Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62175169
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 981721 characters in sequence are not A, C, G, or T
File 28 of 202
Found at i:8112265 original size:39 final size:41
Alignment explanation
Indices: 8112163--8112265 Score: 151
Period size: 40 Copynumber: 2.6 Consensus size: 41
8112153 AAAATACTGG
8112163 TAAAAATCGAGCATTAGCGGCG-TTTTAAGAAAATCGCCAC
1 TAAAAATCGAGCATTAGCGGCGTTTTTAAGAAAATCGCCAC
* *
8112203 TAAAGATCGAGCATTAGCGGCGTTTTTCAA-AAAAT-GCCGC
1 TAAAAATCGAGCATTAGCGGCGTTTTT-AAGAAAATCGCCAC
8112243 TAAAAAT-GAGCATTAGCGGCGTT
1 TAAAAATCGAGCATTAGCGGCGTT
8112266 AACCAAAGCC
Statistics
Matches: 58, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
39 16 0.28
40 31 0.53
41 9 0.16
42 2 0.03
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.24
Consensus pattern (41 bp):
TAAAAATCGAGCATTAGCGGCGTTTTTAAGAAAATCGCCAC
Found at i:8112356 original size:41 final size:40
Alignment explanation
Indices: 8112299--8112420 Score: 145
Period size: 41 Copynumber: 2.9 Consensus size: 40
8112289 TTCTTACCTT
* * *
8112299 TGGGGGCTTTAGCGGCGTTTTCGTAAAAGCGCTGCTAATGC
1 TGGGGTCTTTAGCGGCGTTTT-GGAAAAGCGCCGCTAATGC
*
8112340 TGGGGTTTTTAGCGGCGTCTTTGGAAAAGCGCCGCTAATGC
1 TGGGGTCTTTAGCGGCGT-TTTGGAAAAGCGCCGCTAATGC
* *
8112381 TGGTGTCTTTAGCGGCGTTTTTGAGAAAGCACGCCGCTAA
1 TGGGGTCTTTAGCGGCGTTTTGGA-AAAG--CGCCGCTAA
8112421 AAATATTTTG
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
40 5 0.07
41 53 0.76
42 3 0.04
43 9 0.13
ACGTcount: A:0.18, C:0.20, G:0.33, T:0.30
Consensus pattern (40 bp):
TGGGGTCTTTAGCGGCGTTTTGGAAAAGCGCCGCTAATGC
Found at i:8115699 original size:24 final size:24
Alignment explanation
Indices: 8115667--8115720 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
8115657 GGGAAAAGTA
* *
8115667 AGTTC-TTTCTGTATGTGTTGAAC
1 AGTTCATTTCTGCATGTATTGAAC
* *
8115690 GGTTCATTTCTGCATGTATTTAAC
1 AGTTCATTTCTGCATGTATTGAAC
8115714 AGTTCAT
1 AGTTCAT
8115721 CTTTCATCAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 4 0.16
24 21 0.84
ACGTcount: A:0.20, C:0.15, G:0.19, T:0.46
Consensus pattern (24 bp):
AGTTCATTTCTGCATGTATTGAAC
Found at i:8116874 original size:22 final size:23
Alignment explanation
Indices: 8116842--8116891 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
8116832 ATTTAGAAAA
*
8116842 TAAAAACAT-AATATAATATTTAT
1 TAAAAACATAAATATAAT-TTGAT
8116865 TAAAAA-ATAAATATAATTTGAT
1 TAAAAACATAAATATAATTTGAT
8116887 TAAAA
1 TAAAA
8116892 TAAATTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 11 0.44
23 14 0.56
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (23 bp):
TAAAAACATAAATATAATTTGAT
Found at i:8116975 original size:43 final size:43
Alignment explanation
Indices: 8116914--8117050 Score: 222
Period size: 43 Copynumber: 3.2 Consensus size: 43
8116904 AAGTTATATT
*
8116914 TTTAGCGGCGTTTATGGGAAAAGCGCTGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCATGGTC
8116957 TTTAGCGGCGTTTGTGGGAAAAGCG-TCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCT-GCTAAAGGTCATGGTC
* * *
8117000 TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCATGGTC
8117043 TTTAGCGG
1 TTTAGCGG
8117051 TGTTATTTTC
Statistics
Matches: 88, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
42 1 0.01
43 87 0.99
ACGTcount: A:0.21, C:0.17, G:0.34, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCATGGTC
Found at i:8118133 original size:7 final size:7
Alignment explanation
Indices: 8118121--8118145 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8118111 AGTTGATTGC
8118121 TATTTAG
1 TATTTAG
8118128 TATTTAG
1 TATTTAG
8118135 TATTTAG
1 TATTTAG
8118142 TATT
1 TATT
8118146 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:8119314 original size:45 final size:45
Alignment explanation
Indices: 8119227--8119314 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
8119217 ATATTTTGAA
* *
8119227 TATTTTGATATTATTTTATGTAATAAAATAATAAATTTTTTGAGT
1 TATTTTGATATTATTTGATGTAATAAAATAAGAAATTTTTTGAGT
*
8119272 TATTTTGATATTATTTGATGTAATAAAAT-AGAAGTTTATTTGA
1 TATTTTGATATTATTTGATGTAATAAAATAAGAAATTT-TTTGA
8119315 TGTAATAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
44 6 0.15
45 33 0.85
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (45 bp):
TATTTTGATATTATTTGATGTAATAAAATAAGAAATTTTTTGAGT
Found at i:8119316 original size:25 final size:25
Alignment explanation
Indices: 8119282--8119339 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
8119272 TATTTTGATA
*
8119282 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAAT
8119307 TTATTTGATGTAATAAAATAGAAAT
1 TTATTTGATGTAATAAAATAGAAAT
*
8119332 TTTTTTGA
1 TTATTTGA
8119340 GTTATTTTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAAT
Found at i:8119318 original size:70 final size:70
Alignment explanation
Indices: 8119237--8119367 Score: 228
Period size: 70 Copynumber: 1.9 Consensus size: 70
8119227 TATTTTGATA
*
8119237 TTATTTTATGTAATAAAATA-ATAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAAT
1 TTATTTGATGTAATAAAATAGA-AAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAAT
8119301 AGAAGT
65 AGAAGT
*
8119307 TTATTTGATGTAATAAAATAGAAATTTTTTTGAGTTATTTTGATATTATTTGATGTAATAA
1 TTATTTGATGTAATAAAATAGAAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAA
8119368 CATGAGATTA
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
70 57 0.98
71 1 0.02
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (70 bp):
TTATTTGATGTAATAAAATAGAAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATA
GAAGT
Found at i:8122670 original size:30 final size:30
Alignment explanation
Indices: 8122634--8122690 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
8122624 CCGAGCCTTG
*
8122634 GGGCAAAAATGTAATTATGTAAAAGTTTAT
1 GGGCAAAAATGTAATTATGAAAAAGTTTAT
* *
8122664 GGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGCAAAAATGTAATTATGAAAAAGTT
8122691 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.21, T:0.33
Consensus pattern (30 bp):
GGGCAAAAATGTAATTATGAAAAAGTTTAT
Found at i:8125472 original size:125 final size:123
Alignment explanation
Indices: 8125225--8125597 Score: 514
Period size: 125 Copynumber: 3.0 Consensus size: 123
8125215 CAAACATGCT
* * * *
8125225 ACTGTAGCAAAAGCGCGTCCACGTGGGTGCAATTTCATAAATTCTTCTCATAAAGCATCATGGTA
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCATAAAGCATCAT-GTA
* *
8125290 GAAGCGATTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCTAGGACCA
65 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTC-AGGACCA
* * * * *
8125350 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTAGAAATTCTTCTGA-AATAGCATCCTGCT
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCATAA-AGCATCATG-T
* * * *
8125414 TGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTTTTTCAGGACCT
64 AGAAGCG-ATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCA
* *
8125475 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCATAAAGCATCTTGTAA
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCATAAAGCATCATGTAG
* *
8125540 AAGCGATTTTATACTATTTGCTCAGAAATGTCAACTCGAAATTATTTCTTCCAGGACC
66 AAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTTCAGGACC
8125598 TAAAAATCCT
Statistics
Matches: 219, Mismatches: 24, Indels: 11
0.86 0.09 0.04
Matches are distributed among these distances:
123 39 0.18
124 18 0.08
125 118 0.54
126 44 0.20
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (123 bp):
ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCATAAAGCATCATGTAG
AAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCA
Found at i:8139715 original size:12 final size:12
Alignment explanation
Indices: 8139698--8139745 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
8139688 ACTTAATCAC
8139698 TTTAATATTAAA
1 TTTAATATTAAA
*
8139710 TTTAAT-CTAAA
1 TTTAATATTAAA
*
8139721 TATT-AGATTAAA
1 T-TTAATATTAAA
8139733 TTTAATATTAAA
1 TTTAATATTAAA
8139745 T
1 T
8139746 ATTATTAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
11 8 0.28
12 21 0.72
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:8139732 original size:23 final size:24
Alignment explanation
Indices: 8139704--8139749 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
8139694 TCACTTTAAT
8139704 ATTAAATTTAAT-CTAAATATTAG
1 ATTAAATTTAATACTAAATATTAG
*
8139727 ATTAAATTTAATATTAAATATTA
1 ATTAAATTTAATACTAAATATTA
8139750 TTAAAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (24 bp):
ATTAAATTTAATACTAAATATTAG
Found at i:8139756 original size:23 final size:21
Alignment explanation
Indices: 8139703--8139754 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 21
8139693 ATCACTTTAA
8139703 TATTAAATTTAATCTAAATAT
1 TATTAAATTTAATCTAAATAT
*
8139724 TAGATTAAATTTAATATTAAATAT
1 T--ATTAAATTTAAT-CTAAATAT
8139748 TATTAAA
1 TATTAAA
8139755 ATAATAGAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 1 0.04
22 6 0.22
23 12 0.44
24 8 0.30
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (21 bp):
TATTAAATTTAATCTAAATAT
Found at i:8150610 original size:109 final size:106
Alignment explanation
Indices: 8150332--8150636 Score: 337
Period size: 109 Copynumber: 2.8 Consensus size: 106
8150322 CTAAATGAGG
* * * * *
8150332 CAATATTTAGCGTTTAGAAATTCGAGAAAACGTGCCCTAGTGTGCTGGGTTTCGATTTTCTCGTT
1 CAATATTTTGCGTTTGGAAATTCGAG-GAACGTG-CCTAATGTGCTGGGTTTCGATTTTCTCATT
* * * * *
8150397 CAACCAAATAACTAAGTATCCTTTTAAAATTTTTAAAATAAGG
64 CAACCAAATAGCCAAATATCCTTTAAAAATTTTTAAAATAAGA
* *
8150440 CAATGTTTT-CGTTTGGAAATTCGAGGAAACGCGCCTTAATGTGCTGGGTTTCGAATTTTTCTCA
1 CAATATTTTGCGTTTGGAAATTCGAGG-AACGTGCC-TAATGTGCTGGGTTTCG-A-TTTTCTCA
*
8150504 TTCAACCAAATAGCCAAATATCCTTTCAAAAAATTTTTCAAAGTAAGA
62 TTCAACCAAATAGCCAAATATCCTTT--AAAAATTTTT-AAAATAAGA
* *
8150552 CTATATTTTGCGTTTGGAAATTTGAGGAACGTGCACTAATGTG-TGGGGTTTCGA-TTTCTCATT
1 CAATATTTTGCGTTTGGAAATTCGAGGAACGTGC-CTAATGTGCT-GGGTTTCGATTTTCTCATT
* *
8150615 TAACCAAATAGTCAAATATCCT
64 CAACCAAATAGCCAAATATCCT
8150637 CTTGAATTTT
Statistics
Matches: 168, Mismatches: 19, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
106 2 0.01
107 36 0.21
108 8 0.05
109 59 0.35
111 11 0.07
112 35 0.21
113 17 0.10
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.35
Consensus pattern (106 bp):
CAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCTAATGTGCTGGGTTTCGATTTTCTCATTCA
ACCAAATAGCCAAATATCCTTTAAAAATTTTTAAAATAAGA
Found at i:8159210 original size:27 final size:27
Alignment explanation
Indices: 8159160--8159211 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
8159150 CATTCTGAAT
8159160 AAAAAAAGAAAAAATCAAATTAAATCA
1 AAAAAAAGAAAAAATCAAATTAAATCA
8159187 AAAACAAAGAAAATAAT-AAA-TAAAT
1 AAAA-AAAGAAAA-AATCAAATTAAAT
8159212 TCAGTCCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
27 9 0.39
28 11 0.48
29 3 0.13
ACGTcount: A:0.75, C:0.06, G:0.04, T:0.15
Consensus pattern (27 bp):
AAAAAAAGAAAAAATCAAATTAAATCA
Found at i:8160432 original size:2 final size:2
Alignment explanation
Indices: 8160427--8160451 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8160417 TCATTTATTC
8160427 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8160452 CCTATACATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8173287 original size:44 final size:43
Alignment explanation
Indices: 8173179--8173338 Score: 128
Period size: 44 Copynumber: 3.6 Consensus size: 43
8173169 AGTAAGCAGG
* * * *
8173179 TCTTATTCCCCTGAAGTTGCAGTGG-GACAGATCGAAGATGGCG-AA
1 TCTTATTTCCCTGAAGTTGCAGCGGAG-CAGATTGAA-A--CCGAAA
* * * *
8173224 TCTCATTTCCATGAGGTTGCAGTGGAGCAGATTGAAACCGATAA
1 TCTTATTTCCCTGAAGTTGCAGCGGAGCAGATTGAAACCGA-AA
* * **
8173268 TCTTATTTCCCTGAAGTTGCAGCGAAGCAGATTGAGTAAGC-AGG
1 TCTTATTTCCCTGAAGTTGCAGCGGAGCAGATTGA--AACCGAAA
8173312 TCTTATTTCCCTGAAGTTGCAGCGGAG
1 TCTTATTTCCCTGAAGTTGCAGCGGAG
8173339 TAGCCTGAGC
Statistics
Matches: 95, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
42 2 0.02
44 59 0.62
45 30 0.32
46 4 0.04
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (43 bp):
TCTTATTTCCCTGAAGTTGCAGCGGAGCAGATTGAAACCGAAA
Found at i:8181929 original size:39 final size:39
Alignment explanation
Indices: 8181875--8181953 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
8181865 AAGATAAAAA
*
8181875 ACTTAAATTTGAAAAATCATTTTTATTTAATTATAATAT
1 ACTTAAATTTCAAAAATCATTTTTATTTAATTATAATAT
8181914 ACTTAAATTTCAAAAATCATTTTTATTTAATTATAATAT
1 ACTTAAATTTCAAAAATCATTTTTATTTAATTATAATAT
8181953 A
1 A
8181954 TACTTTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.44, C:0.06, G:0.01, T:0.48
Consensus pattern (39 bp):
ACTTAAATTTCAAAAATCATTTTTATTTAATTATAATAT
Found at i:8184209 original size:26 final size:26
Alignment explanation
Indices: 8184161--8184221 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
8184151 TTTTACTCCA
* * *
8184161 GTAAAATTTTGATGATTTGACCCTAG
1 GTAAAATTTTAACGATTTGACCCCAG
*
8184187 GTAAAATTTTAACGATCTT-ACCCCCG
1 GTAAAATTTTAACGAT-TTGACCCCAG
8184213 GTAAAATTT
1 GTAAAATTT
8184222 CGAGAAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 28 0.93
27 2 0.07
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (26 bp):
GTAAAATTTTAACGATTTGACCCCAG
Found at i:8186023 original size:22 final size:22
Alignment explanation
Indices: 8185975--8186024 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
8185965 ATCACATTAC
8185975 ACATATATCACATAACATTTAA
1 ACATATATCACATAACATTTAA
*
8185997 GCATATATCACA-ATAC-TTATAA
1 ACATATATCACATA-ACATT-TAA
8186019 ACATAT
1 ACATAT
8186025 TTCTAGATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.48, C:0.18, G:0.02, T:0.32
Consensus pattern (22 bp):
ACATATATCACATAACATTTAA
Found at i:8188435 original size:37 final size:37
Alignment explanation
Indices: 8188384--8188454 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 37
8188374 ATGGGCATAC
* *
8188384 TCAAGTTATGACGGTCCGTTGGACTTGTCATCATGTT
1 TCAAGTTATGACGGTCCATTGAACTTGTCATCATGTT
* * *
8188421 TCAAGTTATTACGGTCTATTGAACTTGTCCTCAT
1 TCAAGTTATGACGGTCCATTGAACTTGTCATCAT
8188455 ACTTCAAATT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (37 bp):
TCAAGTTATGACGGTCCATTGAACTTGTCATCATGTT
Found at i:8188461 original size:37 final size:37
Alignment explanation
Indices: 8188379--8188461 Score: 96
Period size: 37 Copynumber: 2.3 Consensus size: 37
8188369 TAGCCATGGG
* *
8188379 CATAC-TCAAGTTATGACGGTCCGTTGGACTTGTCAT
1 CATACTTCAAGTTATGACGGTCCATTGAACTTGTCAT
** * * *
8188415 CATGTTTCAAGTTATTACGGTCTATTGAACTTGTCCT
1 CATACTTCAAGTTATGACGGTCCATTGAACTTGTCAT
8188452 CATACTTCAA
1 CATACTTCAA
8188462 ATTAAGACAA
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
36 3 0.08
37 34 0.92
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (37 bp):
CATACTTCAAGTTATGACGGTCCATTGAACTTGTCAT
Found at i:8188664 original size:42 final size:42
Alignment explanation
Indices: 8188586--8188667 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
8188576 GCAGGCATGA
* *
8188586 ATCTGTATCTATGAATCCATATATAAGAATATGTACTTATGT
1 ATCTGTATCTATGAATCCACATATAAGAATACGTACTTATGT
* * * *
8188628 ATCTGTATTTATGAATCCACATATATGATTCCGTACTTAT
1 ATCTGTATCTATGAATCCACATATAAGAATACGTACTTAT
8188668 AAATCCATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (42 bp):
ATCTGTATCTATGAATCCACATATAAGAATACGTACTTATGT
Found at i:8188667 original size:28 final size:28
Alignment explanation
Indices: 8188636--8188737 Score: 89
Period size: 28 Copynumber: 3.6 Consensus size: 28
8188626 GTATCTGTAT
* *
8188636 TTATGAATCCACATATATGATTCCGTAC
1 TTATAAATCCACATATATGAATCCGTAC
* *
8188664 TTATAAATCCATATATATGAATCTGTA-
1 TTATAAATCCACATATATGAATCCGTAC
** * * *
8188691 TCTAGGAGTCCGCATATATGAATCAGTAC
1 T-TATAAATCCACATATATGAATCCGTAC
* *
8188720 TTATAAATCAATATATAT
1 TTATAAATCCACATATAT
8188738 AATTTCGTAT
Statistics
Matches: 56, Mismatches: 16, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
27 1 0.02
28 54 0.96
29 1 0.02
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36
Consensus pattern (28 bp):
TTATAAATCCACATATATGAATCCGTAC
Found at i:8188688 original size:56 final size:56
Alignment explanation
Indices: 8188623--8188751 Score: 161
Period size: 56 Copynumber: 2.3 Consensus size: 56
8188613 AATATGTACT
* * * *
8188623 TATGTATCTGTATTTATGAATCCACATATATGATTCCGTACTTATAAATCCATATA
1 TATGAATCTGTATTTATGAATCCACATATATGAATCAGTACTTATAAATCAATATA
* * * *
8188679 TATGAATCTGTATCTAGGAGTCCGCATATATGAATCAGTACTTATAAATCAATATA
1 TATGAATCTGTATTTATGAATCCACATATATGAATCAGTACTTATAAATCAATATA
*
8188735 TAT-AATTTCGTATTTAT
1 TATGAATCT-GTATTTAT
8188752 AATTTTGCAT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
55 4 0.07
56 57 0.93
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (56 bp):
TATGAATCTGTATTTATGAATCCACATATATGAATCAGTACTTATAAATCAATATA
Found at i:8188751 original size:28 final size:28
Alignment explanation
Indices: 8188720--8188780 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
8188710 GAATCAGTAC
*
8188720 TTATAAATCAATATATATAATTTCGTAT
1 TTATAAATCAACATATATAATTTCGTAT
* *** *
8188748 TTATAATTTTGCATATATGATTTCGTAT
1 TTATAAATCAACATATATAATTTCGTAT
8188776 TTATA
1 TTATA
8188781 GTTCTGCATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.51
Consensus pattern (28 bp):
TTATAAATCAACATATATAATTTCGTAT
Found at i:8188752 original size:14 final size:14
Alignment explanation
Indices: 8188735--8188780 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
8188725 AATCAATATA
8188735 TATAATTTCGTATT
1 TATAATTTCGTATT
* * *
8188749 TATAATTTTGCATA
1 TATAATTTCGTATT
*
8188763 TATGATTTCGTATT
1 TATAATTTCGTATT
8188777 TATA
1 TATA
8188781 GTTCTGCATA
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.30, C:0.07, G:0.09, T:0.54
Consensus pattern (14 bp):
TATAATTTCGTATT
Found at i:8188780 original size:56 final size:56
Alignment explanation
Indices: 8188623--8188780 Score: 142
Period size: 56 Copynumber: 2.8 Consensus size: 56
8188613 AATATGTACT
* * * * *
8188623 TATGTATCTGTATTTATGAA-TCCACATATATGATTCCGTACTTATAAATCCATATA
1 TATGAATCTGTATCTA-GAAGTCCGCATATATGATTTCGTACTTATAAATCAATATA
* *
8188679 TATGAATCTGTATCTAGGAGTCCGCATATATGA-ATCAGTACTTATAAATCAATATA
1 TATGAATCTGTATCTAGAAGTCCGCATATATGATTTC-GTACTTATAAATCAATATA
* * * * ** *
8188735 TAT-AATTTCGTATTTATAATTTTGCATATATGATTTCGTATTTATA
1 TATGAATCT-GTATCTAGAAGTCCGCATATATGATTTCGTACTTATA
8188781 GTTCTGCATA
Statistics
Matches: 82, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
55 7 0.09
56 73 0.89
57 2 0.02
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (56 bp):
TATGAATCTGTATCTAGAAGTCCGCATATATGATTTCGTACTTATAAATCAATATA
Found at i:8188788 original size:28 final size:28
Alignment explanation
Indices: 8188732--8188797 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 28
8188722 ATAAATCAAT
* *
8188732 ATATATAATTTCGTATTTATAATTTTGC
1 ATATATGATTTCGTATTTATAATTCTGC
*
8188760 ATATATGATTTCGTATTTATAGTTCTGC
1 ATATATGATTTCGTATTTATAATTCTGC
*
8188788 ATATGTGATT
1 ATATATGATT
8188798 CTGCATCCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.29, C:0.08, G:0.12, T:0.52
Consensus pattern (28 bp):
ATATATGATTTCGTATTTATAATTCTGC
Found at i:8189985 original size:17 final size:17
Alignment explanation
Indices: 8189959--8189999 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
8189949 ATATATATAA
8189959 TTTATCATTT-TAAATAT
1 TTTATCATTTATAAA-AT
*
8189976 TTTATTATTTATAAAA-
1 TTTATCATTTATAAAAT
8189992 TTTATCAT
1 TTTATCAT
8190000 AAAAGCTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 7 0.33
17 10 0.48
18 4 0.19
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTATCATTTATAAAAT
Found at i:8193722 original size:21 final size:22
Alignment explanation
Indices: 8193695--8193740 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 22
8193685 AAAGTAAAAA
*
8193695 AAAAATTTGTTAAAATAATAGC
1 AAAATTTTGTTAAAATAATAGC
8193717 AAAATTTTTTGTTAAAATAATAGC
1 AAAA--TTTTGTTAAAATAATAGC
8193741 TTAACTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.19
24 17 0.81
ACGTcount: A:0.50, C:0.04, G:0.09, T:0.37
Consensus pattern (22 bp):
AAAATTTTGTTAAAATAATAGC
Found at i:8213984 original size:71 final size:71
Alignment explanation
Indices: 8213868--8214123 Score: 246
Period size: 71 Copynumber: 3.6 Consensus size: 71
8213858 ATTCGATTGT
* * * * * *
8213868 TGAGATCCAACATATGTTGCGGATTTTTGACAACTTGAGTAAGCAGCATCGAATTATATTTTACT
1 TGAGATCTAACATAAGTTGCGGATTCTCGACAGCTTGAGTGAGCAGCATCGAATTATATTTTACT
8213933 GATGAC
66 GATGAC
* * *
8213939 TGAGATCTAACATAAGTTGCGGGTTCTCAACAGCTTGAGTGAGCAGCATCGAATTAGATTTTAGC
1 TGAGATCTAACATAAGTTGCGGATTCTCGACAGCTTGAGTGAGCAGCATCGAATTATATTTTA-C
8214004 -GATGAC
65 TGATGAC
** * ** * * * *
8214010 TGAGAT-TCGGCATAAGCTGCATATTCTCGATAGCTTGAGTGAGCAACATCGAATTATACTTTAT
1 TGAGATCT-AACATAAGTTGCGGATTCTCGACAGCTTGAGTGAGCAGCATCGAATTATATTTTAC
*
8214074 TGATGGC
65 TGATGAC
* * * * ** *
8214081 TGAGATCTAGCACATGTTACGGATTAACGACAACTTGAGTGAG
1 TGAGATCTAACATAAGTTGCGGATTCTCGACAGCTTGAGTGAG
8214124 TAACATTGAA
Statistics
Matches: 148, Mismatches: 33, Indels: 8
0.78 0.17 0.04
Matches are distributed among these distances:
70 1 0.01
71 145 0.98
72 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.30
Consensus pattern (71 bp):
TGAGATCTAACATAAGTTGCGGATTCTCGACAGCTTGAGTGAGCAGCATCGAATTATATTTTACT
GATGAC
Found at i:8215562 original size:71 final size:71
Alignment explanation
Indices: 8215446--8215578 Score: 248
Period size: 71 Copynumber: 1.9 Consensus size: 71
8215436 AAGTTACCTA
* *
8215446 AGCATTTGTATCAATTCAACCTTTCCAAATCAACCATTTAAAATGCATTTAAAACAAAAAAACAT
1 AGCATTTGTATCAATTCAACCCTTCCAAATCAACCATTCAAAATGCATTTAAAACAAAAAAACAT
8215511 TCCATG
66 TCCATG
8215517 AGCATTTGTATCAATTCAACCCTTCCAAATCAACCATTCAAAATGCATTTAAAACAAAAAAA
1 AGCATTTGTATCAATTCAACCCTTCCAAATCAACCATTCAAAATGCATTTAAAACAAAAAAA
8215579 AAAATACCAT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 60 1.00
ACGTcount: A:0.45, C:0.22, G:0.05, T:0.28
Consensus pattern (71 bp):
AGCATTTGTATCAATTCAACCCTTCCAAATCAACCATTCAAAATGCATTTAAAACAAAAAAACAT
TCCATG
Found at i:8217380 original size:13 final size:13
Alignment explanation
Indices: 8217362--8217456 Score: 57
Period size: 13 Copynumber: 7.2 Consensus size: 13
8217352 TATCAATATC
*
8217362 CATATAAATATTT
1 CATATAAACATTT
* **
8217375 CATATAGACACAT
1 CATATAAACATTT
*
8217388 CATATAACCATTT
1 CATATAAACATTT
**
8217401 CATAT-GTCTATTTT
1 CATATAAAC-A-TTT
* *
8217415 CATAAAAATATTT
1 CATATAAACATTT
* *
8217428 CGTATAACCATTT
1 CATATAAACATTT
*
8217441 CATCTAAACATTT
1 CATATAAACATTT
8217454 CAT
1 CAT
8217457 TTTACCATTT
Statistics
Matches: 58, Mismatches: 21, Indels: 6
0.68 0.25 0.07
Matches are distributed among these distances:
12 1 0.02
13 49 0.84
14 8 0.14
ACGTcount: A:0.39, C:0.18, G:0.03, T:0.40
Consensus pattern (13 bp):
CATATAAACATTT
Found at i:8220409 original size:46 final size:46
Alignment explanation
Indices: 8220335--8220671 Score: 509
Period size: 46 Copynumber: 7.6 Consensus size: 46
8220325 TACGTATGAT
* *
8220335 CACTTATCAC-TTG-CCCCTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
8220379 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
8220425 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
8220471 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
8220517 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* *
8220563 CACTTATCACTTTGTCTCTTGATCAAATAA--GT-G-T-A-G----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
8220599 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* *
8220645 CACTTATCACTTTATCTCTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
8220672 AGTACTCAAA
Statistics
Matches: 270, Mismatches: 11, Indels: 22
0.89 0.04 0.07
Matches are distributed among these distances:
36 28 0.10
38 2 0.01
39 1 0.00
40 2 0.01
41 2 0.01
42 2 0.01
43 1 0.00
44 12 0.04
45 3 0.01
46 217 0.80
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
Found at i:8220604 original size:36 final size:36
Alignment explanation
Indices: 8220563--8220635 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
8220553 CTAAAGCTAC
*
8220563 CACTTATCACTTTGTCTCTTGATCAAATAAGTGTAG
1 CACTTATCACTTTGTCACTTGATCAAATAAGTGTAG
*
8220599 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTGTCACTTGATCAAATAAGTGTAG
8220635 C
1 C
8220636 TAAAGCTACC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (36 bp):
CACTTATCACTTTGTCACTTGATCAAATAAGTGTAG
Found at i:8220611 original size:82 final size:82
Alignment explanation
Indices: 8220517--8220669 Score: 297
Period size: 82 Copynumber: 1.9 Consensus size: 82
8220507 CTAAGGCTAA
*
8220517 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCTCT
8220582 TGATCAAATAAGTGTAG
66 TGATCAAATAAGTGTAG
8220599 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCTCT
8220664 TGATCA
66 TGATCA
8220670 GAAGTACTCA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 70 1.00
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (82 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCTCT
TGATCAAATAAGTGTAG
Found at i:8225755 original size:3 final size:3
Alignment explanation
Indices: 8225747--8225780 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
8225737 ACAATTTAAT
8225747 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
8225781 CATTTCTTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:8241764 original size:93 final size:93
Alignment explanation
Indices: 8241613--8241798 Score: 354
Period size: 93 Copynumber: 2.0 Consensus size: 93
8241603 GATACTCCCA
8241613 CTGATGAAGTTATTCATGTAGAATCTCAGGATAATGCGCCTGAGTCTAATTCGGAAGAGAATAGA
1 CTGATGAAGTTATTCATGTAGAATCTCAGGATAATGCGCCTGAGTCTAATTCGGAAGAGAATAGA
*
8241678 TATGTGTTGCCTCCTAGGAGTACTCGAG
66 TATGTGTTGCCTCCCAGGAGTACTCGAG
*
8241706 CTGATGAAGTTATTCATGTAGAATCTCAGGATAATGCGCCTGAGTCTAATTTGGAAGAGAATAGA
1 CTGATGAAGTTATTCATGTAGAATCTCAGGATAATGCGCCTGAGTCTAATTCGGAAGAGAATAGA
8241771 TATGTGTTGCCTCCCAGGAGTACTCGAG
66 TATGTGTTGCCTCCCAGGAGTACTCGAG
8241799 GTATTCCCCC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 91 1.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (93 bp):
CTGATGAAGTTATTCATGTAGAATCTCAGGATAATGCGCCTGAGTCTAATTCGGAAGAGAATAGA
TATGTGTTGCCTCCCAGGAGTACTCGAG
Found at i:8245771 original size:24 final size:24
Alignment explanation
Indices: 8245743--8245820 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 24
8245733 ATAAGATAAC
* * *
8245743 TTAAAATAATAATACCTAATAGCT
1 TTAAAACAATAATACATAATAGAT
* * *
8245767 TTAAAACAACAATACATAATAAAA
1 TTAAAACAATAATACATAATAGAT
*
8245791 TTAAAACAATTATACATAATAGAT
1 TTAAAACAATAATACATAATAGAT
8245815 TTAAAA
1 TTAAAA
8245821 GAATGTCCAT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.58, C:0.10, G:0.03, T:0.29
Consensus pattern (24 bp):
TTAAAACAATAATACATAATAGAT
Found at i:8254253 original size:98 final size:98
Alignment explanation
Indices: 8254123--8254317 Score: 354
Period size: 98 Copynumber: 2.0 Consensus size: 98
8254113 AAAAAAATAA
* * *
8254123 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATCGGGTGTGATTTC
8254188 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
*
8254221 TAAATGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATCGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATCGGGTGTGATTTC
8254286 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
8254318 AGTTTTATTG
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.29, C:0.11, G:0.24, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATCGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:8265827 original size:44 final size:42
Alignment explanation
Indices: 8265764--8266539 Score: 327
Period size: 45 Copynumber: 17.7 Consensus size: 42
8265754 AACCGCATCT
8265764 AGTCTTATCTCCTTGAAGTTGCAATGGAGCAGACTAAG-TAAGCA
1 AGTCTTATCTCC-TGAAGTTGC-ATGGAGCAGACTAAGAT-AGCA
* *
8265808 AGTCTTATCCTCCTAAAGTTGC-TGTGAGGCAGACTGAAGATGGCA
1 AGTCTTAT-CTCCTGAAGTTGCATG-GA-GCAGACT-AAGATAGCA
* * **
8265853 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGACCG-A
1 AGTCTTATCT-CCTGAAGTTGCA-TGGAGCAGACTAAGATAGCA
* * * * * * *
8265896 TAATCCTGTCTTCCTGAAGTTGCATTGGAGCGGATTAA-A-ACCTC
1 -AGTCTTATC-TCCTGAAGTTGCA-TGGAGCAGACTAAGATAGC-A
* *
8265940 AGATCTTATCTCTCTGAAGTTGCA-GAGAGCAGA-T-CGCAT--CT
1 AG-TCTTATCTC-CTGAAGTTGCATG-GAGCAGACTAAG-ATAGCA
*
8265981 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAGCA
1 AGTCTTATCT-CCTGAAGTTGCA-TGGAGCAGACTAAG-ATAGCA
* *
8266026 AGTCTTATCCTCCTGAATTTGCA-GTGAGGCAGACTGAAGATGGCA
1 AGTCTTAT-CTCCTGAAGTTGCATG-GA-GCAGACT-AAGATAGCA
* * *
8266071 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCATA-TA
1 AGTCTTATCT-CCTGAAGTTGCA-TGGAGCAGACT-AAG-ATAGCA
* * * * * *
8266116 ATTATATAT-TCCTGAAGTTGCATTGGAGCGGATTAA-A-ACCTC
1 AGTCT-TATCTCCTGAAGTTGCA-TGGAGCAGACTAAGATAGC-A
* *
8266158 AGATCTTATCTCTCTGAAGTTGCA-GAGAGCAGA-T-CGCAT--CT
1 AG-TCTTATCTC-CTGAAGTTGCATG-GAGCAGACTAAG-ATAGCA
* * *
8266199 AGTTTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAATCAAAGCA
1 AGTCTTATCT-CCTGAAGTTGCA-TGGAGCAGACTAA-GATAGCA
*
8266244 AGTCTTATCCTCCTGAAGTTGCA-GTGAGGCAGACTGAAGATGGCA
1 AGTCTTAT-CTCCTGAAGTTGCATG-GA-GCAGACT-AAGATAGCA
* *
8266289 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-A-AGCCGA
1 AGTCTTATCT-CCTGAAGTTGCA-TGGAGCAGACTAAGATAG-C-A
* * * * * *
8266332 TAATCCTATCTCCCTGAATTTGCATTGGAGCAGATTAA-A-ACCTC
1 -AGTCTTATCT-CCTGAAGTTGCA-TGGAGCAGACTAAGATAGC-A
* *
8266376 AGATCTTATCTCTCTGAAGTTGCA-GAGAGCAGA-T-CGCAT--CT
1 AG-TCTTATCTC-CTGAAGTTGCATG-GAGCAGACTAAG-ATAGCA
* * *
8266417 GGTCTTATCTCACTGAAGTTACAGTGGAGCAGACTAAGCAAAGCA
1 AGTCTTATCTC-CTGAAGTTGCA-TGGAGCAGACTAAG-ATAGCA
* * *
8266462 AGTCTTGTCCTCCTGAAGTTGCAGTGAAGCAGACTGAAGATGGCA
1 AGTCTTAT-CTCCTGAAGTTGCA-TGGAGCAGACT-AAGATAGCA
*
8266507 AATCTTATCCTCCTGAAGTTGCAGTGGAGCAGA
1 AGTCTTAT-CTCCTGAAGTTGCA-TGGAGCAGA
8266540 TTAAAGCCAA
Statistics
Matches: 574, Mismatches: 82, Indels: 151
0.71 0.10 0.19
Matches are distributed among these distances:
40 57 0.10
41 30 0.05
42 23 0.04
43 48 0.08
44 167 0.29
45 218 0.38
46 27 0.05
47 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (42 bp):
AGTCTTATCTCCTGAAGTTGCATGGAGCAGACTAAGATAGCA
Found at i:8265885 original size:45 final size:44
Alignment explanation
Indices: 8265766--8266628 Score: 396
Period size: 44 Copynumber: 19.7 Consensus size: 44
8265756 CCGCATCTAG
* * * *
8265766 TCTTATCTCCTTGAAGTTGCAATGGAGCAGACT-AAG-TAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TGAAGAT-GGCAAA
* *
8265810 TCTTATC-CTCCTAAAGTTGCTGT-GAGGCAGACTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TGAAGATGGCAAA
* **
8265855 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGACCG-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAGATGGCA-AA
* * * * * * * *** *
8265899 TCCTGTCTTCCTGAAGTTGCATTGGAGCGGATTAAAACCTCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAGATGGCAAA
* * * * *
8265943 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCG--CAT--CTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-GAAGATGGCAAA
** *
8265983 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGCAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TGAAG-ATGGCAAA
*
8266028 TCTTATC-CTCCTGAATTTGCAGT-GAGGCAGACTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TGAAGATGGCAAA
*
8266073 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA-A--GCATATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAGATGGC--A-AA
* * * * * * *** *
8266117 T-TATATATTCCTGAAGTTGCATTGGAGCGGATTAAAACCTCAGA
1 TCT-TATCTCCCTGAAGTTGCAGTGGAGCAGATGAAGATGGCAAA
* * * * *
8266161 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCG--CAT--CTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-GAAGATGGCAAA
* * ** *
8266201 TTTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AATCAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TGAA-GATGGCAAA
8266246 TCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TGAAGATGGCAAA
* *
8266291 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA-A-GCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAGATGGC-A-AA
* * * * * *** *
8266335 TCCTATCTCCCTGAATTTGCATTGGAGCAGATTAAAACCTCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAGATGGCAAA
* * * **
8266379 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCATCTGG----
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-GAAGATGGCAAA
* * ** *
8266419 TCTTATCTCACTGAAGTTACAGTGGAGCAGACT-AAGCAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TGAAG-ATGGCAAA
* *
8266464 TCTTGTC-CTCCTGAAGTTGCAGTGAAGCAGACTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGAGCAGA-TGAAGATGGCAAA
* *
8266509 TCTTATC-CTCCTGAAGTTGCAGTGGAGCAGATTAA-A-GCCAATAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGAGCAGATGAAGATGGC-A-AA
* * ** ** * * *** *
8266553 TCCTATCTCCCTGAAATTATAGTGGAGTGGATTAAAACCTCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAGATGGCAAA
8266597 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
8266629 TGGTAGATCA
Statistics
Matches: 633, Mismatches: 125, Indels: 122
0.72 0.14 0.14
Matches are distributed among these distances:
40 64 0.10
41 24 0.04
42 9 0.01
43 36 0.06
44 257 0.41
45 222 0.35
46 20 0.03
47 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAGATGGCAAA
Found at i:8266134 original size:218 final size:219
Alignment explanation
Indices: 8265757--8266628 Score: 1396
Period size: 218 Copynumber: 4.0 Consensus size: 219
8265747 GATAACAAAC
* * *
8265757 CGCATCTAGTCTTATCTCCTTGAAGTTGCAATGGAGCAGACTAAG-TAAGCAAGTCTTATCCTCC
1 CGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAGCAAGTCTTATCCTCC
* *
8265821 TAAAGTTGCTGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
66 TGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
* * *
8265886 TT-AAGACCGATAATCCTGTCTTCCTGAAGTTGCATTGGAGCGGATTAAAACCTCAGATCTTATC
131 TTAAAGACAGATAATCCTATCTCCCTGAAGTTGCATTGGAGCGGATTAAAACCTCAGATCTTATC
8265950 TCTCTGAAGTTGCAGAGAGCAGAT
196 TCTCTGAAGTTGCAGAGAGCAGAT
8265974 CGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAGCAAGTCTTATCCTCC
1 CGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAGCAAGTCTTATCCTCC
*
8266039 TGAATTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
66 TGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
* ** * *
8266104 TTAAAG-CATATAATTATATATTCCTGAAGTTGCATTGGAGCGGATTAAAACCTCAGATCTTATC
131 TTAAAGACAGATAATCCTATCTCCCTGAAGTTGCATTGGAGCGGATTAAAACCTCAGATCTTATC
8266168 TCTCTGAAGTTGCAGAGAGCAGAT
196 TCTCTGAAGTTGCAGAGAGCAGAT
* *
8266192 CGCATCTAGTTTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAATCAAAGCAAGTCTTATCCTCC
1 CGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAGCAAGTCTTATCCTCC
8266257 TGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
66 TGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
* * *
8266322 TTAAAG-CCGATAATCCTATCTCCCTGAATTTGCATTGGAGCAGATTAAAACCTCAGATCTTATC
131 TTAAAGACAGATAATCCTATCTCCCTGAAGTTGCATTGGAGCGGATTAAAACCTCAGATCTTATC
8266386 TCTCTGAAGTTGCAGAGAGCAGAT
196 TCTCTGAAGTTGCAGAGAGCAGAT
* * * *
8266410 CGCATCTGGTCTTATCTCACTGAAGTTACAGTGGAGCAGACTAAGCAAAGCAAGTCTTGTCCTCC
1 CGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAGCAAGTCTTATCCTCC
*
8266475 TGAAGTTGCAGTGAAGCAGACTGAAGATGGCAAATCTTATC-CTCCTGAAGTTGCAGTGGAGCAG
66 TGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTC-CCTGAAGTTGCAGTGGAGCAG
* * ** * *
8266539 ATTAAAGCCA-ATAATCCTATCTCCCTGAAATTATAGTGGAGTGGATTAAAACCTCAGATCTTAT
130 ATTAAAGACAGATAATCCTATCTCCCTGAAGTTGCATTGGAGCGGATTAAAACCTCAGATCTTAT
* *
8266603 CTCCCTGAAGTTGCAGTGGAGCAGAT
195 CTCTCTGAAGTTGCAG-AGAGCAGAT
8266629 TGGTAGATCA
Statistics
Matches: 611, Mismatches: 39, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
217 44 0.07
218 555 0.91
219 12 0.02
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (219 bp):
CGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAGCAAGTCTTATCCTCC
TGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
TTAAAGACAGATAATCCTATCTCCCTGAAGTTGCATTGGAGCGGATTAAAACCTCAGATCTTATC
TCTCTGAAGTTGCAGAGAGCAGAT
Found at i:8268904 original size:98 final size:98
Alignment explanation
Indices: 8268774--8268968 Score: 363
Period size: 98 Copynumber: 2.0 Consensus size: 98
8268764 AAAAAAATAA
* * *
8268774 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAAGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
8268839 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
8268872 TAAAAGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAAGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
8268937 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
8268969 AGTTTTATTG
Statistics
Matches: 94, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (98 bp):
TAAAAGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:8270202 original size:17 final size:17
Alignment explanation
Indices: 8270167--8270202 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8270157 CGCAAACTAG
*
8270167 AGGAAAAAGAAAATAAA
1 AGGAAAAAGAAAAGAAA
*
8270184 AGGAAAAAGAAAAGCAA
1 AGGAAAAAGAAAAGAAA
8270201 AG
1 AG
8270203 CAAAGTTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.72, C:0.03, G:0.22, T:0.03
Consensus pattern (17 bp):
AGGAAAAAGAAAAGAAA
Found at i:8272486 original size:38 final size:40
Alignment explanation
Indices: 8272408--8272486 Score: 99
Period size: 38 Copynumber: 2.0 Consensus size: 40
8272398 CGAGTATCTG
* * *
8272408 TTTAATATGATATAATATATACTCAAATTTTCATTTTTTA
1 TTTAATATGATAAAATATATACTCAAATATTAATTTTTTA
* *
8272448 TTTAATATGGTAAAAT-TATA-TGAAATATTAATTTTTTA
1 TTTAATATGATAAAATATATACTCAAATATTAATTTTTTA
8272486 T
1 T
8272487 AGGAAAATTC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
38 16 0.47
39 4 0.12
40 14 0.41
ACGTcount: A:0.39, C:0.04, G:0.05, T:0.52
Consensus pattern (40 bp):
TTTAATATGATAAAATATATACTCAAATATTAATTTTTTA
Found at i:8281321 original size:11 final size:12
Alignment explanation
Indices: 8281302--8281326 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8281292 TTTTTACAAA
8281302 TTCGTTTTTAAT
1 TTCGTTTTTAAT
8281314 TTCGTTTTTAAT
1 TTCGTTTTTAAT
8281326 T
1 T
8281327 ATTATTTCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.08, T:0.68
Consensus pattern (12 bp):
TTCGTTTTTAAT
Found at i:8283820 original size:19 final size:20
Alignment explanation
Indices: 8283783--8283822 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
8283773 TCTTTTTTCA
* *
8283783 TTCATTTCATGCATTTGCAT
1 TTCATTACATGCATATGCAT
8283803 TTCATTACAT-CATATGCAT
1 TTCATTACATGCATATGCAT
8283822 T
1 T
8283823 GGATACTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.25, C:0.20, G:0.07, T:0.47
Consensus pattern (20 bp):
TTCATTACATGCATATGCAT
Found at i:8286696 original size:14 final size:14
Alignment explanation
Indices: 8286677--8286720 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
8286667 AGAGGTGATG
8286677 TGAAAAAGTGAAAA
1 TGAAAAAGTGAAAA
*
8286691 TG-AAAACTGAAAAA
1 TGAAAAAGTG-AAAA
*
8286705 TGAAAAAGTAAAAA
1 TGAAAAAGTGAAAA
8286719 TG
1 TG
8286721 GAGAGGCTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
13 6 0.24
14 14 0.56
15 5 0.20
ACGTcount: A:0.64, C:0.02, G:0.18, T:0.16
Consensus pattern (14 bp):
TGAAAAAGTGAAAA
Found at i:8286717 original size:21 final size:21
Alignment explanation
Indices: 8286677--8286717 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8286667 AGAGGTGATG
*
8286677 TGAAAAAGTGAAAATGAAAAC
1 TGAAAAAGTGAAAAAGAAAAC
8286698 TGAAAAA-TGAAAAAGTAAAA
1 TGAAAAAGTGAAAAAG-AAAA
8286718 ATGGAGAGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.66, C:0.02, G:0.17, T:0.15
Consensus pattern (21 bp):
TGAAAAAGTGAAAAAGAAAAC
Found at i:8289339 original size:132 final size:132
Alignment explanation
Indices: 8288055--8289313 Score: 1592
Period size: 132 Copynumber: 9.5 Consensus size: 132
8288045 TTGCATAGAC
* *
8288055 AGTGAAGCAGATCGAAGATGGC-AGATTTTACCT-CCTCGTGGTTACAGTGGAGTACATTGAAGC
1 AGTGGAGCAGATCAAAGATGGCGA-ATTTTACCTCCCT-GTGGTTACAGTGGAGTACATTGAAGC
* * * *
8288118 CGGTAATTCTACTTCCCTAGGCAGCAGTGGAATAGTTTGAAGATTTCAGATCTTGCCTTCCT--G
64 CAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAG
8288181 CA-T
129 CAGT
* * * *
8288184 AGACAGCAAAGCAGGTCGAAGATGGC-AGATTTTACCT-CCTCGTGGTTACAGTGGAGTACATTG
1 AG--TG--GAGCAGATCAAAGATGGCGA-ATTTTACCTCCCT-GTGGTTACAGTGGAGTACATTG
*
8288247 AAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTTCC
60 AAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCC
*
8288312 T--GCATGGAC
125 TAAGCA--G-T
** * * * * *
8288321 AACGAATCAGATCGAAGATGGTGAATTTTACCT-CATCGTGGTTACAGTGGAGTACATTGAAGCC
1 AGTGGAGCAGATCAAAGATGGCGAATTTTACCTCCCT-GTGGTTACAGTGGAGTACATTGAAGCC
* * * ** * *
8288385 GGTAATTCTACTTCTCTGGGCAGCAGTGGAATAGTTTGAAGATAGCAGGTCTTGCCTTCCTACA-
65 AGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTA-AG
* *
8288449 TAGAC
129 CAG-T
*** * * * *
8288454 AGCAAAACAGATCGAAGATGGCAAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * * *
8288519 GTAATTCTACTTCCCTGGTCAGCAGTGGAATAGATTGAAGATTTTAGATCTTGTCTCCCTAAGCG
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCA
8288584 GT
131 GT
* *
8288586 AGTGGAGCAGATCAAAGATGGC-AGATTTTACCTCCCTGAGGTTGCAGTGGAGTACATTGAAGCC
1 AGTGGAGCAGATCAAAGATGGCGA-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
* * * *
8288650 AG-AATTTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAGGATTTTAGATCTTGTCTCCCTAGG
65 AGTAA-TTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAG
8288714 CAGT
129 CAGT
* * * *
8288718 AGTGGAGCAGATCAAATATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAGGCCA
1 AGTGGAGCAGATCAAAGATGGCGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * * *
8288783 GTAATTCTA-TCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATATTACCTCCCTAGGC
66 GTAATTCTACT-TCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGC
8288847 AGT
130 AGT
* * * **
8288850 AGTTGAGCAGATCAAAGACGGCGGATTTTACCTCATTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * *
8288915 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTAAAGATTTCAGATCTTGTCTCCCCAAGCA
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCA
8288980 GT
131 GT
*
8288982 AGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* *
8289047 ATAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTAAAGATTTCAGATCTTGCCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCA
8289112 GT
131 GT
* * * * * *
8289114 AGTGGAGCAGGTCAAAGATGACGGATTTTACCTCCCCGTGGTTATAGTAGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* *
8289179 ATAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCA
8289244 GT
131 GT
* * *
8289246 AGTGGAGCAGATCAAAGACGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCTA
1 AGTGGAGCAGATCAAAGATGGCGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
8289311 GTA
66 GTA
8289314 TTTTTATCTC
Statistics
Matches: 1009, Mismatches: 101, Indels: 37
0.88 0.09 0.03
Matches are distributed among these distances:
129 2 0.00
131 5 0.00
132 654 0.65
133 342 0.34
134 3 0.00
135 2 0.00
137 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (132 bp):
AGTGGAGCAGATCAAAGATGGCGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCA
GT
Found at i:8293949 original size:3 final size:3
Alignment explanation
Indices: 8293941--8293974 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
8293931 ACTGTTTCTA
*
8293941 TAT TAT TAT TAT TAC TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8293975 CTGCATACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:8294947 original size:3 final size:3
Alignment explanation
Indices: 8294939--8295006 Score: 91
Period size: 3 Copynumber: 21.3 Consensus size: 3
8294929 ATTTAGTCCC
*
8294939 TTA TTA TTA TTA TTA TGTAA CTAA TTA GTTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA T-T-A -TTA TTA -TTA TTA TTA TTA TTA TTA TTA
8294988 TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA T
8295007 CATTTACTTA
Statistics
Matches: 59, Mismatches: 2, Indels: 8
0.86 0.03 0.12
Matches are distributed among these distances:
3 52 0.88
4 5 0.08
5 1 0.02
6 1 0.02
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:8307499 original size:3 final size:3
Alignment explanation
Indices: 8307491--8307522 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8307481 TCATTCTCAA
8307491 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8307523 AATTCTGCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8307770 original size:44 final size:44
Alignment explanation
Indices: 8307715--8308163 Score: 206
Period size: 44 Copynumber: 10.3 Consensus size: 44
8307705 GACACTATCC
* *
8307715 TATCTCCCTGAAGTTACAGTGGAGTGGATTAAAATAAAGGATCT
1 TATCTCCCTGAAGTTACAGTGGAGTAGATTAAAATACAGGATCT
* ** ***
8307759 TATCTCTCTGAAGTTACAGCAGAGTAGA-TCGCAT-CAGG-TCT
1 TATCTCCCTGAAGTTACAGTGGAGTAGATTAAAATACAGGATCT
* * *
8307800 TATCTCCCTGAGGTTACAGTGGAGTAGACTGAAGAATTTCA-GATCT
1 TATCTCCCTGAAGTTACAGTGGAGTAGA-TTAA-AA-TACAGGATCT
* * ** * ** *
8307846 TATCTCCCTG-AGATTACAGCGGAGCAGA-TCGAAGACACTATCC
1 TATCTCCCTGAAG-TTACAGTGGAGTAGATTAAAATACAGGATCT
* * * *
8307889 TATCTCCCTGAAGTTACAGTAGAGTGGATCAAAATAAAGGATCT
1 TATCTCCCTGAAGTTACAGTGGAGTAGATTAAAATACAGGATCT
* ** *** *
8307933 TATCTCTCTGAAGTTACAGCAGAGTAGA-TCGCAT-CATG-TCT
1 TATCTCCCTGAAGTTACAGTGGAGTAGATTAAAATACAGGATCT
** ** *
8307974 TATCTCCCTGGGGTTACAGTGGAGTAGACCGAAGAATTTCA-GATCT
1 TATCTCCCTGAAGTTACAGTGGAGTAGA-TTAA-AA-TACAGGATCT
* * * * * **
8308020 CATCTCCCTGAGGTTACAGTGGTGCAGATTGAAGCA-AGAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGTAGATTAAAATACAG-GATCT
* * * * * *
8308064 TATCTCCCTG-AGATTACAGCGGAGCAGATCGAAGATAC--TATCC
1 TATCTCCCTGAAG-TTACAGTGGAGTAGAT-TAAAATACAGGATCT
* * ** * * *
8308107 TATCTCCCTGAAGTTACAATGAAGCGGATTAAAACAAAAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGTAGATTAAAATACAGGATCT
*
8308151 TATCTCTCTGAAG
1 TATCTCCCTGAAG
8308164 ATGTAGTAGA
Statistics
Matches: 293, Mismatches: 88, Indels: 48
0.68 0.21 0.11
Matches are distributed among these distances:
41 53 0.18
42 12 0.04
43 57 0.19
44 106 0.36
45 8 0.03
46 57 0.19
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGAAGTTACAGTGGAGTAGATTAAAATACAGGATCT
Found at i:8307819 original size:85 final size:85
Alignment explanation
Indices: 8307715--8307998 Score: 347
Period size: 87 Copynumber: 3.3 Consensus size: 85
8307705 GACACTATCC
*
8307715 TATCTCCCTGAAGTTACAGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCA
1 TATCTCCCTGAAGTTACAGTGGAGTGGATCAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCA
*
8307780 GAGTAGATCGCATCAGGTCT
66 GAGTAGATCGCATCATGTCT
* * * ** *
8307800 TATCTCCCTGAGGTTACAGTGGAGTAGACTGAAGAATTTCA-GATCTTATCTCCCTG-AGATTAC
1 TATCTCCCTGAAGTTACAGTGGAGTGGA-TCAA-AA-TAAAGGATCTTATCTCTCTGAAG-TTAC
* * * * * *
8307863 AGCGGAGCAGATCGAAGACACTATCC
62 AGCAGAGTAGATCGCA-TCA-TGTCT
*
8307889 TATCTCCCTGAAGTTACAGTAGAGTGGATCAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCA
1 TATCTCCCTGAAGTTACAGTGGAGTGGATCAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCA
8307954 GAGTAGATCGCATCATGTCT
66 GAGTAGATCGCATCATGTCT
**
8307974 TATCTCCCTGGGGTTACAGTGGAGT
1 TATCTCCCTGAAGTTACAGTGGAGT
8307999 AGACCGAAGA
Statistics
Matches: 162, Mismatches: 29, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
85 51 0.31
86 9 0.06
87 66 0.41
88 9 0.06
89 27 0.17
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (85 bp):
TATCTCCCTGAAGTTACAGTGGAGTGGATCAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCA
GAGTAGATCGCATCATGTCT
Found at i:8307864 original size:46 final size:43
Alignment explanation
Indices: 8307666--8308098 Score: 214
Period size: 44 Copynumber: 9.9 Consensus size: 43
8307656 TGAATATTAG
* * *
8307666 AGATCCTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG-A-C
1 AGATCTTATCTCCCTGAGATTACAGTGGAGTAGAT-GAAGAATC
* * * * *
8307708 ACTATCCTATCTCCCTGA-AGTTACAGTGGAGTGGATTAA-AATAA
1 A-GATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATGAAGAAT-C
* ** * *
8307752 AGGATCTTATCTCTCTGA-AGTTACAGCAGAGTAGAT--CGCATC
1 A-GATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATGAAGAATC
* *
8307794 AGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACTGAAGAATTTC
1 AGATCTTATCTCCCTGAGATTACAGTGGAGTAGA-TGAAGAA--TC
* *
8307840 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG-A-C
1 AGATCTTATCTCCCTGAGATTACAGTGGAGTAGAT-GAAGAATC
* * * * * *
8307882 ACTATCCTATCTCCCTGA-AGTTACAGTAGAGTGGATCAA-AATAA
1 A-GATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATGAAGAAT-C
* ** * *
8307926 AGGATCTTATCTCTCTGA-AGTTACAGCAGAGTAGAT--CGCATC
1 A-GATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATGAAGAATC
* * *
8307968 ATG-TCTTATCTCCCTGGGGTTACAGTGGAGTAGACCGAAGAATTTC
1 A-GATCTTATCTCCCTGAGATTACAGTGGAGTAGA-TGAAGAA--TC
* * * * *
8308014 AGATCTCATCTCCCTGAGGTTACAGTGGTGCAGATTGAAGCAA-G
1 AGATCTTATCTCCCTGAGATTACAGTGGAGTAGA-TGAAG-AATC
* *
8308058 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA
1 AGATCTTATCTCCCTGAGATTACAGTGGAGTAGAT-GAAGA
8308099 TACTATCCTA
Statistics
Matches: 299, Mismatches: 64, Indels: 55
0.72 0.15 0.13
Matches are distributed among these distances:
41 52 0.17
42 15 0.05
43 60 0.20
44 97 0.32
45 3 0.01
46 70 0.23
47 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (43 bp):
AGATCTTATCTCCCTGAGATTACAGTGGAGTAGATGAAGAATC
Found at i:8307962 original size:174 final size:174
Alignment explanation
Indices: 8307666--8308053 Score: 677
Period size: 174 Copynumber: 2.2 Consensus size: 174
8307656 TGAATATTAG
*
8307666 AGATCCTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
* *
8307731 CAGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAG
66 CAGTAGAGTGGATCAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAG
*
8307796 GTCTTATCTCCCTGAGGTTACAGTGGAGTAGACTGAAGAATTTC
131 GTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTC
8307840 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
*
8307905 CAGTAGAGTGGATCAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAT
66 CAGTAGAGTGGATCAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAG
*
8307970 GTCTTATCTCCCTGGGGTTACAGTGGAGTAGACCGAAGAATTTC
131 GTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTC
* * * * *
8308014 AGATCTCATCTCCCTGAGGTTACAGTGGTGCAGATTGAAG
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG
8308054 CAAGAGATCT
Statistics
Matches: 203, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 203 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (174 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
CAGTAGAGTGGATCAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAG
GTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTC
Found at i:8308019 original size:87 final size:87
Alignment explanation
Indices: 8307754--8308038 Score: 335
Period size: 87 Copynumber: 3.3 Consensus size: 87
8307744 TAAAATAAAG
* *
8307754 GATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAG
1 GATCTTATCTCCCTGAAGTTACAGCAGAGTAGATCGCATCATGTCTTATCTCCCTGAGGTTACAG
*
8307819 TGGAGTAGACTGAAGAATTTCA
66 TGGAGTAGACCGAAGAATTTCA
* * * * * * *
8307841 GATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
1 GATCTTATCTCCCTGAAG-TTACAGCAGAGTAGATCGCA-TCA-TGTCTTATCTCCCTGAGGTTA
* * * **
8307905 CAGTAGAGTGGATC-AA-AA-TAAA
63 CAGTGGAGTAGACCGAAGAATTTCA
* *
8307927 GGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCATGTCTTATCTCCCTGGGGTTACA
1 -GATCTTATCTCCCTGAAGTTACAGCAGAGTAGATCGCATCATGTCTTATCTCCCTGAGGTTACA
8307992 GTGGAGTAGACCGAAGAATTTCA
65 GTGGAGTAGACCGAAGAATTTCA
* *
8308015 GATCTCATCTCCCTGAGGTTACAG
1 GATCTTATCTCCCTGAAGTTACAG
8308039 TGGTGCAGAT
Statistics
Matches: 158, Mismatches: 32, Indels: 16
0.77 0.16 0.08
Matches are distributed among these distances:
85 28 0.18
86 8 0.05
87 87 0.55
88 8 0.05
89 27 0.17
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (87 bp):
GATCTTATCTCCCTGAAGTTACAGCAGAGTAGATCGCATCATGTCTTATCTCCCTGAGGTTACAG
TGGAGTAGACCGAAGAATTTCA
Found at i:8308068 original size:218 final size:218
Alignment explanation
Indices: 8307792--8308220 Score: 603
Period size: 218 Copynumber: 2.0 Consensus size: 218
8307782 GTAGATCGCA
* * *
8307792 TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACTGAAGAATTTCAGATCTTATCTCCCTGA
1 TCAGATCTCATCTCCCTGAGGTTACAGTGGAGCAGACTGAAGAA--TCAGATCTTATCTCCCTGA
* *
8307857 GATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGT-AGAGTGGATCAA
64 GATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAATGA-AGCGGATCAA
* * * * *
8307921 AATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATC-ATGTCTTATCTCCCTGG
128 AACAAAAGATCTTATCTCTCTGAAGATACAGCAGAGCAGATCGCATCTA-GTCTTATCTCCCTGA
* *
8307985 GGTTACAGTGGAGTAGACCGAAGAATT
192 AGTTACAGTGGAGCAGACCGAAGAATT
* * *
8308012 TCAGATCTCATCTCCCTGAGGTTACAGTGGTGCAGATTGAAGCAA-GAGATCTTATCTCCCTGAG
1 TCAGATCTCATCTCCCTGAGGTTACAGTGGAGCAGACTGAAG-AATCAGATCTTATCTCCCTGAG
* *
8308076 ATTACAGCGGAGCAGATCGAAGATACTATCCTATCTCCCTGAAGTTACAATGAAGCGGATTAAAA
65 ATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAATGAAGCGGATCAAAA
** * *
8308141 CAAAAGATCTTATCTCTCTGAAGATGTAGTAGAGCAGATCTCATCTAGTCTTATCTCCCTGAAGT
130 CAAAAGATCTTATCTCTCTGAAGATACAGCAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGT
8308206 TACAGTGGAGCAGAC
195 TACAGTGGAGCAGAC
8308221 TAAAACCACA
Statistics
Matches: 185, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
218 144 0.78
219 2 0.01
220 37 0.20
221 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (218 bp):
TCAGATCTCATCTCCCTGAGGTTACAGTGGAGCAGACTGAAGAATCAGATCTTATCTCCCTGAGA
TTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAATGAAGCGGATCAAAAC
AAAAGATCTTATCTCTCTGAAGATACAGCAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTT
ACAGTGGAGCAGACCGAAGAATT
Found at i:8308120 original size:174 final size:173
Alignment explanation
Indices: 8307673--8308124 Score: 568
Period size: 174 Copynumber: 2.6 Consensus size: 173
8307663 TAGAGATCCT
** **
8307673 ATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGTGGA
1 ATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAAGATCCTATCTCCCTGAAGTTACAGCAGA
** * * *
8307738 GTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTAT
66 GCAGATCAAAAT-AACGATCCTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTAT
* *
8307803 CTCCCTGAGGTTACAGTGGAGTAGACTGAAGAATTTCAGATCTT
130 CTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTC
** *
8307847 ATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGTAGA
1 ATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAAGATCCTATCTCCCTGAAGTTACAGCAGA
** * * *
8307912 GTGGATCAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCATGTCTTAT
66 GCAGATCAAAAT-AACGATCCTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTAT
*
8307977 CTCCCTGGGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTC
130 CTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTC
* * * * *
8308021 ATCTCCCTGAGGTTACAGTGGTGCAGATTGAAG-CAAGAGATCTTATCTCCCTG-AGATTACAGC
1 ATCTCCCTGAGATTACAGCGGAGCAGATCGAAGAC-A-AGATCCTATCTCCCTGAAG-TTACAGC
* * * *
8308084 GGAGCAGATCGAAGAT-ACTATCCTATCTCCCTGAAGTTACA
63 AGAGCAGATC-AAAATAACGATCCTATCTCTCTGAAGTTACA
8308125 ATGAAGCGGA
Statistics
Matches: 252, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
173 1 0.00
174 221 0.88
175 26 0.10
176 4 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (173 bp):
ATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAAGATCCTATCTCCCTGAAGTTACAGCAGA
GCAGATCAAAATAACGATCCTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATC
TCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTC
Found at i:8308914 original size:3 final size:3
Alignment explanation
Indices: 8308906--8308936 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
8308896 ACTGTTTCTA
*
8308906 TAT TAT TAT TAT TAC TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8308937 CTACANNNNN
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:8309805 original size:3 final size:3
Alignment explanation
Indices: 8309797--8309867 Score: 99
Period size: 3 Copynumber: 23.3 Consensus size: 3
8309787 TAGTCCATTT
* *
8309797 TTA TTA TTA TTA TT- TAA CTAA TTA GTTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA -TTA TTA TTA TTA TTA TTA TTA
8309843 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
8309868 CATTTACTTA
Statistics
Matches: 63, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
2 1 0.02
3 56 0.89
4 6 0.10
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:8311728 original size:15 final size:16
Alignment explanation
Indices: 8311703--8311737 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
8311693 TTATTAGTCT
8311703 AAAACTATAAAAAAAC
1 AAAACTATAAAAAAAC
*
8311719 AAAA-TATAAAAAAAT
1 AAAACTATAAAAAAAC
8311734 AAAA
1 AAAA
8311738 AAAATTGCGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.80, C:0.06, G:0.00, T:0.14
Consensus pattern (16 bp):
AAAACTATAAAAAAAC
Found at i:8311958 original size:17 final size:17
Alignment explanation
Indices: 8311919--8311960 Score: 52
Period size: 15 Copynumber: 2.5 Consensus size: 17
8311909 AAAGAGTTAT
*
8311919 TTAAAAATAACTAAAAGA
1 TTAAAAAT-ACTAAAAAA
8311937 -T-AAAATACTAAAAAA
1 TTAAAAATACTAAAAAA
8311952 TTAAAAATA
1 TTAAAAATA
8311961 TCATTTTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
15 8 0.38
16 6 0.29
17 7 0.33
ACGTcount: A:0.69, C:0.05, G:0.02, T:0.24
Consensus pattern (17 bp):
TTAAAAATACTAAAAAA
Found at i:8313511 original size:15 final size:16
Alignment explanation
Indices: 8313493--8313522 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8313483 TTATAATTTT
8313493 TATATTTTTA-GATTA
1 TATATTTTTATGATTA
8313508 TATATTTTTATGATT
1 TATATTTTTATGATT
8313523 TTTTAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (16 bp):
TATATTTTTATGATTA
Found at i:8313511 original size:24 final size:24
Alignment explanation
Indices: 8313484--8313552 Score: 81
Period size: 23 Copynumber: 2.9 Consensus size: 24
8313474 TTCCATTATT
*
8313484 TATAATTTTTAT-ATTTTTAGAT-
1 TATAATTTTTATAATTTTTAAATA
*
8313506 TATATATTTTTATGATTTTTTAAATA
1 TATA-ATTTTTAT-AATTTTTAAATA
8313532 T-TAATTTTTATAATTTTTAAA
1 TATAATTTTTATAATTTTTAAA
8313553 AGTTCACATA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
22 4 0.10
23 17 0.43
24 8 0.20
25 10 0.25
26 1 0.03
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (24 bp):
TATAATTTTTATAATTTTTAAATA
Found at i:8314224 original size:29 final size:31
Alignment explanation
Indices: 8314165--8314226 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 31
8314155 TCTTAATATT
* *
8314165 TGTTATCTGTATTTTCATAAAATATTTAATA
1 TGTTATCTATATTTTCATAAAATATCTAATA
*
8314196 TGTTATTTATATTTT-A-AAAATATCTAATA
1 TGTTATCTATATTTTCATAAAATATCTAATA
8314225 TG
1 TG
8314227 GTGCATGAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 14 0.50
30 1 0.04
31 13 0.46
ACGTcount: A:0.37, C:0.05, G:0.06, T:0.52
Consensus pattern (31 bp):
TGTTATCTATATTTTCATAAAATATCTAATA
Found at i:8315047 original size:17 final size:17
Alignment explanation
Indices: 8315015--8315057 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
8315005 TGAAGAAATA
* *
8315015 TTAATTATATTTTTTTGT
1 TTAATT-TAGTTTTTTAT
8315033 TTAATTTAGTTTTTTAT
1 TTAATTTAGTTTTTTAT
*
8315050 TTATTTTA
1 TTAATTTA
8315058 ATTAACCACA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (17 bp):
TTAATTTAGTTTTTTAT
Found at i:8316638 original size:46 final size:46
Alignment explanation
Indices: 8316571--8316711 Score: 128
Period size: 46 Copynumber: 3.1 Consensus size: 46
8316561 TGGGTTAAAT
* *
8316571 CTACACGAA-TCGAATAATAGTGCTC-GGTCACCGGTTAGAGTTGAAC
1 CTACACGAATTAG-ATAATAGTGCTCTGGTCACCCGTTAG-GTTGAAC
* * * ****
8316617 CTACATGAATTGGATAATAGTGC-CTGGTTAGTTATTAGGATTGAAC
1 CTACACGAATTAGATAATAGTGCTCTGGTCACCCGTTAGG-TTGAAC
*
8316663 CTACACGAATTAGATAATAATG-TCTGGTCACCCGTTAGGGTTGAAC
1 CTACACGAATTAGATAATAGTGCTCTGGTCACCCGTTA-GGTTGAAC
8316709 CTA
1 CTA
8316712 TACAACATAT
Statistics
Matches: 75, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
45 2 0.03
46 69 0.92
47 4 0.05
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (46 bp):
CTACACGAATTAGATAATAGTGCTCTGGTCACCCGTTAGGTTGAAC
Found at i:8318092 original size:31 final size:31
Alignment explanation
Indices: 8318057--8318118 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
8318047 TTGTTTCTGA
8318057 TACTATTAAAAAACGGGTTGTTACATTCTCT
1 TACTATTAAAAAACGGGTTGTTACATTCTCT
8318088 TACTATTAAAAAACGGGTTGTTACATTCTCT
1 TACTATTAAAAAACGGGTTGTTACATTCTCT
8318119 AAGGCACCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (31 bp):
TACTATTAAAAAACGGGTTGTTACATTCTCT
Found at i:8319342 original size:25 final size:22
Alignment explanation
Indices: 8319282--8319326 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
8319272 AAATTATAAA
*
8319282 ATATAAAAATATATATATGTAC
1 ATATAAAAAAATATATATGTAC
8319304 ATATAAGAAAAATATATATGTAC
1 ATATAA-AAAAATATATATGTAC
8319327 GTGAATAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.33
Consensus pattern (22 bp):
ATATAAAAAAATATATATGTAC
Found at i:8319470 original size:34 final size:35
Alignment explanation
Indices: 8319419--8319490 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
8319409 GAAGCATAGA
* *
8319419 AAATATATAAAATTATGTGCATATATATAT-TTAT
1 AAATATATAAAAATATGTACATATATATATATTAT
*
8319453 AAATAT-TAAGAAATATGTACGTATATATATATTAT
1 AAATATATAA-AAATATGTACATATATATATATTAT
8319488 AAA
1 AAA
8319491 ATGTATGCAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 3 0.09
34 23 0.70
35 7 0.21
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (35 bp):
AAATATATAAAAATATGTACATATATATATATTAT
Found at i:8321331 original size:44 final size:46
Alignment explanation
Indices: 8321176--8321339 Score: 160
Period size: 44 Copynumber: 3.7 Consensus size: 46
8321166 AACCCGCTCT
* * * * *
8321176 ACTGCAACTTCAGGGAGAT-AGGATT-AGTAGCTTCAATCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGGTTTGAGTATCTTCAACCTACTCC
** * *
8321220 ACTATAACTTCAGAGAGATAA-GATTGAGTATCTTCAACCTATTCC
1 ACTGCAACTTCAGAGAGATAAGGTTTGAGTATCTTCAACCTACTCC
* * * *
8321265 GCTGCAACTTCAGGGAGATAAGGTTTG-TTAT-TTCAACCTACTCT
1 ACTGCAACTTCAGAGAGATAAGGTTTGAGTATCTTCAACCTACTCC
*
8321309 ATTGCAACTTCAGAGAGATAAGGTTTG-GTAT
1 ACTGCAACTTCAGAGAGATAAGGTTTGAGTAT
8321340 GATCTACTCT
Statistics
Matches: 98, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
44 58 0.59
45 36 0.37
46 4 0.04
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (46 bp):
ACTGCAACTTCAGAGAGATAAGGTTTGAGTATCTTCAACCTACTCC
Found at i:8321359 original size:41 final size:43
Alignment explanation
Indices: 8321172--8321371 Score: 147
Period size: 44 Copynumber: 4.6 Consensus size: 43
8321162 TTTTAACCCG
* * * * *
8321172 CTCTACTGCAACTTCAGGGAGAT-AGGATTAGTAGCTTCAATCTG
1 CTCTACTGCAACTTCAGAGAGATAAGGTTTGGTA--TTCAACCTA
* ** *
8321216 CTCCACTATAACTTCAGAGAGATAA-GATTGAGTATCTTCAACCTA
1 CTCTACTGCAACTTCAGAGAGATAAGGTTTG-GTA--TTCAACCTA
* ** * *
8321261 TTCCGCTGCAACTTCAGGGAGATAAGGTTTGTTATTTCAACCTA
1 CTCTACTGCAACTTCAGAGAGATAAGGTTTGGTA-TTCAACCTA
* * *
8321305 CTCTATTGCAACTTCAGAGAGATAAGGTTTGGTA-T-GATCTA
1 CTCTACTGCAACTTCAGAGAGATAAGGTTTGGTATTCAACCTA
* *
8321346 CTCTACTGCAACTTCAAATAGATAAG
1 CTCTACTGCAACTTCAGAGAGATAAG
8321372 ATCGGTAATT
Statistics
Matches: 126, Mismatches: 27, Indels: 9
0.78 0.17 0.06
Matches are distributed among these distances:
41 27 0.21
42 1 0.01
44 60 0.48
45 34 0.27
46 4 0.03
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.31
Consensus pattern (43 bp):
CTCTACTGCAACTTCAGAGAGATAAGGTTTGGTATTCAACCTA
Found at i:8321456 original size:50 final size:50
Alignment explanation
Indices: 8321401--8321831 Score: 411
Period size: 50 Copynumber: 8.6 Consensus size: 50
8321391 AATATGTTCC
*
8321401 ACTGCACTGCTAGAGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTA
1 ACTGCACTGCTAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTA
* * **
8321451 ACTGCAATG-TCGGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTCC
1 ACTGCACTGCT-AGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTA
* * * *
8321501 ACTACACCGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTTA
1 ACTGCACTGCTAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTA
* * * * **
8321551 ACTGCA-AGGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCC
1 ACTGCACTGCT-AGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTA
* * * * * *
8321601 ACTACACCGCCAGGAAAGTAAGATTCGCGGTTGTAGCTTCAATCTTTTTA
1 ACTGCACTGCTAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTA
* * * * * *
8321651 ACTGCAATG-TCGAGAAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTTC
1 ACTGCACTGCTAG-GGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTA
* * * *
8321701 ACTGCACCGCCAGGGAAGTGAGTTTCGCTGTTGTAGCTTCAATCTATTTA
1 ACTGCACTGCTAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTA
* * * * * * **
8321751 ACTGCAATG-TCGGGGAAGCAAGAGTCGCTATTGTAGCTTCAATCTGTTCC
1 ACTGCACTGCT-AGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTA
* * * *
8321801 ATTGCACTGCCAAGGAAGTAAGATTCACTGT
1 ACTGCACTGCTAGGGAAGTAAGATTCGCTGT
8321832 GATAACTTCA
Statistics
Matches: 300, Mismatches: 73, Indels: 16
0.77 0.19 0.04
Matches are distributed among these distances:
49 3 0.01
50 295 0.98
51 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.31
Consensus pattern (50 bp):
ACTGCACTGCTAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTA
Found at i:8321522 original size:100 final size:100
Alignment explanation
Indices: 8321397--8321831 Score: 636
Period size: 100 Copynumber: 4.3 Consensus size: 100
8321387 CTTTAATATG
* * *
8321397 TTCCACTGCACTGCTAGAGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTC
1 TTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTC
*
8321462 GGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTA
66 GGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTA
* * *
8321497 TTCCACTACACCGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTTAACTGCAAGGTC
1 TTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTC
8321562 GGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTA
66 GGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTA
* * * *
8321597 TTCCACTACACCGCCAGGAAAGTAAGATTCGCGGTTGTAGCTTCAATCTTTTTAACTGCAATGTC
1 TTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTC
* * * * *
8321662 GAGAAAGTAAGATTCACTGTTGTAGCTTCAATCTG
66 GGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTA
* * *
8321697 TTTCACTGCACCGCCAGGGAAGTGAGTTTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTC
1 TTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTC
* * *
8321762 GGGGAAGCAAGAGTCGCTATTGTAGCTTCAATCTG
66 GGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTA
* * * *
8321797 TTCCATTGCACTGCCAAGGAAGTAAGATTCACTGT
1 TTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGT
8321832 GATAACTTCA
Statistics
Matches: 300, Mismatches: 35, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 300 1.00
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (100 bp):
TTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTC
GGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTA
Found at i:8321865 original size:150 final size:150
Alignment explanation
Indices: 8321415--8321866 Score: 514
Period size: 150 Copynumber: 3.0 Consensus size: 150
8321405 CACTGCTAGA
8321415 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGTAAGATTCGCT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGTAAGATTCGCT
* * * *
8321480 GTTGTAGCTTCAATCTATTCCACTACACCGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATC
66 GTTGTAGCTTCAATCTATTCCACTGCACTGCCAAGGAAGTAAGATTCACTGTTGTAGCTTCAATC
* * ** *
8321545 TTTTTAACTGCAAGGTCGGG
131 TATTTCACTGCAACCTCAGG
* ** * ** * * * *
8321565 GAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACCGCCAGGAAAGTAAGATTCGCG
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGTAAGATTCGCT
* ** * * * *
8321630 GTTGTAGCTTCAATCTTTTTAACTGCAATGTCGAGAAAGTAAGATTCACTGTTGTAGCTTCAATC
66 GTTGTAGCTTCAATCTATTCCACTGCACTGCCAAGGAAGTAAGATTCACTGTTGTAGCTTCAATC
* *
8321695 TGTTTCACTGC-ACCGCCAGG
131 TATTTCACTGCAACC-TCAGG
* * * *
8321715 GAAGTGAGTTTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGAGTCGCT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGTAAGATTCGCT
* * * *
8321780 ATTGTAGCTTCAATCTGTTCCATTGCACTGCCAAGGAAGTAAGATTCACTG-TGATAACTTCAAT
66 GTTGTAGCTTCAATCTATTCCACTGCACTGCCAAGGAAGTAAGATTCACTGTTG-TAGCTTCAAT
**
8321844 -TCATCCCACTGCAACCTCAGG
130 CT-ATTTCACTGCAACCTCAGG
8321865 GA
1 GA
8321867 TATGGGTAAC
Statistics
Matches: 243, Mismatches: 55, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
149 4 0.02
150 236 0.97
151 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (150 bp):
GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGTAAGATTCGCT
GTTGTAGCTTCAATCTATTCCACTGCACTGCCAAGGAAGTAAGATTCACTGTTGTAGCTTCAATC
TATTTCACTGCAACCTCAGG
Found at i:8323112 original size:7 final size:6
Alignment explanation
Indices: 8323089--8323153 Score: 57
Period size: 6 Copynumber: 10.8 Consensus size: 6
8323079 GGCCTCTCAT
8323089 TTTTTC -TTTTC TTTTTC TTGTTTC TCTTTT- TCTTTTC -TTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC TT-TTTC T-TTTTC T-TTTTC TTTTTC TTTTTC
*
8323137 TTCTTC TTCTTT- TTTTT
1 TTTTTC TT-TTTC TTTTT
8323154 TTGAAATATT
Statistics
Matches: 51, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
5 13 0.25
6 27 0.53
7 10 0.20
8 1 0.02
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTTTC
Found at i:8323128 original size:31 final size:31
Alignment explanation
Indices: 8323090--8323155 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 31
8323080 GCCTCTCATT
*
8323090 TTTTCTTTTCTTTTTCTTGTT-TCTCTTTTTC
1 TTTTCTTTTCTTTTTCTTCTTCT-TCTTTTTC
*
8323121 TTTTCTTTTCTTTTTCTTCTTCTTCTTTTTT
1 TTTTCTTTTCTTTTTCTTCTTCTTCTTTTTC
8323152 TTTT
1 TTTT
8323156 GAAATATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 31 0.97
32 1 0.03
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (31 bp):
TTTTCTTTTCTTTTTCTTCTTCTTCTTTTTC
Found at i:8323129 original size:25 final size:25
Alignment explanation
Indices: 8323089--8323154 Score: 89
Period size: 25 Copynumber: 2.6 Consensus size: 25
8323079 GGCCTCTCAT
8323089 TTTTTCTTTTCTTTTTCTTGTTTC-TC
1 TTTTTCTTTTC-TTTTCTT-TTTCTTC
8323115 TTTTTCTTTTCTTTTCTTTTTCTTC
1 TTTTTCTTTTCTTTTCTTTTTCTTC
* *
8323140 TTCTTCTTTTTTTTT
1 TTTTTCTTTTCTTTT
8323155 TGAAATATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
24 4 0.11
25 22 0.59
26 11 0.30
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (25 bp):
TTTTTCTTTTCTTTTCTTTTTCTTC
Found at i:8323150 original size:16 final size:16
Alignment explanation
Indices: 8323090--8323155 Score: 75
Period size: 16 Copynumber: 4.2 Consensus size: 16
8323080 GCCTCTCATT
*
8323090 TTTTCTTTTCTTTTTC
1 TTTTCTTCTCTTTTTC
*
8323106 TTGT-TTCTCTTTTTC
1 TTTTCTTCTCTTTTTC
*
8323121 TTTTCTTTTCTTTTTC
1 TTTTCTTCTCTTTTTC
8323137 TTCTTCTTCT-TTTTT-
1 TT-TTCTTCTCTTTTTC
8323152 TTTT
1 TTTT
8323156 GAAATATTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.05
15 15 0.35
16 20 0.47
17 6 0.14
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (16 bp):
TTTTCTTCTCTTTTTC
Found at i:8323255 original size:14 final size:15
Alignment explanation
Indices: 8323232--8323264 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
8323222 ATCAACGTTT
*
8323232 TTCCAGATAAGG-CC
1 TTCCACATAAGGTCC
8323246 TTCCACATAAGGTCC
1 TTCCACATAAGGTCC
8323261 TTCC
1 TTCC
8323265 CAGTTTGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.27
Consensus pattern (15 bp):
TTCCACATAAGGTCC
Found at i:8328453 original size:30 final size:29
Alignment explanation
Indices: 8328405--8328461 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 29
8328395 AGATAAAAAT
8328405 TATAAAATATAAAAATATATATATGTACA
1 TATAAAATATAAAAATATATATATGTACA
*
8328434 TATAAGATATAAGAAATATATATATGTA
1 TATAAAATATAA-AAATATATATATGTA
8328462 TGTGAATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 11 0.42
30 15 0.58
ACGTcount: A:0.56, C:0.02, G:0.07, T:0.35
Consensus pattern (29 bp):
TATAAAATATAAAAATATATATATGTACA
Found at i:8328464 original size:34 final size:34
Alignment explanation
Indices: 8328419--8328489 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
8328409 AAATATAAAA
* * *
8328419 ATATATATATGT-ACATATAAGATATAAGAAATAT
1 ATATATATATGTGA-ATAAAAGAAATAAAAAATAT
*
8328453 ATATATGTATGTGAATAAAAGAAATAAAAAATAT
1 ATATATATATGTGAATAAAAGAAATAAAAAATAT
8328487 ATA
1 ATA
8328490 AAAATATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 31 0.97
35 1 0.03
ACGTcount: A:0.56, C:0.01, G:0.10, T:0.32
Consensus pattern (34 bp):
ATATATATATGTGAATAAAAGAAATAAAAAATAT
Found at i:8328487 original size:30 final size:31
Alignment explanation
Indices: 8328409--8328489 Score: 76
Period size: 34 Copynumber: 2.5 Consensus size: 31
8328399 AAAAATTATA
* *
8328409 AAATATAAAAATATATATATGTACATATAAG
1 AAATAGAAAAATATATATATGTACATAAAAG
* *
8328440 ATATAAGAAATATATATATGTATGTGA-ATAAAAG
1 AAAT-AGAAA-A-ATATATATATGT-ACATAAAAG
8328474 AAATA-AAAAATATATA
1 AAATAGAAAAATATATA
8328490 AAAATATACA
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
30 6 0.15
31 4 0.10
32 7 0.17
33 2 0.05
34 20 0.50
35 1 0.03
ACGTcount: A:0.59, C:0.01, G:0.09, T:0.31
Consensus pattern (31 bp):
AAATAGAAAAATATATATATGTACATAAAAG
Found at i:8334632 original size:35 final size:35
Alignment explanation
Indices: 8334572--8334638 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
8334562 TAGGTTTTCC
8334572 TTTCTTTTTCTTTTCTTTTCATTTTTAGATTAAGT
1 TTTCTTTTTCTTTTCTTTTCATTTTTAGATTAAGT
8334607 TTTCTCTTTTCTTTTCTTTTC-TTTTTAGATTA
1 TTTCT-TTTTCTTTTCTTTTCATTTTTAGATTA
8334639 GATTAGATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
35 16 0.52
36 15 0.48
ACGTcount: A:0.12, C:0.13, G:0.04, T:0.70
Consensus pattern (35 bp):
TTTCTTTTTCTTTTCTTTTCATTTTTAGATTAAGT
Found at i:8337521 original size:21 final size:19
Alignment explanation
Indices: 8337495--8337533 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
8337485 CCGGCCCGGT
8337495 TTTTAATAAACACAAAAAATA
1 TTTTAA-AAACA-AAAAAATA
*
8337516 TTTTAAAAATAAAAAAAT
1 TTTTAAAAACAAAAAAAT
8337534 TTAAAGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 4 0.24
21 6 0.35
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (19 bp):
TTTTAAAAACAAAAAAATA
Found at i:8337828 original size:19 final size:18
Alignment explanation
Indices: 8337801--8337843 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
8337791 ATTACAAAAA
8337801 AAAAATTAAAATCATTTTT
1 AAAAATTAAAAT-ATTTTT
*
8337820 AAAATTTAAAATATTTTT
1 AAAAATTAAAATATTTTT
8337838 ATAAAA
1 A-AAAA
8337844 ATTTTAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (18 bp):
AAAAATTAAAATATTTTT
Found at i:8357458 original size:11 final size:11
Alignment explanation
Indices: 8357444--8357483 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
8357434 GAAAGGGTTA
8357444 AGAAAAATAAG
1 AGAAAAATAAG
*
8357455 AGAAAAAATTA-
1 AG-AAAAATAAG
8357466 AGAAAAATAAG
1 AGAAAAATAAG
8357477 AGAAAAA
1 AGAAAAA
8357484 ATTTACTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 7 0.28
11 11 0.44
12 7 0.28
ACGTcount: A:0.75, C:0.00, G:0.15, T:0.10
Consensus pattern (11 bp):
AGAAAAATAAG
Found at i:8357466 original size:22 final size:22
Alignment explanation
Indices: 8357441--8357486 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
8357431 TAAGAAAGGG
8357441 TTAAGAAAAATAAGAGAAAAAA
1 TTAAGAAAAATAAGAGAAAAAA
8357463 TTAAGAAAAATAAGAGAAAAAA
1 TTAAGAAAAATAAGAGAAAAAA
8357485 TT
1 TT
8357487 TACTTTTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (22 bp):
TTAAGAAAAATAAGAGAAAAAA
Found at i:8357467 original size:13 final size:12
Alignment explanation
Indices: 8357446--8357485 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
8357436 AAGGGTTAAG
8357446 AAAAATAAGAGA
1 AAAAATAAGAGA
*
8357458 AAAAATTA-AG-
1 AAAAATAAGAGA
8357468 AAAAATAAGAGA
1 AAAAATAAGAGA
8357480 AAAAAT
1 AAAAAT
8357486 TTACTTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
10 7 0.29
11 4 0.17
12 13 0.54
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.12
Consensus pattern (12 bp):
AAAAATAAGAGA
Found at i:8357934 original size:2 final size:2
Alignment explanation
Indices: 8357915--8357962 Score: 71
Period size: 2 Copynumber: 24.5 Consensus size: 2
8357905 TTTATGTTTC
* *
8357915 AT AT AT TT AA AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8357956 AT AT AT A
1 AT AT AT A
8357963 AAAGTTAAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8361132 original size:24 final size:24
Alignment explanation
Indices: 8361105--8361174 Score: 67
Period size: 24 Copynumber: 3.1 Consensus size: 24
8361095 TTTCATTGAC
*
8361105 AAGTAGAAGAATGTAAAATATTAA
1 AAGTAGAAGAAAGTAAAATATTAA
* *
8361129 AAGTAAAACAAAGT-AAA-A--AA
1 AAGTAGAAGAAAGTAAAATATTAA
* *
8361149 AAGAAGAAGAAAATAAAATATTAA
1 AAGTAGAAGAAAGTAAAATATTAA
8361173 AA
1 AA
8361175 AATCAATGAG
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
20 12 0.34
21 3 0.09
22 2 0.06
23 3 0.09
24 15 0.43
ACGTcount: A:0.69, C:0.01, G:0.13, T:0.17
Consensus pattern (24 bp):
AAGTAGAAGAAAGTAAAATATTAA
Found at i:8361408 original size:15 final size:15
Alignment explanation
Indices: 8361388--8361417 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8361378 CTGGAGAAAT
8361388 TAAAAGCCCATCTCC
1 TAAAAGCCCATCTCC
8361403 TAAAAGCCCATCTCC
1 TAAAAGCCCATCTCC
8361418 GGAGCTTGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.40, G:0.07, T:0.20
Consensus pattern (15 bp):
TAAAAGCCCATCTCC
Found at i:8382929 original size:11 final size:11
Alignment explanation
Indices: 8382913--8382950 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
8382903 GTAGGCAACT
8382913 TTTTTTTGCGG
1 TTTTTTTGCGG
8382924 TTTTTTTGCGG
1 TTTTTTTGCGG
*
8382935 TTTTTTTGCGC
1 TTTTTTTGCGG
8382946 TTTTT
1 TTTTT
8382951 GCTTCTTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.00, C:0.11, G:0.21, T:0.68
Consensus pattern (11 bp):
TTTTTTTGCGG
Found at i:8383583 original size:31 final size:32
Alignment explanation
Indices: 8383524--8383588 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
8383514 GGCAAATTAC
8383524 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
8383556 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
8383587 AA
1 AA
8383589 ATTATCTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.39
32 20 0.61
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:8385156 original size:22 final size:22
Alignment explanation
Indices: 8385131--8385185 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
8385121 TAATATTTAT
8385131 AAGTGTTCCAATGAAACACTCC
1 AAGTGTTCCAATGAAACACTCC
*
8385153 AAGTGTTCTAATGAAACACTCC
1 AAGTGTTCCAATGAAACACTCC
* *
8385175 AAATATTCCAA
1 AAGTGTTCCAA
8385186 GAATCAAACT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.40, C:0.24, G:0.11, T:0.25
Consensus pattern (22 bp):
AAGTGTTCCAATGAAACACTCC
Found at i:8387936 original size:44 final size:43
Alignment explanation
Indices: 8387794--8387978 Score: 223
Period size: 43 Copynumber: 4.3 Consensus size: 43
8387784 TTATTTTTAA
* **
8387794 AAACGCCGCTAAAGACCATGTTCTTTAGCTG-CGCTTTTCCCAC
1 AAACGCCGCTAAAGACCTTGACCTTTAGC-GACGCTTTTCCCAC
8387837 AAACGCCGCTAAAGACCTTGACCTTTAGCGACGCTTTTCCCAC
1 AAACGCCGCTAAAGACCTTGACCTTTAGCGACGCTTTTCCCAC
* *
8387880 AAACGCTGCTAAAGACCTTGACCTTTAGCGACGCTTTTTCTCAC
1 AAACGCCGCTAAAGACCTTGACCTTTAGCGACGC-TTTTCCCAC
* * ** * *
8387924 AAACGCCACTAAAGA-ATAAACCTTTAGCGACGCTTATT-GCAA
1 AAACGCCGCTAAAGACCTTGACCTTTAGCGACGCTT-TTCCCAC
8387966 AAACGCCGCTAAA
1 AAACGCCGCTAAA
8387979 AACATAACCT
Statistics
Matches: 126, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
42 17 0.13
43 88 0.70
44 21 0.17
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCTTGACCTTTAGCGACGCTTTTCCCAC
Found at i:8388023 original size:20 final size:21
Alignment explanation
Indices: 8387994--8388046 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
8387984 AACCTTTAAA
*
8387994 AATATATATTTTAAT-CAAAT
1 AATATTTATTTTAATACAAAT
*
8388014 AATATTTATTTTTATGACAAAT
1 AATATTTATTTTAAT-ACAAAT
8388036 -AT-TTTATTTTA
1 AATATTTATTTTA
8388047 TTTTTTTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 21 0.75
21 2 0.07
22 5 0.18
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.53
Consensus pattern (21 bp):
AATATTTATTTTAATACAAAT
Found at i:8391956 original size:113 final size:116
Alignment explanation
Indices: 8391749--8391980 Score: 416
Period size: 113 Copynumber: 2.0 Consensus size: 116
8391739 GATAAATATT
8391749 TATGGTATCAAATTGGTCCTATCAATTTAGCAAATGTAACCAAAAAAAAAAAAGAACCCACCAGT
1 TATGGTATCAAATTGGTCCTATCAATTTAGCAAATGTAACC--AAAAAAAAAAGAACCCACCAGT
8391814 AAATTAAAGCTACGAATGCACTAAAAACTGGCACAAACAAAGTAATACACACC
64 AAATTAAAGCTACGAATGCACTAAAAACTGGCACAAACAAAGTAATACACACC
*
8391867 TATGGTATCGAATTGGTCCTATCAATTTAGCAAATGTAA-C-AAAAAAAAA-AACCCACCAGTAA
1 TATGGTATCAAATTGGTCCTATCAATTTAGCAAATGTAACCAAAAAAAAAAGAACCCACCAGTAA
8391929 ATTAAAGCTACGAATGCACTAAAAACTGGCACAAACAAAGTAATACACACC
66 ATTAAAGCTACGAATGCACTAAAAACTGGCACAAACAAAGTAATACACACC
8391980 T
1 T
8391981 CGGTAGCACC
Statistics
Matches: 113, Mismatches: 1, Indels: 5
0.95 0.01 0.04
Matches are distributed among these distances:
113 65 0.58
114 9 0.08
117 1 0.01
118 38 0.34
ACGTcount: A:0.47, C:0.20, G:0.12, T:0.20
Consensus pattern (116 bp):
TATGGTATCAAATTGGTCCTATCAATTTAGCAAATGTAACCAAAAAAAAAAGAACCCACCAGTAA
ATTAAAGCTACGAATGCACTAAAAACTGGCACAAACAAAGTAATACACACC
Found at i:8392553 original size:8 final size:7
Alignment explanation
Indices: 8392522--8392588 Score: 53
Period size: 7 Copynumber: 9.1 Consensus size: 7
8392512 ACCTAACTCG
8392522 ACCCCTGA
1 ACCCCT-A
*
8392530 ATCCCTA
1 ACCCCTA
* *
8392537 ACTCTTA
1 ACCCCTA
8392544 ACCCCATA
1 ACCCC-TA
*
8392552 ACCTCTA
1 ACCCCTA
*
8392559 ACCCTTAA
1 ACCCCT-A
*
8392567 ACCCTTA
1 ACCCCTA
8392574 ACCCCTA
1 ACCCCTA
8392581 ACCCCTA
1 ACCCCTA
8392588 A
1 A
8392589 ACCTTAAATT
Statistics
Matches: 47, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
7 29 0.62
8 18 0.38
ACGTcount: A:0.31, C:0.45, G:0.01, T:0.22
Consensus pattern (7 bp):
ACCCCTA
Found at i:8392559 original size:22 final size:22
Alignment explanation
Indices: 8392532--8392591 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
8392522 ACCCCTGAAT
* *
8392532 CCCTAACTCTTAACCCCATAAC
1 CCCTAACCCTTAAACCCATAAC
* *
8392554 CTCTAACCCTTAAACCCTTAAC
1 CCCTAACCCTTAAACCCATAAC
*
8392576 CCCTAACCCCTAAACC
1 CCCTAACCCTTAAACC
8392592 TTAAATTCCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.32, C:0.47, G:0.00, T:0.22
Consensus pattern (22 bp):
CCCTAACCCTTAAACCCATAAC
Found at i:8392604 original size:21 final size:21
Alignment explanation
Indices: 8392580--8392660 Score: 60
Period size: 21 Copynumber: 3.8 Consensus size: 21
8392570 CTTAACCCCT
8392580 AACCCCTAAACCTTAAATTCC
1 AACCCCTAAACCTTAAATTCC
* *
8392601 AACCCTTAAACCAT-AA-TCC
1 AACCCCTAAACCTTAAATTCC
* * *
8392620 ATAATCCATAATCCTTAAATT-C
1 --AACCCCTAAACCTTAAATTCC
8392642 ATACTCCCTAAACCTTAAA
1 A-AC-CCCTAAACCTTAAA
8392661 ATAGTAACTC
Statistics
Matches: 45, Mismatches: 9, Indels: 11
0.69 0.14 0.17
Matches are distributed among these distances:
19 3 0.07
20 3 0.07
21 23 0.51
22 15 0.33
23 1 0.02
ACGTcount: A:0.41, C:0.32, G:0.00, T:0.27
Consensus pattern (21 bp):
AACCCCTAAACCTTAAATTCC
Found at i:8393119 original size:41 final size:41
Alignment explanation
Indices: 8392878--8393121 Score: 335
Period size: 41 Copynumber: 6.0 Consensus size: 41
8392868 ATAGTATTTT
* *
8392878 GCATTAGCGGCGCTTTTGCAAAAACGCCGCTAAAGAACAGA
1 GCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCAGA
** * * *
8392919 GCATTAGCGGCGCTTTTCCAAAAAAACCACTAAAGGCAAGA
1 GCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCAGA
** * *
8392960 GCATTAGCGGCGCTTTTTTAAAAACGCCACTAAAGGCCAGA
1 GCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCAGA
* *
8393001 GCATTAGCGACGCTTTTCCAAAAACGCCGCTAAAGACCATA
1 GCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCAGA
** * *
8393042 GCATTAGCGGCGCTTTTATAAAAACGCTGCTAAAGACTAGA
1 GCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCAGA
8393083 GCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCA
1 GCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCA
8393122 CGAAAGGTCC
Statistics
Matches: 175, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 175 1.00
ACGTcount: A:0.34, C:0.25, G:0.21, T:0.20
Consensus pattern (41 bp):
GCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCAGA
Found at i:8393212 original size:40 final size:38
Alignment explanation
Indices: 8393156--8393290 Score: 162
Period size: 39 Copynumber: 3.4 Consensus size: 38
8393146 TGGGCTTAGG
*
8393156 TTTTTTGCGGCGTTTTTCGAAAAACGCCGCTAATGCTCA
1 TTTTTAGCGGCGTTTTTC-AAAAACGCCGCTAATGCTCA
* *
8393195 TTTTTAGCGGCGTTTTTTAAAAACGCCGCTATTGCTCAA
1 TTTTTAGCGGCGTTTTTCAAAAACGCCGCTAATGCTC-A
* * * * *
8393234 TCTTTAGTGGCGATTTTCATAAAGCGCCGCTAATGTTCCA
1 TTTTTAGCGGCGTTTTTCA-AAAACGCCGCTAATGCT-CA
8393274 TTTTTAGCGGCGTTTTT
1 TTTTTAGCGGCGTTTTT
8393291 TGTCCAAACG
Statistics
Matches: 80, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
38 18 0.22
39 32 0.40
40 29 0.36
41 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.39
Consensus pattern (38 bp):
TTTTTAGCGGCGTTTTTCAAAAACGCCGCTAATGCTCA
Found at i:8393307 original size:41 final size:37
Alignment explanation
Indices: 8393177--8393291 Score: 124
Period size: 40 Copynumber: 3.0 Consensus size: 37
8393167 GTTTTTCGAA
8393177 AAACGCCGCTAATGCT-CATTTTTAGCGGCGTTTTTT
1 AAACGCCGCTAATGCTCCATTTTTAGCGGCGTTTTTT
* * * * *
8393213 AAAAACGCCGCTATTGCTCAATCTTTAGTGGCGATTTTCAT
1 --AAACGCCGCTAATGCTCCATTTTTAGCGGCG-TTTT-TT
*
8393254 AAAGCGCCGCTAATGTTCCATTTTTAGCGGCGTTTTTT
1 AAA-CGCCGCTAATGCTCCATTTTTAGCGGCGTTTTTT
8393292 GTCCAAACGC
Statistics
Matches: 62, Mismatches: 11, Indels: 8
0.77 0.14 0.10
Matches are distributed among these distances:
38 16 0.26
39 18 0.29
40 27 0.44
41 1 0.02
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (37 bp):
AAACGCCGCTAATGCTCCATTTTTAGCGGCGTTTTTT
Found at i:8403810 original size:62 final size:62
Alignment explanation
Indices: 8403696--8403816 Score: 161
Period size: 62 Copynumber: 2.0 Consensus size: 62
8403686 TTTAATCCAA
* *
8403696 TCAATTACCAATTCCCCAAATAATTAAATCAAAACTATGCACTAACCGACAAACTACCACAC
1 TCAATTACCAATTCCCCAAACAATTAAATCAAAACTATGCACTAACCAACAAACTACCACAC
* * ** ** *
8403758 TCAATTACCAATTCCCCCAACAATTAAGTTGAAACTATGCACTAGTCAACAAATTACCA
1 TCAATTACCAATTCCCCAAACAATTAAATCAAAACTATGCACTAACCAACAAACTACCA
8403817 TACTTACGCT
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
62 50 1.00
ACGTcount: A:0.43, C:0.29, G:0.05, T:0.23
Consensus pattern (62 bp):
TCAATTACCAATTCCCCAAACAATTAAATCAAAACTATGCACTAACCAACAAACTACCACAC
Found at i:8406495 original size:14 final size:14
Alignment explanation
Indices: 8406472--8406506 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
8406462 TTATTTTATA
8406472 AAATAACCAAAATT
1 AAATAACCAAAATT
*
8406486 AAATACCCAAAATT
1 AAATAACCAAAATT
*
8406500 AATTAAC
1 AAATAAC
8406507 TGGATTAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.60, C:0.17, G:0.00, T:0.23
Consensus pattern (14 bp):
AAATAACCAAAATT
Found at i:8408207 original size:30 final size:27
Alignment explanation
Indices: 8408138--8408207 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 27
8408128 TTTTAATACC
*
8408138 AAAAAATTTATTTTAAAAATAAAAAAT
1 AAAAAATATATTTTAAAAATAAAAAAT
*
8408165 AAAAAA-AGTATTTTAAAAATATTTTAAAAT
1 AAAAAATA-TATTTTAAAAATA---AAAAAT
8408195 AAAAAATATATTT
1 AAAAAATATATTT
8408208 ATTATATTCG
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
27 19 0.53
30 16 0.44
31 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (27 bp):
AAAAAATATATTTTAAAAATAAAAAAT
Found at i:8410083 original size:10 final size:10
Alignment explanation
Indices: 8410068--8410098 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
8410058 TCAATGTTTT
8410068 TTTAAAAATA
1 TTTAAAAATA
8410078 TTTAAAAATA
1 TTTAAAAATA
*
8410088 TTTACAAATA
1 TTTAAAAATA
8410098 T
1 T
8410099 CAAATAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (10 bp):
TTTAAAAATA
Found at i:8415781 original size:12 final size:13
Alignment explanation
Indices: 8415753--8415781 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8415743 TTTTTAAAAA
8415753 AAAATCTTTACTT
1 AAAATCTTTACTT
8415766 AAAATCTTTA-TT
1 AAAATCTTTACTT
8415778 AAAA
1 AAAA
8415782 ACATACATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.41
Consensus pattern (13 bp):
AAAATCTTTACTT
Found at i:8431205 original size:45 final size:46
Alignment explanation
Indices: 8431110--8431207 Score: 171
Period size: 46 Copynumber: 2.2 Consensus size: 46
8431100 TGTGTATATC
* *
8431110 TATTTTCTTTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAA
1 TATTTTGTTTTAATTAGGAGATTAGATGCTAAAGTTTAAGAGATAA
8431156 TATTTTGTTTTAATTAGGAGATTAGATGCT-AAGTTTAAGAGATAA
1 TATTTTGTTTTAATTAGGAGATTAGATGCTAAAGTTTAAGAGATAA
8431201 TATTTTG
1 TATTTTG
8431208 GTTTCTATCT
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
45 21 0.42
46 29 0.58
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.44
Consensus pattern (46 bp):
TATTTTGTTTTAATTAGGAGATTAGATGCTAAAGTTTAAGAGATAA
Found at i:8435782 original size:45 final size:46
Alignment explanation
Indices: 8435687--8435784 Score: 171
Period size: 46 Copynumber: 2.2 Consensus size: 46
8435677 TGTGTATATC
* *
8435687 TATTTTCTTTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAA
1 TATTTTGTTTTAATTAGGAGATTAGATGCTAAAGTTTAAGAGATAA
8435733 TATTTTGTTTTAATTAGGAGATTAGATGCT-AAGTTTAAGAGATAA
1 TATTTTGTTTTAATTAGGAGATTAGATGCTAAAGTTTAAGAGATAA
8435778 TATTTTG
1 TATTTTG
8435785 GTTTCTATCT
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
45 21 0.42
46 29 0.58
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.44
Consensus pattern (46 bp):
TATTTTGTTTTAATTAGGAGATTAGATGCTAAAGTTTAAGAGATAA
Found at i:8437780 original size:15 final size:15
Alignment explanation
Indices: 8437760--8437811 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
8437750 ACTAAAAAAC
8437760 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
8437775 ATTTATAATTTTAATAAAT
1 ATTTAT--TATTAAT--AT
*
8437794 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
8437809 ATT
1 ATT
8437812 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 11 0.37
17 11 0.37
19 8 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:8444633 original size:26 final size:26
Alignment explanation
Indices: 8444604--8444653 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
8444594 TAAAGACCAA
*
8444604 ATTATATTAAAAATTTAAATATAAGG
1 ATTAAATTAAAAATTTAAATATAAGG
** *
8444630 ATTAAATTTTAAATTTAATTATAA
1 ATTAAATTAAAAATTTAAATATAA
8444654 TAGGGGACTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (26 bp):
ATTAAATTAAAAATTTAAATATAAGG
Found at i:8444928 original size:29 final size:31
Alignment explanation
Indices: 8444895--8444958 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
8444885 GTATATTTGG
*
8444895 AATTTAAT-CTCC-ATATTTT-AATTTTCAAA
1 AATTTAATCCTCCTAT-TTTTCAATTTTAAAA
*
8444924 AATTTAATCCTTCTATTTTTCAATTTTAAAA
1 AATTTAATCCTCCTATTTTTCAATTTTAAAA
8444955 AATT
1 AATT
8444959 AGGTTCATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 8 0.27
30 7 0.23
31 15 0.50
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (31 bp):
AATTTAATCCTCCTATTTTTCAATTTTAAAA
Found at i:8448420 original size:3 final size:3
Alignment explanation
Indices: 8448405--8448471 Score: 68
Period size: 3 Copynumber: 22.7 Consensus size: 3
8448395 AGGGTTATAG
* *
8448405 TAA TAA AAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TGAA T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA
*
8448450 TAA T-A TAGA -AA TAA AAA TAA TA
1 TAA TAA TA-A TAA TAA TAA TAA TA
8448472 TTAACTTAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
2 5 0.09
3 44 0.83
4 4 0.08
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (3 bp):
TAA
Done.