Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62175169
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 981721 characters in sequence are not A, C, G, or T
File 60 of 202
Found at i:17712745 original size:38 final size:39
Alignment explanation
Indices: 17712654--17712753 Score: 114
Period size: 39 Copynumber: 2.6 Consensus size: 39
17712644 CAAGTATAAC
* *
17712654 AATTATAA-CTACCATAATTAAAATAATATTTGACTGAAA
1 AATTATAATC-ACAATAATTATAATAATATTTGACTGAAA
* * * *
17712693 AATTACAATTACAATAATTATAATAATATTTGATTG-TA
1 AATTATAATCACAATAATTATAATAATATTTGACTGAAA
*
17712731 AATTATAATCACAATTATTATAA
1 AATTATAATCACAATAATTATAA
17712754 CAAGGATTTC
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
38 21 0.41
39 30 0.59
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (39 bp):
AATTATAATCACAATAATTATAATAATATTTGACTGAAA
Found at i:17721057 original size:17 final size:19
Alignment explanation
Indices: 17721030--17721079 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
17721020 AAAACTTCTC
17721030 ATAATAATTAATTTA-ATT
1 ATAATAATTAATTTACATT
17721048 ATAA-AATTAATTTACATT
1 ATAATAATTAATTTACATT
* *
17721066 ACATTAA-TAATTTA
1 ATAATAATTAATTTA
17721080 ATAAAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 10 0.36
18 16 0.57
19 2 0.07
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (19 bp):
ATAATAATTAATTTACATT
Found at i:17728313 original size:17 final size:17
Alignment explanation
Indices: 17728291--17728339 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
17728281 TAACATTTGT
17728291 TATTTCAATAGCATTGC
1 TATTTCAATAGCATTGC
*
17728308 TATTTCAATAGCATTTC
1 TATTTCAATAGCATTGC
* *
17728325 CATTTCAATATCATT
1 TATTTCAATAGCATT
17728340 ATCTCGATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.31, C:0.18, G:0.06, T:0.45
Consensus pattern (17 bp):
TATTTCAATAGCATTGC
Found at i:17731307 original size:48 final size:48
Alignment explanation
Indices: 17731249--17731341 Score: 143
Period size: 48 Copynumber: 1.9 Consensus size: 48
17731239 AACAAGATAT
17731249 GGAAAGGAAATAGTTATGAAAAGTAATTTA-AGGATTCAAGCAAAATAA
1 GGAAAGGAAATAGTTATGAAAAGTAATTTAGA-GATTCAAGCAAAATAA
* * *
17731297 GGAAATGAAATATTTATGAAAAGTAATTTAGAGATTCAGGCAAAA
1 GGAAAGGAAATAGTTATGAAAAGTAATTTAGAGATTCAAGCAAAA
17731342 AAAATTCTCC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
48 40 0.98
49 1 0.02
ACGTcount: A:0.51, C:0.04, G:0.20, T:0.25
Consensus pattern (48 bp):
GGAAAGGAAATAGTTATGAAAAGTAATTTAGAGATTCAAGCAAAATAA
Found at i:17736433 original size:44 final size:43
Alignment explanation
Indices: 17736342--17738211 Score: 750
Period size: 44 Copynumber: 43.7 Consensus size: 43
17736332 TATCAAGTCC
* * * * * *
17736342 TATCTCCCTAAGAAGTAGTGGAGTAGGTCAAAGATTG-TAGATAT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-GGCTA-ATCT
* *
17736386 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAATACGGCGAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-GGCTAATCT
* * * ** *** * * *
17736430 TATCTTCCTAAGTAGTAGTGAAGCAGATTTAAGCCACCAGTCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGCTAATCT
* * *
17736473 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGG-TAGATTT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-GGCTA-ATCT
* *
17736517 TATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGCGAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-GGCTAATCT
* * ** *** **
17736561 TATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACTAGCCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGCTAATCT
* * * * * * ***
17736604 TATCTCCCTGAGCAGCAGTGGAGTAGGTCAAAAATTTTAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGCTA-ATCT
** * * * * * * * * **
17736648 TGCCTTCCTGTA-CTGGCAGTGAAGCAGATC-AAAAGCACCAGCCT
1 TATCTCCCT-AAGC-AGTAGTGGAGCAGATCGAAGAG-GCTAATCT
* * * * * * *
17736692 TATCTCCCTGAA-CGGCAGTGGAGTAGGTTGAGGATTGC-AGATCT
1 TATCTCCCT-AAGCAGTAGTGGAGCAGATCGAAGA-GGCTA-ATCT
*
17736736 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-GGCTAATCT
* * ** *** * * *
17736780 TATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGCTAATCT
* *
17736823 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGG-TAGATCA
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-GGCTA-ATCT
* * * * *
17736867 TATCTCCCAAAGCAGTAGTGGAGTAGGTCAAAGATGG-TAGATAT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-GGCTA-ATCT
* * * *
17736911 TATCTCCTTAAGCAGTAGTGGAGCAGATCAAAGACGACGAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-GGCTAATCT
** * ** *** * * *
17736955 TATCTTTCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGCTAATCT
* * * *
17736998 TATCTCCCTAAGCAGTAGTGGAGCAGGTTGAAGATAG-TAGATCA
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-GGCTA-ATCT
* *
17737042 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGG-TATATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-GGCTA-ATCT
* *
17737086 TATCTCCCTAAGCAGTAGTGGAGCAGATCG--CA-TC-AAGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGCTAA-TCT
** ** * *
17737126 TATCTCCCTAAGCAGTAGTGGAATAGA-CAGAAGAAACCAATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATC-GAAGAGGCTAATCT
* * * * *
17737169 TATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTG-TAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-GGCTA-ATCT
* * *
17737213 TATCTCCCTAAGCAGTAGTGGAGCAGGTCG--CA-TC-AAGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGCTAA-TCT
** * *
17737253 TATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAAGAAACAAATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATC-GAAGAGGCTAATCT
* * * * * * * *
17737296 TATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTG-TAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-GGCTA-ATCT
* * *
17737340 TATCTCCCTAAGCAGTAGTGGATCAGATCG--CA-TC-AAGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGCTAA-TCT
* ** * *
17737380 TATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGCTAATCT
* * * * * * * *
17737423 TATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTG-TAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-GGCTA-ATCT
* * * *
17737467 TATCTCCCTAAGCAGTAGTGGAGTAGATCG--CA-TCAAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGCTAATCT
* *
17737507 TATCTCCCTAAGCAGTAGTGGAGCAGATC--ACA-TC-AAGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGCTAA-TCT
* ** * *
17737547 TATCTCCCTAAGCAGTAGTGGAGTAGA-CAGAAGAAACCAATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATC-GAAGAGGCTAATCT
* * * * * * *
17737590 TATCTCACTGAGCAGCAGTGGAGTAGGTTGAAGATTG-TAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-GGCTA-ATCT
* *
17737634 TATCTCCCTAAGCAGTAGTGGAGCAGATCG--CA-TC-AAGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGCTAA-TCT
** * *
17737674 TATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAAGAAACAAATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATC-GAAGAGGCTAATCT
* * * * * * * *
17737717 TATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTG-TAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-GGCTA-ATCT
* *
17737761 TATCTCCCTAAGCAGTAGTGGAGCAGATCG--CA-TC-AAGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGCTAA-TCT
* * ** * *
17737801 TATCTTCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGCTAATCT
* * * * * * * * *
17737844 TATCTCCCTGAGTAGCAGTGAAGTAGGTTGTAGATTG-TAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-GGCTA-ATCT
* ** * * * *
17737888 TATCTCCCTAAGCGGTCCCT-AAGCAGATC--ACA-TCAAATCT
1 TATCTCCCTAAGCAGT-AGTGGAGCAGATCGAAGAGGCTAATCT
* * *
17737928 TATCTCCCTAAGCAGTAGTGGAGTAGATCG--CA-TC-AAGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGCTAA-TCT
* ** * *
17737968 TATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGCTAATCT
* * * * * * * *
17738011 TATCTCCTTGAGTAGCAGTGGAGTAGGTTGAAGATTG-TAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-GGCTA-ATCT
* *
17738055 TATCTCCCTAAGCAGTAGTGGAGCAGATCG--CA-TC-AAGTCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGCTAA-TCT
* * ** * *
17738095 TATCTCCCTAAGTAGTAGTAGAGCAGA-CAGAAGAAACCAATCA
1 TATCTCCCTAAGCAGTAGTGGAGCAGATC-GAAGAGGCTAATCT
* * * * * *
17738138 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTG-TAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-GGCTA-ATCT
*
17738182 TATCTCCCTAAGCAGTAGTGGAGTAGATCG
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCG
17738212 CATCAAATCT
Statistics
Matches: 1370, Mismatches: 360, Indels: 192
0.71 0.19 0.10
Matches are distributed among these distances:
39 16 0.01
40 313 0.23
41 2 0.00
42 18 0.01
43 390 0.28
44 612 0.45
45 19 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (43 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAGGCTAATCT
Found at i:17736502 original size:131 final size:131
Alignment explanation
Indices: 17736337--17737147 Score: 696
Period size: 131 Copynumber: 6.2 Consensus size: 131
17736327 CATCATATCA
* * *
17736337 AGTCCTATCTCCCTAAGAAGTAGTGGAGTAGGTCAAAGATTGTAGATATTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATATTATCTCCCTAAGCAGT
* * * * *
17736402 AGTGGAGCAGATCGAATACGGCGAATCTTATCTTCCTAAGTAGTAGTGAAGCAGATTTAAGCCAC
66 AGTGGAGCAGATCAAAGACGACGAATCTTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCAC
17736467 C
131 C
*
17736468 AGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATTTTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATATTATCTCCCTAAGCAGT
* * * *
17736533 AGTGGAGCAAATCGAAGACGGCGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCAC
66 AGTGGAGCAGATCAAAGACGACGAATCTTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCAC
*
17736598 T
131 C
* * * * ** * ** * *
17736599 AG-CCTTATCTCCCTGAGCAGCAGTGGAGTAGGTCAAAAATTTTAGATCTTGCCTTCCTGTA-CT
1 AGTCC-TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATATTATCTCCCT-AAGC-
* * * * ** * * * * * * *
17736662 GGCAGTGAAGCAGATCAAA-A-GCACCAGCCTTATCTCCCTGAA-CGGCAGTGGAGTAGGTTGAG
63 AGTAGTGGAGCAGATCAAAGACG-ACGAATCTTATCTCCCT-AAGCAGTAGTGAAGCAGATTTAA
****
17736724 GATTGC
126 GCCACC
* * * * * * *
17736730 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGG-CGAATCTTATCTTCCTAAGCA
1 AG-TCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAG-ATATTATCTCCCTAAGCA
* ** * * * * * * ** **
17736794 GTAGTGAAGCAGATTTAAG-CCACCAGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGAT
64 GTAGTGGAGCAGATCAAAGACGACGAATCTTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCC
***
17736858 GGT
129 ACC
* * * *
17736861 AGATCATATCTCCCAAAGCAGTAGTGGAGTAGGTCAAAGATGGTAGATATTATCTCCTTAAGCAG
1 AG-TCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATATTATCTCCCTAAGCAG
**
17736926 TAGTGGAGCAGATCAAAGACGACGAATCTTATCTTTCTAAGCAGTAGTGAAGCAGATTTAAGCCA
65 TAGTGGAGCAGATCAAAGACGACGAATCTTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCA
17736991 CC
130 CC
** *
17736993 AGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTTGAAGATAGTAGATCA-TATCTCCCTAAGCAG
1 AGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGAT-ATTATCTCCCTAAGCAG
* * * *
17737057 TAGTGGAGCAGGTCAAAGATG--GTATATCTTATCTCCCTAAGCAGTAGTGGAGCAGA--T-CG-
65 TAGTGGAGCAGATCAAAGACGACG-A-ATCTTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGC
*
17737116 CATCA
128 CA-CC
*
17737121 AGTCTTATCTCCCTAAGCAGTAGTGGA
1 AGTCCTATCTCCCTAAGCAGTAGTGGA
17737148 ATAGACAGAA
Statistics
Matches: 550, Mismatches: 112, Indels: 39
0.78 0.16 0.06
Matches are distributed among these distances:
127 2 0.00
128 28 0.05
129 2 0.00
130 6 0.01
131 417 0.76
132 94 0.17
133 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (131 bp):
AGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATATTATCTCCCTAAGCAGT
AGTGGAGCAGATCAAAGACGACGAATCTTATCTCCCTAAGCAGTAGTGAAGCAGATTTAAGCCAC
C
Found at i:17736873 original size:175 final size:175
Alignment explanation
Indices: 17736342--17738080 Score: 1019
Period size: 167 Copynumber: 10.1 Consensus size: 175
17736332 TATCAAGTCC
* * * * *
17736342 TATCTCCCTAAGAAGTAGTGGAGTAGGTCAAAGATTGTAGATATTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGCAGATCTTATCTCCCTAAGCAGTAGTGG
* * *
17736407 AGCAGATCGAATACGGCGAATCTTATCTTCCTAAGTAGTAGTGAAGCAGATTTAAGCCACCAGTC
66 AGCAGATCGAAGACGACGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
* * *
17736472 CTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATTT
131 CTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATAGTAGATCT
** * * *
17736517 TATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGC-GAATCTTATCTTCCTAAGCAGTAGTG
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGCAG-ATCTTATCTCCCTAAGCAGTAGTG
* ** * * ** * * * * * * ** ******
17736581 AAGCAGATTTAAG-CCACTAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTCAAAAATTTTAGA
65 GAGCAGATCGAAGACGACGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAG-
* ** * * * * * * * * *
17736645 TCTTGCCTTCCTGTA-CTGGCAGTGAAGCAGATC-AA-A-AGCACCAGCCT
129 TCCTATCTCCCT-AAGC-AGTAGTGGAGCAGGTCGAAGATAGTA-GA-TCT
* * * ** * *
17736692 TATCTCCCTGAA-CGGCAGTGGAGTAGGTTGAGGATTGCAGATCTTATCTCCCTAAGCAGTAGTG
1 TATCTCCCT-AAGCAGTAGTGGAGCAGGTCAAAGATGGCAGATCTTATCTCCCTAAGCAGTAGTG
*
17736756 GAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGT
65 GAGCAGATCGAAGACGACGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGT
* *
17736821 CCTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGATCA
130 CCTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATAGTAGATCT
* * * * *
17736867 TATCTCCCAAAGCAGTAGTGGAGTAGGTCAAAGATGGTAGATATTATCTCCTTAAGCAGTAGTGG
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGCAGATCTTATCTCCCTAAGCAGTAGTGG
* *
17736932 AGCAGATCAAAGACGACGAATCTTATCTTTCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
66 AGCAGATCGAAGACGACGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
* *
17736997 CTATCTCCCTAAGCAGTAGTGGAGCAGGTTGAAGATAGTAGATCA
131 CTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATAGTAGATCT
* *
17737042 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTATATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGCAGATCTTATCTCCCTAAGCAGTAGTGG
* * * * * *** ** *
17737107 AGCAGATCGCA-TC-A--AGTCTTATCTCCCTAAGCAGTAGTGGAA-TAGACAGAAGAAACCAAT
66 AGCAGATCGAAGACGACGAATCTTATCTTCCTAAGCAGTAGT-GAAGCAGATTTAAGCCACCAGT
* * * *
17737167 CCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCT
130 CCTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATAGTAGATCT
17737213 TATCTCCCTAAGCAGTAGTGGAGCAGGTC---GCAT--CA-AGTCTTATCTCCCTAAGCAGTAGT
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAG-ATGGCAGA-TCTTATCTCCCTAAGCAGTAGT
* * * * * * * * * * *****
17737272 GGAGCAGA-CAGAAGA-AACAAATCCTATC-TCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGT
64 GGAGCAGATC-GAAGACGACGAATCTTATCTTC-CTAAGCAGTAGTGAAGCAGATTTAAGCCACC
* * * *
17737334 AGATCTTATCTCCCTAAGCAGTAGTGGATCAGATCG--CATCA--AG-TCT
127 AG-TCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGAT-AGTAGATCT
* *** * * * * *
17737380 TATCTCCCTAAGCAGTAGTGGAGCAGAT-AGAAGAAACCA-ATCCTATCTCTCTGAGTAGCAGTG
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCA-AAGATGGCAGATCTTATCTCCCTAAGCAGTAGTG
* * * * * * * * *
17737443 GAGTAGGTTGAAGATTGTA-G-ATCTTATCTCCCTAAGCAGTAGTGGAGTAGA--T-CG-CATCA
65 GAGCAGATCGAAGA-CG-ACGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCA-CC
* * * *
17737502 AATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC--ACATCA--AG-TCT
127 AGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGAT-AGTAGATCT
* * *** * * * *
17737547 TATCTCCCTAAGCAGTAGTGGAGTA-GACAGAAGAAACCA-ATCCTATCTCACTGAGCAGCAGTG
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCA-AAGATGGCAGATCTTATCTCCCTAAGCAGTAGTG
* * * * * * * *
17737610 GAGTAGGTTGAAGATTGTA-G-ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA--T-CG-CATCA
65 GAGCAGATCGAAGA-CG-ACGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCA-CC
* * ** * *
17737669 AGTCTTATCTCCCTAAGCAGTAGTGGAGCA-GACAGAAGA-AACAAATCC
127 AGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTC-GAAGATAGTAGATCT
* * * * * ** * *
17737717 TATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGCAGATCTTATCTCCCTAAGCAGTAGTGG
* * * * ** ** *
17737782 AGCAGATCGCA-TC-A--AGTCTTATCTTCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATC
66 AGCAGATCGAAGACGACGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
* * * * * * * *
17737843 CTATCTCCCTGAGTAGCAGTGAAGTAGGTTGTAGATTGTAGATCT
131 CTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATAGTAGATCT
* ** * * * *
17737888 TATCTCCCTAAGCGGTCCCT-AAGCAGATC--ACAT--CAAATCTTATCTCCCTAAGCAGTAGTG
1 TATCTCCCTAAGCAGT-AGTGGAGCAGGTCAAAGATGGCAGATCTTATCTCCCTAAGCAGTAGTG
* * * * * * ** ** *
17737948 GAGTAGATCGCA-TC-A--AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAAT
65 GAGCAGATCGAAGACGACGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGT
* * * * * * *
17738009 CCTATCTCCTTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCT
130 CCTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATAGTAGATCT
17738055 TATCTCCCTAAGCAGTAGTGGAGCAG
1 TATCTCCCTAAGCAGTAGTGGAGCAG
17738081 ATCGCATCAA
Statistics
Matches: 1247, Mismatches: 260, Indels: 122
0.77 0.16 0.07
Matches are distributed among these distances:
166 4 0.00
167 426 0.34
168 6 0.00
169 14 0.01
170 111 0.09
171 207 0.17
172 5 0.00
173 4 0.00
174 49 0.04
175 370 0.30
176 49 0.04
177 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (175 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGCAGATCTTATCTCCCTAAGCAGTAGTGG
AGCAGATCGAAGACGACGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTC
CTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATAGTAGATCT
Found at i:17736916 original size:219 final size:216
Alignment explanation
Indices: 17736386--17737114 Score: 605
Period size: 219 Copynumber: 3.3 Consensus size: 216
17736376 TTGTAGATAT
* * * * * * * *
17736386 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAATACGG-CGAATCTTATCTTCCTAAGTAGTAGTG
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAG-ATCTTATCTCCCAAAGCAGTAGTG
* ** * * * *
17736450 AAGCAGAT-TTAAGCCACCAGTC-CTATCTCCCT-AAGCAGTAGTGGAGCAGGTCAAAGATGGTA
65 GAGCAGATCAAAAG-CACCAG-CATTATCT-CCTGAAGCAGCAGTGGAGCAGATCAAAGA-CG-A
* *
17736512 GATTTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGCGAATCTTATCTTCCTAAGCAGT
125 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAGT
17736577 AGTGAAGCAGATTTAAGCCACTAG-CC
190 AGTGAAGCAGATTTAAGCCACTAGTCC
* * * * ** ** *** * *
17736603 TTATCTCCCTGAGCAGCAGTGGAGTAGGTCAAAAATTTTAGATCTTGCCTTCCTGTA-CTGGCAG
1 -TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATCTTATC-TCCCAAAGC-AGTAG
* * * * * ** * *
17736667 TGAAGCAGATCAAAAGCACCAGCCTTATCTCCCTGAA-CGGCAGTGGAGTAGGTTGAGGATTGCA
63 TGGAGCAGATCAAAAGCACCAGCATTATCT-CCTGAAGCAGCAGTGGAGCAGATCAAAGA-CG-A
17736731 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAGT
125 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAGT
*
17736796 AGTGAAGCAGATTTAAGCCACCAGTCC
190 AGTGAAGCAGATTTAAGCCACTAGTCC
* *
17736823 TATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGATCATATCTCCCAAAGCAGTAGTGG
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATCTTATCTCCCAAAGCAGTAGTGG
* * ** * * *
17736888 AGTAGGTC-AAAG-ATGGTAGATATTATCTCCTTAAGCAGTAGTGGAGCAGATCAAAGACGACGA
66 AGCAGATCAAAAGCA--CCAG-CATTATCTCCTGAAGCAGCAGTGGAGCAGATCAAAGACGA-G-
** * ** ** * * * *
17736951 ATCTTATCTTTCTAAGCAGTAGTGAAGCAGATTTAAG-CCACCAGTCCTATCTCCCTAAGCAGTA
126 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAGTA
* * * ** * *
17737015 GTGGAGCAGGTTGAAGATAGTAGATCA
191 GTGAAGCAGATTTAAGCCACTAG-TCC
* *
17737042 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTATATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATCTTATCTCCCAAAGCAGTAGTGG
17737107 AGCAGATC
66 AGCAGATC
17737115 GCATCAAGTC
Statistics
Matches: 407, Mismatches: 89, Indels: 29
0.78 0.17 0.06
Matches are distributed among these distances:
216 1 0.00
217 5 0.01
218 96 0.24
219 298 0.73
220 7 0.02
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (216 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATCTTATCTCCCAAAGCAGTAGTGG
AGCAGATCAAAAGCACCAGCATTATCTCCTGAAGCAGCAGTGGAGCAGATCAAAGACGAGATCTT
ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAGTAGTGAA
GCAGATTTAAGCCACTAGTCC
Found at i:17737534 original size:127 final size:127
Alignment explanation
Indices: 17736993--17737534 Score: 823
Period size: 127 Copynumber: 4.3 Consensus size: 127
17736983 TTAAGCCACC
* * * * ** * * *
17736993 AGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTTGAAGATAGTAGATCATATCTCCCTAAGCAGT
1 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCA-ATCCTATCTCCCTGAGCAGC
* ** * *
17737058 AGTGGAGCAGGTCAAAGATGGTATATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCA
65 AGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCA
** * *
17737121 AGTCTTATCTCCCTAAGCAGTAGTGGAATAGACAGAAGAAACCAATCCTATCTCCCTGAGCAGTA
1 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCCTATCTCCCTGAGCAGCA
*
17737186 GTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGCATCA
66 GTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCA
* * * *
17737248 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAACAAATCCTATCTCTCTGAGTAGCA
1 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCCTATCTCCCTGAGCAGCA
*
17737313 GTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGATCAGATCGCATCA
66 GTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCA
* *
17737375 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCCTATCTCTCTGAGTAGCA
1 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCCTATCTCCCTGAGCAGCA
*
17737440 GTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCA
66 GTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCA
*
17737502 AATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
1 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
17737535 CACATCAAGT
Statistics
Matches: 384, Mismatches: 30, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
127 349 0.91
128 35 0.09
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (127 bp):
AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCCTATCTCCCTGAGCAGCA
GTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCA
Found at i:17737564 original size:127 final size:124
Alignment explanation
Indices: 17736998--17737823 Score: 712
Period size: 127 Copynumber: 6.5 Consensus size: 124
17736988 CCACCAGTCC
* * *
17736998 TATCTCCCTAAGCAGTAGTGGAGCAGGTTGAAGAT-AGTAGATCATATCTCCCTAAGCAGTAGTG
1 TATCTCCCTAAGCAGTAGTGGAGCA-GATCAA-ATCA--AG-TCCTATCTCCCTAAGCAGTAGTG
* ** * * * *
17737062 GAGCAGGTCAAAGATGGTATATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCT
61 GAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAAATCT
** * *
17737126 TATCTCCCTAAGCAGTAGTGGAATAGACAGAAGAAACCAA-TCCTATCTCCCTGAGCAGTAGTGG
1 TATCTCCCTAAGCAGTAGTGG---AG-CAGATCAAATCAAGTCCTATCTCCCTAAGCAGTAGTGG
* * *
17737190 AGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGCATCAAGTCT
62 AGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAAATCT
* * * * * *
17737253 TATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAAGAAACAAATCCTATCTCTCTGAGTAGCAGTGG
1 TATCTCCCTAAGCAGTAGTGGAGCAGATC---A-AATCAAGTCCTATCTCCCTAAGCAGTAGTGG
*
17737317 AGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGA-TCAGATCGCATCAAGTCT
62 AGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGT-AGATCGCATCAAATCT
* * * * * *
17737380 TATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAA-TCCTATCTCTCTGAGTAGCAGTGG
1 TATCTCCCTAAGCAGTAGTGGAGCAGAT----CAAATCAAGTCCTATCTCCCTAAGCAGTAGTGG
17737444 AGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAAATCT
62 AGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAAATCT
* *
17737507 TATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGTA
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGTCCTATCTCCCTAAGCAGTAGTGGAGTA
*** **** * * * * * * * * *
17737572 GACAGAAGAAACCA-ATCCTATCTCACTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCT
66 GGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCG--CA-T-CAAATCT
** * *
17737634 TATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCA
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGTCCTATCTCCCTAAGCAGTAGTGGAGTA
*** *** * * * * * * * * * * *
17737699 GACAGAAGA-AACAAATCCTATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCT
66 GGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCG--CA-T-CAAATCT
** * *
17737761 TATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTTCCTAAGCAGTAGTGGAG
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGTCCTATCTCCCTAAGCAGTAGTGGAG
17737824 CAGATAGAAG
Statistics
Matches: 624, Mismatches: 51, Indels: 47
0.86 0.07 0.07
Matches are distributed among these distances:
123 37 0.06
124 32 0.05
125 2 0.00
126 9 0.01
127 505 0.81
128 27 0.04
129 2 0.00
130 1 0.00
131 7 0.01
132 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (124 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGTCCTATCTCCCTAAGCAGTAGTGGAGTA
GGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAAATCT
Found at i:17737569 original size:294 final size:294
Alignment explanation
Indices: 17736692--17738121 Score: 1414
Period size: 294 Copynumber: 4.8 Consensus size: 294
17736682 GCACCAGCCT
* * * *
17736692 TATCTCCCTGAACGGCAGTGGAGTAGGTTGAGGATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGG
** * * ** ** *
17736757 AGCAGATCGAAGACGGCGAA-TCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGT
66 AGCAGATC---G-CATC-AAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAAT
* * * * * * * *
17736821 CCTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGATCATATCTCCCAAAGCAGTAGT
126 CCTATCTCCCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGT
* * * * * *
17736886 GGAGTAGGTCAAAG-ATGGTAGATATTATCTCCTTAAGCAGTAGTGGAGCAGATCAAAGACGACG
191 GGAGTAGATC---GCAT--CAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAA-TC-A--
* ** *** ** * *
17736950 AATCTTATCTTTCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAGTCC
247 AGTCTTATCTCCCTAAGCAGTAGTGAAGCAGACAGAAGAAACAAATCC
* * * * *
17736998 TATCTCCCTAAGCAGTAGTGGAGCAGGTTGAAGATAGTAGATCATATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGG
* * * * *
17737063 AGCAGGTCAAAG-ATGGTATA-TCTTATCTCCCTAAGCAGTAGTGGAGCAGAT---CG-CATCAA
66 AGCAGATC---GCAT--CA-AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAA
* * * * * *** **** * *
17737122 GTCTTATCTCCCTAAGCAGTAGTGGAATAGACAGAAGAAACCA-ATCCTATCTCCCTGAGCAGTA
125 -TCCTATCTCCCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTA
* * * * * * **
17737186 GTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGCATCAAGT
189 GTGGAGTAGATCG--CA-T-CAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGT
*
17737251 CTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAACAAATCC
250 CTTATCTCCCTAAGCAGTAGTGAAGCAGACAGAAGAAACAAATCC
* *
17737296 TATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGG
*
17737361 ATCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCCTAT
66 AGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCCTAT
*
17737426 CTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGT
131 CTCCCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGT
*
17737491 AGATCGCATCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCT
196 AGATCGCATCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGTCTTATCTCCCT
* * *
17737556 AAGCAGTAGTGGAGTAGACAGAAGAAACCAATCC
261 AAGCAGTAGTGAAGCAGACAGAAGAAACAAATCC
*
17737590 TATCTCACTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGG
* *
17737655 AGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAACAAATCCTAT
66 AGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCCTAT
* *
17737720 CTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGC
131 CTCCCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGT
* * * * *
17737785 AGATCGCATCAAGTCTTATCTTCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAA-TCCTATCT
196 AGATCGCATCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT----CAAATCAAGTCTTATCT
* * * * *** * *** * *
17737849 CCCTGAGTAGCAGTGAAGTAGGTTGTAGATTGTAGATCT
257 CCCTAAGCAGTAGTGAAGCAGACAGAAGA-AACAAATCC
* * ** * * * * * * *
17737888 TATCTCCCTAAGCGGTCCCT-AAGCA-GAT-CACA-T-CAAATCTTATCTCCCTAAGCAGTAGTG
1 TATCTCCCTGAGCAG-CAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTG
*
17737948 GAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCCTA
65 GAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCCTA
*
17738013 TCTCCTTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAG
130 TCTCCCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAG
* * * *
17738078 CAGATCGCATCAAGTCTTATCTCCCTAAGTAGTAGTAGAGCAGA
195 TAGATCGCATCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
17738122 CAGAAGAAAC
Statistics
Matches: 970, Mismatches: 133, Indels: 54
0.84 0.11 0.05
Matches are distributed among these distances:
293 1 0.00
294 538 0.55
295 3 0.00
296 5 0.01
297 60 0.06
298 158 0.16
299 3 0.00
300 1 0.00
301 1 0.00
302 69 0.07
303 34 0.04
305 1 0.00
306 96 0.10
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (294 bp):
TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGG
AGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCCTAT
CTCCCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGT
AGATCGCATCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGTCTTATCTCCCT
AAGCAGTAGTGAAGCAGACAGAAGAAACAAATCC
Found at i:17737589 original size:421 final size:421
Alignment explanation
Indices: 17736776--17738227 Score: 2097
Period size: 421 Copynumber: 3.4 Consensus size: 421
17736766 AAGACGGCGA
* * * * *
17736776 ATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCA-CCAGTCCTATCTCCCTAAGCAGTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA--T-CG-CATCAAGTCTTATCTCCCTAAGCAGTA
* *** * * * ** * * ** *
17736840 GTGGAGCAGGTC-GAAGATGGTAGATCATATCTCCCAAAGCAGTAGTGGAGTAGGTCAAAGATGG
62 GTGGAGCA-GACAGAAGA-AACAAATCCTATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTG
* * **
17736904 TAGATATTATCTCCTTAAGCAGTAGTGGAGCAGATCAAAGACGA-CGAA-TCTTATCTTTCTAAG
125 TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---G-C-ATC-AAGTCTTATCTCCCTAAG
* ** ** * * * * *
17736967 CAGTAGTGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTTGAAGA
184 CAGTAGTGGAGCAGATAGAAGAAACCAATCCTATCTCCCTGAGTAGCAGTGGAGTAGGTTGAAGA
* * * * *
17737032 TAGTAGATCATATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAG-ATGGTATATCTTATCTCCCTA
249 TTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---GCAT--CAAATCTTATCTCCCTA
*
17737096 AGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAATAGACAGAAGAA
309 AGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGTAGACAGAAGAA
*
17737161 ACCAATCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTGTAG
374 ACCAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAG
*
17737209 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
17737274 AGCAGACAGAAGAAACAAATCCTATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATC
66 AGCAGACAGAAGAAACAAATCCTATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATC
*
17737339 TTATCTCCCTAAGCAGTAGTGGATCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGC
131 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGC
*
17737404 AGATAGAAGAAACCAATCCTATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTA
196 AGATAGAAGAAACCAATCCTATCTCCCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTA
*
17737469 TCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
261 TCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
* *
17737534 TCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGTAGACAGAAGAAACCAATCCTATCTCACT
326 TCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGTAGACAGAAGAAACCAATCCTATCTCCCT
17737599 GAGCAGCAGTGGAGTAGGTTGAAGATTGTAG
391 GAGCAGCAGTGGAGTAGGTTGAAGATTGTAG
17737630 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
17737695 AGCAGACAGAAGAAACAAATCCTATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATC
66 AGCAGACAGAAGAAACAAATCCTATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATC
*
17737760 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTTCCTAAGCAGTAGTGGAGC
131 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGC
* *
17737825 AGATAGAAGAAACCAATCCTATCTCCCTGAGTAGCAGTGAAGTAGGTTGTAGATTGTAGATCTTA
196 AGATAGAAGAAACCAATCCTATCTCCCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTA
* ** * * *
17737890 TCTCCCTAAGCGGTCCCT-AAGCAGATCACATCAAATCTTATCTCCCTAAGCAGTAGTGGAGTAG
261 TCTCCCTAAGCAGT-AGTGGAGCAGATCGCATCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAG
* * *
17737954 ATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCAATCCTATCTCCT
325 ATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGTAGACAGAAGAAACCAATCCTATCTCCC
*
17738019 TGAGTAGCAGTGGAGTAGGTTGAAGATTGTAG
390 TGAGCAGCAGTGGAGTAGGTTGAAGATTGTAG
* *
17738051 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGTAGTAGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
* * * *
17738116 AGCAGACAGAAGAAACCAATCATATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATC
66 AGCAGACAGAAGAAACAAATCCTATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATC
* *
17738181 TTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAAATCTTATCTC
131 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTC
17738228 TCTGAAGTTA
Statistics
Matches: 939, Mismatches: 74, Indels: 24
0.91 0.07 0.02
Matches are distributed among these distances:
421 692 0.74
422 2 0.00
423 2 0.00
424 3 0.00
425 104 0.11
426 1 0.00
429 70 0.07
430 36 0.04
431 1 0.00
433 28 0.03
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (421 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
AGCAGACAGAAGAAACAAATCCTATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATC
TTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGC
AGATAGAAGAAACCAATCCTATCTCCCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTA
TCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
TCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGTAGACAGAAGAAACCAATCCTATCTCCCT
GAGCAGCAGTGGAGTAGGTTGAAGATTGTAG
Found at i:17737824 original size:127 final size:127
Alignment explanation
Indices: 17737503--17737950 Score: 736
Period size: 127 Copynumber: 3.5 Consensus size: 127
17737493 ATCGCATCAA
17737503 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGG
* *
17737568 AGTAGACAGAAGAAACCAATCCTATCTCACTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAG
66 AGCAGACAGAAGAAACCAATCCTATCTCACTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAG
*
17737630 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGG
* *
17737695 AGCAGACAGAAGAAACAAATCCTATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAG
66 AGCAGACAGAAGAAACCAATCCTATCTCACTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAG
* *
17737757 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTTCCTAAGCAGTAGTGG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGG
* * * *
17737822 AGCAGATAGAAGAAACCAATCCTATCTCCCTGAGTAGCAGTGAAGTAGGTTGTAGATTGTAG
66 AGCAGACAGAAGAAACCAATCCTATCTCACTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAG
* ** * *
17737884 ATCTTATCTCCCTAAGCGGTCCCT-AAGCAGATCACATCAAATCTTATCTCCCTAAGCAGTAGTG
1 ATCTTATCTCCCTAAGCAGT-AGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTG
17737948 GAG
65 GAG
17737951 TAGATCGCAT
Statistics
Matches: 302, Mismatches: 18, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
127 301 1.00
128 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (127 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGG
AGCAGACAGAAGAAACCAATCCTATCTCACTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAG
Found at i:17737930 original size:167 final size:167
Alignment explanation
Indices: 17737757--17738121 Score: 597
Period size: 167 Copynumber: 2.2 Consensus size: 167
17737747 AAGATTGTAG
*
17737757 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTTCCTAAGCAGTAGTGG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
*
17737822 AGCAGATAGAAGAAACCAATCCTATCTCCCTGAGTAGCAGTGAAGTAGGTTGTAGATTGTAGATC
66 AGCAGATAGAAGAAACCAATCCTATCTCCCTGAGTAGCAGTGAAGTAGGTTGAAGATTGTAGATC
* *
17737887 TTATCTCCCTAAGCGGTCCCT-AAGCAGATCACATCAA
131 TTATCTCCCTAAGCAGT-ACTGAAGCAGATCACATCAA
*
17737924 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
* *
17737989 AGCAGATAGAAGAAACCAATCCTATCTCCTTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATC
66 AGCAGATAGAAGAAACCAATCCTATCTCCCTGAGTAGCAGTGAAGTAGGTTGAAGATTGTAGATC
* * *
17738054 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAA
131 TTATCTCCCTAAGCAGTACTGAAGCAGATCACATCAA
* * *
17738091 GTCTTATCTCCCTAAGTAGTAGTAGAGCAGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
17738122 CAGAAGAAAC
Statistics
Matches: 183, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
166 1 0.01
167 182 0.99
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (167 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
AGCAGATAGAAGAAACCAATCCTATCTCCCTGAGTAGCAGTGAAGTAGGTTGAAGATTGTAGATC
TTATCTCCCTAAGCAGTACTGAAGCAGATCACATCAA
Found at i:17738055 original size:127 final size:127
Alignment explanation
Indices: 17737924--17738227 Score: 536
Period size: 127 Copynumber: 2.4 Consensus size: 127
17737914 ATCACATCAA
*
17737924 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTAG
* * * *
17737989 AGCAGATAGAAGAAACCAATCCTATCTCCTTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAG
66 AGCAGACAGAAGAAACCAATCATATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAG
* *
17738051 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGTAGTAGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTAG
17738116 AGCAGACAGAAGAAACCAATCATATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAG
66 AGCAGACAGAAGAAACCAATCATATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAG
*
17738178 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAAATCTTATCTC
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAAGTCTTATCTC
17738228 TCTGAAGTTA
Statistics
Matches: 168, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
127 168 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (127 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTAG
AGCAGACAGAAGAAACCAATCATATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAG
Found at i:17738058 original size:254 final size:251
Alignment explanation
Indices: 17737507--17738082 Score: 672
Period size: 254 Copynumber: 2.3 Consensus size: 251
17737497 CATCAAATCT
* * *
17737507 TATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGTA
1 TATCTCCCTAAGCAGCAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCA
* *
17737572 GACAGAAGAAACCAATCCTATCTCACTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTAT
66 GATAGAAGAAACCAATCCTATCTCACTGAGCAGCAGTGAAGTAGGTTGAAGATTGTAGATCTTAT
* * * *
17737637 CTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGAC
131 CTCCCTAAGCAGTACTGAAGCAGATCACATCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGAC
* * * * * * **** *
17737702 AGAAGAAACAAATCCTATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCT
196 ---AGAAACAAATCCTATCTCCCTAAGCAGCAGTGGAGCAGATAGAAGAAACCAGATCC
* *
17737761 TATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTTCCTAAGCAGTAGTGGAGCA
1 TATCTCCCTAAGCAGCAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCA
* * *
17737826 GATAGAAGAAACCAATCCTATCTCCCTGAGTAGCAGTGAAGTAGGTTGTAGATTGTAGATCTTAT
66 GATAGAAGAAACCAATCCTATCTCACTGAGCAGCAGTGAAGTAGGTTGAAGATTGTAGATCTTAT
* * *
17737891 CTCCCTAAGCGGTCCCT-AAGCAGATCACATCAAATCTTATCTCCCTAAGCAGTAGTGGAGTAGA
131 CTCCCTAAGCAGT-ACTGAAGCAGATCACATCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
* * * * *
17737955 TC-GCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGAAGAAACCA-ATCC
195 -CAGAAACAAATCCTATCTCCCTAAGCAGCAGTGGAGCAGATAGAAGAAACCAGATCC
* * * * * * * **
17738011 TATCTCCTTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTAAGCAGCAGTGGAGCAGATCG--CA-TCAAG-TCTTATCTCCCTAAGCAGTAGTGG
17738076 AGCAGAT
62 AGCAGAT
17738083 CGCATCAAGT
Statistics
Matches: 274, Mismatches: 42, Indels: 12
0.84 0.13 0.04
Matches are distributed among these distances:
250 26 0.09
251 35 0.13
252 1 0.00
253 3 0.01
254 207 0.76
255 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (251 bp):
TATCTCCCTAAGCAGCAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCA
GATAGAAGAAACCAATCCTATCTCACTGAGCAGCAGTGAAGTAGGTTGAAGATTGTAGATCTTAT
CTCCCTAAGCAGTACTGAAGCAGATCACATCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGAC
AGAAACAAATCCTATCTCCCTAAGCAGCAGTGGAGCAGATAGAAGAAACCAGATCC
Found at i:17738218 original size:294 final size:293
Alignment explanation
Indices: 17737336--17738271 Score: 1292
Period size: 294 Copynumber: 3.2 Consensus size: 293
17737326 AAGATTGTAG
*
17737336 ATCTTATCTCCCTAAGCAGTAGTGGATCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
17737401 AGCAGATAGAAGAAACCAATCCTATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATC
66 AGCAGATAGAAGAAACCAATCCTATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATC
* *
17737466 TTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAAATCTTATCTCCCTAAGCAGTAGTG-G-A
131 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGAGCA
** * * * * * *** **** *
17737529 G-CAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGTAGACAGAAGAAACCA-ATCCTA
196 GACAGAAGAAACCAA-TCATATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTA
* * * * * * * *
17737592 TCTCACTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAG
260 TCTCCCTAAGCAGTAGTGGAGTAGATCG--CA-T-CAA
17737630 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
* *
17737695 AGCAGACAGAAGAAACAAATCCTATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATC
66 AGCAGATAGAAGAAACCAATCCTATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATC
*
17737760 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTTCCTAAGCAGTAGTGGAGC
131 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGT-GAGC
* * * * *
17737825 AGATAGAAGAAACCAATCCTATCTCCCTGAGTAGCAGTGAAGTAGGTTGTAGATTGTAGATCTTA
195 AGACAGAAGAAACCAATCATATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTA
* ** * * *
17737890 TCTCCCTAAGCGGTCCCT-AAGCAGATCACATCAA
260 TCTCCCTAAGCAGT-AGTGGAGTAGATCGCATCAA
*
17737924 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
17737989 AGCAGATAGAAGAAACCAATCCTATCTC-CTTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGAT
66 AGCAGATAGAAGAAACCAATCCTATCTCTC-TGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGAT
*
17738053 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGTAGTAGTAGAG
130 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGT-GAG
17738118 CAGACAGAAGAAACCAATCATATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTT
194 CAGACAGAAGAAACCAATCATATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTT
17738183 ATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAA
259 ATCTCCCTAAGCAGTAGTGGAGTAGATCGCATCAA
* * * * * *
17738218 ATCTTATCTCTCTGAAGTTA-CAGTAGAGCAAATCGCATCCAGTCTTATCTCCCT
1 ATCTTATCTCCCT-AAG-CAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCT
17738272 GAAGTTGCAG
Statistics
Matches: 569, Mismatches: 63, Indels: 19
0.87 0.10 0.03
Matches are distributed among these distances:
293 2 0.00
294 470 0.83
295 34 0.06
296 3 0.01
297 31 0.05
298 28 0.05
299 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (293 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGG
AGCAGATAGAAGAAACCAATCCTATCTCTCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATC
TTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGAGCA
GACAGAAGAAACCAATCATATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTAT
CTCCCTAAGCAGTAGTGGAGTAGATCGCATCAA
Found at i:17739980 original size:12 final size:12
Alignment explanation
Indices: 17739965--17739995 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
17739955 ATTATAACTA
17739965 TTTATATACATC
1 TTTATATACATC
*
17739977 TTTATATATATC
1 TTTATATACATC
17739989 TTTATAT
1 TTTATAT
17739996 CTTATTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.58
Consensus pattern (12 bp):
TTTATATACATC
Found at i:17740863 original size:105 final size:105
Alignment explanation
Indices: 17740662--17740873 Score: 286
Period size: 105 Copynumber: 2.0 Consensus size: 105
17740652 AAAGGAAAAT
* * * * *
17740662 TTTTCTAAATAAGACAATATTTTGCGTTTGGAAATCCGAGAAATCATGCCCTAATGTGCTGGGTT
1 TTTTCAAAATAAGACAATATTTTGCATTTGGAAATCCGAGAAAACATGCCCTAACGTGCTAGGTT
*
17740727 TCGATTTTCGTTCGACCAAATAGCTAAAATATCCTTTTAAA
66 TCGATTTTCGTTCGACCAAATAGCT-AAATATCCTCTTAAA
* * *
17740768 TTTTCAAAAT-AGGCAATATTTTGCATTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTAGGTT
1 TTTTCAAAATAAGACAATATTTTGCATTTGGAAATCCGAGAAAACATGCCCTAACGTGCTAGGTT
17740832 TCGATTTCTCGTT-GAACCAAATAGCCT-AATATCCTCTTAAA
66 TCGATTT-TCGTTCG-ACCAAATAG-CTAAATATCCTCTTAAA
17740873 T
1 T
17740874 CTCAATCCAT
Statistics
Matches: 94, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
105 69 0.73
106 23 0.24
107 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (105 bp):
TTTTCAAAATAAGACAATATTTTGCATTTGGAAATCCGAGAAAACATGCCCTAACGTGCTAGGTT
TCGATTTTCGTTCGACCAAATAGCTAAATATCCTCTTAAA
Found at i:17741851 original size:29 final size:30
Alignment explanation
Indices: 17741818--17741874 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
17741808 TCCGAGCCTT
*
17741818 GGGGCAAAA-TGTAATTATGTAAAAGTTTA
1 GGGGCAAAATTGTAATTATGAAAAAGTTTA
*
17741847 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAATTGTAATTATGAAAAAGTT
17741875 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 9 0.36
30 16 0.64
ACGTcount: A:0.40, C:0.04, G:0.25, T:0.32
Consensus pattern (30 bp):
GGGGCAAAATTGTAATTATGAAAAAGTTTA
Found at i:17742104 original size:13 final size:13
Alignment explanation
Indices: 17742086--17742117 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
17742076 TTTCCAGCAA
17742086 TTATGAATTTATT
1 TTATGAATTTATT
17742099 TTATGAATTTATT
1 TTATGAATTTATT
*
17742112 TGATGA
1 TTATGA
17742118 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:17742341 original size:50 final size:50
Alignment explanation
Indices: 17742212--17742461 Score: 329
Period size: 50 Copynumber: 4.8 Consensus size: 50
17742202 ATTTGGGTAA
17742212 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC----GA-CATG
* * *
17742268 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATG
*
17742319 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATG
* * * * *
17742369 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACCAACATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATG
* *
17742419 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
17742462 TGTTATTATC
Statistics
Matches: 175, Mismatches: 17, Indels: 9
0.87 0.08 0.04
Matches are distributed among these distances:
50 92 0.53
51 39 0.22
52 2 0.01
56 4 0.02
57 38 0.22
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.21
Consensus pattern (50 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATG
Found at i:17742450 original size:101 final size:104
Alignment explanation
Indices: 17742216--17742462 Score: 331
Period size: 101 Copynumber: 2.4 Consensus size: 104
17742206 GGGTAAAGAG
*
17742216 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAACATCCCATG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAACATCCCATA
* * * * *
17742281 TAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
63 TAAGACCATGTCTGGGACATGGCATGGGCACCAACATGAGAC
* ** *
17742323 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC-GA-GATGAG-AGGTCCCCTATAA
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAACATCCCATATAA
17742384 GACCATGTCTGGGACATGGCATGGGCACCAACATGAGAAC
66 GACCATGTCTGGGACATGGCATGGGCACCAACATGAG-AC
*
17742424 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
17742463 GTTATTATCA
Statistics
Matches: 127, Mismatches: 11, Indels: 9
0.86 0.07 0.06
Matches are distributed among these distances:
100 42 0.33
101 43 0.34
102 2 0.02
106 2 0.02
107 38 0.30
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (104 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAACATCCCATATAA
GACCATGTCTGGGACATGGCATGGGCACCAACATGAGAC
Found at i:17748752 original size:20 final size:21
Alignment explanation
Indices: 17748723--17748761 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
17748713 TAAAATAAAG
17748723 TTTAAAATAATTTT-AAAAAA
1 TTTAAAATAATTTTCAAAAAA
*
17748743 TTTAATATAATTTTCAAAA
1 TTTAAAATAATTTTCAAAA
17748762 TTCAAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTAAAATAATTTTCAAAAAA
Found at i:17750797 original size:30 final size:30
Alignment explanation
Indices: 17750763--17750824 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
17750753 TTTAACAAGT
17750763 AAATGCCTCTAAAATAATAACAAAATTAAC
1 AAATGCCTCTAAAATAATAACAAAATTAAC
* *
17750793 AAATGTCTTTAAAATAATAACAAAATTAAC
1 AAATGCCTCTAAAATAATAACAAAATTAAC
17750823 AA
1 AA
17750825 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.58, C:0.13, G:0.03, T:0.26
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACAAAATTAAC
Found at i:17756019 original size:5 final size:5
Alignment explanation
Indices: 17756009--17756041 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
17755999 CTTTTTTCCA
17756009 CATCC CATCC CATCC CATCC CATCC CATCC CAT
1 CATCC CATCC CATCC CATCC CATCC CATCC CAT
17756042 ACCTTCACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.21, C:0.58, G:0.00, T:0.21
Consensus pattern (5 bp):
CATCC
Found at i:17766025 original size:12 final size:12
Alignment explanation
Indices: 17766008--17766038 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
17765998 CCTTCTGTTT
*
17766008 TATATATGTATA
1 TATATATCTATA
17766020 TATATATCTATA
1 TATATATCTATA
17766032 TATATAT
1 TATATAT
17766039 AATTAAGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (12 bp):
TATATATCTATA
Found at i:17766968 original size:5 final size:5
Alignment explanation
Indices: 17766958--17766985 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
17766948 TTTGTATGTA
17766958 ATTAT ATTAT ATTAT ATTAT ATTAT ATT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATT
17766986 TTATATTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
ATTAT
Found at i:17767082 original size:21 final size:20
Alignment explanation
Indices: 17767048--17767102 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 20
17767038 ACATTTTGTT
*
17767048 GCTATATATTTTTTAATAGGA
1 GCTA-ATATTTTTTAATAGAA
17767069 GCTAATATTGTTTTAATAGAA
1 GCTAATATT-TTTTAATAGAA
17767090 GCTAATATTTTTT
1 GCTAATATTTTTT
17767103 TATTTTTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 9 0.28
21 23 0.72
ACGTcount: A:0.33, C:0.05, G:0.13, T:0.49
Consensus pattern (20 bp):
GCTAATATTTTTTAATAGAA
Found at i:17776096 original size:21 final size:20
Alignment explanation
Indices: 17776056--17776100 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
17776046 ATTGATATTA
*
17776056 TAAAAATAAAAATATCAAAT
1 TAAAAATAAAAATATAAAAT
17776076 TAAAATATAAAAAT-TAAAAAT
1 TAAAA-ATAAAAATAT-AAAAT
17776097 TAAA
1 TAAA
17776101 TAAACAAGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (20 bp):
TAAAAATAAAAATATAAAAT
Found at i:17776100 original size:14 final size:14
Alignment explanation
Indices: 17776054--17776094 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
17776044 TTATTGATAT
*
17776054 TATAAAAATAAAAA
1 TATAAAAATTAAAA
*
17776068 TAT-CAAATTAAAA
1 TATAAAAATTAAAA
17776081 TATAAAAATTAAAA
1 TATAAAAATTAAAA
17776095 ATTAAATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (14 bp):
TATAAAAATTAAAA
Found at i:17776742 original size:19 final size:18
Alignment explanation
Indices: 17776718--17776758 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
17776708 AAATATGAAA
17776718 AAAATTCAAATTAAATTTT
1 AAAATTCAAATT-AATTTT
*
17776737 AAAATTCAAATTATTTTT
1 AAAATTCAAATTAATTTT
17776755 AAAA
1 AAAA
17776759 AAATATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
AAAATTCAAATTAATTTT
Found at i:17776769 original size:16 final size:15
Alignment explanation
Indices: 17776744--17776782 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 15
17776734 TTTAAAATTC
17776744 AAATTATTTTTAAAA
1 AAATTATTTTTAAAA
17776759 AAATATATTTTTAAAAA
1 AAAT-TATTTTT-AAAA
17776776 AAATTAT
1 AAATTAT
17776783 AAATTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.18
16 10 0.45
17 8 0.36
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
AAATTATTTTTAAAA
Found at i:17778713 original size:15 final size:16
Alignment explanation
Indices: 17778678--17778715 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
17778668 AACTCCCTTC
*
17778678 AAAATTTATAAAAATT
1 AAAATTAATAAAAATT
*
17778694 TAAATTAATAAAAA-T
1 AAAATTAATAAAAATT
17778709 AAAATTA
1 AAAATTA
17778716 TACTTTAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AAAATTAATAAAAATT
Found at i:17783320 original size:27 final size:27
Alignment explanation
Indices: 17783286--17783396 Score: 123
Period size: 27 Copynumber: 3.9 Consensus size: 27
17783276 CCAATGAATC
**
17783286 GGGGAATCAGCACACAGCAACCCCTTG
1 GGGGAATCAGCACTTAGCAACCCCTTG
*
17783313 GGGGAATCAGCACTTAGCAACCACCAATGAATA
1 GGGGAATCAGCACTTAGCAACC-CC--T---TG
* *
17783346 GGGGAATTAGCACTTAGCAACCCCTCG
1 GGGGAATCAGCACTTAGCAACCCCTTG
17783373 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
17783397 CTTTCACATT
Statistics
Matches: 71, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
27 43 0.61
28 2 0.03
30 2 0.03
32 2 0.03
33 22 0.31
ACGTcount: A:0.32, C:0.30, G:0.24, T:0.14
Consensus pattern (27 bp):
GGGGAATCAGCACTTAGCAACCCCTTG
Found at i:17783358 original size:60 final size:60
Alignment explanation
Indices: 17783262--17783394 Score: 221
Period size: 60 Copynumber: 2.2 Consensus size: 60
17783252 GGTGGATTCC
* *
17783262 GCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCA
1 GCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGGGAATCA
* **
17783322 GCACTTAGCAACCACCAATGAATAGGGGAATTAGCACTTAGCAACCCCTCGGGGGAATCA
1 GCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGGGAATCA
17783382 GCACTTAGCAACC
1 GCACTTAGCAACC
17783395 CCCTTTCACA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 68 1.00
ACGTcount: A:0.33, C:0.29, G:0.23, T:0.15
Consensus pattern (60 bp):
GCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGGGAATCA
Found at i:17783550 original size:102 final size:103
Alignment explanation
Indices: 17783315--17783573 Score: 421
Period size: 103 Copynumber: 2.5 Consensus size: 103
17783305 ACCCCTTGGG
* * * **
17783315 GGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATTAGCACTTAGCAACCCCTCGGGGGAAT
1 GGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAACACACAGCAACCCCTCGGGGGAAT
17783380 CAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGT
66 CAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGT
*
17783418 GGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAACACACAGCAACCCCTTGGGGGAAT
1 GGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAACACACAGCAACCCCTCGGGGGAAT
* * * *
17783483 CAGCACTTAGCAACCCTC-TTCACATTTCAGATGCGGT
66 CAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGT
17783520 GGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAACACACAGCAACCC
1 GGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAACACACAGCAACCC
17783574 ATTTATATGC
Statistics
Matches: 146, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
102 70 0.48
103 76 0.52
ACGTcount: A:0.34, C:0.29, G:0.20, T:0.18
Consensus pattern (103 bp):
GGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAACACACAGCAACCCCTCGGGGGAAT
CAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGT
Found at i:17784941 original size:35 final size:35
Alignment explanation
Indices: 17784882--17784948 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 35
17784872 AATCCCTTCA
* * *
17784882 AAACACACCAAGGGGCTCCAAAGTGCCAAGCCACC
1 AAACACACCAAAGAGCACCAAAGTGCCAAGCCACC
* *
17784917 AAACACACCAAAGAGCACCTAAGTGCTAAGCC
1 AAACACACCAAAGAGCACCAAAGTGCCAAGCC
17784949 TGAAGGCGTC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.40, C:0.34, G:0.18, T:0.07
Consensus pattern (35 bp):
AAACACACCAAAGAGCACCAAAGTGCCAAGCCACC
Found at i:17788363 original size:19 final size:19
Alignment explanation
Indices: 17788339--17788377 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
17788329 TTAGTGTTAG
17788339 TTAATTAAG-TTAAATTAAA
1 TTAATTAAGATT-AATTAAA
*
17788358 TTAATTTAGATTAATTAAA
1 TTAATTAAGATTAATTAAA
17788377 T
1 T
17788378 GTTAAACTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (19 bp):
TTAATTAAGATTAATTAAA
Found at i:17808045 original size:23 final size:23
Alignment explanation
Indices: 17808014--17808064 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
17808004 ACCTACTTTC
*
17808014 TTACTGTAGTAATTTTCAGGG-TA
1 TTACAGTAGTAATTTTC-GGGATA
17808037 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
17808060 TTACA
1 TTACA
17808065 AACACTCACC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 3 0.12
23 23 0.88
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:17809216 original size:169 final size:169
Alignment explanation
Indices: 17809029--17809339 Score: 417
Period size: 169 Copynumber: 1.8 Consensus size: 169
17809019 TAATTTTCTT
* * *
17809029 AAAAAATATAAAAAGATAAAAATATCATCACAATAGTAAAACTAATTTTAAATATGAA-AGAGTT
1 AAAAAATATAAAAAGATAAAAATATCATCACAATAATAAAACTAATTTTAAATAAGAAGAGA-CT
* * * * * * * *
17809093 AATTAGTAATTTAACCAATTGAATTGCTGTCACTTAACTCGTGTCACCAGACTCAGTAAACGACC
65 AATTAGTAATTTAACCAACTCAACTGCTGTCACTTAACTCATGACACAAAACTCAATAAACGACC
17809158 TAATATTAGTAGATATGTAATTTTGTTTTTGGTTTTCGTA
130 TAATATTAGTAGATATGTAATTTTGTTTTTGGTTTTCGTA
** * * * *
17809198 AAAAAATATGCAAAGATAAAAATTTCATCATAATAATATAACTTATTTTAAATAAGAAGAGACTA
1 AAAAAATATAAAAAGATAAAAATATCATCACAATAATAAAACTAATTTTAAATAAGAAGAGACTA
* * * *
17809263 ATTAGTAATTTAACCAACTCAGCTGGTGTCACTTAACTCATGACACAAAACTTAATAAACGACTT
66 ATTAGTAATTTAACCAACTCAACTGCTGTCACTTAACTCATGACACAAAACTCAATAAACGACCT
17809328 AATATTAGTAGA
131 AATATTAGTAGA
17809340 GATAAAAAGA
Statistics
Matches: 120, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
169 117 0.98
170 3 0.03
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.32
Consensus pattern (169 bp):
AAAAAATATAAAAAGATAAAAATATCATCACAATAATAAAACTAATTTTAAATAAGAAGAGACTA
ATTAGTAATTTAACCAACTCAACTGCTGTCACTTAACTCATGACACAAAACTCAATAAACGACCT
AATATTAGTAGATATGTAATTTTGTTTTTGGTTTTCGTA
Found at i:17812884 original size:26 final size:26
Alignment explanation
Indices: 17812855--17812909 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
17812845 ATTAGTCCAA
17812855 AATACTCGTGTAATAAAATTTAAAAG
1 AATACTCGTGTAATAAAATTTAAAAG
* *
17812881 AATATTCGTGTAATAAAATTTAAATG
1 AATACTCGTGTAATAAAATTTAAAAG
17812907 AAT
1 AAT
17812910 TTAAAACAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.49, C:0.05, G:0.11, T:0.35
Consensus pattern (26 bp):
AATACTCGTGTAATAAAATTTAAAAG
Found at i:17813289 original size:19 final size:19
Alignment explanation
Indices: 17813265--17813356 Score: 166
Period size: 19 Copynumber: 4.8 Consensus size: 19
17813255 AATCATATCT
17813265 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
17813284 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
17813303 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
17813322 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
17813341 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
17813357 CTTGAAGATT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 69 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:17813314 original size:38 final size:38
Alignment explanation
Indices: 17813242--17813356 Score: 185
Period size: 38 Copynumber: 2.9 Consensus size: 38
17813232 AAATTAAATC
*
17813242 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTAC-ATATCATA---TCTAAGATTGCATATCATA
17813284 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
17813322 TCTAAGATTACATATCATATCTAAGATTGCATATC
1 TCTAAGATTACATATCATATCTAAGATTGCATATC
17813357 CTTGAAGATT
Statistics
Matches: 72, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
38 54 0.75
41 7 0.10
42 11 0.15
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.37
Consensus pattern (38 bp):
TCTAAGATTACATATCATATCTAAGATTGCATATCATA
Found at i:17813960 original size:45 final size:45
Alignment explanation
Indices: 17813903--17814244 Score: 244
Period size: 45 Copynumber: 7.8 Consensus size: 45
17813893 TTTTTTATTT
* * *
17813903 AGTCTGCCCCACTGCAATTTCAGGGGGATAAGACTTGATTTCTTG
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTG
* *
17813948 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGCTTTCTTG
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTG
* * * * ** *
17813993 GGTTTGCTCCACTGTAACTTTAGGGAGATAAGACCCGA-TGC--G
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTG
* *
17814035 A-TCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTGTGA-TT-TT-
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGATTTCTTG
* ** * * * *
17814077 AATCCACTCCACTACAACTTCAGGGAGATAGGA-TT-ATTGGCTTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATT-TCTTG
* * *** *
17814121 AATCTGCTCCACTGCAACTTCAGGGGGATAAGA-TTCGCCATCTTC
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GATTTCTTG
* * * *
17814166 AGTCTGC-CTCACTACAACTTCA-GGAGGATAAGGCTTGCTTACTT-
1 AGTCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGATTTCTTG
*
17814210 AGTTTGCTCCACTGCAACTTCAGGGAGATAAGACT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT
17814245 ATATGCGATA
Statistics
Matches: 232, Mismatches: 48, Indels: 35
0.74 0.15 0.11
Matches are distributed among these distances:
40 21 0.09
41 8 0.03
42 6 0.03
43 6 0.03
44 81 0.35
45 108 0.47
46 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (45 bp):
AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTTCTTG
Found at i:17814316 original size:217 final size:218
Alignment explanation
Indices: 17813853--17814387 Score: 664
Period size: 217 Copynumber: 2.5 Consensus size: 218
17813843 ATTTCAGAGA
* * ** * *** * *
17813853 GATTCTAATCCACTCCACTACAACTTTAGGGAGATGGGATTTTTTTATTTAGTCTGCCCCACTGC
1 GATTTTAATCCACTCCACTACAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGC
* *** * *
17813918 AATTTCAGGGGGATAAGACTT-GATTTCTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGAC
66 AACTTCAGGGGGATAAGA-TTCGCCATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGAC
* * * * * *
17813982 TCGCTTTCTTGGGTTTGCTCCACTGTAACTTTAGGGAGATAAGACCCGATGCGATCTGCTCTCTG
130 TCGCTTACTTGAGTTTGCTCCACTGCAACTTCAGGGAGATAAGACCAGATGCGATATGCTCTCTG
*
17814047 CAACTTCAGAGAGATAAGATCTGT
195 CAACTTCAGAAAGATAAGATCTGT
*
17814071 GATTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGC
1 GATTTTAATCCACTCCACTACAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGC
*
17814136 AACTTCAGGGGGATAAGATTCGCCATCTTCAGTCTGC-CTCACTACAACTTCA-GGAGGATAAGG
66 AACTTCAGGGGGATAAGATTCGCCATCTTCAGTCTGCTC-CACTACAACTTCAGGGA-GATAAGA
* * * * *
17814199 CTTGCTTACTT-AGTTTGCTCCACTGCAACTTCAGGGAGATAAGACTATATGCGATATTCTTTCT
129 CTCGCTTACTTGAGTTTGCTCCACTGCAACTTCAGGGAGATAAGACCAGATGCGATATGCTCTCT
*
17814263 GTAACTTCAGAAAGATAAGATCTGT
194 GCAACTTCAGAAAGATAAGATCTGT
* * * * * *
17814288 GATTTTAATCCGCTCTACTGCGACTTCAGGGAGATAAGATTATTGGCTTTAATCTACTCCATTGC
1 GATTTTAATCCACTCCACTACAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGC
* *
17814353 AACTTCAGGGAGATAAGATTCACCATCTTCAGTCT
66 AACTTCAGGGGGATAAGATTCGCCATCTTCAGTCT
17814388 TTTAAATTGC
Statistics
Matches: 276, Mismatches: 38, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
217 164 0.59
218 112 0.41
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (218 bp):
GATTTTAATCCACTCCACTACAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGC
AACTTCAGGGGGATAAGATTCGCCATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACT
CGCTTACTTGAGTTTGCTCCACTGCAACTTCAGGGAGATAAGACCAGATGCGATATGCTCTCTGC
AACTTCAGAAAGATAAGATCTGT
Found at i:17814681 original size:50 final size:50
Alignment explanation
Indices: 17814573--17814682 Score: 123
Period size: 50 Copynumber: 2.2 Consensus size: 50
17814563 TTAACATCAG
** *
17814573 GGAGATAAGATTCACCGTTGTGGCTTCAATCTGCTCCGCTACAACGCCAG
1 GGAGATAAGATTCACCGTTGTGGCTTCAATCTGCTCCAATACAACGCCAA
* * ** *
17814623 GGAAATAAGATTCGCCGTTGTGGCTTCAATCTTTTCCAATGA-AACGTCAA
1 GGAGATAAGATTCACCGTTGTGGCTTCAATCTGCTCCAAT-ACAACGCCAA
*
17814673 GGTGATAAGA
1 GGAGATAAGA
17814683 CTGATGTCTT
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
50 48 0.98
51 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (50 bp):
GGAGATAAGATTCACCGTTGTGGCTTCAATCTGCTCCAATACAACGCCAA
Found at i:17814927 original size:43 final size:43
Alignment explanation
Indices: 17814874--17815015 Score: 113
Period size: 43 Copynumber: 3.3 Consensus size: 43
17814864 TATTTTTAAC
17814874 CTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGAT
1 CTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGAT
* **** ** * * * * ** *
17814917 CTGCTTCGCTGCCGGTGCAGAAAGGCAAGATCTGCTATTTTTAAC
1 CTGCTCCGCTG-CAACCCAGGGAGGCAAG-GCTGGTGTCTTCGAT
* *
17814962 CTGCTCCGCTACAACCCAGGGAGGCAAGGTTGGTGTCTTCGAT
1 CTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGAT
*
17815005 CTGCTTCGCTG
1 CTGCTCCGCTG
17815016 TCGGTGCAAG
Statistics
Matches: 65, Mismatches: 32, Indels: 4
0.64 0.32 0.04
Matches are distributed among these distances:
43 26 0.40
44 22 0.34
45 17 0.26
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (43 bp):
CTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGAT
Found at i:17814934 original size:88 final size:88
Alignment explanation
Indices: 17814825--17815391 Score: 864
Period size: 88 Copynumber: 6.4 Consensus size: 88
17814815 CTGGGGTCAA
* * *
17814825 CGATCTGCTTGGCTGTTGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACC
1 CGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACC
17814890 CAGGGAGGCAAGGCTGGTGTCTT
66 CAGGGAGGCAAGGCTGGTGTCTT
* *
17814913 CGATCTGCTTCGCTGCCGGTGCAGAAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACC
1 CGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACC
*
17814978 CAGGGAGGCAAGGTTGGTGTCTT
66 CAGGGAGGCAAGGCTGGTGTCTT
* *
17815001 CGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTAACCTGTTCCGCTACAACC
1 CGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACC
* *
17815066 CAGGGAGGTAAGACTGGTGTCTT
66 CAGGGAGGCAAGGCTGGTGTCTT
* * * * *
17815089 CGATATGCTTCACTGTCGGTGCGGGAAGGCAAGATCTGCAATTTTTAACCTGCTCCGCTATAACC
1 CGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACC
17815154 CAGGGAGGCAAGGCTGGTGTCTT
66 CAGGGAGGCAAGGCTGGTGTCTT
* * ** * * * *
17815177 CGATTTGCTTCGCTGTCAGTATAAGAAGGCAAGATCTGCTATTTTTAACTTACTCCGCTGCAACC
1 CGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACC
*
17815242 CAGGGAGGCAAGGCTAGTGTCTT
66 CAGGGAGGCAAGGCTGGTGTCTT
* *
17815265 CGATCTGCTTCGCTGTCGGTGCATGAAGGCAAGATCTGGTATTTTTTAACCTGCTCCGCTACAAC
1 CGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTA-TTTTTAACCTGCTCCGCTACAAC
* * *
17815330 CCAGGGAAGCAAGGTTGGTGTATT
65 CCAGGGAGGCAAGGCTGGTGTCTT
17815354 CGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTG
1 CGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTG
17815392 TTATCTCCAC
Statistics
Matches: 429, Mismatches: 49, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
88 352 0.82
89 77 0.18
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.28
Consensus pattern (88 bp):
CGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACC
CAGGGAGGCAAGGCTGGTGTCTT
Found at i:17816632 original size:19 final size:18
Alignment explanation
Indices: 17816608--17816646 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
17816598 TTCTTTATTC
17816608 TTTTCTCTCTCTTTTCTTT
1 TTTTCTCTCTCTTTT-TTT
* *
17816627 TTTTCTTTTTCTTTTTTT
1 TTTTCTCTCTCTTTTTTT
17816645 TT
1 TT
17816647 ATATTTTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTCTCTCTCTTTTTTT
Found at i:17816635 original size:13 final size:14
Alignment explanation
Indices: 17816596--17816644 Score: 62
Period size: 14 Copynumber: 3.3 Consensus size: 14
17816586 GGCCTCTCCA
17816596 TTTTCTTTATTCTTT
1 TTTTCTTT-TTCTTT
*
17816611 TCTCTCTCTTTTCTTT
1 T-TTTCT-TTTTCTTT
17816627 TTTTCTTTTTCTTT
1 TTTTCTTTTTCTTT
17816641 TTTT
1 TTTT
17816645 TTATATTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
14 12 0.40
15 5 0.17
16 11 0.37
17 2 0.07
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTCTTTTTCTTT
Found at i:17821933 original size:6 final size:6
Alignment explanation
Indices: 17821924--17821989 Score: 114
Period size: 6 Copynumber: 10.7 Consensus size: 6
17821914 GCGCATGAAT
17821924 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAATAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAA-AA
17821973 ATAAAA ATAATAA ATAA
1 ATAAAA ATAA-AA ATAA
17821990 TAATGATACA
Statistics
Matches: 58, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
6 46 0.79
7 12 0.21
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
ATAAAA
Found at i:17822472 original size:19 final size:19
Alignment explanation
Indices: 17822448--17822520 Score: 137
Period size: 19 Copynumber: 3.8 Consensus size: 19
17822438 AATCATATCT
17822448 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
17822467 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
17822486 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
17822505 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
17822521 CTTGAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 52 1.00
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:17822653 original size:19 final size:20
Alignment explanation
Indices: 17822613--17822653 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
17822603 AAATGATATA
*
17822613 ATTTTGGACTTTGTTTTATT
1 ATTTTGGACTTTATTTTATT
*
17822633 ATTTTGGA-TTTATTTTTTT
1 ATTTTGGACTTTATTTTATT
17822652 AT
1 AT
17822654 GAGCCCGGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.17, C:0.02, G:0.12, T:0.68
Consensus pattern (20 bp):
ATTTTGGACTTTATTTTATT
Found at i:17840139 original size:21 final size:21
Alignment explanation
Indices: 17840113--17840157 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
17840103 ATATTTGGTA
17840113 TGTAGGCAATGCTGTTCAATT
1 TGTAGGCAATGCTGTTCAATT
17840134 TGTAGGCAATGCTGTTCAATT
1 TGTAGGCAATGCTGTTCAATT
17840155 TGT
1 TGT
17840158 TGTCAGCTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.13, G:0.24, T:0.40
Consensus pattern (21 bp):
TGTAGGCAATGCTGTTCAATT
Found at i:17841335 original size:13 final size:13
Alignment explanation
Indices: 17841313--17841388 Score: 134
Period size: 13 Copynumber: 5.8 Consensus size: 13
17841303 CACTCAAATG
17841313 TCTCAAAAGCACT
1 TCTCAAAAGCACT
* *
17841326 TTTGAAAAGCACT
1 TCTCAAAAGCACT
17841339 TCTCAAAAGCACT
1 TCTCAAAAGCACT
17841352 TCTCAAAAGCACT
1 TCTCAAAAGCACT
17841365 TCTCAAAAGCACT
1 TCTCAAAAGCACT
17841378 TCTCAAAAGCA
1 TCTCAAAAGCA
17841389 ATGAAGAACT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 59 1.00
ACGTcount: A:0.39, C:0.28, G:0.09, T:0.24
Consensus pattern (13 bp):
TCTCAAAAGCACT
Found at i:17844681 original size:14 final size:13
Alignment explanation
Indices: 17844632--17844682 Score: 54
Period size: 12 Copynumber: 4.1 Consensus size: 13
17844622 AACTAGTCAT
17844632 GGAGAGA-ATTGA
1 GGAGAGATATTGA
* *
17844644 GGAGGGATATT-T
1 GGAGAGATATTGA
17844656 GGAGAGAT-TTGA
1 GGAGAGATATTGA
17844668 GGAGAGAATATTGA
1 GGAGAG-ATATTGA
17844682 G
1 G
17844683 ATTTGGGGAG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
11 2 0.06
12 19 0.61
13 5 0.16
14 5 0.16
ACGTcount: A:0.35, C:0.00, G:0.41, T:0.24
Consensus pattern (13 bp):
GGAGAGATATTGA
Found at i:17845807 original size:27 final size:27
Alignment explanation
Indices: 17845772--17845853 Score: 128
Period size: 27 Copynumber: 3.0 Consensus size: 27
17845762 ACCTCAAAAT
*
17845772 AGGTAAAATGACCAAAATACCCCTATA
1 AGGTAAAATGACCGAAATACCCCTATA
* *
17845799 GGGTAAAATAACCGAAATACCCCTATA
1 AGGTAAAATGACCGAAATACCCCTATA
*
17845826 AGGTAAAATGACCGAAATACCCCCATA
1 AGGTAAAATGACCGAAATACCCCTATA
17845853 A
1 A
17845854 TGACCGAAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.46, C:0.23, G:0.13, T:0.17
Consensus pattern (27 bp):
AGGTAAAATGACCGAAATACCCCTATA
Found at i:17845837 original size:54 final size:53
Alignment explanation
Indices: 17845773--17846379 Score: 529
Period size: 54 Copynumber: 11.8 Consensus size: 53
17845763 CCTCAAAATA
* * *
17845773 GGTAAAATGACCAAAATACCCCTATAGGGTAAAATAACCGAAATACCCCTATAA
1 GGTAAAATGACCGAAATACCCC-ATAGGGTAAAATGACCGAAATACCCCTATAG
* *
17845827 GGTAAAATGACCGAAATACCCC-CA---T--AATGACCGAAATA-CCCT-CA-
1 GGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAATACCCCTATAG
* *
17845871 --T---A-GACCAAAATACACCC--AGGATAAAATGACCGAAATA-CCCTCATAG
1 GGTAAAATGACCGAAATAC-CCCATAGGGTAAAATGACCGAAATACCCCT-ATAG
*
17845917 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCAAAATACACCC---AG
1 GGTAAAATGACCGAAATA-CCCCATAGGGTAAAATGACCGAAATAC-CCCTATAG
*
17845969 GGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCC-CATAGGGTAAAATGACCGAAATACCCCTATAG
* * * * *
17846023 GGTAAAATGACCAAAATACCTCATAGGGTAAAAAGACCAAAATACCCTTATAG
1 GGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAATACCCCTATAG
* * **
17846076 GGTAAAATTACCGAAATACCCCAATAGGGTAAAAGGACTAAAATA-CCCTCATAG
1 GGTAAAATGACCGAAATACCCC-ATAGGGTAAAATGACCGAAATACCCCT-ATAG
* ** *
17846130 GGTAAAATGACCGAAATATCCCCATAAGGTAAAATGATTGAAATA-CCCAATAG
1 GGTAAAATGACCGAAATA-CCCCATAGGGTAAAATGACCGAAATACCCCTATAG
* * ** *
17846183 GGTAAAATTACTGAAATACCCCATAGGAAAAAATGACCTAAATA--CCT-T--
1 GGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAATACCCCTATAG
* * * * * * *
17846231 --CACAGTGACCAAAATACCCCCATAAGGTAAAATGACCAAAATATCCCC-ATCG
1 GGTAAAATGACCGAAATA-CCCCATAGGGTAAAATGACCGAAATA-CCCCTATAG
* * *
17846283 GGTAGAATGACCAAAATACCCCATAGGGTAAAATGATCGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAATACCCCTATAG
* * *
17846336 GGTAGAATGATCGAAATACCCCCATAGGGTAAATTGACCGAAAT
1 GGTAAAATGACCGAAATA-CCCCATAGGGTAAAATGACCGAAAT
17846380 TATAACCCTA
Statistics
Matches: 457, Mismatches: 58, Indels: 76
0.77 0.10 0.13
Matches are distributed among these distances:
38 11 0.02
39 4 0.01
41 1 0.00
42 1 0.00
43 17 0.04
45 2 0.00
46 14 0.03
47 34 0.07
48 1 0.00
49 1 0.00
50 4 0.01
51 9 0.02
52 80 0.18
53 113 0.25
54 158 0.35
55 4 0.01
56 3 0.01
ACGTcount: A:0.44, C:0.23, G:0.16, T:0.18
Consensus pattern (53 bp):
GGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAATACCCCTATAG
Found at i:17845883 original size:18 final size:20
Alignment explanation
Indices: 17845832--17845872 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
17845822 TATAAGGTAA
17845832 AATGACCGAAATACCCCCAT
1 AATGACCGAAATACCCCCAT
*
17845852 AATGACCGAAATACCCTCAT
1 AATGACCGAAATACCCCCAT
17845872 A
1 A
17845873 GACCAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.32, G:0.10, T:0.17
Consensus pattern (20 bp):
AATGACCGAAATACCCCCAT
Found at i:17845926 original size:27 final size:26
Alignment explanation
Indices: 17845892--17846379 Score: 508
Period size: 27 Copynumber: 18.6 Consensus size: 26
17845882 ACACCCAGGA
17845892 TAAAATGACCGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCC-CATAGGG
17845919 TAAAATGACCGAAATACCCCCATAGGG
1 TAAAATGACCGAAATA-CCCCATAGGG
*
17845946 TAAAATGACCAAAATACACCC--AGGG
1 TAAAATGACCGAAATAC-CCCATAGGG
17845971 TAAAATGACCGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCC-CATAGGG
17845998 TAAAATGACCGAAATACCCCCATAGGG
1 TAAAATGACCGAAATA-CCCCATAGGG
* *
17846025 TAAAATGACCAAAATACCTCATAGGG
1 TAAAATGACCGAAATACCCCATAGGG
* * *
17846051 TAAAAAGACCAAAATACCCTTATAGGG
1 TAAAATGACCGAAATACCC-CATAGGG
*
17846078 TAAAATTACCGAAATACCCCAATAGGG
1 TAAAATGACCGAAATACCCC-ATAGGG
* **
17846105 TAAAAGGACTAAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCC-CATAGGG
*
17846132 TAAAATGACCGAAATATCCCCATAAGG
1 TAAAATGACCGAAATA-CCCCATAGGG
** *
17846159 TAAAATGATTGAAATACCCAATAGGG
1 TAAAATGACCGAAATACCCCATAGGG
* * *
17846185 TAAAATTACTGAAATACCCCATAGGA
1 TAAAATGACCGAAATACCCCATAGGG
* *
17846211 AAAAATGACCTAAATA--CC-T----
1 TAAAATGACCGAAATACCCCATAGGG
* * * *
17846230 TCACAGTGACCAAAATACCCCCATAAGG
1 T-AAAATGACCGAAATA-CCCCATAGGG
* *
17846258 TAAAATGACCAAAATATCCCCATCGGG
1 TAAAATGACCGAAATA-CCCCATAGGG
* *
17846285 TAGAATGACCAAAATACCCCATAGGG
1 TAAAATGACCGAAATACCCCATAGGG
*
17846311 TAAAATGATCGAAATACCCCTATAGGG
1 TAAAATGACCGAAATACCCC-ATAGGG
* *
17846338 TAGAATGATCGAAATACCCCCATAGGG
1 TAAAATGACCGAAATA-CCCCATAGGG
*
17846365 TAAATTGACCGAAAT
1 TAAAATGACCGAAAT
17846380 TATAACCCTA
Statistics
Matches: 391, Mismatches: 49, Indels: 42
0.81 0.10 0.09
Matches are distributed among these distances:
20 12 0.03
23 3 0.01
24 5 0.01
25 21 0.05
26 95 0.24
27 240 0.61
28 15 0.04
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.18
Consensus pattern (26 bp):
TAAAATGACCGAAATACCCCATAGGG
Found at i:17846103 original size:80 final size:81
Alignment explanation
Indices: 17845873--17846379 Score: 569
Period size: 80 Copynumber: 6.4 Consensus size: 81
17845863 TACCCTCATA
* *
17845873 GACCAAAATACACCC--AGGATAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATAC
1 GACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATAC
17845936 CCCCATAGGGTAAAAT
66 CCCCATAGGGTAAAAT
*
17845952 GACCAAAATACACCC--AGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATAC
1 GACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATAC
17846015 CCCCATAGGGTAAAAT
66 CCCCATAGGGTAAAAT
* * * * *
17846031 GACCAAAATA-CCTCATAGGGTAAAAAGACCAAAATACCCTTATAGGGTAAAATTACCGAAATAC
1 GACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATAC
* *
17846095 CCCAATAGGGTAAAAG
66 CCCCATAGGGTAAAAT
* * * **
17846111 GACTAAAATACCCTCATAGGGTAAAATGACCGAAATATCCC-CATAAGGTAAAATGATTGAAATA
1 GACCAAAATACCCCCATAGGGTAAAATGACCGAAATA-CCCTCATAGGGTAAAATGACCGAAATA
*
17846175 -CCCAATAGGGTAAAAT
65 CCCCCATAGGGTAAAAT
* ** ** * * * *
17846191 TACTGAAATA-CCCCATAGGAAAAAATGACCTAAATACCTTCACA--G-----TGACCAAAATAC
1 GACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATAC
*
17846248 CCCCATAAGGTAAAAT
66 CCCCATAGGGTAAAAT
* * * * *
17846264 GACCAAAATATCCCCATCGGGTAGAATGACCAAAATACCC-CATAGGGTAAAATGATCGAAATAC
1 GACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATAC
* *
17846328 CCCTATAGGGTAGAAT
66 CCCCATAGGGTAAAAT
* * *
17846344 GATCGAAATACCCCCATAGGGTAAATTGACCGAAAT
1 GACCAAAATACCCCCATAGGGTAAAATGACCGAAAT
17846380 TATAACCCTA
Statistics
Matches: 361, Mismatches: 53, Indels: 27
0.82 0.12 0.06
Matches are distributed among these distances:
72 8 0.02
73 24 0.07
74 23 0.06
75 1 0.00
77 1 0.00
78 4 0.01
79 113 0.31
80 142 0.39
81 42 0.12
82 3 0.01
ACGTcount: A:0.44, C:0.22, G:0.16, T:0.18
Consensus pattern (81 bp):
GACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATAC
CCCCATAGGGTAAAAT
Found at i:17847897 original size:20 final size:20
Alignment explanation
Indices: 17847872--17847911 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
17847862 ACAATTCCAA
17847872 ACACTCACCTATTACACTTT
1 ACACTCACCTATTACACTTT
*
17847892 ACACTCACCTATTACGCTTT
1 ACACTCACCTATTACACTTT
17847912 CACCGAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.35, G:0.03, T:0.35
Consensus pattern (20 bp):
ACACTCACCTATTACACTTT
Found at i:17852003 original size:18 final size:17
Alignment explanation
Indices: 17851980--17852014 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
17851970 GTTGGGCCAA
17851980 AATGGGCCGTGTGGGCTC
1 AATGGG-CGTGTGGGCTC
*
17851998 AATGGGCTTGTGGGCTC
1 AATGGGCGTGTGGGCTC
17852015 CACATAGATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.11, C:0.20, G:0.43, T:0.26
Consensus pattern (17 bp):
AATGGGCGTGTGGGCTC
Found at i:17852273 original size:27 final size:26
Alignment explanation
Indices: 17852241--17852316 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 26
17852231 AGACCCTAAA
* *
17852241 ATAGGGTAGAATGACCAAAATACCCC
1 ATAGGGTAAAATGACCGAAATACCCC
*
17852267 AATAGGGTAAAATAACCGAAATACCACC
1 -ATAGGGTAAAATGACCGAAATACC-CC
* *
17852295 ATAGGGTAAAACGATCGAAATA
1 ATAGGGTAAAATGACCGAAATA
17852317 ATCGAAATAC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
27 40 0.95
28 2 0.05
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.16
Consensus pattern (26 bp):
ATAGGGTAAAATGACCGAAATACCCC
Found at i:17852379 original size:63 final size:63
Alignment explanation
Indices: 17852258--17852379 Score: 154
Period size: 63 Copynumber: 1.9 Consensus size: 63
17852248 AGAATGACCA
* * * *
17852258 AAATACCCCAATAGGGTAAAATAACCGAAATACCACCATAGGGTAAAACGATCGAAATAATCG
1 AAATACCCCAATAAGGTAAAATAACCGAAATACCACCATAGGGTAAAAAGACCAAAATAATCG
* ** * * *
17852321 AAATACCCCTATAAGGTAAAATGGCCGCAATACCCCCGTAGGGTAAAAAGACCAAAATA
1 AAATACCCCAATAAGGTAAAATAACCGAAATACCACCATAGGGTAAAAAGACCAAAATA
17852380 CTCCCGTAGG
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
63 49 1.00
ACGTcount: A:0.46, C:0.22, G:0.16, T:0.16
Consensus pattern (63 bp):
AAATACCCCAATAAGGTAAAATAACCGAAATACCACCATAGGGTAAAAAGACCAAAATAATCG
Found at i:17852650 original size:27 final size:26
Alignment explanation
Indices: 17852320--17852653 Score: 339
Period size: 27 Copynumber: 12.4 Consensus size: 26
17852310 CGAAATAATC
* * *
17852320 GAAATACCCCTATAAGGTAAAATGGCC
1 GAAATACCCC-ATAGGGTAAAATGACT
* * * *
17852347 GCAATACCCCCGTAGGGTAAAAAGACC
1 GAAATA-CCCCATAGGGTAAAATGACT
* *
17852374 AAAATACTCCCGTAGGGTAAAATGACT
1 GAAATAC-CCCATAGGGTAAAATGACT
* *
17852401 GAAATACGCCCATAGGATAAAAGGACT
1 GAAATAC-CCCATAGGGTAAAATGACT
* *
17852428 AAAATACTCCCATAGGGTAAAATGATT
1 GAAATAC-CCCATAGGGTAAAATGACT
17852455 GAAATACGCCCATAGGGTAAAATGA-T
1 GAAATAC-CCCATAGGGTAAAATGACT
*
17852481 CGAAATACCCCTATAGGGTAAAATGACC
1 -GAAATACCCC-ATAGGGTAAAATGACT
* *
17852509 GAAATACCCCCATAGTGTTAAATGACT
1 GAAATA-CCCCATAGGGTAAAATGACT
17852536 GAAATACCCCCATAGGGTAAAATGACT
1 GAAATA-CCCCATAGGGTAAAATGACT
17852563 GAAATACCCCTATAGGGTAAAATGAAC-
1 GAAATACCCC-ATAGGGTAAAATG-ACT
* *
17852590 GAAATACCTCTATAGGGTAAAATGACC
1 GAAATACC-CCATAGGGTAAAATGACT
*
17852617 GAAATACGCTCATAGGGTAAAATGACT
1 GAAATAC-CCCATAGGGTAAAATGACT
**
17852644 GTTATACCCC
1 GAAATACCCC
17852654 TTGGAGATGA
Statistics
Matches: 262, Mismatches: 34, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
26 13 0.05
27 237 0.90
28 12 0.05
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.20
Consensus pattern (26 bp):
GAAATACCCCATAGGGTAAAATGACT
Found at i:17852668 original size:81 final size:81
Alignment explanation
Indices: 17852320--17852654 Score: 397
Period size: 81 Copynumber: 4.1 Consensus size: 81
17852310 CGAAATAATC
* ** * * * ** *
17852320 GAAATACCCCTATAAGGTAAAATGGCCGCAATACCCCCGTAGGGTAAAAAGACCAAAATACTCCC
1 GAAATACCCCTATAGGGTAAAATGAACGAAATACCCCCATAGGGTAAAATGACTGAAATACGCCC
*
17852385 GTAGGGTAAAATGACT
66 ATAGGGTAAAATGACT
* * * * *
17852401 GAAATACGCCC-ATAGGATAAAA-GGACTAAAATACTCCCATAGGGTAAAATGATTGAAATACGC
1 GAAATAC-CCCTATAGGGTAAAATGAAC-GAAATACCCCCATAGGGTAAAATGACTGAAATACGC
17852464 CCATAGGGTAAAATGA-T
64 CCATAGGGTAAAATGACT
* * * *
17852481 CGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAGTGTTAAATGACTGAAATACCCC
1 -GAAATACCCCTATAGGGTAAAATGAACGAAATACCCCCATAGGGTAAAATGACTGAAATACGCC
17852546 CATAGGGTAAAATGACT
65 CATAGGGTAAAATGACT
* * * *
17852563 GAAATACCCCTATAGGGTAAAATGAACGAAATACCTCTATAGGGTAAAATGACCGAAATACGCTC
1 GAAATACCCCTATAGGGTAAAATGAACGAAATACCCCCATAGGGTAAAATGACTGAAATACGCCC
17852628 ATAGGGTAAAATGACT
66 ATAGGGTAAAATGACT
**
17852644 GTTATACCCCT
1 GAAATACCCCT
17852655 TGGAGATGAA
Statistics
Matches: 216, Mismatches: 32, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
80 7 0.03
81 203 0.94
82 6 0.03
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.20
Consensus pattern (81 bp):
GAAATACCCCTATAGGGTAAAATGAACGAAATACCCCCATAGGGTAAAATGACTGAAATACGCCC
ATAGGGTAAAATGACT
Found at i:17852669 original size:54 final size:54
Alignment explanation
Indices: 17852320--17852654 Score: 374
Period size: 54 Copynumber: 6.2 Consensus size: 54
17852310 CGAAATAATC
* * * * * * *
17852320 GAAATACCCCTATAAGGTAAAATGGCCGCAATACCCCCGTAGGGTAAAAAGACC
1 GAAATACCCCTATAGGGTAAAATGACCGAAATACGCCCATAGGGTAAAATGACT
* * * * *
17852374 AAAATACTCCC-GTAGGGTAAAATGACTGAAATACGCCCATAGGATAAAAGGACT
1 GAAATAC-CCCTATAGGGTAAAATGACCGAAATACGCCCATAGGGTAAAATGACT
* **
17852428 AAAATACTCCC-ATAGGGTAAAATGATTGAAATACGCCCATAGGGTAAAATGA-T
1 GAAATAC-CCCTATAGGGTAAAATGACCGAAATACGCCCATAGGGTAAAATGACT
* * *
17852481 CGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAGTGTTAAATGACT
1 -GAAATACCCCTATAGGGTAAAATGACCGAAATACGCCCATAGGGTAAAATGACT
* *
17852536 GAAATACCCCCATAGGGTAAAATGACTGAAATAC-CCCTATAGGGTAAAATGAAC-
1 GAAATACCCCTATAGGGTAAAATGACCGAAATACGCCC-ATAGGGTAAAATG-ACT
* *
17852590 GAAATACCTCTATAGGGTAAAATGACCGAAATACGCTCATAGGGTAAAATGACT
1 GAAATACCCCTATAGGGTAAAATGACCGAAATACGCCCATAGGGTAAAATGACT
**
17852644 GTTATACCCCT
1 GAAATACCCCT
17852655 TGGAGATGAA
Statistics
Matches: 241, Mismatches: 32, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
53 9 0.04
54 224 0.93
55 8 0.03
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.20
Consensus pattern (54 bp):
GAAATACCCCTATAGGGTAAAATGACCGAAATACGCCCATAGGGTAAAATGACT
Found at i:17852956 original size:26 final size:26
Alignment explanation
Indices: 17852876--17852956 Score: 126
Period size: 26 Copynumber: 3.1 Consensus size: 26
17852866 TTTGCGACAT
* *
17852876 ATACTGTTACTGGCAGTTTTGCTGCA
1 ATACTATTACTGGCAGTTTTGCTGCG
*
17852902 ATACTATTACTGGCAGTTTTGCTGTG
1 ATACTATTACTGGCAGTTTTGCTGCG
*
17852928 ATACTATTACTGGTAGTTTTGCTGCG
1 ATACTATTACTGGCAGTTTTGCTGCG
17852954 ATA
1 ATA
17852957 TTAGTGTGTT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.21, C:0.16, G:0.22, T:0.41
Consensus pattern (26 bp):
ATACTATTACTGGCAGTTTTGCTGCG
Found at i:17853157 original size:28 final size:28
Alignment explanation
Indices: 17853064--17853145 Score: 146
Period size: 28 Copynumber: 2.9 Consensus size: 28
17853054 ACTGCATTGT
17853064 TACTGTATTGGGCTAAGGCCCACACTAA
1 TACTGTATTGGGCTAAGGCCCACACTAA
*
17853092 TTCTGTATTGGGCTAAGGCCCACACTAA
1 TACTGTATTGGGCTAAGGCCCACACTAA
*
17853120 TACTGTATTGGGCTAAGACCCACACT
1 TACTGTATTGGGCTAAGGCCCACACT
17853146 GTACTGTCAT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (28 bp):
TACTGTATTGGGCTAAGGCCCACACTAA
Found at i:17853625 original size:22 final size:21
Alignment explanation
Indices: 17853594--17853642 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
17853584 GATTGGGTGT
*
17853594 TTTTTTAAACATTA-AAAAGAGG
1 TTTTTAAAAC-TTAGAAAAGA-G
*
17853616 TTTTTAAAACTTAGAAACGAG
1 TTTTTAAAACTTAGAAAAGAG
17853637 TTTTTA
1 TTTTTA
17853643 CCAACAACTC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (21 bp):
TTTTTAAAACTTAGAAAAGAG
Found at i:17859803 original size:165 final size:166
Alignment explanation
Indices: 17859627--17859926 Score: 408
Period size: 165 Copynumber: 1.8 Consensus size: 166
17859617 AAGAACAAAA
* *
17859627 AAAGATAAAAATATCATCAAAATAGTAAAACTTATTTTAAATAAGAAAG-AGTGAA-TTAGTCAT
1 AAAGATAAAAATATCATCAAAATAATAAAACTTATTTTAAATAAG-AAGTAGTGAACTT-GTAAT
* * *
17859690 TTAACCAACTGAATTGGTATCACTTAACTTGTGTCACAAAAC-TAGTAAACGACTTAATATGAGT
64 TTAACCAACTGAATTGGTATCACTTAACTCGTGACACAAAACTTAGTAAACGACTTAATATGAGA
17859754 AGAGATATAATTTTTTTTGGTTTTCTTAAAAAATATGC
129 AGAGATATAATTTTTTTTGGTTTTCTTAAAAAATATGC
* * * * * * *
17859792 AAAGATAAAAATTTCATCATACTAATATAACTTATTTTAAATAAGAAGTGGTTAACTTTTAATTT
1 AAAGATAAAAATATCATCAAAATAATAAAACTTATTTTAAATAAGAAGTAGTGAACTTGTAATTT
* * * * *
17859857 AACCAACTGAGTTGGTGTCACTTAACTCGTGACACCAAACTTAGTAAGCGACTTAATATTAGAAG
66 AACCAACTGAATTGGTATCACTTAACTCGTGACACAAAACTTAGTAAACGACTTAATATGAGAAG
17859922 AGATA
131 AGATA
17859927 AAAAGATAAA
Statistics
Matches: 115, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
164 3 0.03
165 84 0.73
166 28 0.24
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (166 bp):
AAAGATAAAAATATCATCAAAATAATAAAACTTATTTTAAATAAGAAGTAGTGAACTTGTAATTT
AACCAACTGAATTGGTATCACTTAACTCGTGACACAAAACTTAGTAAACGACTTAATATGAGAAG
AGATATAATTTTTTTTGGTTTTCTTAAAAAATATGC
Found at i:17874058 original size:20 final size:20
Alignment explanation
Indices: 17874033--17874071 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
17874023 TCAAATTATC
17874033 TTATTTTCAT-TTGCATTTAA
1 TTATTTTC-TGTTGCATTTAA
17874053 TTATTTTCTGTTGCATTTA
1 TTATTTTCTGTTGCATTTA
17874072 CTTTCTGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.21, C:0.10, G:0.08, T:0.62
Consensus pattern (20 bp):
TTATTTTCTGTTGCATTTAA
Found at i:17884480 original size:27 final size:27
Alignment explanation
Indices: 17884449--17884566 Score: 150
Period size: 27 Copynumber: 4.4 Consensus size: 27
17884439 TTAACTATAT
*
17884449 CGAAATACCCTCGATGGGTAAACTTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
*
17884476 CGAAATACCCTCGATGGGTAAAATTAT
1 CGAAATACCCTCGATGGGTAAAATTAC
* *
17884503 CGAAATTCCCTCGATGGGTAAAATTAT
1 CGAAATACCCTCGATGGGTAAAATTAC
* *
17884530 CGAAATACTCC-CGATGAGTTAAATTAC
1 CGAAATAC-CCTCGATGGGTAAAATTAC
17884557 C-ATAATACCC
1 CGA-AATACCC
17884567 CCATTAGGGT
Statistics
Matches: 82, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
26 3 0.04
27 77 0.94
28 2 0.02
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (27 bp):
CGAAATACCCTCGATGGGTAAAATTAC
Found at i:17890764 original size:28 final size:27
Alignment explanation
Indices: 17890687--17890768 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
17890677 TTGTTAACTG
* *
17890687 TATCAAAATACCCTCGATGGGTAAAAT
1 TATCCAAATACCCCCGATGGGTAAAAT
* *
17890714 TATCGAAATACCCCTGATGGGTAAAAT
1 TATCCAAATACCCCCGATGGGTAAAAT
*
17890741 TA-CCATAATACCCCCGTTAGGGTAAAAT
1 TATCCA-AATACCCCCGAT-GGGTAAAAT
17890769 GATATATATA
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.04
27 36 0.77
28 9 0.19
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.26
Consensus pattern (27 bp):
TATCCAAATACCCCCGATGGGTAAAAT
Found at i:17890906 original size:27 final size:27
Alignment explanation
Indices: 17890867--17890939 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
17890857 ATGGAGGAAG
17890867 TACTGTT-TCTGGTGGCTCTGCCACA-A
1 TACTGTTAT-TGGTGGCTCTGCCACATA
*
17890893 TTACTGTTATTGGTGGCTTTGCCACATA
1 -TACTGTTATTGGTGGCTCTGCCACATA
*
17890921 TACTG-TATTGG-AGCTCTGC
1 TACTGTTATTGGTGGCTCTGC
17890940 TGCGTTATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
25 6 0.15
26 6 0.15
27 27 0.66
28 2 0.05
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.38
Consensus pattern (27 bp):
TACTGTTATTGGTGGCTCTGCCACATA
Found at i:17917061 original size:40 final size:40
Alignment explanation
Indices: 17917006--17917084 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
17916996 AGAATCCTGA
*
17917006 CTAATAATTTTATATCTTCATTTAAGTCATCTTCAAACCG
1 CTAATAATTTTATATCTTCATTTAAGCCATCTTCAAACCG
*
17917046 CTAATAATTTTATATCTTTATTTAAGCCATCTTCAAACC
1 CTAATAATTTTATATCTTCATTTAAGCCATCTTCAAACC
17917085 ACTTACACAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (40 bp):
CTAATAATTTTATATCTTCATTTAAGCCATCTTCAAACCG
Found at i:17920554 original size:14 final size:15
Alignment explanation
Indices: 17920517--17920554 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
17920507 TACCCAAACA
* *
17920517 CTAAACCCAATTAGC
1 CTAAGCCCAATTACC
17920532 CTAAGCCCAATTACC
1 CTAAGCCCAATTACC
17920547 CT-AGCCCA
1 CTAAGCCCA
17920555 GCCTCAATGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 6 0.29
15 15 0.71
ACGTcount: A:0.34, C:0.39, G:0.08, T:0.18
Consensus pattern (15 bp):
CTAAGCCCAATTACC
Found at i:17926035 original size:19 final size:18
Alignment explanation
Indices: 17925984--17926042 Score: 68
Period size: 19 Copynumber: 3.3 Consensus size: 18
17925974 ATATCCTTTC
*
17925984 AAAAAAAA-CAAAAACAA
1 AAAAAAAATCAAAATCAA
17926001 AAAAAAAACTCAAAATCAA
1 AAAAAAAA-TCAAAATCAA
*
17926020 AATCAAAAATCAAAAT-AA
1 AA-AAAAAATCAAAATCAA
17926038 AAAAA
1 AAAAA
17926043 TGAGAGAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
17 10 0.28
18 4 0.11
19 17 0.47
20 5 0.14
ACGTcount: A:0.80, C:0.12, G:0.00, T:0.08
Consensus pattern (18 bp):
AAAAAAAATCAAAATCAA
Found at i:17926081 original size:8 final size:7
Alignment explanation
Indices: 17926049--17926082 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
17926039 AAAATGAGAG
17926049 AAAAAGA
1 AAAAAGA
*
17926056 AAGAAGA
1 AAAAAGA
17926063 AAAGAAGA
1 AAA-AAGA
17926071 AAAAAGA
1 AAAAAGA
17926078 AAAAA
1 AAAAA
17926083 TCTAGAGGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:17926095 original size:18 final size:18
Alignment explanation
Indices: 17926074--17926135 Score: 72
Period size: 18 Copynumber: 3.4 Consensus size: 18
17926064 AAGAAGAAAA
*
17926074 AAGAAAAAATCTAGAGGG
1 AAGAAAAAATCTAGATGG
* *
17926092 AAG-AAAATTCCATGAATGG
1 AAGAAAAAATCTA-G-ATGG
17926111 AAGAAAAAATCTAGATGG
1 AAGAAAAAATCTAGATGG
17926129 AAGAAAA
1 AAGAAAA
17926136 TTCCATGAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
17 7 0.19
18 15 0.42
19 7 0.19
20 7 0.19
ACGTcount: A:0.56, C:0.06, G:0.23, T:0.15
Consensus pattern (18 bp):
AAGAAAAAATCTAGATGG
Found at i:17926114 original size:19 final size:19
Alignment explanation
Indices: 17926090--17926146 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
17926080 AAATCTAGAG
17926090 GGAAGAAAATTCCATGAAT
1 GGAAGAAAATTCCATGAAT
* *
17926109 GGAAGAAAAAATCTA-G-AT
1 GGAAG-AAAATTCCATGAAT
17926127 GGAAGAAAATTCCATGAAT
1 GGAAGAAAATTCCATGAAT
17926146 G
1 G
17926147 AAAATTTCAG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
17 7 0.23
18 8 0.26
19 9 0.29
20 7 0.23
ACGTcount: A:0.49, C:0.09, G:0.23, T:0.19
Consensus pattern (19 bp):
GGAAGAAAATTCCATGAAT
Found at i:17926123 original size:37 final size:37
Alignment explanation
Indices: 17926074--17926146 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
17926064 AAGAAGAAAA
17926074 AAGAAAAAATCTAGAGGGAAGAAAATTCCATGAATGG
1 AAGAAAAAATCTAGAGGGAAGAAAATTCCATGAATGG
*
17926111 AAGAAAAAATCTAGATGGAAGAAAATTCCATGAATG
1 AAGAAAAAATCTAGAGGGAAGAAAATTCCATGAATG
17926147 AAAATTTCAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.52, C:0.08, G:0.22, T:0.18
Consensus pattern (37 bp):
AAGAAAAAATCTAGAGGGAAGAAAATTCCATGAATGG
Found at i:17926978 original size:15 final size:16
Alignment explanation
Indices: 17926954--17926994 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
17926944 TCATATATAC
17926954 ATTCTTTAATAT-TTT
1 ATTCTTTAATATGTTT
*
17926969 ATTCTATAATATGTTT
1 ATTCTTTAATATGTTT
*
17926985 TTTCTTTAAT
1 ATTCTTTAAT
17926995 TTCACTCATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.63
Consensus pattern (16 bp):
ATTCTTTAATATGTTT
Found at i:17929786 original size:54 final size:54
Alignment explanation
Indices: 17929699--17930042 Score: 469
Period size: 54 Copynumber: 6.4 Consensus size: 54
17929689 TGACCAAAAG
*
17929699 ACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGT-AAATGGATTGAAAT
1 ACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAAT-GACTGAAAT
** * *
17929753 ACCTTCATAGGGTAAAATGATCGAAATACCCCCATAGGATAAAATGACTAAAAT
1 ACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGACTGAAAT
* * *
17929807 ACCCCCATAGGGTAAAATGATCAAAATATCCCCATAGGGTAAAATTA-TCGAAAT
1 ACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGACT-GAAAT
* *
17929861 ACCCTCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGACTAAAAT
1 ACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGACTGAAAT
* *
17929915 ACCCCCATAGGGTAAAATGA-CTGAAATACCTCCATAAGGTAAAATGACTGAAAT
1 ACCCCCATAGGGTAAAATGATC-GAAATACCCCCATAGGGTAAAATGACTGAAAT
* * * *
17929969 ACCCCTATAGGGTAAAATGACCGAAATACCCCTATAAGGTAAAATGACTGAAAT
1 ACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGACTGAAAT
** *
17930023 ACCATCATAGGATAAAATGA
1 ACCCCCATAGGGTAAAATGA
17930043 CTATTATACC
Statistics
Matches: 257, Mismatches: 28, Indels: 10
0.87 0.09 0.03
Matches are distributed among these distances:
53 2 0.01
54 249 0.97
55 6 0.02
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.21
Consensus pattern (54 bp):
ACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGACTGAAAT
Found at i:17930043 original size:27 final size:27
Alignment explanation
Indices: 17929699--17930044 Score: 425
Period size: 27 Copynumber: 12.8 Consensus size: 27
17929689 TGACCAAAAG
17929699 ACCCCCATAGGGTAAAATGA-TCGAAAT
1 ACCCCCATAGGGTAAAATGACT-GAAAT
*
17929726 ACCCCCATAGGGT-AAATGGATTGAAAT
1 ACCCCCATAGGGTAAAAT-GACTGAAAT
**
17929753 ACCTTCATAGGGTAAAATGA-TCGAAAT
1 ACCCCCATAGGGTAAAATGACT-GAAAT
* *
17929780 ACCCCCATAGGATAAAATGACTAAAAT
1 ACCCCCATAGGGTAAAATGACTGAAAT
*
17929807 ACCCCCATAGGGTAAAATGA-TCAAAAT
1 ACCCCCATAGGGTAAAATGACT-GAAAT
* *
17929834 ATCCCCATAGGGTAAAATTA-TCGAAAT
1 ACCCCCATAGGGTAAAATGACT-GAAAT
*
17929861 ACCCTCATAGGGTAAAATGA-TCGAAAT
1 ACCCCCATAGGGTAAAATGACT-GAAAT
*
17929888 ACCCCCATAGGGTAAAATGACTAAAAT
1 ACCCCCATAGGGTAAAATGACTGAAAT
17929915 ACCCCCATAGGGTAAAATGACTGAAAT
1 ACCCCCATAGGGTAAAATGACTGAAAT
* *
17929942 ACCTCCATAAGGTAAAATGACTGAAAT
1 ACCCCCATAGGGTAAAATGACTGAAAT
* *
17929969 ACCCCTATAGGGTAAAATGACCGAAAT
1 ACCCCCATAGGGTAAAATGACTGAAAT
* *
17929996 ACCCCTATAAGGTAAAATGACTGAAAT
1 ACCCCCATAGGGTAAAATGACTGAAAT
** *
17930023 ACCATCATAGGATAAAATGACT
1 ACCCCCATAGGGTAAAATGACT
17930045 ATTATACCCC
Statistics
Matches: 283, Mismatches: 29, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
26 6 0.02
27 270 0.95
28 7 0.02
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.21
Consensus pattern (27 bp):
ACCCCCATAGGGTAAAATGACTGAAAT
Found at i:17931794 original size:24 final size:25
Alignment explanation
Indices: 17931767--17931837 Score: 83
Period size: 24 Copynumber: 2.9 Consensus size: 25
17931757 TGCTAAAGAG
*
17931767 CCCACTCAAGCTACTACTGAAG-CA
1 CCCACTCAAACTACTACTGAAGACA
* * *
17931791 CCCACTCAACCTGCTACCG-AGACA
1 CCCACTCAAACTACTACTGAAGACA
*
17931815 CCTACTCAAACTACTACTGAAGA
1 CCCACTCAAACTACTACTGAAGA
17931838 GCCCAAAAAC
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
23 2 0.05
24 33 0.87
25 3 0.08
ACGTcount: A:0.34, C:0.38, G:0.11, T:0.17
Consensus pattern (25 bp):
CCCACTCAAACTACTACTGAAGACA
Found at i:17934460 original size:28 final size:29
Alignment explanation
Indices: 17934376--17934466 Score: 96
Period size: 28 Copynumber: 3.1 Consensus size: 29
17934366 GTATCAGTAG
* * *
17934376 AGTGTGGGCCTTAGCCCATTACAATAA-C
1 AGTGGGGGCCTTAGCCCAATACAGTAATC
*
17934404 AGTGTGTGGGCCTTAGCCCAATACCGTAAT-
1 AGTG-G-GGGCCTTAGCCCAATACAGTAATC
* *
17934434 AGTGGGGGCCTTAGTCCAATATAGTAATC
1 AGTGGGGGCCTTAGCCCAATACAGTAATC
17934463 AGTG
1 AGTG
17934467 CAATGCAGTA
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
28 24 0.46
29 5 0.10
30 23 0.44
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (29 bp):
AGTGGGGGCCTTAGCCCAATACAGTAATC
Found at i:17934621 original size:26 final size:26
Alignment explanation
Indices: 17934592--17934649 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
17934582 TGCCAATAAT
* *
17934592 AGTA-ATGCAGTAAAGCTACCAGTAAC
1 AGTATATGCAGCAAAGCCACCAGT-AC
**
17934618 AGTATATGTGGCAAAGCCACCAGTAC
1 AGTATATGCAGCAAAGCCACCAGTAC
17934644 AGTATA
1 AGTATA
17934650 CTTCCCCTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 12 0.44
27 15 0.56
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.21
Consensus pattern (26 bp):
AGTATATGCAGCAAAGCCACCAGTAC
Found at i:17934809 original size:27 final size:26
Alignment explanation
Indices: 17934764--17934878 Score: 113
Period size: 27 Copynumber: 4.3 Consensus size: 26
17934754 GGGTATAACA
* *
17934764 GTCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTA-CCTTTAAGGGTATTTCG
*
17934791 GTCATTTTACCTTTAAGGGCATTTCG
1 GTCATTTTACCTTTAAGGGTATTTCG
* * ** *
17934817 ATCATATTACCCTTTGGGGGGGATTTCG
1 GTCATTTTA-CCTTT-AAGGGTATTTCG
*
17934845 GTCATTTTACCTTTCAAGTGTATTTCG
1 GTCATTTTACCTTT-AAGGGTATTTCG
17934872 GTCATTT
1 GTCATTT
17934879 GCCCATGAAT
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
26 21 0.30
27 34 0.48
28 16 0.23
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (26 bp):
GTCATTTTACCTTTAAGGGTATTTCG
Found at i:17935574 original size:5 final size:5
Alignment explanation
Indices: 17935564--17935602 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
17935554 GAGGAGGAGA
* * *
17935564 AGAAG AGAAG AGATG AGTAG AGAAG AGAAG AGAAA AGAA
1 AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG AGAA
17935603 AAAGGGAGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.59, C:0.00, G:0.36, T:0.05
Consensus pattern (5 bp):
AGAAG
Found at i:17937585 original size:136 final size:136
Alignment explanation
Indices: 17937341--17937590 Score: 369
Period size: 136 Copynumber: 1.8 Consensus size: 136
17937331 ACACATGACA
* * * * *
17937341 TTTATCTCTACTAATATTAAGTTGTTTACTGATTTCAGTGTCATGAGTTAAGTGACAGCAACTAA
1 TTTATCTCTACTAATATTAAGTCGTTTACTAATTTCAGTGACACGAGTTAAGTGACACCAACTAA
*
17937406 GTTGGTTAAATTACCAATTAAACCTTTCATATTTAAAATAAGTTATATTATTACGATGCTATTTT
66 GTTGGTTAAATTACCAATTAAACCTTTCATATTAAAAATAAGTTATATTATTACGATGCTATTTT
17937471 TATCTC
131 TATCTC
**
17937477 TTTATCTCTACTAATATTAAGTCGTTTACTAATTTTGGTGACACGAGTTAAGTGACACCAACTCA
1 TTTATCTCTACTAATATTAAGTCGTTTACTAATTTCAGTGACACGAGTTAAGTGACACCAACT-A
* * *
17937542 A-TTGGTTAAATTACTAATT-AGCCTCTTCTTATTAAAAATAAGTTATATT
65 AGTTGGTTAAATTACCAATTAAACCT-TTCATATTAAAAATAAGTTATATT
17937591 GTTATGGTGA
Statistics
Matches: 101, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
135 4 0.04
136 95 0.94
137 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.42
Consensus pattern (136 bp):
TTTATCTCTACTAATATTAAGTCGTTTACTAATTTCAGTGACACGAGTTAAGTGACACCAACTAA
GTTGGTTAAATTACCAATTAAACCTTTCATATTAAAAATAAGTTATATTATTACGATGCTATTTT
TATCTC
Found at i:17937788 original size:163 final size:164
Alignment explanation
Indices: 17937480--17937794 Score: 395
Period size: 163 Copynumber: 1.9 Consensus size: 164
17937470 TTATCTCTTT
* * *
17937480 ATCTCTACTAATATTAAGTCGTTTACTAATTTTGGTGACACGAGTTAAGTGACACCAACTCAATT
1 ATCTCTACTAATATTAAGTCGTTTAATAAGTTTGGTGACACAAGTTAAGTGACACCAACTCAATT
* * * * *
17937545 GGTTAAATTACTAATTAGCCTCTTCTTATTAAAAATAAGTTATATTGTTATGGTGATATTTCTAT
66 GGTTAAATTACTAATTAACCTCTTCATATTAAAAATAAGTTATACTATTATGATGATATTTCTAT
* * *
17937610 CTTTGCCTGTTTTTTAGGAAAACAAAAAAAATAC
131 CTTTGCATATTTTTTAAGAAAACAAAAAAAATAC
* *
17937644 ATCTCTACTAATA-TAAGTCGTTTAATGAGTTTGGTGACACAAGTTAAGTGACACCAA-TATAAT
1 ATCTCTACTAATATTAAGTCGTTTAATAAGTTTGGTGACACAAGTTAAGTGACACCAACT-CAAT
* * * * * *
17937707 TGGTTAATTTACTAATTAA-CTCTTTCATATTTAAATTAAGTTTTACTATTGTGATGATATTTTT
65 TGGTTAAATTACTAATTAACCTC-TTCATATTAAAAATAAGTTATACTATTATGATGATATTTCT
*
17937771 ATCATTT-TATATTTTTTAAGAAAA
129 ATC-TTTGCATATTTTTTAAGAAAA
17937795 TTAATAAAAA
Statistics
Matches: 128, Mismatches: 20, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
162 4 0.03
163 108 0.84
164 16 0.12
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (164 bp):
ATCTCTACTAATATTAAGTCGTTTAATAAGTTTGGTGACACAAGTTAAGTGACACCAACTCAATT
GGTTAAATTACTAATTAACCTCTTCATATTAAAAATAAGTTATACTATTATGATGATATTTCTAT
CTTTGCATATTTTTTAAGAAAACAAAAAAAATAC
Found at i:17938543 original size:16 final size:17
Alignment explanation
Indices: 17938522--17938556 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
17938512 GAAGCCCGAC
17938522 TTTGAAG-AAAAATCCA
1 TTTGAAGCAAAAATCCA
*
17938538 TTTGAAGCAAAATTCCA
1 TTTGAAGCAAAAATCCA
17938555 TT
1 TT
17938557 AGATCATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.31
Consensus pattern (17 bp):
TTTGAAGCAAAAATCCA
Found at i:17943479 original size:14 final size:13
Alignment explanation
Indices: 17943460--17943489 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
17943450 TATTTATTGC
17943460 TTCTCTTCTCTCTT
1 TTCTCTTCT-TCTT
17943474 TTCTCTTCTTCTT
1 TTCTCTTCTTCTT
17943487 TTC
1 TTC
17943490 ATTTTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (13 bp):
TTCTCTTCTTCTT
Found at i:17943485 original size:22 final size:22
Alignment explanation
Indices: 17943459--17943505 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
17943449 CTATTTATTG
17943459 CTTCTCTTC-TCTCTTTTCTCTT
1 CTTCTCTTCAT-TCTTTTCTCTT
* *
17943481 CTTCTTTTCATTTTTTTCTCTT
1 CTTCTCTTCATTCTTTTCTCTT
17943503 CTT
1 CTT
17943506 TAATTTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.68
Consensus pattern (22 bp):
CTTCTCTTCATTCTTTTCTCTT
Found at i:17946599 original size:20 final size:20
Alignment explanation
Indices: 17946570--17946639 Score: 86
Period size: 20 Copynumber: 3.5 Consensus size: 20
17946560 TACGGGATTA
*
17946570 CACTTTGGTGCCTCTACTTG
1 CACTTTGGTGCCTCTGCTTG
* * *
17946590 CACTTCGGTGCCGCTGTTTG
1 CACTTTGGTGCCTCTGCTTG
* *
17946610 AACTTTGGTGCCTTTGCTTG
1 CACTTTGGTGCCTCTGCTTG
17946630 CACTTTGGTG
1 CACTTTGGTG
17946640 TGTTTGGGAA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.09, C:0.26, G:0.26, T:0.40
Consensus pattern (20 bp):
CACTTTGGTGCCTCTGCTTG
Found at i:17948572 original size:27 final size:27
Alignment explanation
Indices: 17948535--17948744 Score: 264
Period size: 27 Copynumber: 7.8 Consensus size: 27
17948525 ATAACATTAA
*
17948535 GCAT-ATAGTCATTTTATAACATAGGG
1 GCATAATAGTCATTTTACAACATAGGG
*
17948561 GCATAATAGTCATTTTACAATATAGGG
1 GCATAATAGTCATTTTACAACATAGGG
** * *
17948588 GCATAACCGTTATTTTATAACATAGGG
1 GCATAATAGTCATTTTACAACATAGGG
*
17948615 GCATAATAGTCATTTTACCACAT-GAGG
1 GCATAATAGTCATTTTACAACATAG-GG
*
17948642 GCATAATAGTCATTTTACAATATAGGG
1 GCATAATAGTCATTTTACAACATAGGG
** *
17948669 GCATAACCGTCATTTTATAACATAGGG
1 GCATAATAGTCATTTTACAACATAGGG
*
17948696 GCATAATAGTCATTTTACCACAT-GAGG
1 GCATAATAGTCATTTTACAACATAG-GG
*
17948723 GCATAATAGTCATTTTATAACA
1 GCATAATAGTCATTTTACAACA
17948745 GTTTGGGGGT
Statistics
Matches: 156, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.04
27 149 0.96
28 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (27 bp):
GCATAATAGTCATTTTACAACATAGGG
Found at i:17948644 original size:81 final size:81
Alignment explanation
Indices: 17948535--17948739 Score: 360
Period size: 81 Copynumber: 2.5 Consensus size: 81
17948525 ATAACATTAA
**
17948535 GCAT-ATAGTCATTTTATAACAT-AGGGGCATAATAGTCATTTTACAATATAGGGGCATAACCGT
1 GCATAATAGTCATTTTACCACATGA-GGGCATAATAGTCATTTTACAATATAGGGGCATAACCGT
*
17948598 TATTTTATAACATAGGG
65 CATTTTATAACATAGGG
17948615 GCATAATAGTCATTTTACCACATGAGGGCATAATAGTCATTTTACAATATAGGGGCATAACCGTC
1 GCATAATAGTCATTTTACCACATGAGGGCATAATAGTCATTTTACAATATAGGGGCATAACCGTC
17948680 ATTTTATAACATAGGG
66 ATTTTATAACATAGGG
17948696 GCATAATAGTCATTTTACCACATGAGGGCATAATAGTCATTTTA
1 GCATAATAGTCATTTTACCACATGAGGGCATAATAGTCATTTTA
17948740 TAACAGTTTG
Statistics
Matches: 120, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
80 4 0.03
81 115 0.96
82 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.33
Consensus pattern (81 bp):
GCATAATAGTCATTTTACCACATGAGGGCATAATAGTCATTTTACAATATAGGGGCATAACCGTC
ATTTTATAACATAGGG
Found at i:17958461 original size:150 final size:154
Alignment explanation
Indices: 17958224--17958519 Score: 359
Period size: 150 Copynumber: 1.9 Consensus size: 154
17958214 TCTTGTACTA
* * * ** * *
17958224 CCAATGCCATATCCCAGATATGGTCTTACCTGAGAGTTCTCATATAGGTGCCCATGCCATGTCCC
1 CCAACGCCATATCCCAGACATGGTCTTACATGAGACCTCTCATATAGGTGCCAACGCCATGTCCC
* * * * * *
17958289 AGACATGGTCTTACGGGGGACCTCTC-A-C-C-TTGGTGCCAACGCCATGTCCCAGACATGGTCT
66 AAACATGGTCTTACAGGAGACCTCTCAATCTCAATGATGCCAACGCCATGTCCCAGACATGGCCT
17958350 TACATGGGACCTCTCATCTCGGTG
131 TACATGGGACCTCTCATCTCGGTG
* *
17958374 CCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCA-GTGCCAACGCCATGTCC
1 CCAACGCCATATCCCAGACATGGTCTTACATGAGACCTCTCATAT-AGGTGCCAACGCCATGTCC
* *
17958438 CAAACATGGTCTTACATGAGACCTCTCATAATCTCAATGATGCCAATGCCATGTCCCAGACATGG
65 CAAACATGGTCTTACAGGAGACCTCTC--AATCTCAATGATGCCAACGCCATGTCCCAGACATGG
* *
17958503 CCTTATATGGGATCTCT
128 CCTTACATGGGACCTCT
17958520 TTACCCAAAT
Statistics
Matches: 120, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
150 76 0.63
151 1 0.01
153 1 0.01
154 1 0.01
155 1 0.01
156 40 0.33
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (154 bp):
CCAACGCCATATCCCAGACATGGTCTTACATGAGACCTCTCATATAGGTGCCAACGCCATGTCCC
AAACATGGTCTTACAGGAGACCTCTCAATCTCAATGATGCCAACGCCATGTCCCAGACATGGCCT
TACATGGGACCTCTCATCTCGGTG
Found at i:17958489 original size:56 final size:50
Alignment explanation
Indices: 17958224--17958507 Score: 318
Period size: 50 Copynumber: 5.6 Consensus size: 50
17958214 TCTTGTACTA
* * * * ** *
17958224 CCAATGCCATATCCCAGATATGGTCTTACCTGAGAGTTCTCATAT-AGGTG
1 CCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCA-GTG
* * ** * * **
17958274 CCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCACCTTGGTG
1 CCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCAGTG
* *
17958324 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
1 CCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCAGTG
17958374 CCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCAGTG
1 CCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCAGTG
*
17958424 CCAACGCCATGTCCCAAACATGGTCTTACATGAGACCTCTCATAATCTCAATGATG
1 CCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTC---ATCTC-A-G-TG
* *
17958480 CCAATGCCATGTCCCAGACATGGCCTTA
1 CCAACGCCATGTCCCAGACATGGTCTTA
17958508 TATGGGATCT
Statistics
Matches: 204, Mismatches: 23, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
50 170 0.83
53 5 0.02
54 1 0.00
55 1 0.00
56 27 0.13
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.25
Consensus pattern (50 bp):
CCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCAGTG
Found at i:17965143 original size:50 final size:50
Alignment explanation
Indices: 17965088--17965208 Score: 143
Period size: 50 Copynumber: 2.4 Consensus size: 50
17965078 CAATGCCATA
* ** * *
17965088 TCCCAGATATGGTCTTACATGAGAGTTCTCATATAGGTGCCCATGCCACG
1 TCCCAGACATGGTCTTACATGAGACCTCTCATATAGGTGCCAACGCCACG
** * * * *
17965138 TCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGAGACCTCTCATATAGGTGCCAACGCCACG
17965188 TCCCAGACATGGTCTTACATG
1 TCCCAGACATGGTCTTACATG
17965209 GGATCTCTTT
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 58 1.00
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGAGACCTCTCATATAGGTGCCAACGCCACG
Found at i:17968612 original size:25 final size:25
Alignment explanation
Indices: 17968584--17968632 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
17968574 TTGTTTTTGA
* *
17968584 TAGTATTTCCTGAAACTACTATAGG
1 TAGTATATACTGAAACTACTATAGG
* *
17968609 TAGTATATATTGAGACTACTATAG
1 TAGTATATACTGAAACTACTATAG
17968633 ATACATTGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (25 bp):
TAGTATATACTGAAACTACTATAGG
Found at i:17976561 original size:43 final size:44
Alignment explanation
Indices: 17976500--17976596 Score: 187
Period size: 43 Copynumber: 2.2 Consensus size: 44
17976490 TCAATAATTG
17976500 TATATACCACAAGTTCAATGAGAGTAAGG-TCTATATTTGGTTT
1 TATATACCACAAGTTCAATGAGAGTAAGGTTCTATATTTGGTTT
17976543 TATATACCACAAGTTCAATGAGAGTAAGGTTCTATATTTGGTTT
1 TATATACCACAAGTTCAATGAGAGTAAGGTTCTATATTTGGTTT
17976587 TATATACCAC
1 TATATACCAC
17976597 TACTTATCAA
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 29 0.55
44 24 0.45
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.37
Consensus pattern (44 bp):
TATATACCACAAGTTCAATGAGAGTAAGGTTCTATATTTGGTTT
Found at i:17982451 original size:25 final size:25
Alignment explanation
Indices: 17982415--17982514 Score: 146
Period size: 25 Copynumber: 4.0 Consensus size: 25
17982405 TGGATATTCC
*
17982415 ACAGCTCGTGAGAGCATACCAATTT
1 ACAGCTCATGAGAGCATACCAATTT
*
17982440 ACAGCTCATGAGAGCATACCGATTT
1 ACAGCTCATGAGAGCATACCAATTT
*
17982465 ACAGCTCATGAGAGCATATCAATTT
1 ACAGCTCATGAGAGCATACCAATTT
* *
17982490 ACAGCTCGTGAGAGTATACCGAATT
1 ACAGCTCATGAGAGCATACC-AATT
17982515 ATAACTCCTG
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
25 63 0.94
26 4 0.06
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (25 bp):
ACAGCTCATGAGAGCATACCAATTT
Found at i:17982530 original size:50 final size:50
Alignment explanation
Indices: 17982423--17982533 Score: 150
Period size: 50 Copynumber: 2.2 Consensus size: 50
17982413 CCACAGCTCG
* *
17982423 TGAGAGCATACCAATTTACAGCTCATGAGAGCATACCGATTTACAGCTCA
1 TGAGAGCATACCAATTTACAGCTCATGAGAGCATACCGAATTACAACTCA
* * * * *
17982473 TGAGAGCATATCAATTTACAGCTCGTGAGAGTATACCGAATTATAACTCC
1 TGAGAGCATACCAATTTACAGCTCATGAGAGCATACCGAATTACAACTCA
*
17982523 TGTGAGCATAC
1 TGAGAGCATAC
17982534 ATGTACAGGA
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (50 bp):
TGAGAGCATACCAATTTACAGCTCATGAGAGCATACCGAATTACAACTCA
Found at i:17988555 original size:43 final size:42
Alignment explanation
Indices: 17988505--17988644 Score: 131
Period size: 43 Copynumber: 3.3 Consensus size: 42
17988495 TATCCCGGAT
* *
17988505 ATGGTCTTACATGTTAACACATTTCGATGCCACTGTCCCAGAC
1 ATGGTCTTACATGTT-ACTCATTTCGATGCCAATGTCCCAGAC
* * * * * *
17988548 AAGGTCTTATACG--ACTCATATACGATGTCAATGTCCCAAAC
1 ATGGTCTTACATGTTACTCAT-TTCGATGCCAATGTCCCAGAC
* * * *
17988589 ATGGTCTTACATGTTCTCTCACTTCGATGCCAATATCCTAGAC
1 ATGGTCTTACATGTT-ACTCATTTCGATGCCAATGTCCCAGAC
17988632 ATGGTCTTACATG
1 ATGGTCTTACATG
17988645 AAATCACATC
Statistics
Matches: 75, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
40 5 0.07
41 27 0.36
43 39 0.52
44 4 0.05
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGGTCTTACATGTTACTCATTTCGATGCCAATGTCCCAGAC
Found at i:17993623 original size:25 final size:25
Alignment explanation
Indices: 17993594--17993679 Score: 100
Period size: 25 Copynumber: 3.4 Consensus size: 25
17993584 TCCTGTACAT
*
17993594 GTATGCTCACACGAGTTGTAAATCG
1 GTATGCTCTCACGAGTTGTAAATCG
* * * * *
17993619 ATATGTTCTCACGAGCTATAAATTG
1 GTATGCTCTCACGAGTTGTAAATCG
* *
17993644 GTATGCTTTCACGAGTTGTATATCG
1 GTATGCTCTCACGAGTTGTAAATCG
17993669 GTATGCTCTCA
1 GTATGCTCTCA
17993680 TGAGCTGTGG
Statistics
Matches: 47, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.35
Consensus pattern (25 bp):
GTATGCTCTCACGAGTTGTAAATCG
Found at i:17999285 original size:21 final size:21
Alignment explanation
Indices: 17999247--17999331 Score: 84
Period size: 21 Copynumber: 4.0 Consensus size: 21
17999237 CTGATCAGTG
*
17999247 TACGACACATATGTGCCTGAA
1 TACGACACATAAGTGCCTGAA
*
17999268 -ACGACACATGAGGTGCCT-AA
1 TACGACACAT-AAGTGCCTGAA
*
17999288 TAGGACACATAAAGTGCCTGAGA
1 TACGACACAT-AAGTGCCTGA-A
*
17999311 TACGACACATAAAGTGTCTGA
1 TACGACACAT-AAGTGCCTGA
17999332 TGTACGAAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
20 11 0.20
21 22 0.41
22 1 0.02
23 20 0.37
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.20
Consensus pattern (21 bp):
TACGACACATAAGTGCCTGAA
Found at i:17999319 original size:23 final size:22
Alignment explanation
Indices: 17999247--17999354 Score: 96
Period size: 23 Copynumber: 5.0 Consensus size: 22
17999237 CTGATCAGTG
*
17999247 TACGACACAT-ATGTGCCTGAA
1 TACGACACATAAAGTGCCTGAA
* *
17999268 -ACGACACATGAGGTGCCT-AA
1 TACGACACATAAAGTGCCTGAA
*
17999288 TAGGACACATAAAGTGCCTGAGA
1 TACGACACATAAAGTGCCTGA-A
* *
17999311 TACGACACATAAAGTGTCTGATG
1 TACGACACATAAAGTGCCTGA-A
* * *
17999334 TACGAAAAATAAAGTGTCTGA
1 TACGACACATAAAGTGCCTGA
17999355 TCGGCAAAGC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
20 11 0.15
21 22 0.30
22 1 0.01
23 39 0.53
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (22 bp):
TACGACACATAAAGTGCCTGAA
Found at i:17999602 original size:36 final size:37
Alignment explanation
Indices: 17999562--17999644 Score: 98
Period size: 36 Copynumber: 2.3 Consensus size: 37
17999552 AAATTCACAT
* *
17999562 TTCAATTCAACTTCACTTTTTCACTTTCAA-TCAGA-A
1 TTCAATTCAAATTCACTTTTCCACTTTCAAGTCA-ATA
* *
17999598 TTCAATTCAAATTTACTTTTCCATTTTCAAGTCAATA
1 TTCAATTCAAATTCACTTTTCCACTTTCAAGTCAATA
*
17999635 TTCATTTCAA
1 TTCAATTCAA
17999645 TTCCACACAT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
36 27 0.68
37 13 0.32
ACGTcount: A:0.31, C:0.22, G:0.02, T:0.45
Consensus pattern (37 bp):
TTCAATTCAAATTCACTTTTCCACTTTCAAGTCAATA
Found at i:18000516 original size:25 final size:27
Alignment explanation
Indices: 18000479--18000538 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 27
18000469 ATAGTATAGT
*
18000479 TATTTTGAATTAATTTAATATAATTTATAA
1 TATTTT-AATTAA-ATAATAT-ATTTATAA
*
18000509 TATTTTAATTAAATAATATTTTTATAA
1 TATTTTAATTAAATAATATATTTATAA
18000536 TAT
1 TAT
18000539 AAATCAAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 10 0.36
28 6 0.21
29 6 0.21
30 6 0.21
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (27 bp):
TATTTTAATTAAATAATATATTTATAA
Found at i:18000540 original size:16 final size:17
Alignment explanation
Indices: 18000504--18000540 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
18000494 TAATATAATT
18000504 TATAATATTTTAATTAA
1 TATAATATTTTAATTAA
*
18000521 -ATAATATTTTTA-TAA
1 TATAATATTTTAATTAA
18000536 TATAA
1 TATAA
18000541 ATCAAGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 3 0.17
16 15 0.83
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TATAATATTTTAATTAA
Found at i:18006739 original size:23 final size:22
Alignment explanation
Indices: 18006631--18006738 Score: 123
Period size: 23 Copynumber: 5.0 Consensus size: 22
18006621 CTGATCAGTA
18006631 TACGACACAT-AAGTGCCTGA-
1 TACGACACATAAAGTGCCTGAG
* ** *
18006651 AACGACACACGAGGTGCCTGA-
1 TACGACACATAAAGTGCCTGAG
*
18006672 TACGACACATAAACTGCCTGAG
1 TACGACACATAAAGTGCCTGAG
18006694 ATACGACACATAAAGTGCCTGATG
1 -TACGACACATAAAGTGCCTGA-G
*
18006718 TACGACACGTAAAGTGCCTGA
1 TACGACACATAAAGTGCCTGA
18006739 TCGGCAAAGC
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
20 8 0.11
21 25 0.34
23 40 0.54
24 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (22 bp):
TACGACACATAAAGTGCCTGAG
Found at i:18006981 original size:25 final size:26
Alignment explanation
Indices: 18006940--18006990 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
18006930 TTATTTTGAA
*
18006940 TTAATTTAATATAA-TTTATAATATT
1 TTAATTAAATATAATTTTATAATATT
18006965 TTAATTAAATA-ACATTTTTATAATAT
1 TTAATTAAATATA-A-TTTTATAATAT
18006991 AAATCAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
24 1 0.05
25 11 0.50
27 10 0.45
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (26 bp):
TTAATTAAATATAATTTTATAATATT
Found at i:18008283 original size:18 final size:19
Alignment explanation
Indices: 18008260--18008297 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
18008250 CGTGCGTGAC
18008260 TTTCTTT-TCTTC-TTTCTT
1 TTTCTTTCT-TTCTTTTCTT
18008278 TTTCTTTCTTTCTTTTCTT
1 TTTCTTTCTTTCTTTTCTT
18008297 T
1 T
18008298 CTAATTTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTCTTTCTTTCTTTTCTT
Found at i:18008294 original size:13 final size:13
Alignment explanation
Indices: 18008259--18008299 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
18008249 TCGTGCGTGA
18008259 CTTTCTTTTC-TT
1 CTTTCTTTTCTTT
18008271 CTTTCTTTTTCTTT
1 CTTTC-TTTTCTTT
18008285 CTTTCTTTTCTTT
1 CTTTCTTTTCTTT
18008298 CT
1 CT
18008300 AATTTGTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 5 0.19
13 15 0.56
14 7 0.26
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
CTTTCTTTTCTTT
Found at i:18012959 original size:12 final size:12
Alignment explanation
Indices: 18012942--18012966 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
18012932 TTGCCAACAT
18012942 ATTCCTTTTGGA
1 ATTCCTTTTGGA
18012954 ATTCCTTTTGGA
1 ATTCCTTTTGGA
18012966 A
1 A
18012967 GAATTCCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.48
Consensus pattern (12 bp):
ATTCCTTTTGGA
Found at i:18013591 original size:83 final size:83
Alignment explanation
Indices: 18013452--18013621 Score: 286
Period size: 83 Copynumber: 2.0 Consensus size: 83
18013442 AGAAGTTTTT
** *
18013452 TAAAACAGTTACGTATTTGAGTAAACTTTATTAAAATGTTTGGTTCTTTTTAAAAACTTGATTAT
1 TAAAACAGTTACGTATTTGAGTAAACTTTATTAAAACATTTGGTTCTTTTTAAAAACTCGATTAT
* *
18013517 CTCTACTACTAGTAATTA
66 CCCTACTACTAGCAATTA
*
18013535 TAAAACAGTTACGTATTTGAGTAAATTTTATTAAAACATTTGGTTCTTTTTAAAAACTCGATTAT
1 TAAAACAGTTACGTATTTGAGTAAACTTTATTAAAACATTTGGTTCTTTTTAAAAACTCGATTAT
18013600 CCCTACTACTAGCAATTA
66 CCCTACTACTAGCAATTA
18013618 TAAA
1 TAAA
18013622 TCAAAACAAT
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
83 81 1.00
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.41
Consensus pattern (83 bp):
TAAAACAGTTACGTATTTGAGTAAACTTTATTAAAACATTTGGTTCTTTTTAAAAACTCGATTAT
CCCTACTACTAGCAATTA
Done.