Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62175169
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 981721 characters in sequence are not A, C, G, or T
File 87 of 202
Found at i:26017603 original size:24 final size:25
Alignment explanation
Indices: 26017541--26017603 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
26017531 AGCGCCCCGT
*
26017541 TAGCTCTCTC-GAGCTTCCTGTTATA
1 TAGCTCT-TCGGAGCTTCCCGTTATA
*
26017566 TAGTTCTT-GAGAGCTTCCCGTTA-A
1 TAGCTCTTCG-GAGCTTCCCGTTATA
26017590 TAGCTCTTCGGAGC
1 TAGCTCTTCGGAGC
26017604 ATCTCAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
24 13 0.41
25 19 0.59
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (25 bp):
TAGCTCTTCGGAGCTTCCCGTTATA
Found at i:26024615 original size:17 final size:17
Alignment explanation
Indices: 26024593--26024633 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
26024583 ATGAGTTCAT
*
26024593 ATGATTTTAGTTATTAG
1 ATGATTTTAGTTATTAC
*
26024610 ATGATTTTAGTTCTTAC
1 ATGATTTTAGTTATTAC
26024627 ATGATTT
1 ATGATTT
26024634 AGGGATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.27, C:0.05, G:0.15, T:0.54
Consensus pattern (17 bp):
ATGATTTTAGTTATTAC
Found at i:26025314 original size:25 final size:26
Alignment explanation
Indices: 26025286--26025349 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
26025276 ATAGTTCTTA
26025286 TGAGCTTCCCGATT-TTGGCTCTTCG
1 TGAGCTTCCCGATTATTGGCTCTTCG
* *
26025311 TGAGCTTTCCG-TTAATTGGCTCTTTG
1 TGAGCTTCCCGATT-ATTGGCTCTTCG
*
26025337 TGAGCTTCTCGAT
1 TGAGCTTCCCGAT
26025350 AAGGCTCGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 2 0.06
25 10 0.31
26 19 0.59
27 1 0.03
ACGTcount: A:0.11, C:0.23, G:0.23, T:0.42
Consensus pattern (26 bp):
TGAGCTTCCCGATTATTGGCTCTTCG
Found at i:26025767 original size:11 final size:11
Alignment explanation
Indices: 26025751--26025781 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
26025741 TATCTCTATT
26025751 ATTTGAAATGC
1 ATTTGAAATGC
26025762 ATTTGAAATGC
1 ATTTGAAATGC
26025773 ATTTGAAAT
1 ATTTGAAAT
26025782 ACATGACTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (11 bp):
ATTTGAAATGC
Found at i:26028063 original size:18 final size:16
Alignment explanation
Indices: 26028042--26028129 Score: 78
Period size: 15 Copynumber: 5.6 Consensus size: 16
26028032 TCTTTCTAGT
26028042 TTATTTTTATTTATTAAA
1 TTATTTTTATTT-TT-AA
*
26028060 TTA-TTTT-TCTTTAA
1 TTATTTTTATTTTTAA
26028074 TTAATTTTTATTTTTAA
1 TT-ATTTTTATTTTTAA
*
26028091 --ATTTATTATTTTTCA
1 TTATTT-TTATTTTTAA
*
26028106 TTATTTTTA-TATTAA
1 TTATTTTTATTTTTAA
26028121 TTATTTTTA
1 TTATTTTTA
26028130 ATTATTTTTC
Statistics
Matches: 59, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
14 8 0.14
15 25 0.42
16 9 0.15
17 14 0.24
18 3 0.05
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.69
Consensus pattern (16 bp):
TTATTTTTATTTTTAA
Found at i:26028083 original size:33 final size:31
Alignment explanation
Indices: 26028042--26028143 Score: 101
Period size: 33 Copynumber: 3.4 Consensus size: 31
26028032 TCTTTCTAGT
26028042 TTATTTTTATTTATTAAATTATTTTTCTTTAA
1 TTATTTTTATTTATTAAATTATTTTT-TTTAA
* *
26028074 TTAATTTTTATTT-TTAAATTTATTATTTTTCA
1 TT-ATTTTTATTTATTAAA-TTATTTTTTTTAA
26028106 TTATTTTTA--TATT-AATTA---TTTTTAA
1 TTATTTTTATTTATTAAATTATTTTTTTTAA
26028131 TTATTTTTCATTT
1 TTATTTTT-ATTT
26028144 TCTCTAGCCT
Statistics
Matches: 61, Mismatches: 3, Indels: 16
0.76 0.04 0.20
Matches are distributed among these distances:
25 14 0.23
26 1 0.02
28 4 0.07
29 3 0.05
30 2 0.03
31 7 0.11
32 13 0.21
33 17 0.28
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (31 bp):
TTATTTTTATTTATTAAATTATTTTTTTTAA
Found at i:26028113 original size:25 final size:25
Alignment explanation
Indices: 26028081--26028138 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
26028071 TAATTAATTT
* *
26028081 TTATTTTTAAATTTATTATTTTTCA
1 TTATTTTTAAATTAATTATTTTTAA
*
26028106 TTATTTTTATATTAATTATTTTTAA
1 TTATTTTTAAATTAATTATTTTTAA
26028131 TTATTTTT
1 TTATTTTT
26028139 CATTTTCTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.71
Consensus pattern (25 bp):
TTATTTTTAAATTAATTATTTTTAA
Found at i:26029286 original size:15 final size:16
Alignment explanation
Indices: 26029261--26029290 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
26029251 TTAATTTTTT
26029261 AAATCATTTTAATTAC
1 AAATCATTTTAATTAC
26029277 AAAT-ATTTTAATTA
1 AAATCATTTTAATTA
26029291 GTTTTCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (16 bp):
AAATCATTTTAATTAC
Found at i:26040068 original size:48 final size:47
Alignment explanation
Indices: 26039995--26040086 Score: 114
Period size: 48 Copynumber: 1.9 Consensus size: 47
26039985 TACTTTGCCT
*
26039995 AAAAAGGGGAAAGGACCAAGATGAAAACCCACAAAGGGCGCTTTTAA
1 AAAAAGGAGAAAGGACCAAGATGAAAACCCACAAAGGGCGCTTTTAA
* ***
26040042 AAAAAGGAGAGAGAGACCAA-AGTGAAAACTTGCAAAGGGCGCTTT
1 AAAAAGGAGAAAG-GACCAAGA-TGAAAACCCACAAAGGGCGCTTT
26040087 GAGCCGAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
47 12 0.32
48 26 0.68
ACGTcount: A:0.46, C:0.15, G:0.27, T:0.12
Consensus pattern (47 bp):
AAAAAGGAGAAAGGACCAAGATGAAAACCCACAAAGGGCGCTTTTAA
Found at i:26041952 original size:44 final size:44
Alignment explanation
Indices: 26041357--26041939 Score: 810
Period size: 44 Copynumber: 13.2 Consensus size: 44
26041347 ATCACAAAGC
* *
26041357 CCTATCTCCCTGACCAACAGTGGAATAGGTTGAAGATTGTAAGC
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGT
*
26041401 CCTATCTCCCTGACCAGCAGTGGAATAGGCTGAAGATTGTAAGT
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGT
* * * *
26041445 CCTAGCTCCCTGAACAGCAGTGGAATAGGTCGAAGATTGTAAGC
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGT
* *
26041489 CCTATCTCCCTGACCATCAGTGGAATAGGCTGAAGATTGTAAGT
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGT
* * * * * *
26041533 CCTAGCTCCCTGAACAGCAGTGGAATAAGTCGAAGATGGTAAGC
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGT
* *
26041577 CCTATCTCCCTGACTAGTAGTGGAATAGGTTGAAGATTGTAAGT
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGT
* * * * *
26041621 CCTATCTCCCTGACCAACAGTGGAATAGATCGAAGATGGTAAGC
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGT
** * *
26041665 CCTATCTCCCTGAATAGCAGTGGAATAGGTCGAAAATTGTAAGT
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGT
* * * * *
26041709 CCTAGCTCCTTGAACAGCAGTGGAATAGGTCGAAGATGGTAAG-
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGT
* *
26041752 CCATATCTCCCTAACCAGCAGTGGAATAGGTTGAAGATCGTAAGT
1 CC-TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGT
26041797 CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGT
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGT
**
26041841 CCTATCTCTTTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGT
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGT
26041885 CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGT-AGAT
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAG-T
*
26041929 CCTGTCTCCCT
1 CCTATCTCCCT
26041940 AAGCAGTAGT
Statistics
Matches: 474, Mismatches: 62, Indels: 6
0.87 0.11 0.01
Matches are distributed among these distances:
43 4 0.01
44 468 0.99
45 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (44 bp):
CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGT
Found at i:26046512 original size:48 final size:48
Alignment explanation
Indices: 26046460--26046551 Score: 114
Period size: 47 Copynumber: 1.9 Consensus size: 48
26046450 CACGATTTTC
*
26046460 ATTATGTGGCAGTATACCTACAATTTTGGTGGC-TTGTCCACAATATTG
1 ATTAT-TGGCAGTATACCTACAATTTTGGTGACATTGTCCACAATATTG
* * * * *
26046508 ATTATTGGCAGTTTATCTCCGATTTTGGTGACATTGTTCACAAT
1 ATTATTGGCAGTATACCTACAATTTTGGTGACATTGTCCACAAT
26046552 TTGGTGTGTT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
47 22 0.59
48 15 0.41
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (48 bp):
ATTATTGGCAGTATACCTACAATTTTGGTGACATTGTCCACAATATTG
Found at i:26048225 original size:20 final size:20
Alignment explanation
Indices: 26048186--26048225 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26048176 TTTGGACTAA
*
26048186 GGACTAAATCCTAATAAATT
1 GGACTAAATCCGAATAAATT
26048206 GGACTAAAT-CGAATAGAATT
1 GGACTAAATCCGAATA-AATT
26048226 AAAAACTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.28
Consensus pattern (20 bp):
GGACTAAATCCGAATAAATT
Found at i:26050448 original size:19 final size:19
Alignment explanation
Indices: 26050421--26050464 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
26050411 TTTATGTTTT
26050421 ATTTA-TTTATTTACTTA-A
1 ATTTATTTTATTT-CTTATA
*
26050439 ATTTATTTTATTTTTTATA
1 ATTTATTTTATTTCTTATA
26050458 ATTTATT
1 ATTTATT
26050465 AATGCGGAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (19 bp):
ATTTATTTTATTTCTTATA
Found at i:26059460 original size:20 final size:20
Alignment explanation
Indices: 26059435--26059473 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
26059425 TTATAAACCG
26059435 AATCAAACCATACCTTTCTA
1 AATCAAACCATACCTTTCTA
*
26059455 AATCAAACCATATCTTTCT
1 AATCAAACCATACCTTTCT
26059474 GAGACCTTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.33
Consensus pattern (20 bp):
AATCAAACCATACCTTTCTA
Found at i:26060512 original size:21 final size:21
Alignment explanation
Indices: 26060462--26060505 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
26060452 GGGTCTACAC
* *
26060462 GCCCATGTGAAGGCCACACGT
1 GCCCCTGTGAAAGCCACACGT
26060483 GCCCCTGTGAAAGCCACACGT
1 GCCCCTGTGAAAGCCACACGT
26060504 GC
1 GC
26060506 TTGTGTGCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.36, G:0.27, T:0.14
Consensus pattern (21 bp):
GCCCCTGTGAAAGCCACACGT
Found at i:26062828 original size:21 final size:20
Alignment explanation
Indices: 26062804--26062843 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
26062794 ATCTTATAAT
26062804 ATTTGGAAAAATATAATTTTA
1 ATTT-GAAAAATATAATTTTA
* *
26062825 ATTTGATAAATATTATTTT
1 ATTTGAAAAATATAATTTT
26062844 TTTAAAACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.50
Consensus pattern (20 bp):
ATTTGAAAAATATAATTTTA
Found at i:26063092 original size:14 final size:15
Alignment explanation
Indices: 26063065--26063093 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26063055 AAATAAAAAT
26063065 TAAAACCAAATAATA
1 TAAAACCAAATAATA
26063080 TAAAACC-AATAATA
1 TAAAACCAAATAATA
26063094 AAAGTCCAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.66, C:0.14, G:0.00, T:0.21
Consensus pattern (15 bp):
TAAAACCAAATAATA
Found at i:26063607 original size:14 final size:14
Alignment explanation
Indices: 26063590--26063619 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26063580 TCTTTCTCTC
26063590 TTTTCGTTTCTTTT
1 TTTTCGTTTCTTTT
*
26063604 TTTTCTTTTCTTTT
1 TTTTCGTTTCTTTT
26063618 TT
1 TT
26063620 ATATTATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.13, G:0.03, T:0.83
Consensus pattern (14 bp):
TTTTCGTTTCTTTT
Found at i:26064245 original size:3 final size:3
Alignment explanation
Indices: 26064237--26064288 Score: 59
Period size: 3 Copynumber: 17.3 Consensus size: 3
26064227 TTCAGTTTAA
* * * * *
26064237 TAT TAT TAT TAT TAC TAG TAT TAT TAT TAT TAC TAT TAT TAG TAG TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26064285 TAT T
1 TAT T
26064289 TTTTTATCAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:26064258 original size:18 final size:18
Alignment explanation
Indices: 26064237--26064277 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
26064227 TTCAGTTTAA
26064237 TATTATTATTATTACTAG
1 TATTATTATTATTACTAG
*
26064255 TATTATTATTATTACTAT
1 TATTATTATTATTACTAG
26064273 TATTA
1 TATTA
26064278 GTAGTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (18 bp):
TATTATTATTATTACTAG
Found at i:26064392 original size:21 final size:24
Alignment explanation
Indices: 26064338--26064392 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 24
26064328 TTATTATGTG
26064338 GTATTATTTTAAGTTTTCCATATAT
1 GTATTATTTTAAG-TTTCCATATAT
26064363 -TATTA-TTTAA-TTT-CATA-AT
1 GTATTATTTTAAGTTTCCATATAT
26064382 GTATTATTTTA
1 GTATTATTTTA
26064393 TATATATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
19 2 0.07
20 9 0.32
21 7 0.25
23 5 0.18
24 5 0.18
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.58
Consensus pattern (24 bp):
GTATTATTTTAAGTTTCCATATAT
Found at i:26068590 original size:14 final size:14
Alignment explanation
Indices: 26068571--26068604 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
26068561 CAAAATGAAA
*
26068571 GTGGAAGATCTTAT
1 GTGGAAGACCTTAT
26068585 GTGGAAGACCTTAT
1 GTGGAAGACCTTAT
*
26068599 CTGGAA
1 GTGGAA
26068605 TAGCATTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (14 bp):
GTGGAAGACCTTAT
Found at i:26068691 original size:15 final size:14
Alignment explanation
Indices: 26068669--26068720 Score: 59
Period size: 16 Copynumber: 3.4 Consensus size: 14
26068659 CAGATTCAAT
26068669 AAAAAAAAGAAGAAC
1 AAAAAAAA-AAGAAC
26068684 AGAAAAAAAAAGAAC
1 A-AAAAAAAAAGAAC
26068699 AAAAAACAAAAAGAAAC
1 -AAAAA-AAAAAG-AAC
26068716 AAAAA
1 AAAAA
26068721 TCTCTACCGG
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
15 11 0.33
16 19 0.58
17 3 0.09
ACGTcount: A:0.83, C:0.08, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAGAAC
Found at i:26068716 original size:17 final size:15
Alignment explanation
Indices: 26068669--26068720 Score: 68
Period size: 15 Copynumber: 3.3 Consensus size: 15
26068659 CAGATTCAAT
*
26068669 AAAAAAAAGAAGAAC
1 AAAAAAAAAAAGAAC
*
26068684 AGAAAAAAAAAGAAC
1 AAAAAAAAAAAGAAC
26068699 AAAAAACAAAAAGAAAC
1 AAAAAA-AAAAAG-AAC
26068716 AAAAA
1 AAAAA
26068721 TCTCTACCGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
15 18 0.56
16 6 0.19
17 8 0.25
ACGTcount: A:0.83, C:0.08, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAGAAC
Found at i:26070716 original size:88 final size:87
Alignment explanation
Indices: 26070532--26070735 Score: 284
Period size: 88 Copynumber: 2.3 Consensus size: 87
26070522 ATCTCATCTC
* * * * * *
26070532 ATCTCCCTAAGCAGCAGTGAAGTAGGTTAAAAATAGCAGATCTTTTCTTCATGTATTGGTAGCGA
1 ATCTCCCTGA-CAGTAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCATGTATCGGCAGCGA
26070597 AATAGATCGAAGACACCAGCCTT
65 AATAGATCGAAGACACCAGCCTT
*
26070620 ATCTCCCTGATCAGTAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATCGGCAGCGA
1 ATCTCCCTGA-CAGTAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCATGTATCGGCAGCGA
*
26070685 AGTAGATCGAAGAC-CTCAGCCTT
65 AATAGATCGAAGACAC-CAGCCTT
*
26070708 ATCTCCCTGGACAGTAGTGGAATAGGTT
1 ATCTCCCT-GACAGTAGTGGAGTAGGTT
26070736 GAAGATTGTA
Statistics
Matches: 104, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
87 1 0.01
88 101 0.97
89 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (87 bp):
ATCTCCCTGACAGTAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCATGTATCGGCAGCGAA
ATAGATCGAAGACACCAGCCTT
Found at i:26070897 original size:44 final size:44
Alignment explanation
Indices: 26070834--26071185 Score: 302
Period size: 44 Copynumber: 8.0 Consensus size: 44
26070824 TTAAGCCGCC
* * *
26070834 AGTCCTACCTTCCTGGACAGTAGTGGAATAGGTTGAAGATTGTA
1 AGTCCTATCTCCCTAGACAGTAGTGGAATAGGTTGAAGATTGTA
* * *
26070878 AGTCTTATCTCCCTAGACAGCAGTGGAATAGGTTGAAGGTTGTA
1 AGTCCTATCTCCCTAGACAGTAGTGGAATAGGTTGAAGATTGTA
* *
26070922 AGTCCTATCTCCCTGGACTGTAGTGGAATAGGTTGAAGATTGT-
1 AGTCCTATCTCCCTAGACAGTAGTGGAATAGGTTGAAGATTGTA
* ** ** ** *
26070965 AGATCCTGTCTCCCTA-AGCAGTAGTGGAGCAAATCAAAGATGGTGA
1 AG-TCCTATCTCCCTAGA-CAGTAGTGGAATAGGTTGAAGATTGT-A
* * * ** * * * *****
26071011 A-TCTTATCTTCATAGGGTAGTAG-GGAAGCAGATTTAAG-CCACC
1 AGTCCTATCTCCCTA-GACAGTAGTGGAA-TAGGTTGAAGATTGTA
* * *
26071054 AGTCCTATCTCCCTGGACAGCAATGGAATAGGTTGAAGATTGTA
1 AGTCCTATCTCCCTAGACAGTAGTGGAATAGGTTGAAGATTGTA
*
26071098 AGTCCTATCTCCCTGGACAGTAGTGGAATAGGTTGAAGATTGTA
1 AGTCCTATCTCCCTAGACAGTAGTGGAATAGGTTGAAGATTGTA
*
26071142 AGTCCTATATCCC-AGGACAGTAGTGGAATAGGTTGAAGATTGTA
1 AGTCCTATCTCCCTA-GACAGTAGTGGAATAGGTTGAAGATTGTA
26071186 GATCCTGTCT
Statistics
Matches: 241, Mismatches: 56, Indels: 22
0.76 0.18 0.07
Matches are distributed among these distances:
43 15 0.06
44 213 0.88
45 12 0.05
46 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (44 bp):
AGTCCTATCTCCCTAGACAGTAGTGGAATAGGTTGAAGATTGTA
Found at i:26071013 original size:220 final size:220
Alignment explanation
Indices: 26070707--26071287 Score: 883
Period size: 220 Copynumber: 2.6 Consensus size: 220
26070697 ACCTCAGCCT
* * * *
26070707 TATCTCCCTGGACAGTAGTGGAATAGGTTGAAGATTGTAGATCATGTCTGCCTAAACAATAGTGG
1 TATCTCCCTGGACAGTAGTGGAATAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGG
* * * * *
26070772 AACAGATAAAAGACGGTGAATCTTATCTTCCCAATGTAGTAGGGAAGTAGATTTAAGCCGCCAGT
66 AGCAGATCAAAGATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCGCCAGT
* * * *
26070837 CCTACCTTCCTGGACAGTAGTGGAATAGGTTGAAGATTGTAAGTCTTATCTCCCTAGACAGCAGT
131 CCTACCTCCCTGGACAGCAATGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGACAGCAGT
*
26070902 GGAATAGGTTGAAGGTTGTAAGTCC
196 GGAATAGGTTGAAGATTGTAAGTCC
*
26070927 TATCTCCCTGGACTGTAGTGGAATAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGG
1 TATCTCCCTGGACAGTAGTGGAATAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGG
* ** * *
26070992 AGCAAATCAAAGATGGTGAATCTTATCTTCATAGGGTAGTAGGGAAGCAGATTTAAGCCACCAGT
66 AGCAGATCAAAGATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCGCCAGT
* * *
26071057 CCTATCTCCCTGGACAGCAATGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGACAGTAGT
131 CCTACCTCCCTGGACAGCAATGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGACAGCAGT
26071122 GGAATAGGTTGAAGATTGTAAGTCC
196 GGAATAGGTTGAAGATTGTAAGTCC
* * ** *
26071147 TATATCCCAGGACAGTAGTGGAATAGGTTGAAGATTGTAGATCCTGTCTCTTTAAGCAGTAGTGA
1 TATCTCCCTGGACAGTAGTGGAATAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGG
* *
26071212 AGCAGATCAAAGATGGTGAATCTTATCTACCCAAGGTAGTAGGGAAGCAGATTTAAGCCGCCAGC
66 AGCAGATCAAAGATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCGCCAGT
*
26071277 CCTATCTCCCT
131 CCTACCTCCCT
26071288 AGTTGCAGTG
Statistics
Matches: 325, Mismatches: 36, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
220 325 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (220 bp):
TATCTCCCTGGACAGTAGTGGAATAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGG
AGCAGATCAAAGATGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCGCCAGT
CCTACCTCCCTGGACAGCAATGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGACAGCAGT
GGAATAGGTTGAAGATTGTAAGTCC
Found at i:26071225 original size:88 final size:88
Alignment explanation
Indices: 26071054--26071225 Score: 188
Period size: 88 Copynumber: 2.0 Consensus size: 88
26071044 TTAAGCCACC
* * *
26071054 AGTCCTATCTCCCTGGACAGCAATGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGACAGT
1 AGTCCTATATCCCAGGACAGCAATGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGACAGT
* * **
26071119 AGTGGAATAGGTTGAAGATTGTA
66 AGTGGAACAGATCAAAGATTGTA
* * * **
26071142 AGTCCTATATCCCAGGACAGTAGTGGAATAGGTTGAAGATTGT-AGATCCTGTCTCTTTA-AGCA
1 AGTCCTATATCCCAGGACAGCAATGGAATAGGTTGAAGATTGTAAG-TCCTATCTCCCTAGA-CA
26071205 GTAGT-GAAGCAGATCAAAGAT
64 GTAGTGGAA-CAGATCAAAGAT
26071226 GGTGAATCTT
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
87 6 0.09
88 63 0.91
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (88 bp):
AGTCCTATATCCCAGGACAGCAATGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGACAGT
AGTGGAACAGATCAAAGATTGTA
Found at i:26072009 original size:18 final size:18
Alignment explanation
Indices: 26071983--26072017 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26071973 TACCTGCACA
*
26071983 CAAACAAACAACAAAGAG
1 CAAACAAACAAAAAAGAG
*
26072001 CAAAGAAACAAAAAAGA
1 CAAACAAACAAAAAAGA
26072018 ACGCAGCAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.17, G:0.11, T:0.00
Consensus pattern (18 bp):
CAAACAAACAAAAAAGAG
Found at i:26072884 original size:3 final size:3
Alignment explanation
Indices: 26072876--26072924 Score: 62
Period size: 3 Copynumber: 16.3 Consensus size: 3
26072866 TTCAGTTTAA
* * * *
26072876 TAT TAT TAT TAC TAG TAT TAT TAT TAT TAC TAT TAT TAT TAG TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26072924 T
1 T
26072925 TTTTTATCAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:26072897 original size:18 final size:18
Alignment explanation
Indices: 26072876--26072922 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
26072866 TTCAGTTTAA
26072876 TATTATTATTACTAGTAT
1 TATTATTATTACTAGTAT
*
26072894 TATTATTATTACTATTAT
1 TATTATTATTACTAGTAT
*
26072912 TATTAGTATTA
1 TATTATTATTA
26072923 TTTTTTTATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.57
Consensus pattern (18 bp):
TATTATTATTACTAGTAT
Found at i:26080260 original size:20 final size:20
Alignment explanation
Indices: 26080237--26080292 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
26080227 CAAATGCTCT
26080237 TTTAAATCAATTCATTATTA
1 TTTAAATCAATTCATTATTA
* **
26080257 TTTAAATCGATTGTTTATTA
1 TTTAAATCAATTCATTATTA
*
26080277 TTTGAATCAATTCATT
1 TTTAAATCAATTCATT
26080293 GTGGTTTAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.34, C:0.09, G:0.05, T:0.52
Consensus pattern (20 bp):
TTTAAATCAATTCATTATTA
Found at i:26094863 original size:4 final size:4
Alignment explanation
Indices: 26094854--26094898 Score: 54
Period size: 4 Copynumber: 11.2 Consensus size: 4
26094844 TATCAAAAAG
* * * *
26094854 TGTA TGTA TGCA TGTA TGCA TGTA TGCA TGTA TGCA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
26094899 ATTTTATTCA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.24, C:0.09, G:0.24, T:0.42
Consensus pattern (4 bp):
TGTA
Found at i:26094870 original size:8 final size:8
Alignment explanation
Indices: 26094857--26094895 Score: 78
Period size: 8 Copynumber: 4.9 Consensus size: 8
26094847 CAAAAAGTGT
26094857 ATGTATGC
1 ATGTATGC
26094865 ATGTATGC
1 ATGTATGC
26094873 ATGTATGC
1 ATGTATGC
26094881 ATGTATGC
1 ATGTATGC
26094889 ATGTATG
1 ATGTATG
26094896 TATATTTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.38
Consensus pattern (8 bp):
ATGTATGC
Found at i:26103499 original size:39 final size:39
Alignment explanation
Indices: 26103456--26103572 Score: 119
Period size: 39 Copynumber: 3.0 Consensus size: 39
26103446 GAGTCTCCTG
* * **
26103456 CTTCAACTTCACTGCTTAACAGTGCTAAACTGGACTCTA
1 CTTCAACTTCACTGGTTAACAATGCTAAACCAGACTCTA
* * *
26103495 CTTCATA-TTCACCGGTTAACACTGCTAATCCAGACTCTA
1 CTTCA-ACTTCACTGGTTAACAATGCTAAACCAGACTCTA
* * * *
26103534 CTTCTACTTCACTGGTTATCAATGCTAAGCCAGAATCTA
1 CTTCAACTTCACTGGTTAACAATGCTAAACCAGACTCTA
26103573 AAGCTAGTCT
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
38 1 0.02
39 62 0.97
40 1 0.02
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.32
Consensus pattern (39 bp):
CTTCAACTTCACTGGTTAACAATGCTAAACCAGACTCTA
Found at i:26110237 original size:30 final size:29
Alignment explanation
Indices: 26110194--26110251 Score: 107
Period size: 30 Copynumber: 2.0 Consensus size: 29
26110184 AAGGAAATAA
26110194 ATCCTAATTCCTAAGAATCAGTAATTGAT
1 ATCCTAATTCCTAAGAATCAGTAATTGAT
26110223 ATCCTAATTTCCTAAGAATCAGTAATTGA
1 ATCCTAA-TTCCTAAGAATCAGTAATTGA
26110252 GATTAGTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 7 0.25
30 21 0.75
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.34
Consensus pattern (29 bp):
ATCCTAATTCCTAAGAATCAGTAATTGAT
Found at i:26114928 original size:3 final size:3
Alignment explanation
Indices: 26114920--26114972 Score: 79
Period size: 3 Copynumber: 17.7 Consensus size: 3
26114910 TTGCACCGCG
* * *
26114920 ATA ATA ATA ATG ATA ATA ATG ATA ATA ATA ATA ATA TTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
26114968 ATA AT
1 ATA AT
26114973 TGTTTATTGC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:26122437 original size:18 final size:18
Alignment explanation
Indices: 26122411--26122449 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
26122401 CCAAGGAAAA
26122411 TAAGAAAAAGCTATAATC
1 TAAGAAAAAGCTATAATC
*
26122429 TAAGGAAAAGCTATAATC
1 TAAGAAAAAGCTATAATC
26122447 TAA
1 TAA
26122450 TTGTTCTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.54, C:0.10, G:0.13, T:0.23
Consensus pattern (18 bp):
TAAGAAAAAGCTATAATC
Found at i:26129124 original size:18 final size:18
Alignment explanation
Indices: 26129097--26129135 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
26129087 AAAGCCATTC
*
26129097 ATTCATACATTTAGGTAA
1 ATTCACACATTTAGGTAA
26129115 ATTCACACATTTAGGTAA
1 ATTCACACATTTAGGTAA
26129133 ATT
1 ATT
26129136 GCATCTAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.38
Consensus pattern (18 bp):
ATTCACACATTTAGGTAA
Found at i:26144469 original size:114 final size:114
Alignment explanation
Indices: 26144279--26144500 Score: 417
Period size: 114 Copynumber: 1.9 Consensus size: 114
26144269 CAGCATATAT
*
26144279 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATGAATTGAAATTAGT
1 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATAAATTGAAATTAGT
26144344 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATATATGTAA
66 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATATATGTAA
* *
26144393 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTGAAAGTATATAAATTGAAATTAGT
1 ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATAAATTGAAATTAGT
26144458 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATAT
66 TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATAT
26144501 GTATATATGA
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
114 105 1.00
ACGTcount: A:0.41, C:0.04, G:0.14, T:0.41
Consensus pattern (114 bp):
ATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAATATATAAATTGAAATTAGT
TAAGTATGAATGTTATATATATGCATAAATGAAGTTCGAATATATGTAA
Found at i:26145036 original size:41 final size:41
Alignment explanation
Indices: 26144985--26145131 Score: 197
Period size: 41 Copynumber: 3.6 Consensus size: 41
26144975 CAGACTTTAC
* *
26144985 GTCTAGCAGGCTAAGTACCGGTGATCTGAAACAGGCTATAA
1 GTCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAA
* *
26145026 GTCTAGCAGGCTAAGTGCCGATGATCTGAATCAGGTTATAA
1 GTCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAA
** * *
26145067 ACCTAGTAGGCTAAGTGTCGGTGATCTGAATCAGGCTATAA
1 GTCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAA
*
26145108 G-CTTAGCAGGTTAAGTGCCGGTGA
1 GTC-TAGCAGGCTAAGTGCCGGTGA
26145132 ATATGTTAAA
Statistics
Matches: 91, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 1 0.01
41 90 0.99
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (41 bp):
GTCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAA
Found at i:26146632 original size:18 final size:18
Alignment explanation
Indices: 26146600--26146665 Score: 87
Period size: 18 Copynumber: 3.6 Consensus size: 18
26146590 CTGTTTTTGT
26146600 TATGATTTTTTTGTTGAGA
1 TATGA-TTTTTTGTTGAGA
* *
26146619 TATGATTTTCTGTTGATA
1 TATGATTTTTTGTTGAGA
*
26146637 TCTGATTTTTTGTTGAGA
1 TATGATTTTTTGTTGAGA
*
26146655 TGTGATTTTTT
1 TATGATTTTTT
26146666 CTATTGAGAT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
18 36 0.88
19 5 0.12
ACGTcount: A:0.18, C:0.03, G:0.20, T:0.59
Consensus pattern (18 bp):
TATGATTTTTTGTTGAGA
Found at i:26151310 original size:24 final size:23
Alignment explanation
Indices: 26151263--26151306 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
26151253 GCACGTAAAT
*
26151263 TATTTAAAATATAAATATTATAA
1 TATTTAAAATAAAAATATTATAA
26151286 TATTTAATAATAAAAAT-TTAT
1 TATTTAA-AATAAAAATATTAT
26151307 TAATGAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TATTTAAAATAAAAATATTATAA
Found at i:26152406 original size:2 final size:2
Alignment explanation
Indices: 26152401--26152429 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
26152391 TGCGTGTGTG
26152401 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26152430 GGAAAATATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26153619 original size:9 final size:9
Alignment explanation
Indices: 26153602--26153632 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
26153592 TCGAGTTGAT
26153602 TCGAATAAC
1 TCGAATAAC
*
26153611 TCGATTAAC
1 TCGAATAAC
26153620 TCGAATAAC
1 TCGAATAAC
26153629 TCGA
1 TCGA
26153633 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:26157335 original size:22 final size:22
Alignment explanation
Indices: 26157307--26157351 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
26157297 GATCCTTAAC
26157307 TTTGAAAGTAATTTAATGAAAT
1 TTTGAAAGTAATTTAATGAAAT
26157329 TTTGAAAGTAATTTAATGAAAT
1 TTTGAAAGTAATTTAATGAAAT
26157351 T
1 T
26157352 CAAGCTTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.42
Consensus pattern (22 bp):
TTTGAAAGTAATTTAATGAAAT
Found at i:26157904 original size:16 final size:16
Alignment explanation
Indices: 26157883--26157924 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
26157873 TTATTAAATT
*
26157883 ATATATTTTAATTATA
1 ATATATTTTAATAATA
26157899 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
26157914 AT-TATGTTTAA
1 ATATAT-TTTAA
26157925 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:26157909 original size:15 final size:15
Alignment explanation
Indices: 26157874--26157915 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
26157864 TTAAGAATTT
*
26157874 TATTAAATTAT-ATA
1 TATTTAATTATAATA
26157888 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
26157902 TATTTAATAATAAT
1 TATTTAATTATAAT
26157916 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:26158152 original size:45 final size:44
Alignment explanation
Indices: 26158069--26158158 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 44
26158059 ACCTCTATTC
*
26158069 CATTCAACCAAACACAAGATTACTATTACGCCTGTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
* *
26158113 CATTCAACCAAACA-ATTGATTTGCTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACA-AGA-TTACTATTACGCCTCTATTCCATTA
26158158 C
1 C
26158159 GCCTCTAATC
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 16 0.39
45 24 0.59
ACGTcount: A:0.33, C:0.28, G:0.07, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
Found at i:26158159 original size:16 final size:16
Alignment explanation
Indices: 26158138--26158202 Score: 103
Period size: 16 Copynumber: 4.1 Consensus size: 16
26158128 TTGATTTGCT
*
26158138 ATTACGCCTCTATTCC
1 ATTACGCCTCTAATCC
*
26158154 ATTACGCCTCTAATCT
1 ATTACGCCTCTAATCC
26158170 ATTACGCCTCTAATCC
1 ATTACGCCTCTAATCC
*
26158186 ATTACGCCTCTATTCC
1 ATTACGCCTCTAATCC
26158202 A
1 A
26158203 ATACAGCGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.23, C:0.35, G:0.06, T:0.35
Consensus pattern (16 bp):
ATTACGCCTCTAATCC
Found at i:26158177 original size:32 final size:32
Alignment explanation
Indices: 26158136--26158197 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
26158126 AATTGATTTG
*
26158136 CTATTACGCCTCTATTCCATTACGCCTCTAAT
1 CTATTACGCCTCTAATCCATTACGCCTCTAAT
26158168 CTATTACGCCTCTAATCCATTACGCCTCTA
1 CTATTACGCCTCTAATCCATTACGCCTCTA
26158198 TTCCAATACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.23, C:0.35, G:0.06, T:0.35
Consensus pattern (32 bp):
CTATTACGCCTCTAATCCATTACGCCTCTAAT
Found at i:26166093 original size:6 final size:6
Alignment explanation
Indices: 26166082--26166107 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
26166072 CTGGTACAAG
26166082 TTTGAA TTTGAA TTTGAA TTTGAA TT
1 TTTGAA TTTGAA TTTGAA TTTGAA TT
26166108 GCTACACGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (6 bp):
TTTGAA
Found at i:26180665 original size:3 final size:3
Alignment explanation
Indices: 26180657--26180684 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
26180647 AAAGATCCTA
26180657 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
26180685 TCCCATAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:26183059 original size:27 final size:27
Alignment explanation
Indices: 26183018--26183189 Score: 188
Period size: 27 Copynumber: 6.4 Consensus size: 27
26183008 GTAATGGGCC
* *
26183018 TAAAATGATTGAAATACCCTTGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
*
26183045 TAAAATGACTAAAATACCCTCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
*
26183072 TAAAATGA-TCAAAATACCCTCGAAGGG
1 TAAAATGACT-GAAATACCCTCGAAGGG
* *
26183099 TAAAATGA-TCGAAATACCCCCGAAGGA
1 TAAAATGACT-GAAATACCCTCGAAGGG
* **
26183126 TAAAATAACTGAAATACCGGCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* * *
26183153 TAAGATGACCGAAATACTC-CGAAAGGG
1 TAAAATGACTGAAATACCCTCG-AAGGG
26183180 TAAAATGACT
1 TAAAATGACT
26183190 ATTATACCAC
Statistics
Matches: 125, Mismatches: 17, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
26 3 0.02
27 121 0.97
28 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.21, T:0.19
Consensus pattern (27 bp):
TAAAATGACTGAAATACCCTCGAAGGG
Found at i:26183197 original size:81 final size:81
Alignment explanation
Indices: 26183018--26183187 Score: 216
Period size: 81 Copynumber: 2.1 Consensus size: 81
26183008 GTAATGGGCC
* ** * * * *
26183018 TAAAATGATTGAAATACCCTTGAAGGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGATCA
1 TAAAATGATCGAAATACCCCCGAAGGATAAAATAACTAAAATACCCGCGAAGGGTAAAATGACCA
26183083 AAATACCCTCGAAGGG
66 AAATACCCTCGAAGGG
* * * *
26183099 TAAAATGATCGAAATACCCCCGAAGGATAAAATAACTGAAATACCGGCGAAGGGTAAGATGACCG
1 TAAAATGATCGAAATACCCCCGAAGGATAAAATAACTAAAATACCCGCGAAGGGTAAAATGACCA
*
26183164 AAATACTC-CGAAAGGG
66 AAATACCCTCG-AAGGG
26183180 TAAAATGA
1 TAAAATGA
26183188 CTATTATACC
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
80 2 0.03
81 74 0.97
ACGTcount: A:0.44, C:0.16, G:0.21, T:0.18
Consensus pattern (81 bp):
TAAAATGATCGAAATACCCCCGAAGGATAAAATAACTAAAATACCCGCGAAGGGTAAAATGACCA
AAATACCCTCGAAGGG
Found at i:26183584 original size:28 final size:28
Alignment explanation
Indices: 26183553--26183613 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
26183543 CCCACACTAG
* *
26183553 TACTGCTTAGGGCTCAAGCCTAGACTGT
1 TACTGCTTAGGGATCAAGCCCAGACTGT
* *
26183581 TACTGCTTAGGGATCAGGCCCAGATTGT
1 TACTGCTTAGGGATCAAGCCCAGACTGT
26183609 TACTG
1 TACTG
26183614 TATGTCGTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (28 bp):
TACTGCTTAGGGATCAAGCCCAGACTGT
Found at i:26186087 original size:27 final size:27
Alignment explanation
Indices: 26186049--26186297 Score: 276
Period size: 27 Copynumber: 9.3 Consensus size: 27
26186039 GTAATGGGCC
*
26186049 TAAAATGACAGAAATACCCTCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
*
26186076 TAAAATGACAGAAATACCCTCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
*
26186103 TAAAATGA-TCGAAATACACTCGAAGGG
1 TAAAATGACT-GAAATACCCTCGAAGGG
*
26186130 TAAAATGACTGAAATACCCTTGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* *
26186157 TAAAATGACTGAAATACCCTCAAAAGG
1 TAAAATGACTGAAATACCCTCGAAGGG
*
26186184 TAAAATGA-TGAAAATACCTTC-AAGGG
1 TAAAATGACTG-AAATACCCTCGAAGGG
* * *
26186210 TAAAATGACCGAAATACCTTTGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* * *
26186237 TAAAATAACCGAAATACCC-CTGAAAGG
1 TAAAATGACTGAAATACCCTC-GAAGGG
* *
26186264 TAAGATGA-TCGAAATACTCC-CGAAGGA
1 TAAAATGACT-GAAATAC-CCTCGAAGGG
26186291 TAAAATG
1 TAAAATG
26186298 GCTATTATAC
Statistics
Matches: 193, Mismatches: 21, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
26 23 0.12
27 166 0.86
28 4 0.02
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.19
Consensus pattern (27 bp):
TAAAATGACTGAAATACCCTCGAAGGG
Found at i:26186186 original size:81 final size:80
Alignment explanation
Indices: 26186049--26186297 Score: 324
Period size: 81 Copynumber: 3.1 Consensus size: 80
26186039 GTAATGGGCC
* *
26186049 TAAAATGACAGAAATACCCTCGAAGGGTAAAATGACAGAAATACCCTCGAAGGGTAAAATGATCG
1 TAAAATGACAGAAATACCCTTGAAGGGTAAAATGACAGAAATACCCTCGAAAGGTAAAATGATCG
26186114 AAATACACTCGAAGGG
66 AAATAC-CTCGAAGGG
* * *
26186130 TAAAATGACTGAAATACCCTTGAAGGGTAAAATGACTGAAATACCCTCAAAAGGTAAAATGAT-G
1 TAAAATGACAGAAATACCCTTGAAGGGTAAAATGACAGAAATACCCTCGAAAGGTAAAATGATCG
26186194 AAAATACCTTC-AAGGG
66 -AAATACC-TCGAAGGG
* * * * *
26186210 TAAAATGACCGAAATACCTTTGAAGGGTAAAATAACCGAAATACCC-CTGAAAGGTAAGATGATC
1 TAAAATGACAGAAATACCCTTGAAGGGTAAAATGACAGAAATACCCTC-GAAAGGTAAAATGATC
* *
26186274 GAAATACTCCCGAAGGA
65 GAAATAC-CTCGAAGGG
26186291 TAAAATG
1 TAAAATG
26186298 GCTATTATAC
Statistics
Matches: 149, Mismatches: 13, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
79 1 0.01
80 69 0.46
81 79 0.53
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.19
Consensus pattern (80 bp):
TAAAATGACAGAAATACCCTTGAAGGGTAAAATGACAGAAATACCCTCGAAAGGTAAAATGATCG
AAATACCTCGAAGGG
Found at i:26186308 original size:107 final size:108
Alignment explanation
Indices: 26186049--26186280 Score: 301
Period size: 107 Copynumber: 2.2 Consensus size: 108
26186039 GTAATGGGCC
* * * * *
26186049 TAAAATGACAGAAATACCCTCGAAGGGTAAAATGA-CAGAAATACCCTCGAAGGGTAAAATGATC
1 TAAAATGACTGAAATACCCTCAAAAGGTAAAATGATGA-AAATACCCTCGAAGGGTAAAATGACC
* * * *
26186113 GAAATACACTCGAAGGGTAAAATGACTGAAATACCCTTGAAGGG
65 GAAATACACTCGAAGGGTAAAATAACCGAAATACCCCTGAAAGG
*
26186157 TAAAATGACTGAAATACCCTCAAAAGGTAAAATGATGAAAATACCTTC-AAGGGTAAAATGACCG
1 TAAAATGACTGAAATACCCTCAAAAGGTAAAATGATGAAAATACCCTCGAAGGGTAAAATGACCG
*
26186221 AAATAC-CTTTGAAGGGTAAAATAACCGAAATACCCCTGAAAGG
66 AAATACAC-TCGAAGGGTAAAATAACCGAAATACCCCTGAAAGG
*
26186264 TAAGATGA-TCGAAATAC
1 TAAAATGACT-GAAATAC
26186281 TCCCGAAGGA
Statistics
Matches: 109, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
106 2 0.02
107 65 0.60
108 41 0.38
109 1 0.01
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.19
Consensus pattern (108 bp):
TAAAATGACTGAAATACCCTCAAAAGGTAAAATGATGAAAATACCCTCGAAGGGTAAAATGACCG
AAATACACTCGAAGGGTAAAATAACCGAAATACCCCTGAAAGG
Found at i:26186676 original size:28 final size:28
Alignment explanation
Indices: 26186645--26186709 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
26186635 TTTCTGTATT
*
26186645 GGGCT-AGTGCCCACACTGTTACTACTTA
1 GGGCTCAG-GCCCACACTATTACTACTTA
*
26186673 GGGCTCAGGCCCAGACTATTACTACTTA
1 GGGCTCAGGCCCACACTATTACTACTTA
*
26186701 AGGCTCAGG
1 GGGCTCAGG
26186710 TCCAGATTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 31 0.94
29 2 0.06
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (28 bp):
GGGCTCAGGCCCACACTATTACTACTTA
Found at i:26186722 original size:28 final size:28
Alignment explanation
Indices: 26186653--26186723 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
26186643 TTGGGCTAGT
* *
26186653 GCCCACACTGTTACTACTTAGGGCTCAG
1 GCCCAGACTGTTACTACTTAAGGCTCAG
*
26186681 GCCCAGACTATTACTACTTAAGGCTCAG
1 GCCCAGACTGTTACTACTTAAGGCTCAG
* *
26186709 GTCCAGATTGTTACT
1 GCCCAGACTGTTACT
26186724 GTATGTCGTA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (28 bp):
GCCCAGACTGTTACTACTTAAGGCTCAG
Found at i:26188291 original size:20 final size:19
Alignment explanation
Indices: 26188267--26188312 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
26188257 AGTTTCGGTA
*
26188267 AAATTATTGTAAAA-AATAT
1 AAATTATTATAAAATAAT-T
26188286 ATAATTATTATAAAATAATT
1 A-AATTATTATAAAATAATT
26188306 AAATTAT
1 AAATTAT
26188313 ACTTAAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 7 0.29
20 14 0.58
21 3 0.12
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (19 bp):
AAATTATTATAAAATAATT
Found at i:26188360 original size:22 final size:23
Alignment explanation
Indices: 26188335--26188377 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
26188325 AAAAATTTTA
26188335 ATTTTAATTAATTTT-ATAATAT
1 ATTTTAATTAATTTTGATAATAT
*
26188357 ATTTTTATTAATTTTGATAAT
1 ATTTTAATTAATTTTGATAAT
26188378 TTTCGACAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (23 bp):
ATTTTAATTAATTTTGATAATAT
Found at i:26198153 original size:22 final size:24
Alignment explanation
Indices: 26198128--26198171 Score: 56
Period size: 22 Copynumber: 1.9 Consensus size: 24
26198118 CATGTATAGG
*
26198128 TGAACTTATAAT-GATG-TTTACT
1 TGAAATTATAATAGATGATTTACT
*
26198150 TGAAATTTTAATAGATGATTTA
1 TGAAATTATAATAGATGATTTA
26198172 GTATGTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 10 0.56
23 4 0.22
24 4 0.22
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (24 bp):
TGAAATTATAATAGATGATTTACT
Found at i:26198709 original size:23 final size:23
Alignment explanation
Indices: 26198683--26198728 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
26198673 GTGTTACACG
* *
26198683 GCCTGGCACACGGGCGTGTGACA
1 GCCTAGCAAACGGGCGTGTGACA
**
26198706 GCCTAGCAAACGTTCGTGTGACA
1 GCCTAGCAAACGGGCGTGTGACA
26198729 CGGTCGTGTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.22, C:0.28, G:0.33, T:0.17
Consensus pattern (23 bp):
GCCTAGCAAACGGGCGTGTGACA
Found at i:26200142 original size:17 final size:17
Alignment explanation
Indices: 26200120--26200158 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
26200110 AAAAATCACC
*
26200120 TAAAAATATTAAAATTA
1 TAAAAAAATTAAAATTA
26200137 TAAAAAAATTAAAATTA
1 TAAAAAAATTAAAATTA
26200154 -AAAAA
1 TAAAAA
26200159 CCCAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (17 bp):
TAAAAAAATTAAAATTA
Found at i:26201570 original size:25 final size:26
Alignment explanation
Indices: 26201528--26201579 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
26201518 CACCATTGTT
*
26201528 ATTGTTTTTATTTTATTTTATTT-TTA
1 ATTGTTTTTATTTGATTTT-TTTATTA
*
26201554 ATTG-TTTTCTTTGATTTTTTTATTA
1 ATTGTTTTTATTTGATTTTTTTATTA
26201579 A
1 A
26201580 GAGTAGTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 3 0.13
25 16 0.70
26 4 0.17
ACGTcount: A:0.19, C:0.02, G:0.06, T:0.73
Consensus pattern (26 bp):
ATTGTTTTTATTTGATTTTTTTATTA
Found at i:26205644 original size:25 final size:25
Alignment explanation
Indices: 26205607--26205659 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
26205597 TAATGTATCA
*
26205607 TTTTTTATGGGGAGTAATAACTTAT
1 TTTTTTATAGGGAGTAATAACTTAT
*
26205632 TTTTTTATAGGGAGTAATAATTTAT
1 TTTTTTATAGGGAGTAATAACTTAT
26205657 TTT
1 TTT
26205660 GCCCTCCACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.28, C:0.02, G:0.17, T:0.53
Consensus pattern (25 bp):
TTTTTTATAGGGAGTAATAACTTAT
Found at i:26206835 original size:44 final size:44
Alignment explanation
Indices: 26206781--26206879 Score: 189
Period size: 44 Copynumber: 2.2 Consensus size: 44
26206771 CTAGTATTGC
26206781 CTCCTGACCTCTACTAATTACTTAATTGGCGGATACTCACTTAT
1 CTCCTGACCTCTACTAATTACTTAATTGGCGGATACTCACTTAT
*
26206825 CTCCTAACCTCTACTAATTACTTAATTGGCGGATACTCACTTAT
1 CTCCTGACCTCTACTAATTACTTAATTGGCGGATACTCACTTAT
26206869 CTCCTGACCTC
1 CTCCTGACCTC
26206880 ACTTTCTCCA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 53 1.00
ACGTcount: A:0.24, C:0.30, G:0.10, T:0.35
Consensus pattern (44 bp):
CTCCTGACCTCTACTAATTACTTAATTGGCGGATACTCACTTAT
Found at i:26210875 original size:6 final size:6
Alignment explanation
Indices: 26210866--26210892 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
26210856 AACATTAATT
26210866 AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAA
26210893 AACCAAATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:26210890 original size:22 final size:21
Alignment explanation
Indices: 26210848--26210894 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
26210838 AGAAAATCAC
* *
26210848 AAAAATAAAACATTAATTAAA
1 AAAAATAAAACATAAAATAAA
26210869 TAAAAATAAAA-ATAAAAATAAA
1 -AAAAATAAAACAT-AAAATAAA
26210891 AAAA
1 AAAA
26210895 CCAAATTGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (21 bp):
AAAAATAAAACATAAAATAAA
Found at i:26216451 original size:24 final size:24
Alignment explanation
Indices: 26216424--26216470 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
26216414 AAAGTCAAAT
* *
26216424 ATATTATGCTAATAAATGCTAAAC
1 ATATTATACTAATAAATACTAAAC
*
26216448 ATATTATACTCATAAATACTAAA
1 ATATTATACTAATAAATACTAAA
26216471 TCTTCTAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.34
Consensus pattern (24 bp):
ATATTATACTAATAAATACTAAAC
Found at i:26220899 original size:24 final size:24
Alignment explanation
Indices: 26220849--26220900 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
26220839 AATCAAATTC
* *
26220849 AAATATATTATGCTAATAAATGCT
1 AAATATATTATCCTAATAAATACT
* *
26220873 AAATATATTATCCTCATAAATATT
1 AAATATATTATCCTAATAAATACT
26220897 AAAT
1 AAAT
26220901 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.48, C:0.10, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATCCTAATAAATACT
Found at i:26221245 original size:7 final size:7
Alignment explanation
Indices: 26221233--26221264 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
26221223 GAAATGCTAC
26221233 AACATCG
1 AACATCG
26221240 AACATCG
1 AACATCG
26221247 AACATCG
1 AACATCG
26221254 AACATCG
1 AACATCG
26221261 AACA
1 AACA
26221265 GGTGAGGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.47, C:0.28, G:0.12, T:0.12
Consensus pattern (7 bp):
AACATCG
Found at i:26225028 original size:4 final size:4
Alignment explanation
Indices: 26225019--26225062 Score: 54
Period size: 4 Copynumber: 11.2 Consensus size: 4
26225009 TTAAAAAACA
* * *
26225019 ATTT ATTT ATTT ATAT ATAT ATGT ATTT ATTT ATTT A-TT ATTT A
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A
26225063 GTTTTTTAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
3 3 0.08
4 33 0.92
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (4 bp):
ATTT
Found at i:26225514 original size:15 final size:15
Alignment explanation
Indices: 26225491--26225523 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
26225481 TTTTTATGCC
26225491 ATTGATGTATTTATT
1 ATTGATGTATTTATT
*
26225506 ATTGTTGTATTTATT
1 ATTGATGTATTTATT
26225521 ATT
1 ATT
26225524 ATAGCATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (15 bp):
ATTGATGTATTTATT
Found at i:26237421 original size:89 final size:88
Alignment explanation
Indices: 26237313--26237866 Score: 296
Period size: 89 Copynumber: 6.4 Consensus size: 88
26237303 TCGCATCTAG
*
26237313 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAATTAAGTCTTATCCTCCTGAAGTTGCA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAATTAAGTCTTAT-CTCCTGAAGTTGCA
*
26237378 GTGAGGCAGACTGAAGATGGCAAA
65 GTGAGGCAGACTGAAGATCGCAAA
* ** ** *
26237402 TCTTATCTCTCTGAAGTTGCAATGGAGCAGGTTAAAGCCGA-TAATTC-TATCTTCCTGAAGTTG
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACT-AAG-AAATTAAGTCTTATC-TCCTGAAGTTG
* * * ** *
26237465 CAGTGGAGTG--GA-TTAAAACCTTAGA
63 CAGT-GAG-GCAGACTGAAGATCGCAAA
* * * *
26237490 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CG-CATCT-AGTCTTATCTCCCTGAAGTTAC
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAAT-TAAGTCTTATCT-CCTGAAGTTGC
* ** *
26237550 AGTG-GAGCAGACT-AAAAAAGCAAG
64 AGTGAG-GCAGACTGAAGATCGCAAA
* **** *
26237574 TCTTATC-CTCCTGAAGTTGCAGT-GAGGTAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
1 TCTTATCTCT-CTGAAGTTGCAGTGGA-GCAGACT-AAGAAATTAAGTCTTATCT-CCTGAAGTT
* ** *
26237637 GCAGTGGGGCAGGTTAAAG-TCG-ATAA
62 GCAGTGAGGCAGACTGAAGATCGCA-AA
* ** * * *
26237663 TCCTATCT-TCCTGAAGTTGCAGTGGAGTGGATTAA-AACCTT-GGATCTTATCTCCTTGAAGTT
1 TCTTATCTCT-CTGAAGTTGCAGTGGAGCAGACTAAGAA-ATTAAG-TCTTATCTCC-TGAAGTT
* * * *
26237725 GCAGAGA-GCAGA-TCG--CAT--CTAG
62 GCAGTGAGGCAGACT-GAAGATCGCAAA
* * * **
26237747 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAATTAAGTCTTAT-CTCCTGAAGTTGCA
26237812 GTGAGGCAGACTGAAGAT-GACAAA
65 GTGAGGCAGACTGAAGATCG-CAAA
* *
26237836 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGA
26237867 TTAAAACCAA
Statistics
Matches: 349, Mismatches: 75, Indels: 82
0.69 0.15 0.16
Matches are distributed among these distances:
82 3 0.01
83 7 0.02
84 95 0.27
85 17 0.05
86 5 0.01
87 15 0.04
88 52 0.15
89 137 0.39
90 16 0.05
91 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (88 bp):
TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGAAATTAAGTCTTATCTCCTGAAGTTGCAG
TGAGGCAGACTGAAGATCGCAAA
Found at i:26237613 original size:217 final size:217
Alignment explanation
Indices: 26237226--26237997 Score: 1186
Period size: 217 Copynumber: 3.5 Consensus size: 217
26237216 CAGTAGCTAG
* * *
26237226 TAATCCTATCTCCCTGAAGTTGTAGTGGGGTAGATTAAAACCTTGGATCTTATCTCTCTGAAGTT
1 TAATCCTATCTTCCTGAAGTTGCAGTGGAGTAGATTAAAACCTTGGATCTTATCTCTCTGAAGTT
**
26237291 GCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAATTAA
66 GCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAAGCAA
*
26237356 GTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCTCTGAAGTTG
131 GTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTG
*
26237421 CAATGGAGCAGGTTAAAGCCGA
196 CAGTGGAGCAGGTTAAAGCCGA
* * *
26237443 TAATTCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTT
1 TAATCCTATCTTCCTGAAGTTGCAGTGGAGTAGATTAAAACCTTGGATCTTATCTCTCTGAAGTT
* *
26237508 GCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAAAAAGCAA
66 GCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAAGCAA
*
26237573 GTCTTATCCTCCTGAAGTTGCAGTGAGGTAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTG
131 GTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTG
* *
26237638 CAGTGGGGCAGGTTAAAGTCGA
196 CAGTGGAGCAGGTTAAAGCCGA
*
26237660 TAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTC-CTTGAAGT
1 TAATCCTATCTTCCTGAAGTTGCAGTGGAGTAGATTAAAACCTTGGATCTTATCTCTC-TGAAGT
* *
26237724 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAGTAAGCA
65 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAAGCA
*
26237789 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAAGTT
130 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
* * * *
26237854 GTAGTGGAGCAGATTAAAACCAA
195 GCAGTGGAGCAGGTTAAAGCCGA
* * * *
26237877 TAATCCTATCTTCTTGAAGTTGCAATGGAGCAAATTAGAACCACAAATCTTGGATCTTATCTCTC
1 TAATCCTATCTTCCTGAAGTTGCAGTGGAGTAGATTA-AA--AC----CTTGGATCTTATCTCTC
** * *
26237942 TGAAGTCACAGAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGAGGAG
59 TGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAG
26237998 TAGATTGAAG
Statistics
Matches: 508, Mismatches: 38, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
216 1 0.00
217 435 0.86
218 2 0.00
220 2 0.00
224 67 0.13
225 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (217 bp):
TAATCCTATCTTCCTGAAGTTGCAGTGGAGTAGATTAAAACCTTGGATCTTATCTCTCTGAAGTT
GCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAAGCAA
GTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTG
CAGTGGAGCAGGTTAAAGCCGA
Found at i:26237751 original size:173 final size:173
Alignment explanation
Indices: 26237572--26237900 Score: 384
Period size: 173 Copynumber: 1.9 Consensus size: 173
26237562 TAAAAAAGCA
* * *
26237572 AGTCTTATC-CTCCTGAAGTTGCAGT-GAGGTAGACTGAAG-ATGGCAAATCTTAT-CTCCCTGA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAAACT-AAGTA-AGCAAATCTTATCCT-CCTGA
* ** * * **
26237633 AGTTGCAGTGGGGCAGGTTAAAG-TCGA-TAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATT
61 AGTTGCAGTGAGGCAGACTAAAGAT-GACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATT
* * *
26237696 AAAACC-TTGGATCTTATCTCCTTGAAGTTGCAGAGAGCAGATCGCATCT
125 AAAACCAAT-AATCCTATCTCCTTGAAGTTGCAGAGAGCAGATCGCATCT
*
26237745 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAGTAAGCAAATCTTATCCTCCTGAAGTTG
* * *
26237810 CAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACC
66 CAGTGAGGCAGACTAAAGATGACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
*
26237875 AATAATCCTATCTTCTTGAAGTTGCA
131 AATAATCCTATCTCCTTGAAGTTGCA
26237901 ATGGAGCAAA
Statistics
Matches: 131, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
172 39 0.30
173 88 0.67
174 4 0.03
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (173 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAGTAAGCAAATCTTATCCTCCTGAAGTTG
CAGTGAGGCAGACTAAAGATGACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
AATAATCCTATCTCCTTGAAGTTGCAGAGAGCAGATCGCATCT
Found at i:26237866 original size:45 final size:44
Alignment explanation
Indices: 26237313--26237866 Score: 262
Period size: 44 Copynumber: 12.7 Consensus size: 44
26237303 TCGCATCTAG
* ** *
26237313 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAATTAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
*
26237357 TCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAG-ATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGCAAA
* * * *
26237402 TCTTATCTCTCTGAAGTTGCAATGGAGCAG-GTTA--AAGCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG-C-A-AA
* ** * * *
26237446 T-TCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAA--AACCTTAGA
1 TCT-TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC--AAA
* * * * * * *
26237490 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CG-CATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
* ** *
26237530 TCTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAAAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
* *
26237574 TCTTATC-CTCCTGAAGTTGCAGT-GAGGTAGACTGAAG-ATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGCAAA
* ** *
26237619 TCTTATCTCCCTGAAGTTGCAGTGGGGCAGGTTAAAGT-CG-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGCA-AA
* * ** * * **
26237663 TCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAA--AACCTTGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC--AAA
* * * * * * *
26237707 TCTTATCTCCTTGAAGTTGCAG-AGAGCAGA-T-CG-CATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
* *
26237747 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
*
26237791 TCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAG-ATGACAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTAAG-CAAA
*
26237836 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
26237867 TTAAAACCAA
Statistics
Matches: 387, Mismatches: 82, Indels: 81
0.70 0.15 0.15
Matches are distributed among these distances:
40 41 0.11
41 14 0.04
42 10 0.03
43 26 0.07
44 189 0.49
45 99 0.26
46 8 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
Found at i:26238403 original size:5 final size:5
Alignment explanation
Indices: 26238395--26238421 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
26238385 AAAGGAAAGA
26238395 AAATC AAATC AAATC AAATC AAATC AA
1 AAATC AAATC AAATC AAATC AAATC AA
26238422 GCAGATTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.63, C:0.19, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATC
Found at i:26239575 original size:4 final size:4
Alignment explanation
Indices: 26239568--26239606 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
26239558 AAACCAAATT
* *
26239568 TTTA TTTA TTTA TTTA TATA TGTA TTTA TTTA -TTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
26239607 GTTTTTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
3 3 0.10
4 28 0.90
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:26239934 original size:13 final size:12
Alignment explanation
Indices: 26239910--26239948 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
26239900 ATATGGATTA
26239910 TTGTTT-TTTAT
1 TTGTTTATTTAT
26239921 TTCGTTTATTTAT
1 TT-GTTTATTTAT
26239934 TTGTTTATATTAT
1 TTGTTTAT-TTAT
26239947 TT
1 TT
26239949 TTATGTCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.08
12 10 0.40
13 13 0.52
ACGTcount: A:0.15, C:0.03, G:0.08, T:0.74
Consensus pattern (12 bp):
TTGTTTATTTAT
Found at i:26239979 original size:15 final size:15
Alignment explanation
Indices: 26239956--26239997 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
26239946 TTTTTATGTC
26239956 ATTGATGTATTTATT
1 ATTGATGTATTTATT
*
26239971 ATTGTTGTATTTATT
1 ATTGATGTATTTATT
26239986 ATT-ATAGTATTT
1 ATTGAT-GTATTT
26239998 GTACGTATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 1 0.04
15 23 0.96
ACGTcount: A:0.26, C:0.00, G:0.12, T:0.62
Consensus pattern (15 bp):
ATTGATGTATTTATT
Found at i:26250582 original size:84 final size:84
Alignment explanation
Indices: 26250459--26250621 Score: 229
Period size: 84 Copynumber: 1.9 Consensus size: 84
26250449 TGAGTGAAAA
* * * * * *
26250459 TTCCACATAAGACAGTCATTGGTGGACATTCCATCTAAGATATTCATTGGTGGATTTTCCACATA
1 TTCCACATAAGACAGTCATTGGCGGACATTCCATCTAAGATAGTCATTGGCGAACTTTCCACAAA
26250524 AGATAGTCCTTGGAGGAAT
66 AGATAGTCCTTGGAGGAAT
* * *
26250543 TTCCACATAAGATAGTCTTTGGCGGACTTTCCA-CATAAGATAGTCATTGGCGAACTTTCCACAA
1 TTCCACATAAGACAGTCATTGGCGGACATTCCATC-TAAGATAGTCATTGGCGAACTTTCCACAA
26250607 AAGATAGTCCTTGGA
65 AAGATAGTCCTTGGA
26250622 AGACTTCCAT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
83 1 0.01
84 68 0.99
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.31
Consensus pattern (84 bp):
TTCCACATAAGACAGTCATTGGCGGACATTCCATCTAAGATAGTCATTGGCGAACTTTCCACAAA
AGATAGTCCTTGGAGGAAT
Found at i:26250627 original size:28 final size:28
Alignment explanation
Indices: 26250459--26250627 Score: 178
Period size: 28 Copynumber: 6.0 Consensus size: 28
26250449 TGAGTGAAAA
* * * *
26250459 TTCCACATAAGACAGTCATTGGTGGACA
1 TTCCACATAAGATAGTCCTTGGAGGACT
* * * *
26250487 TTCCATC-TAAGATATTCATTGGTGGATT
1 TTCCA-CATAAGATAGTCCTTGGAGGACT
*
26250515 TTCCACATAAGATAGTCCTTGGAGGAAT
1 TTCCACATAAGATAGTCCTTGGAGGACT
* *
26250543 TTCCACATAAGATAGTCTTTGGCGGACT
1 TTCCACATAAGATAGTCCTTGGAGGACT
* * *
26250571 TTCCACATAAGATAGTCATTGGCGAACT
1 TTCCACATAAGATAGTCCTTGGAGGACT
* *
26250599 TTCCACAAAAGATAGTCCTTGGAAGACT
1 TTCCACATAAGATAGTCCTTGGAGGACT
26250627 T
1 T
26250628 CCATTTTCTA
Statistics
Matches: 121, Mismatches: 18, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
27 1 0.01
28 119 0.98
29 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.31
Consensus pattern (28 bp):
TTCCACATAAGATAGTCCTTGGAGGACT
Found at i:26253508 original size:23 final size:23
Alignment explanation
Indices: 26253458--26253502 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
26253448 GTAATGATTA
* *
26253458 GATTAAAATGGAATTTTTAATAT
1 GATTAAAATGAAATTTTAAATAT
*
26253481 GATTAAAATTAAATTTTAAATA
1 GATTAAAATGAAATTTTAAATA
26253503 GAATTATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (23 bp):
GATTAAAATGAAATTTTAAATAT
Found at i:26253667 original size:13 final size:13
Alignment explanation
Indices: 26253651--26253675 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26253641 ATTTGAGTTT
26253651 ATAATTCATATTA
1 ATAATTCATATTA
26253664 ATAATTCATATT
1 ATAATTCATATT
26253676 CGGGTTTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (13 bp):
ATAATTCATATTA
Found at i:26253800 original size:149 final size:152
Alignment explanation
Indices: 26253631--26253932 Score: 556
Period size: 149 Copynumber: 2.0 Consensus size: 152
26253621 ATAATTCTAG
26253631 TTTTTTTTTAATTTGAGTTTATAATTCATATTAATAATTCATATTCGGGTTTGTTTGGTTTAAAA
1 TTTTTTTTTAATTTGAGTTTATAATTCATATTAATAATTCATATTCGGGTTTGTTTGGTTTAAAA
26253696 AACAAATATCATTTTTATTTTCATTTTCTTGAAAAATGAAAAACACTAAGC-A-A-GTTGGTTAA
66 AACAAATATCATTTTTATTTTCATTTTCTTGAAAAATGAAAAACACTAAGCAATATGTTGGTTAA
26253758 AAATTATAAAATGATTTTGAAT
131 AAATTATAAAATGATTTTGAAT
*
26253780 TTTTTTTTTAATTTGAGTTTATATTTCATATTAATAATTCATATTCGGGTTTGTTTGGTTTAAAA
1 TTTTTTTTTAATTTGAGTTTATAATTCATATTAATAATTCATATTCGGGTTTGTTTGGTTTAAAA
26253845 AACAAATATCATTTTTATTTTCATTTTCTTGAAAAATGAAAAACACTAAGCAAAATATGTTGGTT
66 AACAAATATCATTTTTATTTTCATTTTCTTGAAAAATGAAAAACACTAAGC--AATATGTTGGTT
26253910 AAAAATTATAAAATGATTTTGAA
129 AAAAATTATAAAATGATTTTGAA
26253933 AAATGAAAAT
Statistics
Matches: 147, Mismatches: 1, Indels: 5
0.96 0.01 0.03
Matches are distributed among these distances:
149 115 0.78
152 1 0.01
153 1 0.01
154 30 0.20
ACGTcount: A:0.37, C:0.07, G:0.11, T:0.46
Consensus pattern (152 bp):
TTTTTTTTTAATTTGAGTTTATAATTCATATTAATAATTCATATTCGGGTTTGTTTGGTTTAAAA
AACAAATATCATTTTTATTTTCATTTTCTTGAAAAATGAAAAACACTAAGCAATATGTTGGTTAA
AAATTATAAAATGATTTTGAAT
Found at i:26253998 original size:51 final size:51
Alignment explanation
Indices: 26253938--26254040 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
26253928 TTGAAAAATG
*
26253938 AAAATATTTAAAATTTAAAAATATAAAATAAAAGTTGTTTTCATTGTTTTC
1 AAAACATTTAAAATTTAAAAATATAAAATAAAAGTTGTTTTCATTGTTTTC
26253989 AAAACATTTAAAATTTAAAAATATAAAATAAAAGTTGTTTTCATTGTTTTC
1 AAAACATTTAAAATTTAAAAATATAAAATAAAAGTTGTTTTCATTGTTTTC
26254040 A
1 A
26254041 CTAAAAATGT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.48, C:0.05, G:0.06, T:0.42
Consensus pattern (51 bp):
AAAACATTTAAAATTTAAAAATATAAAATAAAAGTTGTTTTCATTGTTTTC
Found at i:26267987 original size:28 final size:29
Alignment explanation
Indices: 26267924--26267990 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
26267914 TTTAATTCAT
*
26267924 AAATTGGTACTTAAATTATATTTTTTCTC
1 AAATTGGTACTAAAATTATATTTTTTCTC
** *
26267953 ATCTTGGTACTAAAACTT-TTTTTTTTC-C
1 AAATTGGTACTAAAA-TTATATTTTTTCTC
26267981 AAATTGGTAC
1 AAATTGGTAC
26267991 CTCCATTAGT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
28 9 0.29
29 20 0.65
30 2 0.06
ACGTcount: A:0.28, C:0.13, G:0.09, T:0.49
Consensus pattern (29 bp):
AAATTGGTACTAAAATTATATTTTTTCTC
Found at i:26268150 original size:12 final size:12
Alignment explanation
Indices: 26268133--26268162 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26268123 ATTGGTAGTT
*
26268133 TTGTTAGTTCAA
1 TTGTTAGTTAAA
26268145 TTGTTAGTTAAA
1 TTGTTAGTTAAA
26268157 TTGTTA
1 TTGTTA
26268163 AGTATATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.03, G:0.17, T:0.53
Consensus pattern (12 bp):
TTGTTAGTTAAA
Found at i:26272064 original size:19 final size:17
Alignment explanation
Indices: 26272040--26272102 Score: 58
Period size: 16 Copynumber: 3.6 Consensus size: 17
26272030 TTTTTATTTA
*
26272040 TATATATATATGTTGTTTT
1 TATATACATAT-TT-TTTT
26272059 TATATACATATTTTTTT
1 TATATACATATTTTTTT
*
26272076 TATA-A-GTAATTTTTTT
1 TATATACAT-ATTTTTTT
*
26272092 TATATTCATAT
1 TATATACATAT
26272103 ATATACACGT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
15 1 0.03
16 13 0.35
17 10 0.27
18 3 0.08
19 10 0.27
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (17 bp):
TATATACATATTTTTTT
Found at i:26283638 original size:24 final size:26
Alignment explanation
Indices: 26283592--26283640 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
26283582 CGAGTTTGTT
26283592 TGTTCTTGTAAATACTTTATTCTTTGC
1 TGTTCTTG-AAATACTTTATTCTTTGC
26283619 TGTTCTTG-AATACTTT-TTCTTT
1 TGTTCTTGAAATACTTTATTCTTT
26283641 TCAAGACACT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 6 0.27
25 8 0.36
27 8 0.36
ACGTcount: A:0.16, C:0.14, G:0.10, T:0.59
Consensus pattern (26 bp):
TGTTCTTGAAATACTTTATTCTTTGC
Found at i:26283965 original size:22 final size:21
Alignment explanation
Indices: 26283935--26283977 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
26283925 TGTCTAAATA
26283935 TTGAATGAG-ATGGCAAGAAGTC
1 TTGAATGAGTA-GG-AAGAAGTC
*
26283957 TTGATTGAGTAGGAAGAAGTC
1 TTGAATGAGTAGGAAGAAGTC
26283978 CCCTATGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 8 0.42
22 10 0.53
23 1 0.05
ACGTcount: A:0.35, C:0.07, G:0.33, T:0.26
Consensus pattern (21 bp):
TTGAATGAGTAGGAAGAAGTC
Found at i:26284510 original size:44 final size:43
Alignment explanation
Indices: 26284455--26285129 Score: 327
Period size: 44 Copynumber: 15.6 Consensus size: 43
26284445 CCGATAATCC
* * *
26284455 TATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAACCTTGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATC-TAGATCT
* * * ***
26284499 TATCTCTCTGAAGATGCAG-AGAGCAGA-TCGCATCTAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCTAGATCT
* * * *
26284539 TATCT-CCTTAGAGTTGTAGTGGAGCAGACTAAGTAAGCTAG-TCT
1 TATCTCCCTGA-AGTTGCAGTGGAGCAGATTAA--AATCTAGATCT
* * * * *
26284583 TATC-CTCCTGAAGCTGCAGT-GAGGTAGACTGAAGATGGC-AAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAAAAT--CTAGATCT
* * *
26284628 TATCTCCCTGAAGTTGAAGTGGAGCAGATT-AAAGCTGATAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCT-A-GATCT
* * * *
26284672 TATCTCCCTGAAGTTGCAATGGAGCGGATTAAAACCTTGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATC-TAGATCT
* * * ***
26284716 TATCTCTCTGAAGATGCAG-AGAGCAGA-TCGCATCTAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCTAGATCT
* * * *
26284756 TATCTCCCTGGAGTTGCAGTGGAGCAGACTAAGTAAGCAAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AATCTAGATCT
* * * * *
26284800 TATC-CTTCTGAAGTTGTAGT-GAGGCAGACTGAAGATGAC-AAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAAAAT--CTAGATCT
* ** *
26284845 TATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCCGATA-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATC--TAGATCT
* * *
26284889 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATCTTGGATAT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATC-TAGATCT
* * * ***
26284933 TATCTCTCTGAATTTGCAG-AGAGCAGA-TCGCATCTAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCTAGATCT
* * *
26284973 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACAAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AATCTAGATCT
* ** * * *
26285017 TATC-CTCCTGAAGTTACAGT-GAGGCAGACTGGAGATGGTAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAAAAT-CTAGATCT
* * *
26285062 TATCTCCCTAAAGTTGCAGTGGAGCAGATT-AAAGCTGATAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCT-A-GATCT
26285106 TATCTCCCTGAAGTTGCAGTGGAG
1 TATCTCCCTGAAGTTGCAGTGGAG
26285130 TAGACCCAAG
Statistics
Matches: 468, Mismatches: 115, Indels: 96
0.69 0.17 0.14
Matches are distributed among these distances:
39 3 0.01
40 52 0.11
41 28 0.06
42 15 0.03
43 37 0.08
44 237 0.51
45 86 0.18
46 10 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCTAGATCT
Found at i:26284823 original size:217 final size:217
Alignment explanation
Indices: 26284447--26285129 Score: 1114
Period size: 217 Copynumber: 3.1 Consensus size: 217
26284437 ATCGGTGGCC
*
26284447 GATAATCCTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAG
1 GATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAG
* * *
26284512 ATGCAGAGAGCAGATCGCATCTAGTCTTATCTCCTTAGAGTTGTAGTGGAGCAGACTAAGTAAGC
66 ATGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGGAGTTGCAGTGGAGCAGACTAAGTAAGC
* * *
26284577 TAGTCTTATCCTCCTGAAGCTGCAGTGAGGTAGACTGAAGATGGCAAATCTTATCTCCCTGAAGT
131 AAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGT
*
26284642 TGAAGTGGAGCAGATTAAAGCT
196 TGCAGTGGAGCAGATTAAAGCT
* * *
26284664 GATAATCTTATCTCCCTGAAGTTGCAATGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAG
1 GATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAG
26284729 ATGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGGAGTTGCAGTGGAGCAGACTAAGTAAGC
66 ATGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGGAGTTGCAGTGGAGCAGACTAAGTAAGC
* * * *
26284794 AAGTCTTATCCTTCTGAAGTTGTAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAGGT
131 AAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGT
*
26284859 TGCAGTGGAGCAGATTAAAGCC
196 TGCAGTGGAGCAGATTAAAGCT
* * * *
26284881 GATAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATCTTGGATATTATCTCTCTGAAT
1 GATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAG
* * *
26284946 TTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAAC
66 ATGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGGAGTTGCAGTGGAGCAGACTAAGTAAGC
* * * *
26285011 AAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGGAGATGGTAAATCTTATCTCCCTAAAGT
131 AAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGT
26285076 TGCAGTGGAGCAGATTAAAGCT
196 TGCAGTGGAGCAGATTAAAGCT
*
26285098 GATAATCTTATCTCCCTGAAGTTGCAGTGGAG
1 GATAATCCTATCTCCCTGAAGTTGCAGTGGAG
26285130 TAGACCCAAG
Statistics
Matches: 429, Mismatches: 37, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
217 429 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28
Consensus pattern (217 bp):
GATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAG
ATGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGGAGTTGCAGTGGAGCAGACTAAGTAAGC
AAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGT
TGCAGTGGAGCAGATTAAAGCT
Found at i:26285020 original size:84 final size:89
Alignment explanation
Indices: 26284884--26285094 Score: 195
Period size: 84 Copynumber: 2.4 Consensus size: 89
26284874 TAAAGCCGAT
* * * * ** *
26284884 AATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATCTTGGATATTAT-CTCTCTGAATTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAACTAAGATATTATCCTC-CTGAAGTT
*
26284948 GCAGAGA-GCAGA-TCG-CAT-CT-
65 ACAGAGAGGCAGACTCGACATGCTA
* *
26284968 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAAC-AAG-TCTTATCCTCCTGAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AAACTAAGATATTATCCTCCTGAAGT
* * * *
26285031 TACAGTGAGGCAGACTGGAGATGGTA
64 TACAGAGAGGCAGACTCGACATGCTA
* *
26285057 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAA
26285095 GCTGATAATC
Statistics
Matches: 102, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
84 50 0.49
85 9 0.09
86 5 0.05
87 3 0.03
88 1 0.01
89 34 0.33
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (89 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAACTAAGATATTATCCTCCTGAAGTTA
CAGAGAGGCAGACTCGACATGCTA
Found at i:26286681 original size:17 final size:16
Alignment explanation
Indices: 26286672--26286717 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
26286662 ATATATGTTG
26286672 TTTTTATATACATATT
1 TTTTTATATACATATT
*
26286688 TTTTTATA-A-GTAATT
1 TTTTTATATACAT-ATT
*
26286703 TTTTTATATTCATAT
1 TTTTTATATACATAT
26286718 ATATACACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 6
0.73 0.09 0.18
Matches are distributed among these distances:
14 1 0.04
15 12 0.50
16 10 0.42
17 1 0.04
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.63
Consensus pattern (16 bp):
TTTTTATATACATATT
Found at i:26290920 original size:129 final size:129
Alignment explanation
Indices: 26290771--26291076 Score: 479
Period size: 129 Copynumber: 2.4 Consensus size: 129
26290761 TTTTAGTCTA
*
26290771 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTTAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
* *
26290836 AGATATGTGGTTTTAATCCGCTCCACTGCAACTTCAGGTAGATAGGATTGATTTC-TTCTGTCCG
66 AGATATGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTTC-GTCCG
* * * *
26290900 CTCCACTGCAACTTCGGGGAGATAAGACTGGATGCGATCTGTTTTACTGTAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
* * * * *
26290965 AGATCTGTGATTTTAATCCGCTCCACTGTAACTTTAGGGAGATAGGATTGGTTTCTTTCGTCTG
66 AGATATGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTTCGTCCG
*
26291029 CTTCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACT
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACT
26291077 ACTGCTTAGA
Statistics
Matches: 160, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
129 157 0.98
130 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (129 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
AGATATGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTTCGTCCG
Found at i:26291008 original size:44 final size:43
Alignment explanation
Indices: 26290771--26291058 Score: 176
Period size: 44 Copynumber: 6.7 Consensus size: 43
26290761 TTTTAGTCTA
*** *
26290771 CTCCACTGCAACTTCAGGGAGATAAGACTG-GA-TGCGATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTGTGATTTTAATCCG
* * * * *
26290812 CTCTACTGCAACTTTAGAGAGATAAGATATGTGGTTTTAATCCG
1 CTCCACTGCAACTTCAGGGAGATAAGA-CTGTGATTTTAATCCG
* * **
26290856 CTCCACTGCAACTTCAGGTAGATAGGA-T-TGATTTCTTCTGTCCG
1 CTCCACTGCAACTTCAGGGAGATAAGACTGTGA-TT-TT-AATCCG
* *** *
26290900 CTCCACTGCAACTTCGGGGAGATAAGACTG-GA-TGCGATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTGTGATTTTAATCCG
* ** * *
26290941 TTTTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCG
1 CTCCACTGCAACTTCAGGGAGATAAGA-CTGTGATTTTAATCCG
* * * * * ** *
26290985 CTCCACTGTAACTTTAGGGAGATAGGATTG-GTTTCTTTCGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTGTG-AT-TTTAATCCG
*
26291029 CTTCACTGCAACTTCAGGGAGATAAGACTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTG
26291059 GATGCGATCT
Statistics
Matches: 183, Mismatches: 51, Indels: 23
0.71 0.20 0.09
Matches are distributed among these distances:
41 50 0.27
42 9 0.05
43 9 0.05
44 112 0.61
45 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.31
Consensus pattern (43 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTGTGATTTTAATCCG
Found at i:26291118 original size:129 final size:128
Alignment explanation
Indices: 26290774--26291275 Score: 405
Period size: 129 Copynumber: 3.9 Consensus size: 128
26290764 TAGTCTACTC
* *
26290774 CACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGA
1 CACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTACTAC-TTAGAGAGATAAGA
* **** * * * * * * *
26290839 TATGTGGTTTTAATCCGCTCCACTGCAACTTCAGGTAGATAGGATTGATTTC-TTCTGTCCGCTC
65 TCTACAATTTCAATCCACTCCACTGTAACTTCAGGGAGATAGGATTGGTTTCTTTC-GTCTGCTT
* * * *
26290903 CACTGCAACTTCGGGGAGATAAGACTGGATGCGATCTGTTTTACT-GTAACTTCAGAGAGATAAG
1 CACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTACT-ACTT-AGAGAGATAAG
*** * * *
26290967 ATCTGTGATTTTAATCCGCTCCACTGTAACTTTAGGGAGATAGGATTGGTTTCTTTCGTCTGCTT
64 ATCTACAATTTCAATCCACTCCACTGTAACTTCAGGGAGATAGGATTGGTTTCTTTCGTCTGCTT
* *
26291032 CACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTACTGCTTAGAAAGATAAGAT
1 CACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTACTACTTAGAGAGATAAGAT
** * ** ***
26291097 CTACAATCTTCAA-CCTACTCCACTGTTGC-TCAGGGAGATAGGACTGGTGGCTTAAATCTGCTT
66 CTACAAT-TTCAATCC-ACTCCACTGTAACTTCAGGGAGATAGGATTGGTTTCTTTCGTCTGCTT
* * * * * * *
26291160 C-CTACTA-TCTC-GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGA
1 CACTGCAACT-TCAGGG-AGATAAGACT-G--G-ATGCGATCTGCTCTACTACTACTTAGAGAGA
*
26291222 TAAGATCTACAATCTTCAA-CCTACTCCAC--T-ACTGCTCAGGGAGATAGGACTGGT
60 TAAGATCTACAAT-TTCAATCC-ACTCCACTGTAACT--TCAGGGAGATAGGATTGGT
26291276 GGCTTAAATC
Statistics
Matches: 315, Mismatches: 43, Indels: 28
0.82 0.11 0.07
Matches are distributed among these distances:
126 4 0.01
127 15 0.05
128 50 0.16
129 168 0.53
130 5 0.02
131 73 0.23
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (128 bp):
CACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTACTACTTAGAGAGATAAGAT
CTACAATTTCAATCCACTCCACTGTAACTTCAGGGAGATAGGATTGGTTTCTTTCGTCTGCTT
Found at i:26291231 original size:131 final size:131
Alignment explanation
Indices: 26291063--26291403 Score: 558
Period size: 131 Copynumber: 2.6 Consensus size: 131
26291053 AGACTGGATG
* * ** **
26291063 CGATCTGCTCTACTACTGCTTAGAAAGATAAGATCTACAATCTTCAACCTACTCCACTGTTGCTC
1 CGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTC
*
26291128 AGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCTACTATCTCGGGAAGATAAGATTCGCCGTCT
66 AGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCTACTATCTCGGGAAGATAAGATTCACCGTCT
26291193 T
131 T
26291194 CGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTC
1 CGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTC
* *
26291259 AGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCTATTATCTCGGGAAGATAAGATTCACTGTCT
66 AGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCTACTATCTCGGGAAGATAAGATTCACCGTCT
26291324 T
131 T
** *
26291325 TAATCTGCTCCACTAC-AGTTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCT
1 CGATCTGCTCCACTACTA-CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCT
26291389 CAGGGAGATAGGACT
65 CAGGGAGATAGGACT
26291404 TGTTATGATG
Statistics
Matches: 197, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
130 1 0.01
131 196 0.99
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (131 bp):
CGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTC
AGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCTACTATCTCGGGAAGATAAGATTCACCGTCT
T
Found at i:26291238 original size:44 final size:44
Alignment explanation
Indices: 26291190--26291398 Score: 140
Period size: 44 Copynumber: 4.8 Consensus size: 44
26291180 AGATTCGCCG
*
26291190 TCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAA
1 TCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAA
* * * * * ****
26291234 TCTTCAACCTACTCCACTACTGCTCAGGGAGATAGGA-CTGGTG
1 TCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAA
* * * * * **
26291277 GCTTAAATCTGCTTC-CTATTA-TCTCGGGAAGATAAGAT-TCACTG
1 TCTTCAATCTGCTCCACTACTACT-TAGGG-AGATAAGATCT-ACAA
* *
26291321 TCTTTAATCTGCTCCACTAC-AGTTTAGGGAGATAAGATCTACAA
1 TCTTCAATCTGCTCCACTACTA-CTTAGGGAGATAAGATCTACAA
* * * *
26291365 TCTTCAACCTACTCCACTACTGCTCAGGGAGATA
1 TCTTCAATCTGCTCCACTACTACTTAGGGAGATA
26291399 GGACTTGTTA
Statistics
Matches: 121, Mismatches: 35, Indels: 18
0.70 0.20 0.10
Matches are distributed among these distances:
41 1 0.01
42 7 0.06
43 20 0.17
44 84 0.69
45 8 0.07
46 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (44 bp):
TCTTCAATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAA
Found at i:26292430 original size:15 final size:16
Alignment explanation
Indices: 26292410--26292446 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
26292400 GGTCAAAATC
26292410 AACGCTTC-TCTAGAA
1 AACGCTTCATCTAGAA
26292425 AACGC-TCATCTAGAA
1 AACGCTTCATCTAGAA
26292440 AACGCTT
1 AACGCTT
26292447 TCTTTACCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 2 0.10
15 17 0.85
16 1 0.05
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (16 bp):
AACGCTTCATCTAGAA
Found at i:26301534 original size:16 final size:16
Alignment explanation
Indices: 26301502--26301535 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26301492 TTTATAATGT
* *
26301502 AATGCCATGTAGTCAA
1 AATGCCATGCAGCCAA
26301518 AATGCCATGCAGCCAA
1 AATGCCATGCAGCCAA
26301534 AA
1 AA
26301536 CAAAACACCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.18
Consensus pattern (16 bp):
AATGCCATGCAGCCAA
Found at i:26302981 original size:3 final size:3
Alignment explanation
Indices: 26302973--26303008 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
26302963 TAAATGAGTA
26302973 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26303009 TTGAAAATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:26304971 original size:19 final size:19
Alignment explanation
Indices: 26304929--26304971 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
26304919 AAAATTACAA
* *
26304929 AAAAATTCAAAATAATTTT
1 AAAAATTAAAAATAATTAT
*
26304948 TAAAATTAAAAATAATTAT
1 AAAAATTAAAAATAATTAT
26304967 AAAAA
1 AAAAA
26304972 AATAAAAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAATTAAAAATAATTAT
Found at i:26305125 original size:3 final size:3
Alignment explanation
Indices: 26305117--26305169 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
26305107 CTCAAGAATC
26305117 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26305165 TTA TT
1 TTA TT
26305170 TTGCTTCGAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26309479 original size:11 final size:12
Alignment explanation
Indices: 26309429--26309482 Score: 69
Period size: 11 Copynumber: 4.8 Consensus size: 12
26309419 ACAAATCCTG
26309429 TCTCAAATTTCC
1 TCTCAAATTTCC
*
26309441 TTTC-AATTTCC
1 TCTCAAATTTCC
26309452 TCTC-AATTTCC
1 TCTCAAATTTCC
*
26309463 TTTCAAATTT-C
1 TCTCAAATTTCC
26309474 TCTCAAATT
1 TCTCAAATT
26309483 CATATTTAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
11 29 0.78
12 8 0.22
ACGTcount: A:0.24, C:0.28, G:0.00, T:0.48
Consensus pattern (12 bp):
TCTCAAATTTCC
Found at i:26309482 original size:23 final size:23
Alignment explanation
Indices: 26309429--26309482 Score: 85
Period size: 22 Copynumber: 2.4 Consensus size: 23
26309419 ACAAATCCTG
26309429 TCTCAAATTTCCTTTCAATTTCC
1 TCTCAAATTTCCTTTCAATTTCC
26309452 TCTC-AATTTCCTTTCAAATTT-C
1 TCTCAAATTTCCTTTC-AATTTCC
26309474 TCTCAAATT
1 TCTCAAATT
26309483 CATATTTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
22 16 0.55
23 13 0.45
ACGTcount: A:0.24, C:0.28, G:0.00, T:0.48
Consensus pattern (23 bp):
TCTCAAATTTCCTTTCAATTTCC
Found at i:26309820 original size:23 final size:23
Alignment explanation
Indices: 26309791--26309845 Score: 69
Period size: 22 Copynumber: 2.4 Consensus size: 23
26309781 AACAAATCCT
*
26309791 CTCTCAAATTTCC-TCTCAACTTC
1 CTCTCAAATTTCCTTC-CAAATTC
*
26309814 CTCTC-AATTTCCTTCCAAATTT
1 CTCTCAAATTTCCTTCCAAATTC
26309836 CTCTCAAATT
1 CTCTCAAATT
26309846 CATATTTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 17 0.61
23 11 0.39
ACGTcount: A:0.24, C:0.35, G:0.00, T:0.42
Consensus pattern (23 bp):
CTCTCAAATTTCCTTCCAAATTC
Found at i:26309843 original size:11 final size:11
Alignment explanation
Indices: 26309790--26309845 Score: 53
Period size: 12 Copynumber: 5.0 Consensus size: 11
26309780 AAACAAATCC
26309790 TCTCTCAAATT
1 TCTCTCAAATT
*
26309801 TCCTCTCAACTT
1 T-CTCTCAAATT
*
26309813 CCTCTC-AATT
1 TCTCTCAAATT
26309823 TC-CTTCCAAATT
1 TCTC-T-CAAATT
26309835 TCTCTCAAATT
1 TCTCTCAAATT
26309846 CATATTTAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
9 1 0.03
10 5 0.14
11 13 0.36
12 16 0.44
13 1 0.03
ACGTcount: A:0.23, C:0.34, G:0.00, T:0.43
Consensus pattern (11 bp):
TCTCTCAAATT
Found at i:26309912 original size:363 final size:366
Alignment explanation
Indices: 26309202--26309933 Score: 1209
Period size: 363 Copynumber: 2.0 Consensus size: 366
26309192 GTCAGCGCGC
* * *
26309202 TTTGATGATGTGGCAACAAAGTGCGGCCTTGAGAGTGCGATTTGTTGCCACGTCAGCAAAGCACT
1 TTTGATGATGTGGCAACAAAGCGCGGCCTTGAGAGCGCAATTTGTTGCCACGTCAGCAAAGCACT
* *
26309267 CTGACGTGGCCGTGATTTGATGACGCGGCGCGTCCCTGGGGACACGATTTAGACCACACGTGAAT
66 CTGACGTGGCCGCGATTTGATGACGCGGCGCGTCCCTGGGGACACGATTTAGACCACACGTGAAC
*
26309332 AGTACAACGGTCAAAAATTTGACCGTTGCCCCCCCAACGGTAAAAAAAAAAATCCTATAAATACC
131 AGTACAACGGTCAAAAATTTGACCGTTGCCCCCCCAACAGTAAAAAAAAAAATCCTATAAATACC
* * * *
26309397 CCCACCCCTTTTTTTTTCACAAACAAATCCTGTCTCAAATTTCCTTTCAATTTCCTCTCAATTTC
196 CCCACCCCTTTTTTTTCCACAAACAAATCCTCTCTCAAATTTCCTCTCAACTTCCTCTCAATTTC
* *
26309462 CTTTCAAATTTCTCTCAAATTCATATTTAATCTCAATTAGCTCTCAATATCCTTTTAAATTTCTC
261 CTTCCAAATTTCTCTCAAATTCATATTTAATCTCAATTAGCTCTCAATATACTTTTAAATTTCTC
26309527 TTAAATCCCTATTTTCAAATAATTTTAAAAAATTTTGATTT
326 TTAAATCCCTATTTTCAAATAATTTTAAAAAATTTTGATTT
* * * *
26309568 TTTGATGATGTGGCAACAAAGCGCTGCCTTGAGAGCGCAATTTGTTGCCATGTTAGCAAAGCGCT
1 TTTGATGATGTGGCAACAAAGCGCGGCCTTGAGAGCGCAATTTGTTGCCACGTCAGCAAAGCACT
* * * * *
26309633 CTGACGTGGCCGCGATTTGATGACGTGGTGCGTCCCTGGGGACTCGATTTAGACCTCGCGTGAAC
66 CTGACGTGGCCGCGATTTGATGACGCGGCGCGTCCCTGGGGACACGATTTAGACCACACGTGAAC
* * *
26309698 AGTGCAATGGTCAAAAATTTGACCGTTGCTCCCCCAACAGT-AAAAAAAAAA-CCTATAAATACC
131 AGTACAACGGTCAAAAATTTGACCGTTGCCCCCCCAACAGTAAAAAAAAAAATCCTATAAATACC
26309761 CCCA-CCCTTTTTTTTCCACAAACAAATCCTCTCTCAAATTTCCTCTCAACTTCCTCTCAATTTC
196 CCCACCCCTTTTTTTTCCACAAACAAATCCTCTCTCAAATTTCCTCTCAACTTCCTCTCAATTTC
*
26309825 CTTCCAAATTTCTCTCAAATTCATATTTAATCTCAATTAGCTCTCAATTTACTTTTAAATTTCTC
261 CTTCCAAATTTCTCTCAAATTCATATTTAATCTCAATTAGCTCTCAATATACTTTTAAATTTCTC
*
26309890 TTAAATCCCTATTTTTAAATAATTTTAAAAAATTTTGATTT
326 TTAAATCCCTATTTTCAAATAATTTTAAAAAATTTTGATTT
26309931 TTT
1 TTT
26309934 TAAATCGAAA
Statistics
Matches: 340, Mismatches: 26, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
363 161 0.47
364 16 0.05
365 10 0.03
366 153 0.45
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (366 bp):
TTTGATGATGTGGCAACAAAGCGCGGCCTTGAGAGCGCAATTTGTTGCCACGTCAGCAAAGCACT
CTGACGTGGCCGCGATTTGATGACGCGGCGCGTCCCTGGGGACACGATTTAGACCACACGTGAAC
AGTACAACGGTCAAAAATTTGACCGTTGCCCCCCCAACAGTAAAAAAAAAAATCCTATAAATACC
CCCACCCCTTTTTTTTCCACAAACAAATCCTCTCTCAAATTTCCTCTCAACTTCCTCTCAATTTC
CTTCCAAATTTCTCTCAAATTCATATTTAATCTCAATTAGCTCTCAATATACTTTTAAATTTCTC
TTAAATCCCTATTTTCAAATAATTTTAAAAAATTTTGATTT
Found at i:26311758 original size:18 final size:18
Alignment explanation
Indices: 26311731--26311768 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
26311721 CAGGTGCGTT
* *
26311731 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
26311749 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
26311767 TC
1 TC
26311769 TTTTTCCCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.29, G:0.08, T:0.42
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:26312038 original size:21 final size:21
Alignment explanation
Indices: 26312012--26312074 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
26312002 CAACTCCGAC
*
26312012 AACCAG-ATGCCCTACCGGAAG
1 AACCAGAAT-CCCCACCGGAAG
*
26312033 AACCAGAATCCCCACCGGAGG
1 AACCAGAATCCCCACCGGAAG
*
26312054 AACCACAA-CCGCCACCGGAAG
1 AACCAGAATCC-CCACCGGAAG
26312075 CTGGACAAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
20 2 0.06
21 32 0.89
22 2 0.06
ACGTcount: A:0.35, C:0.38, G:0.22, T:0.05
Consensus pattern (21 bp):
AACCAGAATCCCCACCGGAAG
Found at i:26312382 original size:21 final size:21
Alignment explanation
Indices: 26312353--26312502 Score: 84
Period size: 22 Copynumber: 7.0 Consensus size: 21
26312343 ACCCTAATCC
*
26312353 TAACCCTTAACTTAAAAACCT
1 TAACCCTTAACTTAAAAACCG
* * * **
26312374 TAACACTTAAATCAAAAAGGG
1 TAACCCTTAACTTAAAAACCG
*
26312395 TAACCCTTAACTTAAAAACCCC
1 TAACCCTTAACTTAAAAA-CCG
* * * *
26312417 AAACCCTAAACCTAAAAACCA
1 TAACCCTTAACTTAAAAACCG
* * * *
26312438 TAAACTCTAAACATAAAAACCCC
1 T-AACCCTTAACTTAAAAA-CCG
* * * *
26312461 AAACCCTAAACATAAAAACCA
1 TAACCCTTAACTTAAAAACCG
*
26312482 TAAACCCTAAACTTAAAAACC
1 T-AACCCTTAACTTAAAAACC
26312503 CCAAACCCCA
Statistics
Matches: 100, Mismatches: 25, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
21 34 0.34
22 64 0.64
23 2 0.02
ACGTcount: A:0.51, C:0.29, G:0.02, T:0.18
Consensus pattern (21 bp):
TAACCCTTAACTTAAAAACCG
Found at i:26312421 original size:22 final size:22
Alignment explanation
Indices: 26312396--26312681 Score: 187
Period size: 22 Copynumber: 12.4 Consensus size: 22
26312386 CAAAAAGGGT
* *
26312396 AACCCTTAACTTAAAAACCCCA
1 AACCCTAAACATAAAAACCCCA
* **
26312418 AACCCTAAACCTAAAAACCATA
1 AACCCTAAACATAAAAACCCCA
*
26312440 AACTCTAAACATAAAAACCCCA
1 AACCCTAAACATAAAAACCCCA
**
26312462 AACCCTAAACATAAAAACCATA
1 AACCCTAAACATAAAAACCCCA
*
26312484 AACCCTAAACTTAAAAACCCCA
1 AACCCTAAACATAAAAACCCCA
* **
26312506 AACCCCAAACTTTAAACCTAAAAACCTTA
1 AA--CC---C--TAAACATAAAAACCCCA
* *
26312535 AACCCTAAACTTAAAAACCACA
1 AACCCTAAACATAAAAACCCCA
* *
26312557 AACCCTAAACCTAAAAA-CCCT
1 AACCCTAAACATAAAAACCCCA
* * *
26312578 AACCCTTAACTTAAAGACAACAAAACCTA
1 AACCCTAAACAT-AA-A-AAC----CCCA
* * *
26312607 AACCTTAAACTTAAAAACCACA
1 AACCCTAAACATAAAAACCCCA
* **
26312629 AACCCTAAACCTAAAAACCTTA
1 AACCCTAAACATAAAAACCCCA
** *
26312651 AACCCTAAATTTAAAAACCCTA
1 AACCCTAAACATAAAAACCCCA
26312673 AACCCTAAA
1 AACCCTAAA
26312682 ACCTTAACTT
Statistics
Matches: 211, Mismatches: 38, Indels: 30
0.76 0.14 0.11
Matches are distributed among these distances:
21 12 0.06
22 156 0.74
23 1 0.00
24 5 0.02
26 3 0.01
27 4 0.02
28 2 0.01
29 28 0.13
ACGTcount: A:0.52, C:0.31, G:0.00, T:0.16
Consensus pattern (22 bp):
AACCCTAAACATAAAAACCCCA
Found at i:26312457 original size:44 final size:44
Alignment explanation
Indices: 26312396--26312681 Score: 250
Period size: 44 Copynumber: 6.2 Consensus size: 44
26312386 CAAAAAGGGT
* *
26312396 AACCCTTAACTTAAAAACCCCAAACCCTAAACCTAAAAACCATA
1 AACCCTAAACATAAAAACCCCAAACCCTAAACCTAAAAACCATA
* *
26312440 AACTCTAAACATAAAAACCCCAAACCCTAAACATAAAAACCATA
1 AACCCTAAACATAAAAACCCCAAACCCTAAACCTAAAAACCATA
* *
26312484 AACCCTAAACTTAAAAACCCCAAACCCCAAACTTTAAACCTAAAAACCTTA
1 AACCCTAAACATAAAAACCCCAAA--CC---C--TAAACCTAAAAACCATA
* * *
26312535 AACCCTAAACTTAAAAACCACAAACCCTAAACCTAAAAACCCT-
1 AACCCTAAACATAAAAACCCCAAACCCTAAACCTAAAAACCATA
* * * * * *
26312578 AACCCTTAACTTAAAGACAACAAAACCTAAACCTTAAACTTAAAAACCACA
1 AACCCTAAACAT-AA-A-AAC----CCCAAACCCTAAACCTAAAAACCATA
* ** ** *
26312629 AACCCTAAACCTAAAAACCTTAAACCCTAAATTTAAAAACCCTA
1 AACCCTAAACATAAAAACCCCAAACCCTAAACCTAAAAACCATA
26312673 AACCCTAAA
1 AACCCTAAA
26312682 ACCTTAACTT
Statistics
Matches: 203, Mismatches: 24, Indels: 30
0.79 0.09 0.12
Matches are distributed among these distances:
43 11 0.05
44 109 0.54
45 1 0.00
46 6 0.03
48 3 0.01
49 4 0.02
50 21 0.10
51 48 0.24
ACGTcount: A:0.52, C:0.31, G:0.00, T:0.16
Consensus pattern (44 bp):
AACCCTAAACATAAAAACCCCAAACCCTAAACCTAAAAACCATA
Found at i:26312487 original size:51 final size:49
Alignment explanation
Indices: 26312432--26312643 Score: 159
Period size: 51 Copynumber: 4.3 Consensus size: 49
26312422 CTAAACCTAA
*
26312432 AAACCATAAACTCTAAACATAAAAACCCCAAACCCTAAACATAAAAACCAT
1 AAACCCTAAAC-CTAAACATAAAAACCCCAAACCCTAAAC-TAAAAACCAT
* ** *
26312483 AAACCCTAAA-CT-----TAAAAACCCCAAACCCCAAACTTTAAACCTAA
1 AAACCCTAAACCTAAACATAAAAACCCCAAACCCTAAACTAAAAACC-AT
* * * *
26312527 AAACCTTAAACCCTAAACTTAAAAACCACAAACCCTAAACCTAAAAACCCT
1 AAACCCTAAA-CCTAAACATAAAAACCCCAAACCCTAAA-CTAAAAACCAT
* * * * * * * *
26312578 -AACCCTTAACTTAAAGACAACAAAACCTAAACCTTAAACTTAAAAACCAC
1 AAACCCTAAACCTAAACATAA-AAACCCCAAACCCTAAAC-TAAAAACCAT
26312628 AAACCCTAAACCTAAA
1 AAACCCTAAACCTAAA
26312644 AACCTTAAAC
Statistics
Matches: 123, Mismatches: 26, Indels: 24
0.71 0.15 0.14
Matches are distributed among these distances:
43 6 0.05
44 30 0.24
46 2 0.02
49 10 0.08
50 28 0.23
51 40 0.33
52 7 0.06
ACGTcount: A:0.53, C:0.31, G:0.00, T:0.16
Consensus pattern (49 bp):
AAACCCTAAACCTAAACATAAAAACCCCAAACCCTAAACTAAAAACCAT
Done.