTATTGTAGCTTCAATCAGTTCCACTACACTGCCAGGG
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGG
* * ** * *
7305858 AAGTAAAATTCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGTC-GAGG
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAG-GG
* * * ** *
7305908 AAGAAAGATTCGCTGTTGTAACTTCAATATGTTCCACTGCACCACCAAGG
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGG
* * * * * ** * * *
7305958 AAGTAAGATTCACCGTTGTGGCTTCAATATTTTTAACTGCAATGTCGGGG
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGG
* * *
7306008 AAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGTACTGCCAAGG
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGG
* * * ** * * *
7306058 AAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTGACTGCAATGTCGGGG
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGG
* * * * *
7306108 AAGCAAGATTCGCTGTTGCAGCTTCAATCTGTTCCACTGTACCGCCAGAG
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGG
* * * ** * * **
7306158 AAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAAT-ATAGGGG
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCA-GGG
* * * **
7306208 AAGCAAGATTCG-TCATTGTAGCTTCAATCTGTTCCAGTGCACCACCAGGG
1 AAGTAAGATTCGCT-GTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGG
** * * ** * * *
7306258 AAGTAAGATT-TATCGTTGTGGCTTCAATCTTTTTAATTGCAATGTC-GGAG
1 AAGTAAGATTCGCT-GTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGG-G
* * * * ** *
7306308 AAGCAAGATTCACCGTTGTAGCTTCAATCTGTCCCACTATACTGCCAGGA
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGG
* * * * * ** * * * *
7306358 AAGTAAGATTCACCGTTGTGGCTTCAATTTTTTTAATTGCAATGTCGGGG
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGG
* * * * * * *
7306408 AAGCAAGATTCACCGTTGTAGCTTCAATATGTCCCACTGCACTGCCAAGA
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGG
* * ** * * * *
7306458 AAGTAAGATTCG-TCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGG
1 AAGTAAGATTCGCT-GTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGG
** * *
7306508 AAACAAGATTTGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
1 AAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCAC
7306550 CGTCAGTGAT
Statistics
Matches: 502, Mismatches: 179, Indels: 22
0.71 0.25 0.03
Matches are distributed among these distances:
49 4 0.01
50 495 0.99
51 3 0.01
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (50 bp):
AAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGG
Found at i:7305903 original size:100 final size:100
Alignment explanation
Indices: 7305790--7306709 Score: 1076
Period size: 100 Copynumber: 9.1 Consensus size: 100
7305780 TTTAGTCTAA
* * * *** * *
7305790 TTAACTGCAATGTCGGGAAAGTAAGATTTGTTATTGTAGCTTCAATCAGTTCCACTACACTGCCA
1 TTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCA
* * *
7305855 GGGAAGTAAAATTCGCTGTTGTAGCTTCAATCTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * * * **
7305890 TTAACTGCAATGTCGAGGAAGAAAGATTCGCTGTTGTAACTTCAATATGTTCCACTGCACCACCA
1 TTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCA
* * *
7305955 AGGAAGTAAGATTCACCGTTGTGGCTTCAATATTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* *
7305990 TTAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGTACTGCCA
1 TTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCA
*
7306055 AGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * * *
7306090 TTGACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGCAGCTTCAATCTGTTCCACTGTACCGCCA
1 TTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCA
*
7306155 GAGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * * * * **
7306190 TTAATTGCAATATAGGGGAAGCAAGATTCGTCATTGTAGCTTCAATCTGTTCCAGTGCACCACCA
1 TTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCA
***
7306255 GGGAAGTAAGATTTATCGTTGTGGCTTCAATCTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * * **
7306290 TTAATTGCAATGTCGGAGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTCCCACTATACTGCCA
1 TTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCA
* * *
7306355 GGAAAGTAAGATTCACCGTTGTGGCTTCAATTTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * *
7306390 TTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATATGTCCCACTGCACTGCCA
1 TTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCA
* * *
7306455 AGAAAGTAAGATTCGTCGTTGTGGCTTCAATCTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * *
7306490 TTAATTGCAATGTCGGGGAAACAAGATTTGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGTCA
1 TTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCA----C-
7306555 GTGATGCACCGCTAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
61 ----TG---C-C-AGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * * *
7306604 TT-A---CAATGTTGGGGAAGCAAGATTCACTGTTGTAGCTTGAATCTGTTCCACTGCA-TCGCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACT-GCC
7306664 AGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
65 AGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
*
7306700 TTAATTGCAA
1 TTAACTGCAA
7306710 CCTCAGGGGT
Statistics
Matches: 715, Mismatches: 86, Indels: 38
0.85 0.10 0.05
Matches are distributed among these distances:
96 38 0.05
97 1 0.00
98 1 0.00
100 587 0.82
101 1 0.00
104 1 0.00
109 2 0.00
110 46 0.06
112 1 0.00
113 2 0.00
114 35 0.05
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (100 bp):
TTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCA
GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
Found at i:7306636 original size:46 final size:48
Alignment explanation
Indices: 7306564--7306702 Score: 156
Period size: 46 Copynumber: 2.9 Consensus size: 48
7306554 AGTGATGCAC
7306564 CGCTAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTAC-AAT
1 CGCTAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTACGAAT
* * * * * * * ** *
7306611 -GTTGGGGAAGCAAGATTCACTGTTGTAGCTTGAATCTGTTCCACTGCAT
1 CGCTAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCT-TTTTAC-GAAT
7306660 CGCTAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTA
1 CGCTAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTA
7306703 ATTGCAACCT
Statistics
Matches: 69, Mismatches: 19, Indels: 6
0.73 0.20 0.06
Matches are distributed among these distances:
46 30 0.43
47 4 0.06
49 5 0.07
50 30 0.43
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (48 bp):
CGCTAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTTACGAAT
Found at i:7307615 original size:18 final size:17
Alignment explanation
Indices: 7307594--7307631 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
7307584 TTTTTTGTTC
*
7307594 TTCTTTTCTTTTCTATTT
1 TTCTTTTCGTTTCT-TTT
7307612 TTCTTTTCGTTTCTTTT
1 TTCTTTTCGTTTCTTTT
7307629 TTC
1 TTC
7307632 AAGTGAAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (17 bp):
TTCTTTTCGTTTCTTTT
Found at i:7310786 original size:24 final size:25
Alignment explanation
Indices: 7310759--7310811 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 25
7310749 GGCTCTTTCG
*
7310759 TGAAATTTAATGCAAATG-ATGCAA
1 TGAAATGTAATGCAAATGAATGCAA
*
7310783 TGAAATGTAATGCAAATGAATGGAA
1 TGAAATGTAATGCAAATGAATGCAA
7310808 TGAA
1 TGAA
7310812 TGCAAAAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 17 0.65
25 9 0.35
ACGTcount: A:0.47, C:0.06, G:0.21, T:0.26
Consensus pattern (25 bp):
TGAAATGTAATGCAAATGAATGCAA
Found at i:7312889 original size:120 final size:120
Alignment explanation
Indices: 7312631--7312874 Score: 443
Period size: 120 Copynumber: 2.0 Consensus size: 120
7312621 AATCAGTGCA
7312631 ACCTCAATGGTATAATCATCCTTTTAACTTACTTAACCAAGACAAATTATACCATCATCTCACAC
1 ACCTCAATGGTATAATCATCCTTTTAACTTACTTAACCAAGACAAATTATACCATCATCTCACAC
* * * *
7312696 ATAGAATGTCTCACCTATCATACTTCTCAATTATTTCACTTAATAGACCAAATAT
66 ATAAAATGACCCACCTATCATACTTCTCAATTATGTCACTTAATAGACCAAATAT
*
7312751 ACCTCAATGGTATAATCATCCTTTTAACTTACTTAACCAAGCCAAATTATACCATCATCTCACAC
1 ACCTCAATGGTATAATCATCCTTTTAACTTACTTAACCAAGACAAATTATACCATCATCTCACAC
7312816 ATAAAATGACCCACCTATCATACTTCTCAATTATGTCACTTAATAGACCAAATAT
66 ATAAAATGACCCACCTATCATACTTCTCAATTATGTCACTTAATAGACCAAATAT
7312871 ACCT
1 ACCT
7312875 AACCTTTATC
Statistics
Matches: 119, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 119 1.00
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.32
Consensus pattern (120 bp):
ACCTCAATGGTATAATCATCCTTTTAACTTACTTAACCAAGACAAATTATACCATCATCTCACAC
ATAAAATGACCCACCTATCATACTTCTCAATTATGTCACTTAATAGACCAAATAT
Found at i:7312936 original size:2 final size:2
Alignment explanation
Indices: 7312931--7312968 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
7312921 TCAAAATTAC
*
7312931 CA CA CA CA CA CA CA CA CA CA GA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
7312969 TATATATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.47, G:0.03, T:0.00
Consensus pattern (2 bp):
CA
Found at i:7314513 original size:21 final size:21
Alignment explanation
Indices: 7314489--7314530 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7314479 CTTTTTAATT
7314489 AATTGACTGCCGAAACGTTAA
1 AATTGACTGCCGAAACGTTAA
* * *
7314510 AATTTACTGTCGAAACTTTAA
1 AATTGACTGCCGAAACGTTAA
7314531 CACTACCATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (21 bp):
AATTGACTGCCGAAACGTTAA
Found at i:7317192 original size:50 final size:50
Alignment explanation
Indices: 7317113--7317268 Score: 159
Period size: 50 Copynumber: 3.1 Consensus size: 50
7317103 TTGATCATAT
* * * * *
7317113 TTGGCACCGAGATGAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCG
1 TTGGCACCAAGATGAGAGGTCCCACGTAAGACCATGTCTGAGACATGGCA
*
7317163 TTGGCACCAAGATGAGAGGTCCCCCGTAAGACCATGTCTGAGACATGGCA
1 TTGGCACCAAGATGAGAGGTCCCACGTAAGACCATGTCTGAGACATGGCA
* * * ** * * * * * *
7317213 TGGGCACCTATATGAGAACTCTCATGTAAGACCATATCTGGGATATAGCA
1 TTGGCACCAAGATGAGAGGTCCCACGTAAGACCATGTCTGAGACATGGCA
7317263 TTGGCA
1 TTGGCA
7317269 GTACAAGAAA
Statistics
Matches: 87, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 87 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
TTGGCACCAAGATGAGAGGTCCCACGTAAGACCATGTCTGAGACATGGCA
Found at i:7322584 original size:21 final size:21
Alignment explanation
Indices: 7322560--7322624 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
7322550 AGATTAAATG
7322560 TGAAATCGGTTATTACACATA
1 TGAAATCGGTTATTACACATA
* *** *
7322581 TG-AATTGAAAGATTA-A-ATG
1 TGAAATCG-GTTATTACACATA
7322600 TGAAATCGGTTATTACACATA
1 TGAAATCGGTTATTACACATA
7322621 TGAA
1 TGAA
7322625 TTGAGTGTGA
Statistics
Matches: 30, Mismatches: 10, Indels: 8
0.62 0.21 0.17
Matches are distributed among these distances:
19 8 0.27
20 10 0.33
21 12 0.40
ACGTcount: A:0.42, C:0.09, G:0.17, T:0.32
Consensus pattern (21 bp):
TGAAATCGGTTATTACACATA
Found at i:7322595 original size:40 final size:40
Alignment explanation
Indices: 7322540--7322628 Score: 169
Period size: 40 Copynumber: 2.2 Consensus size: 40
7322530 TGAATTCAAA
*
7322540 ATGAATAGAAAGATTAAATGTGAAATCGGTTATTACACAT
1 ATGAATTGAAAGATTAAATGTGAAATCGGTTATTACACAT
7322580 ATGAATTGAAAGATTAAATGTGAAATCGGTTATTACACAT
1 ATGAATTGAAAGATTAAATGTGAAATCGGTTATTACACAT
7322620 ATGAATTGA
1 ATGAATTGA
7322629 GTGTGATTAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.44, C:0.07, G:0.18, T:0.31
Consensus pattern (40 bp):
ATGAATTGAAAGATTAAATGTGAAATCGGTTATTACACAT
Found at i:7326153 original size:2 final size:2
Alignment explanation
Indices: 7326146--7326207 Score: 124
Period size: 2 Copynumber: 31.0 Consensus size: 2
7326136 TTAACTGACC
7326146 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7326188 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
7326208 TATTANNNNN
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7326322 original size:2 final size:2
Alignment explanation
Indices: 7326315--7326365 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
7326305 NNNNNNNNAC
7326315 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7326357 TA TA TA TA T
1 TA TA TA TA T
7326366 TAGCCTATAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7327102 original size:25 final size:25
Alignment explanation
Indices: 7327068--7327120 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
7327058 AATGATGTTG
7327068 GTTTAGTGAATATGTAGGCATTCCT
1 GTTTAGTGAATATGTAGGCATTCCT
7327093 GTTTAGTGAATATGTAGGCATTCCT
1 GTTTAGTGAATATGTAGGCATTCCT
7327118 GTT
1 GTT
7327121 GTGGTATGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.23, C:0.11, G:0.25, T:0.42
Consensus pattern (25 bp):
GTTTAGTGAATATGTAGGCATTCCT
Found at i:7329171 original size:11 final size:11
Alignment explanation
Indices: 7329155--7329179 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7329145 AATCTTAAAA
7329155 TTTATTTATAT
1 TTTATTTATAT
7329166 TTTATTTATAT
1 TTTATTTATAT
7329177 TTT
1 TTT
7329180 TAAAAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTATTTATAT
Found at i:7329192 original size:18 final size:20
Alignment explanation
Indices: 7329169--7329205 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7329159 TTTATATTTT
7329169 ATTTAT-AT-TTTTAAAAAA
1 ATTTATAATATTTTAAAAAA
7329187 ATTTATAATATTTTAAAAA
1 ATTTATAATATTTTAAAAA
7329206 TATAAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 2 0.12
20 9 0.53
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTTATAATATTTTAAAAAA
Found at i:7329282 original size:20 final size:20
Alignment explanation
Indices: 7329213--7329281 Score: 90
Period size: 19 Copynumber: 3.6 Consensus size: 20
7329203 AAATATAAAT
*
7329213 TTTTGAATTTTTATAAA-TA
1 TTTTGAATTTTTAAAAATTA
*
7329232 TTTAGAA-TTTTAAAAATTA
1 TTTTGAATTTTTAAAAATTA
*
7329251 TTTTGAATTTTTGAAAATTA
1 TTTTGAATTTTTAAAAATTA
7329271 TTTTG-ATTTTT
1 TTTTGAATTTTT
7329282 TTTTTTTGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
18 8 0.18
19 20 0.45
20 16 0.36
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (20 bp):
TTTTGAATTTTTAAAAATTA
Found at i:7333117 original size:16 final size:15
Alignment explanation
Indices: 7333092--7333130 Score: 62
Period size: 16 Copynumber: 2.6 Consensus size: 15
7333082 ATATATATTT
7333092 AAAT-TTATAAAATA
1 AAATATTATAAAATA
7333106 AAATCATTATAAAATA
1 AAAT-ATTATAAAATA
7333122 AAATATTAT
1 AAATATTAT
7333131 GGAACTATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 4 0.17
15 5 0.22
16 14 0.61
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (15 bp):
AAATATTATAAAATA
Found at i:7333456 original size:22 final size:21
Alignment explanation
Indices: 7333428--7333494 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 21
7333418 TCTCTGATTA
7333428 TTAGCACATCATTGCTCTCTGT
1 TTAGCACAT-ATTGCTCTCTGT
7333450 TTAGCACATATGTGCTCTCTGT
1 TTAGCACATAT-TGCTCTCTGT
* *
7333472 ATAGCA-ATTTAGTGCTCTCTGT
1 TTAGCACA--TATTGCTCTCTGT
7333494 T
1 T
7333495 CATTAGTGCA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
21 3 0.08
22 34 0.87
23 2 0.05
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.42
Consensus pattern (21 bp):
TTAGCACATATTGCTCTCTGT
Found at i:7346887 original size:21 final size:21
Alignment explanation
Indices: 7346863--7346904 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
7346853 TAAGTGTCAC
7346863 AATT-AAAATGGATATTAATTT
1 AATTGAAAATGGAT-TTAATTT
* *
7346884 AATTGATAATTGATTTAATTT
1 AATTGAAAATGGATTTAATTT
7346905 TTTTATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.48
Consensus pattern (21 bp):
AATTGAAAATGGATTTAATTT
Found at i:7348618 original size:28 final size:28
Alignment explanation
Indices: 7348581--7348641 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
7348571 AAAATGTTAC
*
7348581 AATATATTAACGTAAATAACTAAAATAT
1 AATATATTAACATAAATAACTAAAATAT
* *
7348609 AATATTTTAATATAAATAACTAAAATAT
1 AATATATTAACATAAATAACTAAAATAT
7348637 AATAT
1 AATAT
7348642 GAAGTAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (28 bp):
AATATATTAACATAAATAACTAAAATAT
Found at i:7348637 original size:15 final size:15
Alignment explanation
Indices: 7348593--7348638 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
7348583 TATATTAACG
7348593 TAAATAACTAAAATA
1 TAAATAACTAAAATA
* **
7348608 T-AAT-ATTTTAATA
1 TAAATAACTAAAATA
7348621 TAAATAACTAAAATA
1 TAAATAACTAAAATA
7348636 TAA
1 TAA
7348639 TATGAAGTAA
Statistics
Matches: 23, Mismatches: 6, Indels: 4
0.70 0.18 0.12
Matches are distributed among these distances:
13 7 0.30
14 6 0.26
15 10 0.43
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (15 bp):
TAAATAACTAAAATA
Found at i:7357825 original size:20 final size:20
Alignment explanation
Indices: 7357791--7357832 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7357781 AACTATTTAA
** *
7357791 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
7357811 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
7357831 AT
1 AT
7357833 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:7363347 original size:20 final size:20
Alignment explanation
Indices: 7363313--7363354 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7363303 AACTATTTAA
** *
7363313 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
7363333 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
7363353 AT
1 AT
7363355 GTATTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:7369948 original size:474 final size:476
Alignment explanation
Indices: 7369354--7370384 Score: 1818
Period size: 474 Copynumber: 2.2 Consensus size: 476
7369344 GGCCAAGTTT
* * * *
7369354 TTCTTCTCAGCTTCTG-CAGTCCTCAGCTTTTCAGCAAGATCATTCTTCTCTTGAGCTACTGCCT
1 TTCTTATCAGCTTCAGTC-GTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTTCCT
7369418 GCATCATTTAAGTTTTCACCACAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTT
65 GCATCATTTAAGTTTTCACCACAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTT
*
7369483 TACAGCCAATAGAGGCTTTTGTCCTTCTGCGAAGATACTCTAGCAAGGACAACCAGGTCAGATGC
130 TACAGCCAATAGAGGCTTTTGTCCTTCTGCGAAGATAATCTAGCAAGGACAACCAGGTCAGATGC
* *
7369548 AAAACAAAATTGAACTGAATGTGAAGTTTTAGATTTATGGTAGAAAGAACCATTATCATAACT-G
195 AAAACAAAATTGAACTGAATGTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAACTAG
*
7369612 AGACCCAGAGAAAGTAAG-AG-ACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATTATTA
260 -GACCCAGAGAAAGTAAGAAGAACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATTA
7369675 TAGTTCTTACAGCGTCCAATTTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTC
324 TAGTTCTTACAGCGTCCAATTTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTC
* *
7369740 TTGCTTCAACGTCTGGACTTCATTTGAAAGTGACTGTTGTTCTGCTTTTTGAGCTCCAACTTCTG
389 TTGCTTCAACATCTGGACTTCATTTGAAAGTGACTGTTGTTCTGCGTTTTGAGCTCCAACTTCTG
*
7369805 TTCTCAATTCTTCAACGAATCTG
454 TTCTCAATTCTTCAACGAAGCTG
*
7369828 TTCTTATCAGCTTCAGTCTTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTTCCTG
1 TTCTTATCAGCTTCAGTCGTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTTCCTG
7369893 CATCATTTAAGTTTTCACCACAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTTT
66 CATCATTTAAGTTTTCACCACAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTTT
*
7369958 ACAGCCAATAGAGGCTTTTGTCCTTCTGCGAGGATAATCTAGCAAGGACAACCAGGTCAGATGCA
131 ACAGCCAATAGAGGCTTTTGTCCTTCTGCGAAGATAATCTAGCAAGGACAACCAGGTCAGATGCA
7370023 AAACAAAATTGAACTGAATGTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAACTAGG
196 AAACAAAATTGAACTGAATGTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAACTAGG
*
7370088 ACCCAGAGAAAGTAAGAAGAAACAAACCTGCAAACTATTTAACTTCACTTCCAGCTCATCATTAT
261 ACCCAGAGAAAGTAAGAAG-AACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATTAT
*
7370153 AGTTCTTACAGCGTCCAATTTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCTTAAGTTCT
325 AGTTCTTACAGCGTCCAATTTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTCT
*
7370218 TGCTTCAACATCTGGACTTCATTTGAAAGTGACTGTTGTTCTGCGTTTTGAGCTTCAACTTCTGT
390 TGCTTCAACATCTGGACTTCATTTGAAAGTGACTGTTGTTCTGCGTTTTGAGCTCCAACTTCTGT
*
7370283 TCTCAATTCTTCAACGAGGCTG
455 TCTCAATTCTTCAACGAAGCTG
* * **
7370305 TTCTTATCAGCTTCGGTGGTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAATTACTTCCTG
1 TTCTTATCAGCTTCAGTCGTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTTCCTG
7370370 CATCATTTAAGTTTT
66 CATCATTTAAGTTTT
7370385 TCCTCAGTAC
Statistics
Matches: 530, Mismatches: 22, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
474 263 0.50
475 4 0.01
477 263 0.50
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (476 bp):
TTCTTATCAGCTTCAGTCGTCCTCAGCTTTTTAGCAAGATCATTCTTCTCTTGAGCTACTTCCTG
CATCATTTAAGTTTTCACCACAGTAAGATGACTCCTCAAAGGCAAAGGGCACTTGGAAACATTTT
ACAGCCAATAGAGGCTTTTGTCCTTCTGCGAAGATAATCTAGCAAGGACAACCAGGTCAGATGCA
AAACAAAATTGAACTGAATGTGAAGTTTTAGATTTACGGTAGAAAGAACCATTAACATAACTAGG
ACCCAGAGAAAGTAAGAAGAACAAACCTGCAAACTATTCAACTTCACTTCCAGCTCATCATTATA
GTTCTTACAGCGTCCAATTTCCTCTTCCTTCTCCTGTTTCTCTCTTTTGATCTGCCTAAGTTCTT
GCTTCAACATCTGGACTTCATTTGAAAGTGACTGTTGTTCTGCGTTTTGAGCTCCAACTTCTGTT
CTCAATTCTTCAACGAAGCTG
Found at i:7379872 original size:88 final size:88
Alignment explanation
Indices: 7379723--7380477 Score: 1240
Period size: 88 Copynumber: 8.6 Consensus size: 88
7379713 NNNNNNNNNN
* * *
7379723 AAGGTTTGTGTCTTCGACCCGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCA
1 AAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGAAAGGCAAGATCTTTTGTCTTCAACCA
*
7379788 GCTCCATTACAACCGAGAGAGGC
66 GCTCCATCACAACCGAGAGAGGC
* * *
7379811 AAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTCTCTTCAACCA
1 AAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGAAAGGCAAGATCTTTTGTCTTCAACCA
* *
7379876 ACTCCATCATAACCGAGAGAGGC
66 GCTCCATCACAACCGAGAGAGGC
* * * *
7379899 AAGGTTTGTGTCTTCGACCTGATTCGCTGTCAATACAGAAAGGTAAGATATTTTATCTTCAACCA
1 AAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGAAAGGCAAGATCTTTTGTCTTCAACCA
7379964 GCTCCATCACAACCGAGAGAGGC
66 GCTCCATCACAACCGAGAGAGGC
* * * * *
7379987 AAGGTTTGTGTGTTTGACCTGATTTGCTGTCAATACAGAAAGGCAAAATCTTTTGTCTTCAACCA
1 AAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGAAAGGCAAGATCTTTTGTCTTCAACCA
7380052 GCTCCATCACAACCGAGAGAGGC
66 GCTCCATCACAACCGAGAGAGGC
*
7380075 AAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCAACCA
1 AAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGAAAGGCAAGATCTTTTGTCTTCAACCA
7380140 GCTCCATCACAACCGAGAGAGGC
66 GCTCCATCACAACCGAGAGAGGC
* *
7380163 AAGGTTTGTGTCTTCGACTTGCTTCGCTGTCAATACAGAAAGGCAAGATCTTTTGTCTTCAGCCA
1 AAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGAAAGGCAAGATCTTTTGTCTTCAACCA
*
7380228 GCTCCATCACAATCGAGAGAGGC
66 GCTCCATCACAACCGAGAGAGGC
*
7380251 AAGGTTTGTGTCTTCGACTTGCTTCGCTGTCAATACAGAAAGGCAAGATCTTTTGTCTTCAACCA
1 AAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGAAAGGCAAGATCTTTTGTCTTCAACCA
*
7380316 GCTCCATCACAATCGAGAGAGGC
66 GCTCCATCACAACCGAGAGAGGC
*
7380339 AAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGAAAGGCAAGATCTTTTGTCTTCAGCCA
1 AAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGAAAGGCAAGATCTTTTGTCTTCAACCA
* *
7380404 GCTCCATCACAATCGAGAGAGAC
66 GCTCCATCACAACCGAGAGAGGC
* * *
7380427 AAGGTTTGTGTCTTCGACCTGCTTCGCTTTCAATGCAGGAAGGCAAGATCT
1 AAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGAAAGGCAAGATCT
7380478 GCAACTTCAT
Statistics
Matches: 630, Mismatches: 37, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 630 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (88 bp):
AAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGAAAGGCAAGATCTTTTGTCTTCAACCA
GCTCCATCACAACCGAGAGAGGC
Found at i:7381759 original size:16 final size:14
Alignment explanation
Indices: 7381706--7381759 Score: 63
Period size: 16 Copynumber: 3.6 Consensus size: 14
7381696 TTAGCCTCTC
*
7381706 CATTTTTACTTTTT
1 CATTTTTTCTTTTT
7381720 CATTTTTATCATTTTT
1 CATTTTT-TC-TTTTT
7381736 CATTTTTTCTTTCATT
1 CATTTTTTCTTT--TT
7381752 CATTTTTT
1 CATTTTTT
7381760 TATATATATT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
14 10 0.29
15 3 0.09
16 22 0.63
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (14 bp):
CATTTTTTCTTTTT
Found at i:7382610 original size:24 final size:24
Alignment explanation
Indices: 7382572--7382634 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
7382562 TGACCTCTCC
* *
7382572 TTTTTTTTAAATTTTTGA-CTTTGA
1 TTTTTTTT-ATTTTTTTATCTTTGA
*
7382596 TTTTTTTTATTTTTTTATTTTTGA
1 TTTTTTTTATTTTTTTATCTTTGA
* *
7382620 TTTTTGTTGTTTTTT
1 TTTTTTTTATTTTTT
7382635 GTTTTTTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
23 7 0.21
24 26 0.79
ACGTcount: A:0.13, C:0.02, G:0.08, T:0.78
Consensus pattern (24 bp):
TTTTTTTTATTTTTTTATCTTTGA
Found at i:7382611 original size:10 final size:10
Alignment explanation
Indices: 7382591--7382646 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 10
7382581 AATTTTTGAC
*
7382591 TTTGATTTTT
1 TTTGTTTTTT
*
7382601 TTTATTTTTT
1 TTTGTTTTTT
*
7382611 TATT-TTTGATT
1 T-TTGTTT-TTT
*
7382622 TTTGTTGTTT
1 TTTGTTTTTT
7382632 TTTGTTTTTT
1 TTTGTTTTTT
7382642 TTTGT
1 TTTGT
7382647 CTGAACTCAC
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
10 30 0.81
11 7 0.19
ACGTcount: A:0.07, C:0.00, G:0.11, T:0.82
Consensus pattern (10 bp):
TTTGTTTTTT
Found at i:7382633 original size:17 final size:17
Alignment explanation
Indices: 7382613--7382646 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7382603 TATTTTTTTA
7382613 TTTTTGATTTTTGTTGT
1 TTTTTGATTTTTGTTGT
* *
7382630 TTTTTGTTTTTTTTTGT
1 TTTTTGATTTTTGTTGT
7382647 CTGAACTCAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.00, G:0.15, T:0.82
Consensus pattern (17 bp):
TTTTTGATTTTTGTTGT
Found at i:7382633 original size:30 final size:32
Alignment explanation
Indices: 7382573--7382642 Score: 83
Period size: 31 Copynumber: 2.2 Consensus size: 32
7382563 GACCTCTCCT
7382573 TTTTTTTAAATTTTTGACTTTGATT-TTTTTTA
1 TTTTTTT-AATTTTTGACTTTGATTGTTTTTTA
* *
7382605 TTTTTTT-ATTTTTGATTTTTG-TTGTTTTTTG
1 TTTTTTTAATTTTTGA-CTTTGATTGTTTTTTA
7382636 TTTTTTT
1 TTTTTTT
7382643 TTGTCTGAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 10 0.29
31 17 0.50
32 7 0.21
ACGTcount: A:0.11, C:0.01, G:0.09, T:0.79
Consensus pattern (32 bp):
TTTTTTTAATTTTTGACTTTGATTGTTTTTTA
Found at i:7400309 original size:27 final size:27
Alignment explanation
Indices: 7400265--7400336 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
7400255 ACACCTTGGG
*
7400265 ATCCTCGTGTTTAGTGTCTCAGCGGACT
1 ATCCT-GTGTTTACTGTCTCAGCGGACT
* * *
7400293 ATCCTGTTTTTACTGTCTTAGTGGACT
1 ATCCTGTGTTTACTGTCTCAGCGGACT
**
7400320 ATTTTGTGTTTACTGTC
1 ATCCTGTGTTTACTGTC
7400337 CCGGTGGACT
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
27 32 0.86
28 5 0.14
ACGTcount: A:0.14, C:0.19, G:0.21, T:0.46
Consensus pattern (27 bp):
ATCCTGTGTTTACTGTCTCAGCGGACT
Found at i:7409621 original size:9 final size:9
Alignment explanation
Indices: 7409604--7409634 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
7409594 TCGAGTTGAT
7409604 TCGAATAAC
1 TCGAATAAC
*
7409613 TCGATTAAC
1 TCGAATAAC
7409622 TCGAATAAC
1 TCGAATAAC
7409631 TCGA
1 TCGA
7409635 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:7413804 original size:22 final size:22
Alignment explanation
Indices: 7413770--7414046 Score: 320
Period size: 22 Copynumber: 12.6 Consensus size: 22
7413760 AAGTAAAAAT
7413770 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * *
7413792 TATTGATTGAATGCTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
*
7413814 TGTTGATTAAATGTTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * *
7413836 TATTGATTGAATGCTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
7413858 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* *
7413880 TGTTTATTTAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * *
7413902 TATTGATTGAATGCTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
7413924 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * * * *
7413946 TATTGGTTGAATGTTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
* *
7413968 TGTTGATTAAATGTTATCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * *
7413990 TGTTGATTGAATGATGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
* * *
7414012 TGCTGATTAAATGTTGTCTAAA
1 TGTTGATTAAATGCTGTCCAAA
*
7414034 TGTTAATTAAATG
1 TGTTGATTAAATG
7414047 ATATCTGAAT
Statistics
Matches: 211, Mismatches: 44, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 211 1.00
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.41
Consensus pattern (22 bp):
TGTTGATTAAATGCTGTCCAAA
Found at i:7414057 original size:22 final size:22
Alignment explanation
Indices: 7413968--7414059 Score: 67
Period size: 22 Copynumber: 4.2 Consensus size: 22
7413958 GTTGTCCAAT
* * *
7413968 TGTTGATTAAATGTTATCCAAA
1 TGTTAATTAAATGATATCTAAA
* * * * *
7413990 TGTTGATTGAATGATGTCCAAT
1 TGTTAATTAAATGATATCTAAA
* * * *
7414012 TGCTGATTAAATGTTGTCTAAA
1 TGTTAATTAAATGATATCTAAA
*
7414034 TGTTAATTAAATGATATCTGAA
1 TGTTAATTAAATGATATCTAAA
7414056 TGTT
1 TGTT
7414060 GGATAATTGC
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 56 1.00
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.42
Consensus pattern (22 bp):
TGTTAATTAAATGATATCTAAA
Found at i:7418772 original size:33 final size:33
Alignment explanation
Indices: 7418730--7418879 Score: 105
Period size: 33 Copynumber: 4.5 Consensus size: 33
7418720 CCCCAAGGGC
7418730 TTGCTAAGTGCTGATTCCCCGATTCAGTGGTGG
1 TTGCTAAGTGCTGATTCCCCGATTCAGTGGTGG
* *
7418763 TTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAGGGGG
1 TTGCTAAGTGCTGATTCC-CCG-A--TT-CA-GT---GGTGG
*
7418805 TTGCTAAGTGCTGATTCCCC----CA-AGG-GG
1 TTGCTAAGTGCTGATTCCCCGATTCAGTGGTGG
* * * *
7418832 TTTCTAAGTGTTGATTCCCCGAATCATTGGTGG
1 TTGCTAAGTGCTGATTCCCCGATTCAGTGGTGG
*
7418865 TTGCTAAGTACTGAT
1 TTGCTAAGTGCTGAT
7418880 CCCACATTAT
Statistics
Matches: 92, Mismatches: 10, Indels: 30
0.70 0.08 0.23
Matches are distributed among these distances:
27 20 0.22
28 2 0.02
31 2 0.02
32 2 0.02
33 33 0.36
34 3 0.03
35 1 0.01
37 2 0.02
38 1 0.01
39 2 0.02
41 2 0.02
42 22 0.24
ACGTcount: A:0.20, C:0.19, G:0.27, T:0.34
Consensus pattern (33 bp):
TTGCTAAGTGCTGATTCCCCGATTCAGTGGTGG
Found at i:7418872 original size:102 final size:102
Alignment explanation
Indices: 7418696--7418924 Score: 359
Period size: 102 Copynumber: 2.2 Consensus size: 102
7418686 ATTGAATATA
* *
7418696 AAGGGGGTTGCTAAGTGCTAATTCCCCCAAGGGCTTGCTAAGTGCTGATTCCCCGATTCAGTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGCTTGCTAAGTGCTGATTCCCCGAATCAGTGGT
* * *
7418761 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTG
66 GGTTGCTAAGTACTGATCCCACAGTATTTTAAATGTG
* * * *
7418798 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTTCTAAGTGTTGATTCCCCGAATCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGCTTGCTAAGTGCTGATTCCCCGAATCAGTGGT
*
7418863 GGTTGCTAAGTACTGATCCCACATTATTTTAAATGTG
66 GGTTGCTAAGTACTGATCCCACAGTATTTTAAATGTG
*
7418900 AAAGGGGTTGCTAAGTGCTGATTCC
1 AAGGGGGTTGCTAAGTGCTGATTCC
7418925 ACCGTATTTT
Statistics
Matches: 116, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
102 116 1.00
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (102 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGCTTGCTAAGTGCTGATTCCCCGAATCAGTGGT
GGTTGCTAAGTACTGATCCCACAGTATTTTAAATGTG
Found at i:7418933 original size:42 final size:43
Alignment explanation
Indices: 7418863--7418967 Score: 149
Period size: 43 Copynumber: 2.5 Consensus size: 43
7418853 AATCATTGGT
* * *
7418863 GGTTGCTAAGTACTGATCCCACATTA-TTTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCCACAGTATTTTTAAATGTGAAAGG
* *
7418905 GGTTGCTAAGTGCTGATTCCACCGTATTTTTGAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCCACAGTATTTTTAAATGTGAAAGG
*
7418948 GGTTACTAAGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
7418968 CCGAATCACT
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
42 22 0.39
43 34 0.61
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (43 bp):
GGTTGCTAAGTGCTGATTCCACAGTATTTTTAAATGTGAAAGG
Found at i:7423992 original size:15 final size:16
Alignment explanation
Indices: 7423967--7423997 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
7423957 CGAGTGAATT
7423967 TTTTATTATATTTTAA
1 TTTTATTATATTTTAA
7423983 TTTT-TTATATTTTAA
1 TTTTATTATATTTTAA
7423998 ATGTGAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTATTATATTTTAA
Found at i:7424397 original size:2 final size:2
Alignment explanation
Indices: 7424390--7424414 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7424380 AAAACAATAC
7424390 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7424415 GCAGAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7429369 original size:20 final size:20
Alignment explanation
Indices: 7429346--7429439 Score: 100
Period size: 20 Copynumber: 4.7 Consensus size: 20
7429336 TTAAAAGGGG
*
7429346 CACCGAAGTGCAAACATGGA
1 CACCGAAGTGCAAACAAGGA
*
7429366 CACCGAAGTGTAAACAACGG-
1 CACCGAAGTGCAAACAA-GGA
* *
7429386 CACCGGAGTGCAATCAAGGA
1 CACCGAAGTGCAAACAAGGA
* * * *
7429406 CACCAAAATGTAAACAAGGG
1 CACCGAAGTGCAAACAAGGA
7429426 CACCGAAGTGCAAA
1 CACCGAAGTGCAAA
7429440 AATATAGACA
Statistics
Matches: 58, Mismatches: 14, Indels: 4
0.76 0.18 0.05
Matches are distributed among these distances:
19 2 0.03
20 54 0.93
21 2 0.03
ACGTcount: A:0.41, C:0.24, G:0.24, T:0.10
Consensus pattern (20 bp):
CACCGAAGTGCAAACAAGGA
Found at i:7429388 original size:40 final size:40
Alignment explanation
Indices: 7429344--7429439 Score: 138
Period size: 40 Copynumber: 2.4 Consensus size: 40
7429334 TGTTAAAAGG
* * *
7429344 GGCACCGAAGTGCAAACATGGACACCGAAGTGTAAACAAC
1 GGCACCGAAGTGCAAACAAGGACACCAAAATGTAAACAAC
* * *
7429384 GGCACCGGAGTGCAATCAAGGACACCAAAATGTAAACAAG
1 GGCACCGAAGTGCAAACAAGGACACCAAAATGTAAACAAC
7429424 GGCACCGAAGTGCAAA
1 GGCACCGAAGTGCAAA
7429440 AATATAGACA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.41, C:0.24, G:0.26, T:0.09
Consensus pattern (40 bp):
GGCACCGAAGTGCAAACAAGGACACCAAAATGTAAACAAC
Found at i:7432422 original size:31 final size:32
Alignment explanation
Indices: 7432385--7432454 Score: 108
Period size: 31 Copynumber: 2.2 Consensus size: 32
7432375 TATTCATTTA
7432385 TTTATAATTTTTTTTATAATTTGT-ATGT-AT
1 TTTATAATTTTTTTTATAATTTGTCATGTAAT
*
7432415 TTGTATAATTTTTTTTATAATTTTTCATGTAAT
1 TT-TATAATTTTTTTTATAATTTGTCATGTAAT
7432448 TTTATAA
1 TTTATAA
7432455 AATATTGTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
30 2 0.06
31 21 0.58
32 9 0.25
33 4 0.11
ACGTcount: A:0.29, C:0.01, G:0.06, T:0.64
Consensus pattern (32 bp):
TTTATAATTTTTTTTATAATTTGTCATGTAAT
Found at i:7432526 original size:7 final size:7
Alignment explanation
Indices: 7432514--7432547 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
7432504 TTAAGGTTAT
*
7432514 AATTTTA
1 AATTTTG
7432521 AATTTTG
1 AATTTTG
7432528 AATTTTG
1 AATTTTG
7432535 AATTTTG
1 AATTTTG
7432542 AATTTT
1 AATTTT
7432548 TATAATCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (7 bp):
AATTTTG
Found at i:7438480 original size:162 final size:162
Alignment explanation
Indices: 7438213--7438535 Score: 628
Period size: 162 Copynumber: 2.0 Consensus size: 162
7438203 ACTATAGAAC
*
7438213 AAATCTCTTTGGGTAAACTACACAAATGATCATTTAACTTTTACATACTTTTATCATTTTAGCCA
1 AAATCTCTTTGGGTAAACAACACAAATGATCATTTAACTTTTACATACTTTTATCATTTTAGCCA
7438278 CTCGTCATTAATTTGTCATTACATACACTCATTATGATCACCCAACTTTAGTAAGTTTTCATTTT
66 CTCGTCATTAATTTGTCATTACATACACTCATTATGATCACCCAACTTTAGTAAGTTTTCATTTT
7438343 GGTCACTATTTTATATTTTTAATTTCCTTTAA
131 GGTCACTATTTTATATTTTTAATTTCCTTTAA
7438375 AAATCTCTTTGGGTAAACAACACAAATGATCATTTAACTTTTACATACTTTTATCATTTTAGCCA
1 AAATCTCTTTGGGTAAACAACACAAATGATCATTTAACTTTTACATACTTTTATCATTTTAGCCA
7438440 CTCGTCATTAATTTGTCATTACATACACTCATTATGATCACCCAACTTTAGTAAGTTTTCATTTT
66 CTCGTCATTAATTTGTCATTACATACACTCATTATGATCACCCAACTTTAGTAAGTTTTCATTTT
*
7438505 GGTCACTATTTTATATTTTTAATTTCTTTTA
131 GGTCACTATTTTATATTTTTAATTTCCTTTA
7438536 GGTTTATTTT
Statistics
Matches: 159, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
162 159 1.00
ACGTcount: A:0.30, C:0.18, G:0.07, T:0.45
Consensus pattern (162 bp):
AAATCTCTTTGGGTAAACAACACAAATGATCATTTAACTTTTACATACTTTTATCATTTTAGCCA
CTCGTCATTAATTTGTCATTACATACACTCATTATGATCACCCAACTTTAGTAAGTTTTCATTTT
GGTCACTATTTTATATTTTTAATTTCCTTTAA
Found at i:7438644 original size:17 final size:17
Alignment explanation
Indices: 7438622--7438654 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7438612 AGAAAAACCA
7438622 TTTTATCTATTTATTTC
1 TTTTATCTATTTATTTC
*
7438639 TTTTATTTATTTATTT
1 TTTTATCTATTTATTT
7438655 TAGAATCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTATCTATTTATTTC
Found at i:7438773 original size:13 final size:13
Alignment explanation
Indices: 7438755--7438779 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7438745 AGAAAAACTA
7438755 ATTTATTTTTTTC
1 ATTTATTTTTTTC
7438768 ATTTATTTTTTT
1 ATTTATTTTTTT
7438780 TTTAGAGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (13 bp):
ATTTATTTTTTTC
Found at i:7438957 original size:20 final size:20
Alignment explanation
Indices: 7438934--7438985 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
7438924 AAAGTTATGT
7438934 GAAAATTAATAACTTTATAA
1 GAAAATTAATAACTTTATAA
* *
7438954 G-AAATTCAGTAATTTTATAA
1 GAAAATT-AATAACTTTATAA
*
7438974 GAAATTTAATAA
1 GAAAATTAATAA
7438986 AATTTAAGAG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 5 0.19
20 17 0.65
21 4 0.15
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.37
Consensus pattern (20 bp):
GAAAATTAATAACTTTATAA
Found at i:7440347 original size:19 final size:20
Alignment explanation
Indices: 7440310--7440347 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7440300 ACTAAGAGAT
7440310 TCAATAATTTTATAAGAAAA
1 TCAATAATTTTATAAGAAAA
*
7440330 TCAATCATTTTA-AAGAAA
1 TCAATAATTTTATAAGAAA
7440348 TTTAATAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (20 bp):
TCAATAATTTTATAAGAAAA
Found at i:7440398 original size:20 final size:20
Alignment explanation
Indices: 7440375--7440417 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
7440365 TATTCATTAC
* *
7440375 TTTTATAATAACTTCAGTAA
1 TTTTATAAAAAATTCAGTAA
* *
7440395 TTTTGTAAAAAATTCGGTAA
1 TTTTATAAAAAATTCAGTAA
7440415 TTT
1 TTT
7440418 AAAATATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.07, G:0.09, T:0.47
Consensus pattern (20 bp):
TTTTATAAAAAATTCAGTAA
Found at i:7440543 original size:19 final size:18
Alignment explanation
Indices: 7440516--7440576 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 18
7440506 ATAGTTATTA
*
7440516 AAGAGATTTAGTAATTTTT
1 AAGAAATTTA-TAATTTTT
* *
7440535 AAGAAATTTATCATTTAT
1 AAGAAATTTATAATTTTT
7440553 AA-AAGATTTAATAATTTTGT
1 AAGAA-ATTT-ATAATTTT-T
7440573 AAGA
1 AAGA
7440577 GACTCGGTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
17 2 0.06
18 12 0.36
19 15 0.45
20 3 0.09
21 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (18 bp):
AAGAAATTTATAATTTTT
Found at i:7440903 original size:61 final size:62
Alignment explanation
Indices: 7440811--7440928 Score: 139
Period size: 61 Copynumber: 1.9 Consensus size: 62
7440801 TAGGTAAAGC
* ** * * *
7440811 TTAGTAATTTTGTAAGAGATTCAATGGTTTTGTAAGAAGTTCAGTAATTCTTTAAAAGAAGT
1 TTAGTAATTTTGCAAGAGATTCAATAATTTTGTAAGAAATTCAATAATTCTGTAAAAGAAGT
* * * *
7440873 TTAGTAATTTT-CAGGAGATTCAGTAATTTTGTGAGAAATTTAATAATTCTGTAAAA
1 TTAGTAATTTTGCAAGAGATTCAATAATTTTGTAAGAAATTCAATAATTCTGTAAAA
7440929 AAAATTAATA
Statistics
Matches: 46, Mismatches: 10, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
61 35 0.76
62 11 0.24
ACGTcount: A:0.36, C:0.05, G:0.18, T:0.41
Consensus pattern (62 bp):
TTAGTAATTTTGCAAGAGATTCAATAATTTTGTAAGAAATTCAATAATTCTGTAAAAGAAGT
Found at i:7457190 original size:15 final size:15
Alignment explanation
Indices: 7457167--7457201 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7457157 TGTCATTGAA
*
7457167 GAACCCGTTCGTAAT
1 GAACCCGTTCCTAAT
*
7457182 GAACTCGTTCCTAAT
1 GAACCCGTTCCTAAT
7457197 GAACC
1 GAACC
7457202 AGTAGGGAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (15 bp):
GAACCCGTTCCTAAT
Found at i:7462274 original size:342 final size:341
Alignment explanation
Indices: 7461595--7462281 Score: 1034
Period size: 342 Copynumber: 2.0 Consensus size: 341
7461585 CTAGAAATGC
* * *
7461595 ATGGTCATGCTCAAATAAGTTGATATGAGATATCACACTTATTTTTTTTTTATAGTTTACTCAGA
1 ATGGTCATGCTCAAATAAGTTGATATGAGATATCACACTTATTTGTTTATTATAGTCTACTCAGA
* * * *
7461660 ATATTAAGAAATATGAGATTGGACTATACAAGGGTGACTATGCTATGACTTGTGTCCAATTTAGA
66 ATATCAAGAAATATGAGACTGGACTATACAAGGGTGACTATACCATGACTTGTGTCCAATTTAGA
* * **
7461725 TATAAAGGATAAAATGATATAATACATGAAAAGTTTATCACAGAAAGGTTATGCCAAATCATGAC
131 TATAAAGGATAAAATGATATAATAAATGAAAAGCTTATCACAGAAAGGTTATGCCAAATCACAAC
* *
7461790 TTCTTGTAACTTGAGTAGCAATGATGCATTGCTAGACGCCACTCATTGCTTGTAACATTAGAAAT
196 TTCTTGTAACTTGAGTAGCAATGATGCATTGCTAGACGCCACGCATTGCTTGAAACATTAGAAAT
* * * *
7461855 GTTCTAGTTTTACTACCAACATTATAAGAACCTACAAGGCCACACCCTATGGTTAAAGCGAACAG
261 GTTCTAGTATTACTACCAACATTACAAGAACCTACAAGACCACACCCTATGGTTAAAGAGAACAG
*
7461920 ACTTCACACCAATATA
326 ACTTCACACCAATAGA
* *
7461936 ATGGTCATGCTCAAATAAGTTGATATGAGATATCACACTTATTTGTTTATTGTAGTCTATTCAGA
1 ATGGTCATGCTCAAATAAGTTGATATGAGATATCACACTTATTTGTTTATTATAGTCTACTCAGA
**
7462001 ATATCAAGAAATATGAGACTGGACTATACAATTGTGACTATACCATGACTTGTGTCCAATTTAGA
66 ATATCAAGAAATATGAGACTGGACTATACAAGGGTGACTATACCATGACTTGTGTCCAATTTAGA
* * * * *
7462066 TATAAATGATAAAATGATATAATAAAATGAAATA-CTTATTAGAGAAAGGTTATGTCGAATCACA
131 TATAAAGGATAAAATGATATAAT-AAATGAAA-AGCTTATCACAGAAAGGTTATGCCAAATCACA
* *
7462130 ACTTCTTGTAACTTGGGTAGCAATGATGTATTGCTAGACGCCACGCATTGCTTGAAACATTAGAA
194 ACTTCTTGTAACTTGAGTAGCAATGATGCATTGCTAGACGCCACGCATTGCTTGAAACATTAGAA
** * * * *
7462195 ATGTTCTAGTATTACTACCAATGTTACAGGAACCTACAAGATCACACCTTATGGTTAAAGAGAAT
259 ATGTTCTAGTATTACTACCAACATTACAAGAACCTACAAGACCACACCCTATGGTTAAAGAGAAC
7462260 AGACTTCACACCAATAGA
324 AGACTTCACACCAATAGA
7462278 ATGG
1 ATGG
7462282 GAGTATGTCA
Statistics
Matches: 309, Mismatches: 35, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
341 141 0.46
342 167 0.54
343 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (341 bp):
ATGGTCATGCTCAAATAAGTTGATATGAGATATCACACTTATTTGTTTATTATAGTCTACTCAGA
ATATCAAGAAATATGAGACTGGACTATACAAGGGTGACTATACCATGACTTGTGTCCAATTTAGA
TATAAAGGATAAAATGATATAATAAATGAAAAGCTTATCACAGAAAGGTTATGCCAAATCACAAC
TTCTTGTAACTTGAGTAGCAATGATGCATTGCTAGACGCCACGCATTGCTTGAAACATTAGAAAT
GTTCTAGTATTACTACCAACATTACAAGAACCTACAAGACCACACCCTATGGTTAAAGAGAACAG
ACTTCACACCAATAGA
Found at i:7464964 original size:23 final size:23
Alignment explanation
Indices: 7464938--7465036 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
7464928 ATAAGTGCAA
7464938 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
**
7464961 CACTCTTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
7464984 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
7465007 CACTGAAACGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
7465030 CACTGAT
1 CACTGAT
7465037 CAATAACACT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 69 1.00
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:7468715 original size:57 final size:57
Alignment explanation
Indices: 7468590--7468697 Score: 207
Period size: 57 Copynumber: 1.9 Consensus size: 57
7468580 AGAGTTTTAG
*
7468590 GTTAATTAATCATACCTCCACTTGCTAATCCCCCACAGGAGGATTAGTTGCAAAATA
1 GTTAATTAATCATACCTCCACTCGCTAATCCCCCACAGGAGGATTAGTTGCAAAATA
7468647 GTTAATTAATCATACCTCCACTCGCTAATCCCCCACAGGAGGATTAGTTGC
1 GTTAATTAATCATACCTCCACTCGCTAATCCCCCACAGGAGGATTAGTTGC
7468698 TCATGGATCT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.28
Consensus pattern (57 bp):
GTTAATTAATCATACCTCCACTCGCTAATCCCCCACAGGAGGATTAGTTGCAAAATA
Found at i:7470574 original size:17 final size:17
Alignment explanation
Indices: 7470544--7470586 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
7470534 ACTATCAGCA
*
7470544 GTTA-AATAATTTGACT
1 GTTAGAATAAGTTGACT
7470560 GTTAGAATAAGTTGACT
1 GTTAGAATAAGTTGACT
7470577 GTTAGAATAA
1 GTTAGAATAA
7470587 ATATCCATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
16 4 0.16
17 21 0.84
ACGTcount: A:0.40, C:0.05, G:0.19, T:0.37
Consensus pattern (17 bp):
GTTAGAATAAGTTGACT
Found at i:7476868 original size:60 final size:60
Alignment explanation
Indices: 7476787--7476910 Score: 169
Period size: 60 Copynumber: 2.1 Consensus size: 60
7476777 TGAGTATTCC
* * * * *
7476787 AAGG-ATCGAACCCCAATGAGTCGGCGATTTAATTATTCATTCTCGACAAACATGCAATG
1 AAGGAATCAAACCCAAAGGAGTCAGCGATTTAATGATTCATTCTCGACAAACATGCAATG
* * *
7476846 AAGGAATCAAACCCAAAGGAGTCAGCGATTTAATGATTCCTTCTCGACAAGCATGGAATG
1 AAGGAATCAAACCCAAAGGAGTCAGCGATTTAATGATTCATTCTCGACAAACATGCAATG
7476906 AAGGA
1 AAGGA
7476911 GTATAACTAG
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
59 4 0.07
60 52 0.93
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (60 bp):
AAGGAATCAAACCCAAAGGAGTCAGCGATTTAATGATTCATTCTCGACAAACATGCAATG
Found at i:7479242 original size:31 final size:32
Alignment explanation
Indices: 7479189--7479248 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 32
7479179 AACAGTCCAT
7479189 TGACTTAAAATAAAAACTTTCAAATAGTTTAG
1 TGACTTAAAATAAAAACTTTCAAATAGTTTAG
* *
7479221 TGACTT-AAATGAATACTTTCAAATAGTT
1 TGACTTAAAATAAAAACTTTCAAATAGTT
7479249 CAATAACCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 20 0.77
32 6 0.23
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.37
Consensus pattern (32 bp):
TGACTTAAAATAAAAACTTTCAAATAGTTTAG
Found at i:7498816 original size:14 final size:13
Alignment explanation
Indices: 7498768--7498817 Score: 52
Period size: 12 Copynumber: 4.0 Consensus size: 13
7498758 ACTGGTCATA
7498768 GAGAGA-ATTGAG
1 GAGAGATATTGAG
* *
7498780 GAGGGATATT-TG
1 GAGAGATATTGAG
7498792 GAGAGAT-TTGAG
1 GAGAGATATTGAG
7498804 GAGAGAATATTGAG
1 GAGAG-ATATTGAG
7498818 ATTTGGGGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
11 2 0.07
12 18 0.60
13 5 0.17
14 5 0.17
ACGTcount: A:0.36, C:0.00, G:0.40, T:0.24
Consensus pattern (13 bp):
GAGAGATATTGAG
Found at i:7499965 original size:27 final size:27
Alignment explanation
Indices: 7499934--7500160 Score: 292
Period size: 27 Copynumber: 8.4 Consensus size: 27
7499924 CCCTAAAATA
* * *
7499934 GGTAAAATAACCAAAATATCCCTATAG
1 GGTAAAATGACCAAAATACCCCCATAG
* * *
7499961 GGTAAAATGACCTAAATACCCCAATAA
1 GGTAAAATGACCAAAATACCCCCATAG
***
7499988 GGTAAAATGATTGAAATACCCCCATAG
1 GGTAAAATGACCAAAATACCCCCATAG
* *
7500015 GATAAAATGACTAAAATACCCCCATAG
1 GGTAAAATGACCAAAATACCCCCATAG
7500042 GGTAAAATGACCAAAATACCCCCATAG
1 GGTAAAATGACCAAAATACCCCCATAG
* *
7500069 GGTAAAATGATCAAAATACCCCTATAG
1 GGTAAAATGACCAAAATACCCCCATAG
* *
7500096 GGTAAAATTACCAAAATACCCTCATAG
1 GGTAAAATGACCAAAATACCCCCATAG
* *
7500123 GGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCAAAATACCCCCATAG
*
7500150 AGTAAAATGAC
1 GGTAAAATGAC
7500161 TATTATACCC
Statistics
Matches: 173, Mismatches: 27, Indels: 0
0.87 0.14 0.00
Matches are distributed among these distances:
27 173 1.00
ACGTcount: A:0.45, C:0.21, G:0.14, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCAAAATACCCCCATAG
Found at i:7506276 original size:51 final size:50
Alignment explanation
Indices: 7506217--7506409 Score: 210
Period size: 51 Copynumber: 3.8 Consensus size: 50
7506207 GATCAATTCT
* *
7506217 ATCCGGTACACATAGTAGCCTACATTGAGTACTACACATGTGACTAATA-CC
1 ATCCGGTACACATAGTAGCCTGCATT-AGTACTACACATGTGACCAA-AGCC
* * *
7506268 ATCCGGTACACGTAGTAGCCTGCATATAGTACTACACACGTGACCAAAGCT
1 ATCCGGTACACATAGTAGCCTGCAT-TAGTACTACACATGTGACCAAAGCC
*
7506319 ATCCGGTACACATAGTAGCCTGCATTTAGTACTACACATGTGACCATAA-CT
1 ATCCGGTACACATAGTAGCCTGCA-TTAGTACTACACATGTGACCA-AAGCC
*** * * *
7506370 ATCTTATACTCATAGTAGCCTACACATAGTACTACACATG
1 ATCCGGTACACATAGTAGCCTGCA-TTAGTACTACACATG
7506410 AGTTCTCATG
Statistics
Matches: 124, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
50 1 0.01
51 119 0.96
52 4 0.03
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (50 bp):
ATCCGGTACACATAGTAGCCTGCATTAGTACTACACATGTGACCAAAGCC
Found at i:7506399 original size:102 final size:102
Alignment explanation
Indices: 7506215--7506407 Score: 271
Period size: 102 Copynumber: 1.9 Consensus size: 102
7506205 ATGATCAATT
* * *
7506215 CTATCCGGTACACATAGTAGCCTACATTGAGTACTACACATGTGACTAATACCATCCGGTACACG
1 CTATCCGGTACACATAGTAGCCTACATTGAGTACTACACATGTGACCAATACCATCCGATACACA
* *
7506280 TAGTAGCCTGCATATAGTACTACACACGTGACCAAAG
66 TAGTAGCCTACACATAGTACTACACACGTGACCAAAG
* * * ** *
7506317 CTATCCGGTACACATAGTAGCCTGCATTTAGTACTACACATGTGACC-ATAACTATCTTATACTC
1 CTATCCGGTACACATAGTAGCCTACATTGAGTACTACACATGTGACCAAT-ACCATCCGATACAC
7506381 ATAGTAGCCTACACATAGTACTACACA
65 ATAGTAGCCTACACATAGTACTACACA
7506408 TGAGTTCTCA
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
101 2 0.03
102 77 0.97
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (102 bp):
CTATCCGGTACACATAGTAGCCTACATTGAGTACTACACATGTGACCAATACCATCCGATACACA
TAGTAGCCTACACATAGTACTACACACGTGACCAAAG
Found at i:7507097 original size:45 final size:45
Alignment explanation
Indices: 7507041--7507131 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
7507031 TCTATAAAAC
7507041 ATCAAAACACATGCATTTCATCCATGTGTAAATTTTTAAACACAA
1 ATCAAAACACATGCATTTCATCCATGTGTAAATTTTTAAACACAA
7507086 ATCAAAACACATGCATTTCATCCATGTGTAAATTTTTAAACACAA
1 ATCAAAACACATGCATTTCATCCATGTGTAAATTTTTAAACACAA
7507131 A
1 A
7507132 CCCTAGTTCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.31
Consensus pattern (45 bp):
ATCAAAACACATGCATTTCATCCATGTGTAAATTTTTAAACACAA
Found at i:7512921 original size:51 final size:51
Alignment explanation
Indices: 7512830--7513029 Score: 235
Period size: 51 Copynumber: 3.9 Consensus size: 51
7512820 CCCTTATGAT
* *
7512830 CAATGCTATCCGGTACACATAATAGCCTACAC-TGAGTACTACACATGTGAC
1 CAATACTATCCGGTACACATAGTAGCCTACACAT-AGTACTACACATGTGAC
* * * *
7512881 CAATACCATCCGGTACACGTAGTAGCCTGCACATAATACTACACATGTGAC
1 CAATACTATCCGGTACACATAGTAGCCTACACATAGTACTACACATGTGAC
* * *
7512932 CAA-AGCTATCCGGTACACATAGTACCCAACACTTAGTACTACACATGTGAC
1 CAATA-CTATCCGGTACACATAGTAGCCTACACATAGTACTACACATGTGAC
*** *
7512983 C-ATAACTATCTTATACTCATAGTAGCCTACACATAGTACTACACATG
1 CAAT-ACTATCCGGTACACATAGTAGCCTACACATAGTACTACACATG
7513030 AGTTCTCATG
Statistics
Matches: 125, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
50 2 0.02
51 121 0.97
52 2 0.02
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (51 bp):
CAATACTATCCGGTACACATAGTAGCCTACACATAGTACTACACATGTGAC
Found at i:7512983 original size:102 final size:102
Alignment explanation
Indices: 7512834--7513029 Score: 268
Period size: 102 Copynumber: 1.9 Consensus size: 102
7512824 TATGATCAAT
* * *
7512834 GCTATCCGGTACACATAATAGCCTACACTGAGTACTACACATGTGACCA-ATACCATCCGGTACA
1 GCTATCCGGTACACATAATACCCAACACTGAGTACTACACATGTGACCATA-ACCATCCGATACA
* *
7512898 CGTAGTAGCCTGCACATAATACTACACATGTGACCAAA
65 CATAGTAGCCTACACATAATACTACACATGTGACCAAA
* * * ** *
7512936 GCTATCCGGTACACATAGTACCCAACACTTAGTACTACACATGTGACCATAACTATCTTATACTC
1 GCTATCCGGTACACATAATACCCAACACTGAGTACTACACATGTGACCATAACCATCCGATACAC
*
7513001 ATAGTAGCCTACACATAGTACTACACATG
66 ATAGTAGCCTACACATAATACTACACATG
7513030 AGTTCTCATG
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
102 80 0.99
103 1 0.01
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (102 bp):
GCTATCCGGTACACATAATACCCAACACTGAGTACTACACATGTGACCATAACCATCCGATACAC
ATAGTAGCCTACACATAATACTACACATGTGACCAAA
Found at i:7516189 original size:13 final size:13
Alignment explanation
Indices: 7516167--7516200 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
7516157 GGCCCAAACT
7516167 AAATAATAAATACA
1 AAATAATAAATA-A
7516181 AAA-AATAAATAA
1 AAATAATAAATAA
7516193 AAATAATA
1 AAATAATA
7516201 GTCCAACGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.21
13 12 0.63
14 3 0.16
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (13 bp):
AAATAATAAATAA
Found at i:7519468 original size:20 final size:20
Alignment explanation
Indices: 7519443--7519484 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
7519433 GGTCTTAGTG
7519443 TTAACACGAGCCAGAGGGAA
1 TTAACACGAGCCAGAGGGAA
7519463 TTAACACGAGCCAGAGGGAA
1 TTAACACGAGCCAGAGGGAA
7519483 TT
1 TT
7519485 TTGGTCTACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.19, G:0.29, T:0.14
Consensus pattern (20 bp):
TTAACACGAGCCAGAGGGAA
Found at i:7526957 original size:31 final size:32
Alignment explanation
Indices: 7526919--7526978 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 32
7526909 GTGGTTATTG
7526919 AACTATTTGAAAGTATTCA-TTTAAGTCACTA
1 AACTATTTGAAAGTATTCATTTTAAGTCACTA
* *
7526950 AACTATTTGAAAGTTTTTATTTTAAGTCA
1 AACTATTTGAAAGTATTCATTTTAAGTCA
7526979 ATGGACTGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 17 0.65
32 9 0.35
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.43
Consensus pattern (32 bp):
AACTATTTGAAAGTATTCATTTTAAGTCACTA
Found at i:7528416 original size:25 final size:25
Alignment explanation
Indices: 7528378--7528442 Score: 105
Period size: 25 Copynumber: 2.6 Consensus size: 25
7528368 AGGAGGAGAG
7528378 CTTTAGTTTAGGTTTTCTTTCATCT
1 CTTTAGTTTAGGTTTTCTTTCATCT
*
7528403 CTTTAGTTTTGGTTTTCTTTCATCT
1 CTTTAGTTTAGGTTTTCTTTCATCT
*
7528428 CTTTAGCTTA-GTTTT
1 CTTTAGTTTAGGTTTT
7528443 AGGGTTTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
24 5 0.14
25 32 0.86
ACGTcount: A:0.11, C:0.15, G:0.12, T:0.62
Consensus pattern (25 bp):
CTTTAGTTTAGGTTTTCTTTCATCT
Found at i:7529329 original size:60 final size:59
Alignment explanation
Indices: 7529236--7529359 Score: 194
Period size: 60 Copynumber: 2.1 Consensus size: 59
7529226 CTAGTTAGAC
*
7529236 TCCTTCATTCCATGCTTGTCGAGAAGGAATCATTAAATCGTCAACTCCTTTGGGTTTGA
1 TCCTTCATTCCATGCTTGTCGAGAAGGAATCATTAAATCGTCAACTCCTTTGGGTTCGA
* * * *
7529295 TTCCTTCATTGCATGCTTGTCGAGAATGAATCATTAAATTGTCGACTCCTTTGGGTTCGA
1 -TCCTTCATTCCATGCTTGTCGAGAAGGAATCATTAAATCGTCAACTCCTTTGGGTTCGA
7529355 TCCTT
1 TCCTT
7529360 GGAATACTCA
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
59 5 0.08
60 54 0.92
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.38
Consensus pattern (59 bp):
TCCTTCATTCCATGCTTGTCGAGAAGGAATCATTAAATCGTCAACTCCTTTGGGTTCGA
Found at i:7537882 original size:20 final size:18
Alignment explanation
Indices: 7537857--7537919 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
7537847 CTTATGTTAA
7537857 TTTCAAATCGTGTCATTCAT
1 TTTCAAATCGT-T-ATTCAT
* *
7537877 TTTCAAAACATTATTCAT
1 TTTCAAATCGTTATTCAT
* * *
7537895 TTACAAATCGCTATTCAA
1 TTTCAAATCGTTATTCAT
7537913 TTTCAAA
1 TTTCAAA
7537920 ACATTTTTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
18 25 0.71
19 1 0.03
20 9 0.26
ACGTcount: A:0.35, C:0.19, G:0.05, T:0.41
Consensus pattern (18 bp):
TTTCAAATCGTTATTCAT
Found at i:7541378 original size:44 final size:44
Alignment explanation
Indices: 7541330--7541416 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
7541320 TATCTCAAGG
*
7541330 TCCATGTTTATAACATGGCAATTAAGGAAGAATTGACAGAAAAT
1 TCCATGTTTATAACATGGCAATTAAGAAAGAATTGACAGAAAAT
*
7541374 TCCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAA
1 TCCATGTTTATAACATGGCAATTAAGAAAGAATTGACAGAAAA
7541417 GACCATGGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.44, C:0.11, G:0.18, T:0.26
Consensus pattern (44 bp):
TCCATGTTTATAACATGGCAATTAAGAAAGAATTGACAGAAAAT
Found at i:7541423 original size:44 final size:44
Alignment explanation
Indices: 7541331--7541437 Score: 151
Period size: 44 Copynumber: 2.4 Consensus size: 44
7541321 ATCTCAAGGT
* **
7541331 CCATGTTTATAACATGGCAATTAAGGAAGAATTGACAGAAAATT
1 CCATGTTTATAACATGGCAATTAAGAAAGAATTGACAGAAAAGA
*
7541375 CCATGTTTATAACATGGCAATTAAGAAAGAATTGACGGAAAAGA
1 CCATGTTTATAACATGGCAATTAAGAAAGAATTGACAGAAAAGA
* * *
7541419 CCATGGTTAGACCATGGCA
1 CCATGTTTATAACATGGCA
7541438 GTAAGTGTGC
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (44 bp):
CCATGTTTATAACATGGCAATTAAGAAAGAATTGACAGAAAAGA
Found at i:7541620 original size:47 final size:47
Alignment explanation
Indices: 7541444--7541633 Score: 211
Period size: 53 Copynumber: 3.9 Consensus size: 47
7541434 GGCAGTAAGT
* *
7541444 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACCGAGGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCAC--ACAGA-GA
** *
7541494 GTGTTAGTGTAAGACCATGTCTGGGACATGATGGCATTGGCACGGACAGAGAA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGA---CATCGGCAC--ACAGAG-A
* * *
7541547 GAGTCAGTGTAAGACCATGTCTGGGACATGACATCGGCTCA-AGATGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCACACAGA-GA
7541594 GTGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCAC
1 GTGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCAC
7541634 CGATATGTGA
Statistics
Matches: 122, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
47 41 0.34
48 2 0.02
50 35 0.29
52 1 0.01
53 43 0.35
ACGTcount: A:0.27, C:0.21, G:0.32, T:0.20
Consensus pattern (47 bp):
GTGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCACACAGAGA
Found at i:7548154 original size:25 final size:26
Alignment explanation
Indices: 7548124--7548181 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 26
7548114 AGACAAAATA
*
7548124 TAATCCTAACTTCTTAACTTAAG-TC
1 TAATCCTAACTTCTAAACTTAAGTTC
* *
7548149 TAATCCAAATTTCTAAACTTAAGTTC
1 TAATCCTAACTTCTAAACTTAAGTTC
7548175 TAATCCT
1 TAATCCT
7548182 GGTCTAGTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 20 0.71
26 8 0.29
ACGTcount: A:0.34, C:0.22, G:0.03, T:0.40
Consensus pattern (26 bp):
TAATCCTAACTTCTAAACTTAAGTTC
Found at i:7549946 original size:22 final size:22
Alignment explanation
Indices: 7549898--7549943 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
7549888 TTTGTATGGC
*
7549898 ATTATAAGCATCATAATAATCT
1 ATTATAAGAATCATAATAATCT
7549920 ATTATAAGAAT-ATATATAAT-T
1 ATTATAAGAATCATA-ATAATCT
7549941 ATT
1 ATT
7549944 TATTTGTCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (22 bp):
ATTATAAGAATCATAATAATCT
Found at i:7556692 original size:13 final size:13
Alignment explanation
Indices: 7556674--7556698 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7556664 GTCAATTTGA
7556674 TATTACTTATCCG
1 TATTACTTATCCG
7556687 TATTACTTATCC
1 TATTACTTATCC
7556699 ATGTAGAGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.04, T:0.48
Consensus pattern (13 bp):
TATTACTTATCCG
Found at i:7559222 original size:16 final size:16
Alignment explanation
Indices: 7559201--7559238 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
7559191 ACACTATTTA
7559201 TTACTTATTTATGATT
1 TTACTTATTTATGATT
7559217 TTACTTATTTATGATT
1 TTACTTATTTATGATT
7559233 TTACTT
1 TTACTT
7559239 TTATTTGGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.24, C:0.08, G:0.05, T:0.63
Consensus pattern (16 bp):
TTACTTATTTATGATT
Found at i:7559456 original size:18 final size:18
Alignment explanation
Indices: 7559422--7559470 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
7559412 CAATAAAAAG
7559422 AACGTTTGGAAATTGAAT
1 AACGTTTGGAAATTGAAT
*
7559440 AACGATTTGTAAA-TGAAT
1 AACG-TTTGGAAATTGAAT
*
7559458 AATGTTTTGGAAA
1 AACG-TTTGGAAA
7559471 CGAACGACAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 19 0.73
19 7 0.27
ACGTcount: A:0.41, C:0.04, G:0.20, T:0.35
Consensus pattern (18 bp):
AACGTTTGGAAATTGAAT
Found at i:7559690 original size:10 final size:11
Alignment explanation
Indices: 7559636--7559687 Score: 52
Period size: 12 Copynumber: 4.5 Consensus size: 11
7559626 CCCCTTTCCC
7559636 CTTTTCATTTT
1 CTTTTCATTTT
7559647 CTTTTACATTTT
1 CTTTT-CATTTT
* *
7559659 ATTATTCTTCTTT
1 CTT-TTCAT-TTT
7559672 CTTTTC-TTTT
1 CTTTTCATTTT
7559682 CTTTTC
1 CTTTTC
7559688 TTTATTTTGT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
10 9 0.26
11 6 0.17
12 13 0.37
13 7 0.20
ACGTcount: A:0.10, C:0.19, G:0.00, T:0.71
Consensus pattern (11 bp):
CTTTTCATTTT
Found at i:7565141 original size:63 final size:63
Alignment explanation
Indices: 7565042--7565321 Score: 221
Period size: 63 Copynumber: 4.5 Consensus size: 63
7565032 CGCATATGGT
* * * * *
7565042 CGTGTG-CTAGGCCGTGTGACTCATTGTTTTCTATTAAGAACCATATGGGCCAAGGACACGGG
1 CGTGTGTCCAGGCCGTGTGACTCACTGTTTGCCATTAAGAACCACATGGGCCAAGGACACGGG
* * ** * *
7565104 CGTGTGTCCAGGCTGTGTGACTTACTGTTTGCCATTAATG-ACCACATGGGCCTGGGACACAGA
1 CGTGTGTCCAGGCCGTGTGACTCACTGTTTGCCATTAA-GAACCACATGGGCCAAGGACACGGG
* * * * * * **
7565167 CGT-TCGCCCAGGCCATGTAAGTCACTGTTTTCCATTAA-AGACCACACGAACCAAGGACACGGG
1 CGTGT-GTCCAGGCCGTGTGACTCACTGTTTGCCATTAAGA-ACCACATGGGCCAAGGACACGGG
* * * * * * * *
7565230 CGTGCGTCCATGCCCTGTGACTCACTGTTTGCCATTATGGACCACACGAGCC-AGAGACACAGG
1 CGTGTGTCCAGGCCGTGTGACTCACTGTTTGCCATTAAGAACCACATGGGCCAAG-GACACGGG
* *
7565293 TGTGT-TCCAGGCCATGTGACTCACTGTTT
1 CGTGTGTCCAGGCCGTGTGACTCACTGTTT
7565322 ATAATTCAGG
Statistics
Matches: 170, Mismatches: 40, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
62 31 0.18
63 138 0.81
64 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (63 bp):
CGTGTGTCCAGGCCGTGTGACTCACTGTTTGCCATTAAGAACCACATGGGCCAAGGACACGGG
Found at i:7567805 original size:11 final size:11
Alignment explanation
Indices: 7567791--7567817 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7567781 CATTGTCGTG
7567791 ACGTCATCGCA
1 ACGTCATCGCA
7567802 ACGTCATCGCA
1 ACGTCATCGCA
7567813 ACGTC
1 ACGTC
7567818 GTCTGCAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.37, G:0.19, T:0.19
Consensus pattern (11 bp):
ACGTCATCGCA
Found at i:7573961 original size:21 final size:22
Alignment explanation
Indices: 7573936--7573976 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
7573926 TTTTCTATAG
7573936 TCTTTTCCA-TTAT-TTTTATTA
1 TCTTTT-CATTTATCTTTTATTA
7573957 TCTTTTCATTTATCTTTTAT
1 TCTTTTCATTTATCTTTTAT
7573977 GTTTGTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 2 0.11
21 10 0.56
22 6 0.33
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.68
Consensus pattern (22 bp):
TCTTTTCATTTATCTTTTATTA
Found at i:7576126 original size:45 final size:45
Alignment explanation
Indices: 7576071--7576216 Score: 138
Period size: 45 Copynumber: 3.3 Consensus size: 45
7576061 CACTGGGCTA
* *
7576071 TGGATACACAACAAAATTTTGTAAATAAAAACTGCCATTGGGTTG
1 TGGATGCACAACAAAATTTTGTAGATAAAAACTGCCATTGGGTTG
*** *
7576116 TGGATGCACAACAAAATTTAACAGATAAAATCTGCCACTT-GGTTG
1 TGGATGCACAACAAAATTTTGTAGATAAAAACTGCCA-TTGGGTTG
* * ** *
7576161 TGGATGCAGAAC---ATGTTTGTAGGTAAAAGTTGTCATTGGGTTG
1 TGGATGCACAACAAAAT-TTTGTAGATAAAAACTGCCATTGGGTTG
*
7576204 TGGATGTACAACA
1 TGGATGCACAACA
7576217 TATTTGCAGT
Statistics
Matches: 81, Mismatches: 16, Indels: 9
0.76 0.15 0.08
Matches are distributed among these distances:
42 4 0.05
43 28 0.35
45 47 0.58
46 2 0.02
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (45 bp):
TGGATGCACAACAAAATTTTGTAGATAAAAACTGCCATTGGGTTG
Found at i:7576372 original size:34 final size:34
Alignment explanation
Indices: 7576329--7576519 Score: 229
Period size: 34 Copynumber: 5.6 Consensus size: 34
7576319 GCAATATGAC
* *
7576329 ATGCTTATAATAAATCAATACGGTAGCAATTAAT
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
* * *
7576363 ATGCGTATAACAGATCTATACGGTAGCAATCAAT
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
** * *
7576397 ATGCTTATAACAGATCAATATAGTTGTAATTAAT
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
* *
7576431 ATGCTTATAACAGATCAATACGGTAGTAATTTAT
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
* * *
7576465 ATGCTTACAATAGATCAATATGGTAGCAATTAAT
1 ATGCTTATAACAGATCAATACGGTAGCAATTAAT
* * *
7576499 ATGCTTCTAAGAAATCAATAC
1 ATGCTTATAACAGATCAATAC
7576520 ATTTGCAAAA
Statistics
Matches: 131, Mismatches: 26, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 131 1.00
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.32
Consensus pattern (34 bp):
ATGCTTATAACAGATCAATACGGTAGCAATTAAT
Found at i:7576415 original size:19 final size:19
Alignment explanation
Indices: 7576391--7576450 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
7576381 TACGGTAGCA
7576391 ATCAATATGCTTATAACAG
1 ATCAATATGCTTATAACAG
*
7576410 ATCAATATAG-TTGT---A-
1 ATCAATAT-GCTTATAACAG
*
7576425 ATTAATATGCTTATAACAG
1 ATCAATATGCTTATAACAG
7576444 ATCAATA
1 ATCAATA
7576451 CGGTAGTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 12
0.66 0.09 0.26
Matches are distributed among these distances:
14 1 0.03
15 10 0.32
16 1 0.03
18 1 0.03
19 17 0.55
20 1 0.03
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.35
Consensus pattern (19 bp):
ATCAATATGCTTATAACAG
Found at i:7576467 original size:102 final size:102
Alignment explanation
Indices: 7576329--7576518 Score: 263
Period size: 102 Copynumber: 1.9 Consensus size: 102
7576319 GCAATATGAC
* * *
7576329 ATGCTTATAATAAATCAATACGGTAGCAATTAATATGCGTATAACAGATCTATACGGTAGCAATC
1 ATGCTTATAACAAATCAATACGGTAGCAATTAATATGCGTACAACAGATCAATACGGTAGCAATC
*
7576394 AATATGCTTATAACAGATCAATATAGTTGTAATTAAT
66 AATATGCTTATAACAAATCAATATAGTTGTAATTAAT
* * * * * * *
7576431 ATGCTTATAACAGATCAATACGGTAGTAATTTATATGCTTACAATAGATCAATATGGTAGCAATT
1 ATGCTTATAACAAATCAATACGGTAGCAATTAATATGCGTACAACAGATCAATACGGTAGCAATC
* *
7576496 AATATGCTTCTAAGAAATCAATA
66 AATATGCTTATAACAAATCAATA
7576519 CATTTGCAAA
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
102 75 1.00
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.33
Consensus pattern (102 bp):
ATGCTTATAACAAATCAATACGGTAGCAATTAATATGCGTACAACAGATCAATACGGTAGCAATC
AATATGCTTATAACAAATCAATATAGTTGTAATTAAT
Found at i:7581898 original size:40 final size:39
Alignment explanation
Indices: 7581843--7581981 Score: 188
Period size: 40 Copynumber: 3.5 Consensus size: 39
7581833 CGTTTGGACA
*
7581843 AAAAACGCCGCTATAGATCGAGCATTAGCGACACTTTTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGCGA-GCTTTTTG
*
7581883 AAAAACACCGCTATAGATCGAGCATTAGCGGAGCTTTTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGC-GAGCTTTTTG
* * * *
7581923 AAAAACGCCGCCATCGATCGACCATTAGCGGTGCTTTTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGC-GAGCTTTTTG
*
7581963 AAAAATGCCGCTATAGATC
1 AAAAACGCCGCTATAGATC
7581982 AAAAAGCGCC
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 86 0.98
41 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (39 bp):
AAAAACGCCGCTATAGATCGAGCATTAGCGAGCTTTTTG
Found at i:7582144 original size:40 final size:40
Alignment explanation
Indices: 7582033--7582182 Score: 165
Period size: 40 Copynumber: 3.8 Consensus size: 40
7582023 AGCTTTAGTG
* * * *
7582033 GCATTAGCGGCACTTTTTGAATAACGCCGCTACAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCAA
* * * *
7582073 GCATTAGTGGCTCTTCTTGAAAAGCGCCGCTATAGATCAA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCAA
* * * * *
7582113 GCATTAGCGACGCTTTTTGAAAAATGTCGCTATAGGTCTA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCAA
* *
7582153 CCATTAGCGGCGCGTTTTGAAAAACGCCGC
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGC
7582183 AAAAAAATTA
Statistics
Matches: 89, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCAA
Done.