genome.fa.s10.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  36  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10700684--10700846	42	3.9	42	79	10	165	44	17	19	18	1.87
10700770--10700843	21	3.5	21	70	7	60	44	17	18	18	1.87
10702688--10702761	28	2.6	28	78	2	85	28	12	27	32	1.92
10706196--10706306	55	2.0	55	98	0	213	36	0	26	36	1.57
10706287--10706326	21	1.9	21	85	10	55	52	2	35	10	1.48
10709059--10709108	18	2.8	18	84	0	73	40	18	0	42	1.50
10716666--10716721	24	2.4	24	84	3	69	28	16	12	42	1.84
10721450--10721558	22	5.0	22	70	3	58	18	26	17	37	1.93
10723610--10723652	21	2.1	21	83	8	54	27	4	2	65	1.25
10723927--10723956	15	1.9	16	93	6	53	26	3	0	70	1.03
10727551--10727601	24	2.1	24	85	0	66	39	3	7	49	1.51
10732668--10732717	25	2.0	25	96	0	91	42	8	10	40	1.68
10735892--10735956	32	2.1	32	94	2	114	30	10	10	47	1.73
10736490--10736541	9	5.7	9	75	11	52	71	15	13	0	1.15
10736489--10736531	19	2.3	19	83	0	59	74	13	11	0	1.07
10736490--10736585	31	3.2	30	83	12	119	69	14	11	4	1.32
10736558--10736586	12	2.4	12	100	0	58	72	13	6	6	1.26
10746542--10746599	22	2.7	21	84	7	80	32	3	18	44	1.67
10746552--10746596	23	2.0	22	91	4	72	31	4	17	46	1.68
10750337--10750401	32	2.1	32	97	2	123	30	9	12	47	1.72
10750967--10751007	22	1.9	22	85	5	57	26	14	24	34	1.94
10751582--10751641	20	3.0	20	80	4	59	31	26	8	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10753042--10753491	51	8.9	51	76	6	414	29	14	25	29	1.95
10753041--10753491	102	4.4	102	89	1	631	29	14	25	29	1.95
10756574--10756636	30	2.1	30	90	0	99	53	15	6	23	1.65
10769654--10769711	9	6.2	9	84	4	62	24	43	0	32	1.55
10772352--10772456	41	2.5	41	93	1	174	23	30	32	13	1.93
10775714--10775785	3	23.7	3	88	8	110	63	0	1	34	1.03
10777072--10777116	18	2.3	20	85	11	67	53	26	0	20	1.46
10779644--10779709	33	2.0	33	93	0	114	24	18	24	33	1.97
10780252--10780308	30	1.9	30	96	0	105	26	12	14	47	1.79
10784506--10784729	44	5.1	44	79	0	234	33	17	20	29	1.95
10786249--10786376	60	2.2	60	81	6	147	32	9	1	56	1.41
10786270--10786394	60	2.1	60	84	3	162	31	9	1	57	1.40
10786330--10786718	69	5.6	68	80	8	367	30	7	2	60	1.35
10786436--10786474	20	1.9	20	89	5	60	28	5	0	66	1.12
10786356--10786719	140	2.6	139	82	7	402	30	6	2	60	1.35
10786514--10786558	21	2.3	21	85	11	60	22	8	0	68	1.16
10793220--10793278	29	2.0	29	96	0	109	18	16	22	42	1.89
10797282--10797307	5	5.2	5	100	0	52	80	0	0	19	0.71
10805016--10806029	336	3.0	336	94	0	1758	29	15	22	31	1.95
10810610--10810780	40	4.3	40	89	0	261	33	30	20	15	1.93
10811865--10811904	21	1.9	20	85	10	53	50	7	2	40	1.44
10816172--10816233	32	1.9	32	96	0	115	30	30	0	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10817391--10817448	29	2.0	29	96	0	107	39	6	8	44	1.62
10818348--10818392	23	2.0	23	82	8	56	62	2	2	33	1.20
10829431--10829494	3	21.3	3	96	0	119	34	1	0	64	1.03
10829690--10829727	19	2.0	19	100	0	76	42	21	0	36	1.53
10831432--10831508	9	8.4	9	83	8	75	42	23	10	23	1.84
10831508--10831533	7	3.7	7	100	0	52	11	0	0	88	0.52
10831655--10831684	13	2.3	13	100	0	60	16	0	43	40	1.48
10834893--10834940	20	2.3	21	82	13	64	22	4	2	70	1.15
10834893--10834941	21	2.4	20	86	10	64	24	4	2	69	1.17
10834907--10834946	20	2.0	21	90	5	64	25	5	2	67	1.23
10834938--10834991	22	2.5	22	78	6	56	48	1	5	44	1.37
10838532--10838629	28	3.5	28	88	0	142	30	12	27	29	1.93
10838800--10838830	2	15.5	2	100	0	62	51	0	0	48	1.00
10839404--10839720	70	4.5	70	96	0	571	23	13	18	43	1.86
10839715--10839990	70	3.9	70	78	11	264	25	13	19	42	1.87
10839498--10839937	235	1.9	234	94	2	776	24	13	19	42	1.87
10839568--10839885	165	1.9	164	98	0	609	24	13	18	43	1.87
10845351--10845503	29	5.3	28	71	10	103	25	24	12	37	1.91
10848519--10848548	13	2.3	13	94	0	51	56	0	0	43	0.99
10859466--10859491	7	3.7	7	100	0	52	11	0	0	88	0.52
10860675--10860717	15	2.7	16	82	17	54	20	4	11	62	1.46
10865719--10865789	21	3.4	21	67	21	67	35	12	22	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10865687--10865847	42	3.8	42	90	0	250	30	11	29	27	1.92
10868312--10868429	51	2.3	51	83	1	146	28	15	27	28	1.96
10868447--10868562	51	2.3	51	85	5	171	29	21	21	27	1.99
10868654--10869073	44	9.3	44	71	13	147	30	18	23	27	1.98
10868821--10869072	92	2.7	95	78	12	251	30	18	21	29	1.97
10868916--10869073	44	3.6	44	81	6	171	29	19	22	28	1.98
10871112--10871154	15	2.7	16	82	17	54	20	4	11	62	1.46
10872789--10872845	18	3.0	20	75	15	66	8	14	7	70	1.33
10872783--10872837	18	2.9	19	78	10	53	9	14	5	70	1.30
10877428--10877496	28	2.5	28	82	0	75	33	24	14	27	1.94
10881901--10882010	31	3.7	30	80	2	132	34	22	2	40	1.69
10881901--10882025	30	4.2	30	80	7	137	36	21	2	40	1.67
10881901--10882018	59	2.0	61	89	3	186	34	22	2	40	1.67
10882431--10882464	16	2.0	16	88	11	50	55	0	44	0	0.99
10882558--10882609	4	12.5	4	78	13	52	76	0	23	0	0.78
10882555--10882612	11	5.2	11	79	10	64	77	0	22	0	0.77
10882569--10882610	21	1.9	22	90	9	68	78	0	21	0	0.75
10882710--10882736	14	1.9	14	100	0	54	74	11	14	0	1.08
10882877--10882916	11	3.5	11	87	12	55	80	0	20	0	0.72
10882880--10882916	10	3.5	11	85	14	51	81	0	18	0	0.70
10883056--10883089	12	2.8	12	86	13	52	26	0	0	73	0.83
10883503--10883632	17	7.3	18	74	12	65	33	14	10	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10883504--10883563	19	3.2	19	86	9	86	38	18	10	33	1.84
10883594--10883637	18	2.3	19	88	7	63	38	15	9	36	1.80
10883606--10883651	19	2.4	18	82	10	56	39	13	10	36	1.79
10885313--10885347	4	9.0	4	87	6	54	28	22	0	48	1.51
10886816--10886845	15	1.9	16	93	6	53	33	36	13	16	1.88
10891089--10892490	78	18.1	74	78	11	1032	28	16	20	33	1.95
10891096--10892459	156	8.8	153	81	9	1305	29	16	20	33	1.95
10891096--10892465	155	8.8	155	81	8	1063	28	16	21	33	1.95
10892645--10892703	31	1.9	31	92	0	100	37	22	1	38	1.64
10892645--10892714	31	2.3	31	87	2	97	38	22	1	37	1.64
10892646--10892772	30	4.2	29	74	5	110	34	19	4	40	1.73
10893450--10893476	14	1.9	14	100	0	54	74	7	14	3	1.18
10893453--10893492	18	2.2	19	86	4	55	77	5	15	2	1.04
10893631--10893668	10	3.5	11	85	7	51	81	0	18	0	0.69
10893629--10893668	12	3.5	11	93	6	62	82	0	17	0	0.67
10893808--10893841	12	2.8	12	86	13	52	26	0	0	73	0.83
10893905--10893929	12	2.1	12	100	0	50	16	8	36	40	1.77
10894258--10894424	17	9.2	19	76	8	75	35	13	11	39	1.81
10894276--10894442	19	9.3	18	71	10	85	34	11	11	41	1.78
10903114--10904273	381	3.0	381	93	4	2052	28	16	16	39	1.90
10908105--10908150	9	5.3	9	84	5	60	78	0	0	21	0.76
10908105--10908158	17	3.1	16	80	19	56	74	1	0	24	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10908168--10908194	6	4.5	6	100	0	54	55	14	0	29	1.40
10908166--10908200	12	2.8	13	87	12	56	57	11	0	31	1.34
10913809--10913881	17	4.3	16	74	17	67	68	0	0	31	0.90
10913809--10913899	18	5.3	17	77	13	80	71	1	0	27	0.93
10913808--10913900	9	10.7	9	72	18	63	72	1	0	26	0.92
10913843--10913939	10	10.1	10	72	13	53	67	2	2	28	1.14
10913809--10913882	9	8.6	9	72	19	68	68	0	0	31	0.89
10913913--10913951	19	2.0	19	85	14	53	61	7	2	28	1.37
10914264--10914318	20	2.7	21	83	10	62	38	1	0	60	1.08
10923466--10923511	3	15.3	3	95	0	65	26	0	34	39	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202