Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62175169
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 981721 characters in sequence are not A, C, G, or T
File 88 of 202
Found at i:26312559 original size:29 final size:29
Alignment explanation
Indices: 26312490--26312571 Score: 87
Period size: 29 Copynumber: 2.9 Consensus size: 29
26312480 CATAAACCCT
* * * *
26312490 AAACTTAAAAACCCCAAACCCCAAACTTT
1 AAACCTAAAAACCCTAAACCCTAAACTTA
*
26312519 AAACCTAAAAACCTTAAACCCTAAACTTAA
1 AAACCTAAAAACCCTAAACCCTAAACTT-A
*
26312549 AAACC-ACAAACCCTAAA-CCTAAA
1 AAACCTAAAAACCCTAAACCCTAAA
26312572 AACCCTAACC
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
28 6 0.13
29 34 0.76
30 5 0.11
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (29 bp):
AAACCTAAAAACCCTAAACCCTAAACTTA
Found at i:26312601 original size:43 final size:44
Alignment explanation
Indices: 26312518--26312611 Score: 136
Period size: 43 Copynumber: 2.2 Consensus size: 44
26312508 CCCCAAACTT
* * *
26312518 TAAACCTAAAAACCTTAAACCCTAAACTTAAAAACCACAAACCC
1 TAAACCTAAAAACCCTAAACCCTAAACTTAAAAACAACAAAACC
* *
26312562 TAAACCTAAAAACCCT-AACCCTTAACTTAAAGACAACAAAACC
1 TAAACCTAAAAACCCTAAACCCTAAACTTAAAAACAACAAAACC
26312605 TAAACCT
1 TAAACCT
26312612 TAAACTTAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 30 0.67
44 15 0.33
ACGTcount: A:0.51, C:0.31, G:0.01, T:0.17
Consensus pattern (44 bp):
TAAACCTAAAAACCCTAAACCCTAAACTTAAAAACAACAAAACC
Found at i:26312602 original size:29 final size:30
Alignment explanation
Indices: 26312570--26312640 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 30
26312560 CCTAAACCTA
* *
26312570 AAAACCCTAACCCTT-AACTTAAAGACAAC
1 AAAACCCTAAACCTTAAACTTAAAAACAAC
*
26312599 AAAA-CCTAAACCTTAAACTTAAAAACCAC
1 AAAACCCTAAACCTTAAACTTAAAAACAAC
26312628 -AAACCCTAAACCT
1 AAAACCCTAAACCT
26312641 AAAAACCTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 12 0.32
29 25 0.68
ACGTcount: A:0.51, C:0.31, G:0.01, T:0.17
Consensus pattern (30 bp):
AAAACCCTAAACCTTAAACTTAAAAACAAC
Found at i:26312653 original size:29 final size:29
Alignment explanation
Indices: 26312476--26312654 Score: 86
Period size: 29 Copynumber: 6.2 Consensus size: 29
26312466 CTAAACATAA
* * **
26312476 AAACCATAAACCCTAAACTTAAAAACCCC
1 AAACCACAAACCCTAAACCTAAAAACCTT
* **
26312505 AAACCCCAAACTTTAAACCTAAAAACCTT
1 AAACCACAAACCCTAAACCTAAAAACCTT
* * *
26312534 AAACC-CTAAA-CTTAAAAACC-ACAAACCCT
1 AAACCAC-AAACCCT--AAACCTAAAAACCTT
* * *
26312563 AAACCTAAAAACCCTAACCCT--TAA-CTT
1 AAACC-ACAAACCCTAAACCTAAAAACCTT
* * *
26312590 AAAGACAACAAAACCTAAACCT-TAAA-CTT
1 -AA-ACCACAAACCCTAAACCTAAAAACCTT
26312619 AAAAACCACAAACCCTAAACCTAAAAACCTT
1 --AAACCACAAACCCTAAACCTAAAAACCTT
26312650 AAACC
1 AAACC
26312655 CTAAATTTAA
Statistics
Matches: 114, Mismatches: 23, Indels: 26
0.70 0.14 0.16
Matches are distributed among these distances:
27 2 0.02
28 19 0.17
29 74 0.65
30 14 0.12
31 5 0.04
ACGTcount: A:0.51, C:0.32, G:0.01, T:0.16
Consensus pattern (29 bp):
AAACCACAAACCCTAAACCTAAAAACCTT
Found at i:26312675 original size:29 final size:28
Alignment explanation
Indices: 26312643--26312708 Score: 78
Period size: 30 Copynumber: 2.3 Consensus size: 28
26312633 CTAAACCTAA
26312643 AAACCTTAAACCCTAAATTTAAAAACCCT
1 AAACCTTAAACCCTAAATTT-AAAACCCT
* * *
26312672 AAACCCTAAAACCTTAACTTTAAAACCCT
1 AAA-CCTTAAACCCTAAATTTAAAACCCT
*
26312701 AACCCTTA
1 AAACCTTA
26312709 CGTTAAATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
28 4 0.13
29 13 0.42
30 14 0.45
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.24
Consensus pattern (28 bp):
AAACCTTAAACCCTAAATTTAAAACCCT
Found at i:26321132 original size:19 final size:18
Alignment explanation
Indices: 26321104--26321144 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
26321094 CTAAATATAT
*
26321104 TATTTACATATTTAACATA
1 TATTTACATATCTAA-ATA
*
26321123 TATTTGCATATCTAAATA
1 TATTTACATATCTAAATA
26321141 TATT
1 TATT
26321145 CCCTGGTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.39, C:0.10, G:0.02, T:0.49
Consensus pattern (18 bp):
TATTTACATATCTAAATA
Found at i:26323000 original size:28 final size:29
Alignment explanation
Indices: 26322952--26323015 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 29
26322942 TGTAACTATC
*
26322952 TTTTCTATTTTTAATAAAAATTAAAT-AT
1 TTTTATATTTTTAATAAAAATTAAATCAT
* *
26322980 TTCTTATATTTTT-ATTAAAATTTAATCAT
1 TT-TTATATTTTTAATAAAAATTAAATCAT
26323009 TTTTATA
1 TTTTATA
26323016 AAATTTATTG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
28 18 0.58
29 13 0.42
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.58
Consensus pattern (29 bp):
TTTTATATTTTTAATAAAAATTAAATCAT
Found at i:26323012 original size:20 final size:20
Alignment explanation
Indices: 26322987--26323034 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
26322977 TATTTCTTAT
26322987 ATTTTTATTAAAATTTAATC
1 ATTTTTATTAAAATTTAATC
* *
26323007 ATTTTTA-TAAAATTTATTG
1 ATTTTTATTAAAATTTAATC
26323026 ATTTTTATT
1 ATTTTTATT
26323035 TTTTATCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (20 bp):
ATTTTTATTAAAATTTAATC
Found at i:26323998 original size:15 final size:15
Alignment explanation
Indices: 26323978--26324011 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
26323968 TTGCTTGGAT
26323978 CACCCCTCGGAACCA
1 CACCCCTCGGAACCA
*
26323993 CACCCCTTGGAACCA
1 CACCCCTCGGAACCA
26324008 CACC
1 CACC
26324012 GCTCACACCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.26, C:0.53, G:0.12, T:0.09
Consensus pattern (15 bp):
CACCCCTCGGAACCA
Found at i:26332163 original size:31 final size:31
Alignment explanation
Indices: 26332128--26332334 Score: 222
Period size: 31 Copynumber: 6.7 Consensus size: 31
26332118 TTATATGTTT
* *
26332128 TATACGTTGCCAAATTTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* * * *
26332159 TATACATTGTCGAATTTGAATTGTTTATAAA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* * *
26332190 TATACATTGCCGAATTTGATTGGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
26332221 TATACATTGTCGAATTTGACTTT-TATATGGA
1 TATACATTGCCGAATTTGA-TTTGTATATAGA
*
26332252 TATACATTGCCGAA-TTGATTTGTATGTAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
** * *
26332282 TATACATTGTTGAATTTGATTCGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
26332313 TATATATTGTCGAA-TTGATTTG
1 TATACATTGCCGAATTTGATTTG
26332335 AGCATTGGAT
Statistics
Matches: 146, Mismatches: 27, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
29 3 0.02
30 29 0.20
31 112 0.77
32 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.44
Consensus pattern (31 bp):
TATACATTGCCGAATTTGATTTGTATATAGA
Found at i:26332300 original size:61 final size:62
Alignment explanation
Indices: 26332128--26332334 Score: 251
Period size: 62 Copynumber: 3.4 Consensus size: 62
26332118 TTATATGTTT
* * * **
26332128 TATACGTTGCCAAATTTGATTTGTATATAGATATACATTGTCGAATTTGAATTGTT-TATAAA
1 TATACATTGCCGAATTTGATTTGTATATAGATATACATTGTCGAATTTG-ATTCTTATATGGA
* * *
26332190 TATACATTGCCGAATTTGATTGGTATATGGTTATACATTGTCGAATTTGACTT-TTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATAGATATACATTGTCGAATTTGA-TTCTTATATGGA
* * *
26332252 TATACATTGCCGAA-TTGATTTGTATGTAGATATACATTGTTGAATTTGATTCGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATAGATATACATTGTCGAATTTGATTCTTATATGGA
* *
26332313 TATATATTGTCGAA-TTGATTTG
1 TATACATTGCCGAATTTGATTTG
26332335 AGCATTGGAT
Statistics
Matches: 127, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
60 2 0.02
61 61 0.48
62 64 0.50
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.44
Consensus pattern (62 bp):
TATACATTGCCGAATTTGATTTGTATATAGATATACATTGTCGAATTTGATTCTTATATGGA
Found at i:26332344 original size:92 final size:93
Alignment explanation
Indices: 26332140--26332344 Score: 229
Period size: 92 Copynumber: 2.2 Consensus size: 93
26332130 TACGTTGCCA
* * * *
26332140 AATTTGA-TTTGTATATAGATATACATTGTCGAATTTGAATTGTTTATAAATATACATTGCCGAA
1 AATTTGACTTTG-ACATGGATATACATTGCCGAATTTGAATTGTATATAAATATACATTGCCGAA
* *
26332204 TTTGATTGGTATATGGTTATACATTGTCG
65 TTTGATTCGTATATGGATATACATTGTCG
* * * * * **
26332233 AATTTGACTTTTATATGGATATACATTGCCGAA-TTGATTTGTATGTAGATATACATTGTTGAAT
1 AATTTGACTTTGACATGGATATACATTGCCGAATTTGAATTGTATATAAATATACATTGCCGAAT
*
26332297 TTGATTCGTATATGGATATATATTGTCG
66 TTGATTCGTATATGGATATACATTGTCG
26332325 AA-TTGA-TTTGAGCATTGGAT
1 AATTTGACTTTGA-CA-TGGAT
26332345 GACTAGTTTC
Statistics
Matches: 95, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
90 4 0.04
91 5 0.05
92 57 0.60
93 26 0.27
94 3 0.03
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (93 bp):
AATTTGACTTTGACATGGATATACATTGCCGAATTTGAATTGTATATAAATATACATTGCCGAAT
TTGATTCGTATATGGATATACATTGTCG
Found at i:26332506 original size:43 final size:43
Alignment explanation
Indices: 26332459--26332586 Score: 195
Period size: 43 Copynumber: 3.0 Consensus size: 43
26332449 TGTGATTTTA
**
26332459 TGTAAGACCATAGCTGGGCTATTACCATCGATTTGAGATTTCG
1 TGTAAGACCATAGCTGGGCTATTGGCATCGATTTGAGATTTCG
*
26332502 TGTAAGAACATAGCTGGGCTATTGGCATCGATTTGAGACTTT-G
1 TGTAAGACCATAGCTGGGCTATTGGCATCGATTTGAGA-TTTCG
**
26332545 TGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTTC
1 TGTAAGACCATAGCTGGGCTATTGGCATCGATTTGAGATTTC
26332587 CATGTAGGAC
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
42 3 0.04
43 71 0.92
44 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATAGCTGGGCTATTGGCATCGATTTGAGATTTCG
Found at i:26338727 original size:31 final size:31
Alignment explanation
Indices: 26338692--26338892 Score: 269
Period size: 31 Copynumber: 6.5 Consensus size: 31
26338682 TTATATGTTT
*
26338692 TATACATTGTCGAATTTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* * * *
26338723 TATACATTGCTGAATTTGAATTGTTTGTAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
26338754 TATACATTGCCGAATTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
26338785 TATACATTGTCGAATTTGATTTGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
*
26338816 TATACATTGCCGAA-TTGATTTGTATGTAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
26338846 TATACATTGCCGAATTTGATTCGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
26338877 TATATATTGCTGAATT
1 TATACATTGCCGAATT
26338893 GCTTTGAGCA
Statistics
Matches: 148, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
30 28 0.19
31 120 0.81
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.44
Consensus pattern (31 bp):
TATACATTGCCGAATTTGATTTGTATATAGA
Found at i:26338908 original size:92 final size:93
Alignment explanation
Indices: 26338692--26338885 Score: 300
Period size: 92 Copynumber: 2.1 Consensus size: 93
26338682 TTATATGTTT
* * * *
26338692 TATACATTGTCGAATTTGATTTGTATATAGATATACATTGCTGAATTTGAATTGTTTGTAGATAT
1 TATACATTGTCGAATTTGATTTGCATATGGATATACATTGCCGAATTTGAATTGTATGTAGATAT
* *
26338757 ACATTGCCGAATTTGATTTGTATATGGT
66 ACATTGCCGAATTTGATTCGTATATGGA
* *
26338785 TATACATTGTCGAATTTGATTTGTATATGGATATACATTGCCGAA-TTGATTTGTATGTAGATAT
1 TATACATTGTCGAATTTGATTTGCATATGGATATACATTGCCGAATTTGAATTGTATGTAGATAT
26338849 ACATTGCCGAATTTGATTCGTATATGGA
66 ACATTGCCGAATTTGATTCGTATATGGA
*
26338877 TATATATTG
1 TATACATTG
26338886 CTGAATTGCT
Statistics
Matches: 94, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
92 51 0.54
93 43 0.46
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (93 bp):
TATACATTGTCGAATTTGATTTGCATATGGATATACATTGCCGAATTTGAATTGTATGTAGATAT
ACATTGCCGAATTTGATTCGTATATGGA
Found at i:26339086 original size:43 final size:43
Alignment explanation
Indices: 26339033--26339163 Score: 199
Period size: 43 Copynumber: 3.0 Consensus size: 43
26339023 TGTCAGACTG
26339033 TAGCTGGGCTATTGGCATCGATATGAGATTTCATGTAAGACCA
1 TAGCTGGGCTATTGGCATCGATATGAGATTTCATGTAAGACCA
* * *
26339076 TAGCTAGGCTATTGGCATCGATTTGAGATTTCGTGTAAGACCA
1 TAGCTGGGCTATTGGCATCGATATGAGATTTCATGTAAGACCA
* * *
26339119 TAGTTGGGCTATTGGCATCAATACGAGATTTCCATGTAAGACCA
1 TAGCTGGGCTATTGGCATCGATATGAGATTT-CATGTAAGACCA
26339163 T
1 T
26339164 GTCTGGGACA
Statistics
Matches: 78, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
43 66 0.85
44 12 0.15
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (43 bp):
TAGCTGGGCTATTGGCATCGATATGAGATTTCATGTAAGACCA
Found at i:26341709 original size:28 final size:27
Alignment explanation
Indices: 26341631--26341698 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
26341621 ATGATCGGGT
* *
26341631 AGGGTAAAATGATCGAATTACCCCCAC
1 AGGGTAAAATGACCGAAATACCCCCAC
*
26341658 AGGGTAAAATGACCGAAATACCCCCAT
1 AGGGTAAAATGACCGAAATACCCCCAC
26341685 AGGGGTAAAATGAC
1 A-GGGTAAAATGAC
26341699 TGTTATACCC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 25 0.68
28 12 0.32
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.16
Consensus pattern (27 bp):
AGGGTAAAATGACCGAAATACCCCCAC
Found at i:26342137 original size:28 final size:28
Alignment explanation
Indices: 26342063--26342151 Score: 99
Period size: 28 Copynumber: 3.2 Consensus size: 28
26342053 ACTGTACCGA
* * *
26342063 TACTGTATTAGGCTAGGGACCACATGGT
1 TACTGTATTAGGCTAAGGCCCACATTGT
*
26342091 TACTGTATTGGGCTAAGGCCCACATTGT
1 TACTGTATTAGGCTAAGGCCCACATTGT
* * * *
26342119 TACTGTATTTGACTAAGGCCTACACTG-
1 TACTGTATTAGGCTAAGGCCCACATTGT
26342146 TACTGT
1 TACTGT
26342152 TACTCAATAG
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 6 0.11
28 47 0.89
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (28 bp):
TACTGTATTAGGCTAAGGCCCACATTGT
Found at i:26348016 original size:26 final size:28
Alignment explanation
Indices: 26347987--26348053 Score: 86
Period size: 27 Copynumber: 2.5 Consensus size: 28
26347977 GCACAAATCA
*
26347987 GTCA-TTTACCCTT-TAGGGGCATTACG
1 GTCATTTTACCCTTACAGGGGCATTACG
* *
26348013 GTCATTTTA-CCTTACAGGGGTATTTCG
1 GTCATTTTACCCTTACAGGGGCATTACG
26348040 GTCATTTTACCCTT
1 GTCATTTTACCCTT
26348054 CGAGGGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 8 0.23
27 23 0.66
28 4 0.11
ACGTcount: A:0.18, C:0.22, G:0.19, T:0.40
Consensus pattern (28 bp):
GTCATTTTACCCTTACAGGGGCATTACG
Found at i:26348060 original size:27 final size:27
Alignment explanation
Indices: 26348001--26348072 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
26347991 TTTACCCTTT
* *
26348001 AGGGGCATTACGGTCATTTTACCTTAC
1 AGGGGTATTTCGGTCATTTTACCTTAC
26348028 AGGGGTATTTCGGTCATTTTACCCTT-C
1 AGGGGTATTTCGGTCATTTTA-CCTTAC
*
26348055 -GAGGGTATTTCAGTCATT
1 AG-GGGTATTTCGGTCATT
26348073 CAACAACCTT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
26 1 0.03
27 35 0.88
28 4 0.10
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (27 bp):
AGGGGTATTTCGGTCATTTTACCTTAC
Found at i:26355156 original size:137 final size:137
Alignment explanation
Indices: 26354910--26355170 Score: 344
Period size: 137 Copynumber: 1.9 Consensus size: 137
26354900 ATGTCATTAG
* * * * * * * *
26354910 GGTTACCATGTTTCGGGTGCTGGTTCTAAATGTCTTACCGATGGCTGAGTTTTGACATTTGTTGC
1 GGTTACAATGTTTCAGGTGCTGGTCCTAAATGTCCTACCGATGGCTAAGGTCTGACATTTGTTAC
* * *
26354975 GGATACTCATCAACTTATGTGAGTGGCAACATGTAGCTACATTCCAACTGTCAGCTTGTATGAGC
66 GAATACTCATCAACTTATGTGAGTGGCAACATGTACCTACATTCCAACCGTCAGCTTGTATGAGC
26355040 AGACCTA
131 AGACCTA
* *
26355047 GGTTACAATGTTTCAGGTGCTGGTCCTGAATGTCCTACCGATGGCTAAGGTCTGGCATTTGTTAC
1 GGTTACAATGTTTCAGGTGCTGGTCCTAAATGTCCTACCGATGGCTAAGGTCTGACATTTGTTAC
* * * * *
26355112 GAATACTCATCAGCTTGTGTGAAG-GGCATCGTGTACCTATATTCCAACCGTCAGCTTGT
66 GAATACTCATCAACTTATGTG-AGTGGCAACATGTACCTACATTCCAACCGTCAGCTTGT
26355171 GTGAACAGCA
Statistics
Matches: 105, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
137 103 0.98
138 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.33
Consensus pattern (137 bp):
GGTTACAATGTTTCAGGTGCTGGTCCTAAATGTCCTACCGATGGCTAAGGTCTGACATTTGTTAC
GAATACTCATCAACTTATGTGAGTGGCAACATGTACCTACATTCCAACCGTCAGCTTGTATGAGC
AGACCTA
Found at i:26355187 original size:41 final size:42
Alignment explanation
Indices: 26355121--26355216 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
26355111 CGAATACTCA
** *
26355121 TCAGCTTGTGTGAAGGGCATCGTGTA-CCTATATTCCAACCG
1 TCAGCTTGTGTGAACAGCATCGTGTAGCCTACATTCCAACCG
* * *
26355162 TCAGCTTGTGTGAACAGCATTGTGTAGCTTACATTCCTACCG
1 TCAGCTTGTGTGAACAGCATCGTGTAGCCTACATTCCAACCG
*
26355204 CCAGCTTGTGTGA
1 TCAGCTTGTGTGA
26355217 GCAAGCCCAT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 23 0.49
42 24 0.51
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.31
Consensus pattern (42 bp):
TCAGCTTGTGTGAACAGCATCGTGTAGCCTACATTCCAACCG
Found at i:26355937 original size:20 final size:20
Alignment explanation
Indices: 26355912--26355949 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
26355902 TTTAAGCTAT
26355912 AGTAAGTAAATGCAATGGAA
1 AGTAAGTAAATGCAATGGAA
*
26355932 AGTAAGTAAATGGAATGG
1 AGTAAGTAAATGCAATGG
26355950 TTCAAAGTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.03, G:0.29, T:0.21
Consensus pattern (20 bp):
AGTAAGTAAATGCAATGGAA
Found at i:26357693 original size:41 final size:41
Alignment explanation
Indices: 26357638--26357759 Score: 129
Period size: 41 Copynumber: 3.0 Consensus size: 41
26357628 TTAATTAAAA
*
26357638 CAGATTCACAGGCACTTAGCCTGTTAGGCTTAAAGCCTGATT
1 CAGA-TCACCGGCACTTAGCCTGTTAGGCTTAAAGCCTGATT
** * * *
26357680 CAGATCAGTGGCACTTAGCCTGCTAGGCTTATAGCTTGATT
1 CAGATCACCGGCACTTAGCCTGTTAGGCTTAAAGCCTGATT
* * * *
26357721 CAGTTCACCAGCACATAGCCT-TCTAGGCTTTAAGCCTGA
1 CAGATCACCGGCACTTAGCCTGT-TAGGCTTAAAGCCTGA
26357760 ATTGATTCAC
Statistics
Matches: 65, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
41 61 0.94
42 4 0.06
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGTTAGGCTTAAAGCCTGATT
Found at i:26357769 original size:41 final size:41
Alignment explanation
Indices: 26357649--26357788 Score: 124
Period size: 41 Copynumber: 3.4 Consensus size: 41
26357639 AGATTCACAG
* * * * ***
26357649 GCACTTAGCCTGTTAGGCTTAAAGCCTGATTCAGATCAGTG
1 GCACATAGCCTGCTAGGCTTATAGCCTGATTCAGTTCACCA
* *
26357690 GCACTTAGCCTGCTAGGCTTATAGCTTGATTCAGTTCACCA
1 GCACATAGCCTGCTAGGCTTATAGCCTGATTCAGTTCACCA
* *
26357731 GCACATAGCCTTCTAGGCTT-TAAGCCTGAATTGA-TTCACCA
1 GCACATAGCCTGCTAGGCTTAT-AGCCTG-ATTCAGTTCACCA
*
26357772 GCA-ATATACCTGCTAGG
1 GCACATA-GCCTGCTAGG
26357789 TGATGAGCCT
Statistics
Matches: 83, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
40 4 0.05
41 75 0.90
42 4 0.05
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (41 bp):
GCACATAGCCTGCTAGGCTTATAGCCTGATTCAGTTCACCA
Found at i:26365716 original size:41 final size:41
Alignment explanation
Indices: 26365671--26365858 Score: 265
Period size: 41 Copynumber: 4.6 Consensus size: 41
26365661 TAAAATAGAT
26365671 TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGA
26365712 TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGA
* * * *
26365753 TCACCGGCACTTAGCCTGCTAGGCTTATATCTTGATTCAGT
1 TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGA
* *
26365794 TCACCGGCACTTAGCCTGCTAAGCTTTAAGCCTGAATT--GA
1 TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTG-ATTCAGA
*
26365834 TTCACCGGCAATATA-CCTGCTAGGC
1 -TCACCGGCACT-TAGCCTGCTAGGC
26365859 GCTGAGCCTG
Statistics
Matches: 132, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
40 1 0.01
41 126 0.95
42 5 0.04
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (41 bp):
TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGA
Found at i:26369335 original size:25 final size:25
Alignment explanation
Indices: 26369301--26369420 Score: 177
Period size: 25 Copynumber: 4.8 Consensus size: 25
26369291 CAAGCCCATT
* *
26369301 TTCACAGCTCGTGTGAGCATTCTAA
1 TTCACAGCTCATGTGAGCATTCTGA
*
26369326 TTCACAGCTCATGTGAGCATTCTGG
1 TTCACAGCTCATGTGAGCATTCTGA
*
26369351 TTCACAGCTCATGTGAGCATTCTGG
1 TTCACAGCTCATGTGAGCATTCTGA
26369376 TTCACAGCTCATGTGAGCATTCTGA
1 TTCACAGCTCATGTGAGCATTCTGA
* * *
26369401 TCCACAGCTCGTGTAAGCAT
1 TTCACAGCTCATGTGAGCAT
26369421 ACATGTACAT
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 88 1.00
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.31
Consensus pattern (25 bp):
TTCACAGCTCATGTGAGCATTCTGA
Found at i:26370085 original size:20 final size:19
Alignment explanation
Indices: 26370062--26370103 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
26370052 TAAAGAAATT
26370062 AAATAC-AATGGAAAGTAATG
1 AAATACAAAT-GAAAGTAA-G
*
26370082 AAATGCAAATGAAAGTAAG
1 AAATACAAATGAAAGTAAG
26370101 AAA
1 AAA
26370104 ATTTGAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 13 0.65
21 3 0.15
ACGTcount: A:0.60, C:0.05, G:0.19, T:0.17
Consensus pattern (19 bp):
AAATACAAATGAAAGTAAG
Found at i:26374346 original size:20 final size:20
Alignment explanation
Indices: 26374315--26374370 Score: 87
Period size: 20 Copynumber: 2.8 Consensus size: 20
26374305 AGACGATGAA
26374315 CCATTCCATTTACTTACTTT
1 CCATTCCATTTACTTACTTT
*
26374335 CTACTT-CATTTACTTACTTT
1 CCA-TTCCATTTACTTACTTT
26374355 CCATTCCATTTACTTA
1 CCATTCCATTTACTTA
26374371 GCATAAGCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.06
20 28 0.88
21 2 0.06
ACGTcount: A:0.21, C:0.29, G:0.00, T:0.50
Consensus pattern (20 bp):
CCATTCCATTTACTTACTTT
Found at i:26379255 original size:17 final size:18
Alignment explanation
Indices: 26379233--26379267 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
26379223 ATTTTAGATA
*
26379233 AATATTATATT-AAATTT
1 AATATTAAATTGAAATTT
26379250 AATATTAAATTGAAATTT
1 AATATTAAATTGAAATTT
26379268 TGGATTAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (18 bp):
AATATTAAATTGAAATTT
Found at i:26382983 original size:21 final size:22
Alignment explanation
Indices: 26382959--26383003 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
26382949 AGAAAAAGAG
26382959 AAATACAAAAAAG-AATAG-ATC
1 AAAT-CAAAAAAGAAATAGAATC
*
26382980 AAATCAAGAAAGAAATAGAATC
1 AAATCAAAAAAGAAATAGAATC
26383002 AA
1 AA
26383004 CAATTTGTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 9 0.43
22 5 0.24
ACGTcount: A:0.67, C:0.09, G:0.11, T:0.13
Consensus pattern (22 bp):
AAATCAAAAAAGAAATAGAATC
Found at i:26385969 original size:35 final size:35
Alignment explanation
Indices: 26385838--26385969 Score: 176
Period size: 35 Copynumber: 3.8 Consensus size: 35
26385828 AAATGATACA
* *
26385838 TGAATAGGAGAGATTCCCTGCAACAACATAATGCG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
* * * *
26385873 TGAACAGGAGAGATTCCTTGCAA-GAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
*
26385907 TGAACAGGAGAGGTTCCCTGCAACAAAATAATGCG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
* *
26385942 TGAACAGGAAATATTCCCTGCAACAAAA
1 TGAACAGGAGAGATTCCCTGCAACAAAA
26385970 GACAAGTGAA
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
34 28 0.34
35 54 0.66
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (35 bp):
TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
Found at i:26385979 original size:69 final size:69
Alignment explanation
Indices: 26385838--26385979 Score: 185
Period size: 69 Copynumber: 2.1 Consensus size: 69
26385828 AAATGATACA
* * * * * *
26385838 TGAATAGGAGAGATTCCCTGCAACAACATAATGCGTGAACAGGAGAGATTCCTTGCAAGAAATGA
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAAAGATTCCCTGCAACAAAAGA
***
26385903 TGTG
66 CAAG
* *
26385907 TGAACAGGAGAGGTTCCCTGCAACAAAATAATGCGTGAACAGGAAATATTCCCTGCAACAAAAGA
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAAAGATTCCCTGCAACAAAAGA
26385972 CAAG
66 CAAG
26385976 TGAA
1 TGAA
26385980 TAGTTCTGTA
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.19
Consensus pattern (69 bp):
TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAAAGATTCCCTGCAACAAAAGA
CAAG
Found at i:26386237 original size:21 final size:21
Alignment explanation
Indices: 26386213--26386267 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
26386203 AATTTAATTT
26386213 TTAAGTTTCCAAATTTTCAAA
1 TTAAGTTTCCAAATTTTCAAA
*
26386234 TTAAGTTTTCAAATTTTCAAA
1 TTAAGTTTCCAAATTTTCAAA
*
26386255 TCAAGTTTCCAAA
1 TTAAGTTTCCAAA
26386268 CTTAAGCTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.38, C:0.15, G:0.05, T:0.42
Consensus pattern (21 bp):
TTAAGTTTCCAAATTTTCAAA
Found at i:26388167 original size:15 final size:14
Alignment explanation
Indices: 26388143--26388172 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
26388133 GAAACGCTAG
26388143 TTTCAGAGCTCCAT
1 TTTCAGAGCTCCAT
26388157 TTTCTAGAGCTCCAT
1 TTTC-AGAGCTCCAT
26388172 T
1 T
26388173 AATTTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (14 bp):
TTTCAGAGCTCCAT
Found at i:26393979 original size:12 final size:12
Alignment explanation
Indices: 26393964--26393995 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
26393954 TATCGAATTA
26393964 AATTAATTCAAT
1 AATTAATTCAAT
26393976 AATTAATTCAAT
1 AATTAATTCAAT
26393988 AATTAATT
1 AATTAATT
26393996 TAATTCATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (12 bp):
AATTAATTCAAT
Found at i:26405912 original size:18 final size:18
Alignment explanation
Indices: 26405889--26405925 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
26405879 CTTTTGGTTC
26405889 TTCATGAATGTAAATAGT
1 TTCATGAATGTAAATAGT
26405907 TTCATGAATGTAAATAGT
1 TTCATGAATGTAAATAGT
26405925 T
1 T
26405926 CGAACTCATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.16, T:0.41
Consensus pattern (18 bp):
TTCATGAATGTAAATAGT
Found at i:26408096 original size:67 final size:67
Alignment explanation
Indices: 26407986--26408119 Score: 232
Period size: 67 Copynumber: 2.0 Consensus size: 67
26407976 GCTAAAAGTA
26407986 CAAAGCATAGAAAAAATTAACTTCAAAATTTTTCCCAAGGTTAAAGATATCAATGTCTTAATGTG
1 CAAAGCATAGAAAAAATTAACTTCAAAATTTTTCCCAAGGTTAAAGATATCAATGTCTTAATGTG
26408051 GT
66 GT
* * * *
26408053 CAAAGCATAGAAAAAATTAGCTTCAAAATTTTTCCCTATGTTAAAGATATCAATGTCTTATTGTG
1 CAAAGCATAGAAAAAATTAACTTCAAAATTTTTCCCAAGGTTAAAGATATCAATGTCTTAATGTG
26408118 GT
66 GT
26408120 GTAGTGCTAA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 63 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (67 bp):
CAAAGCATAGAAAAAATTAACTTCAAAATTTTTCCCAAGGTTAAAGATATCAATGTCTTAATGTG
GT
Found at i:26408192 original size:19 final size:19
Alignment explanation
Indices: 26408164--26408256 Score: 64
Period size: 19 Copynumber: 4.8 Consensus size: 19
26408154 ACTTGGACAA
26408164 TATT-ATTATGTGGTGAAC
1 TATTAATTATGTGGTGAAC
* ** *
26408182 TATTAATTATGTTGTTTAG
1 TATTAATTATGTGGTGAAC
* * ** *
26408201 TACTAAATATGTACTTGGACAG
1 TATTAATTATGT-GGT-GA-AC
26408223 TATT-ATTATGTGGTGAAC
1 TATTAATTATGTGGTGAAC
26408241 TATTAATTATGTGGTG
1 TATTAATTATGTGGTG
26408257 TAGGATTAAA
Statistics
Matches: 55, Mismatches: 15, Indels: 9
0.70 0.19 0.11
Matches are distributed among these distances:
18 9 0.16
19 33 0.60
20 2 0.04
21 6 0.11
22 5 0.09
ACGTcount: A:0.29, C:0.05, G:0.20, T:0.45
Consensus pattern (19 bp):
TATTAATTATGTGGTGAAC
Found at i:26408235 original size:59 final size:59
Alignment explanation
Indices: 26408127--26408285 Score: 232
Period size: 59 Copynumber: 2.7 Consensus size: 59
26408117 GGTGTAGTGC
26408127 TAATTATGTGGTGTAGTAC--AATAATGCACTTGGACAATATTATTATGTGGTGAACTAT
1 TAATTATGTGGTGTAGTACTAAAT-ATGCACTTGGACAATATTATTATGTGGTGAACTAT
* * * *
26408185 TAATTATGTTGTTTAGTACTAAATATGTACTTGGACAGTATTATTATGTGGTGAACTAT
1 TAATTATGTGGTGTAGTACTAAATATGCACTTGGACAATATTATTATGTGGTGAACTAT
* * *
26408244 TAATTATGTGGTGTAGGATTAAATATGCACTTGAACAATATT
1 TAATTATGTGGTGTAGTACTAAATATGCACTTGGACAATATT
26408286 GTACTCATGT
Statistics
Matches: 88, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
58 17 0.19
59 68 0.77
60 3 0.03
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (59 bp):
TAATTATGTGGTGTAGTACTAAATATGCACTTGGACAATATTATTATGTGGTGAACTAT
Found at i:26408264 original size:19 final size:19
Alignment explanation
Indices: 26408227--26408270 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
26408217 GGACAGTATT
*
26408227 ATTATGTGGTGAACTATTA
1 ATTATGTGGTGAACGATTA
* *
26408246 ATTATGTGGTGTAGGATTA
1 ATTATGTGGTGAACGATTA
*
26408265 AATATG
1 ATTATG
26408271 CACTTGAACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.32, C:0.02, G:0.25, T:0.41
Consensus pattern (19 bp):
ATTATGTGGTGAACGATTA
Found at i:26408388 original size:3 final size:3
Alignment explanation
Indices: 26408374--26408420 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
26408364 AAAACCTAAT
*
26408374 TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26408421 CAATCTTTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26408985 original size:56 final size:56
Alignment explanation
Indices: 26408915--26409028 Score: 165
Period size: 56 Copynumber: 2.0 Consensus size: 56
26408905 CACAAACAAA
* ** *
26408915 CTACAACATTCTTAAAAATGCCTTGCTAATTTCATAACATTAGGAATATAGTTCCG
1 CTACAACATCCTTAAAAATGCCTTGCTAATTTCATAACACCAGGAATATAGTTACG
* * *
26408971 CTACAACATCCTTAAAAATGCTTTGCTAATTTTATAACACCAGGAATCTAGTTACG
1 CTACAACATCCTTAAAAATGCCTTGCTAATTTCATAACACCAGGAATATAGTTACG
26409027 CT
1 CT
26409029 GGCACGACAA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.33
Consensus pattern (56 bp):
CTACAACATCCTTAAAAATGCCTTGCTAATTTCATAACACCAGGAATATAGTTACG
Found at i:26413444 original size:11 final size:11
Alignment explanation
Indices: 26413430--26413456 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
26413420 GTTAGATATA
26413430 TATGGATGAGT
1 TATGGATGAGT
26413441 TATGGATGAGT
1 TATGGATGAGT
26413452 TATGG
1 TATGG
26413457 TCAAATATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.37, T:0.37
Consensus pattern (11 bp):
TATGGATGAGT
Found at i:26414137 original size:20 final size:21
Alignment explanation
Indices: 26414109--26414149 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
26414099 CCTGCAGTTC
* *
26414109 AAATTTTCCAACT-TTTTCTT
1 AAATGTTCCAAATGTTTTCTT
26414129 AAATGTTCCAAATGTTTTCTT
1 AAATGTTCCAAATGTTTTCTT
26414150 TTTGGCCCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.27, C:0.17, G:0.05, T:0.51
Consensus pattern (21 bp):
AAATGTTCCAAATGTTTTCTT
Found at i:26416565 original size:36 final size:34
Alignment explanation
Indices: 26416501--26416574 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 34
26416491 AGAATTGCGC
26416501 CCTACACTGGTCGGTAAAACTGAAAAATAGATGTG
1 CCTACACTGGTCGGTAAAACTGAAAAATAGAT-TG
* * *
26416536 CCTAGCACTGGTCGGTATAACT-ATCAAATAGGTTG
1 CCTA-CACTGGTCGGTAAAACTGA-AAAATAGATTG
26416571 CCTA
1 CCTA
26416575 ACAGTCCCCG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
35 11 0.32
36 23 0.68
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (34 bp):
CCTACACTGGTCGGTAAAACTGAAAAATAGATTG
Found at i:26418995 original size:23 final size:23
Alignment explanation
Indices: 26418964--26419017 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
26418954 ACCTGCTTTC
* *
26418964 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
26418987 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
26419010 TTACAGTA
1 TTACAGTA
26419018 ACATATTTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:26419108 original size:2 final size:2
Alignment explanation
Indices: 26419103--26419138 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
26419093 ACACACACGC
26419103 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26419139 GCACATAGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26425576 original size:6 final size:6
Alignment explanation
Indices: 26425565--26425604 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
26425555 GGTTTTCTCA
*
26425565 AAATGG AAATGG AAATGG AAATGA AAATGAG AAAT-G AAAT
1 AAATGG AAATGG AAATGG AAATGG AAATG-G AAATGG AAAT
26425605 CTTTTAGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
5 5 0.16
6 22 0.71
7 4 0.13
ACGTcount: A:0.57, C:0.00, G:0.25, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:26426245 original size:23 final size:23
Alignment explanation
Indices: 26426176--26426246 Score: 63
Period size: 25 Copynumber: 2.9 Consensus size: 23
26426166 GCTAAATAGT
26426176 AATAACATAATATTATACTAAAAAA
1 AATAACATAA-ATTA-ACTAAAAAA
* * *
26426201 AACCAA-ATAAAAATTAATTAAACAA
1 AA-TAACAT--AAATTAACTAAAAAA
26426226 AATAACATAAATTAACTAAAA
1 AATAACATAAATTAACTAAAA
26426247 TTAAAGAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
23 11 0.31
24 2 0.06
25 15 0.42
26 6 0.17
27 2 0.06
ACGTcount: A:0.66, C:0.10, G:0.00, T:0.24
Consensus pattern (23 bp):
AATAACATAAATTAACTAAAAAA
Found at i:26439576 original size:55 final size:54
Alignment explanation
Indices: 26439491--26439624 Score: 187
Period size: 55 Copynumber: 2.5 Consensus size: 54
26439481 TCGAGCTCCG
* * ** *
26439491 AAATACCCCTATAGGTTAAAATGATTGAAATACCCCTATAGGGTAAAATGACCA
1 AAATACCCCAATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCA
* * *
26439545 AAATACCCCCCATTGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCG
1 AAATA-CCCCAATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCA
26439600 AAATACCCCAATAGGGTAAAATGAC
1 AAATACCCCAATAGGGTAAAATGAC
26439625 TGTTATACCC
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
54 23 0.33
55 47 0.67
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.19
Consensus pattern (54 bp):
AAATACCCCAATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCA
Found at i:26439635 original size:27 final size:27
Alignment explanation
Indices: 26439488--26439624 Score: 193
Period size: 27 Copynumber: 5.0 Consensus size: 27
26439478 GAATCGAGCT
* *
26439488 CCGAAATACCCCTATAGGTTAAAATGA
1 CCGAAATACCCCCATAGGGTAAAATGA
** *
26439515 TTGAAATACCCCTATAGGGTAAAATGA
1 CCGAAATACCCCCATAGGGTAAAATGA
* *
26439542 CCAAAATACCCCCCATTGGGTAAAATGA
1 CCGAAATA-CCCCCATAGGGTAAAATGA
26439570 CCGAAATACCCCCATAGGGTAAAATGA
1 CCGAAATACCCCCATAGGGTAAAATGA
*
26439597 CCGAAATACCCCAATAGGGTAAAATGA
1 CCGAAATACCCCCATAGGGTAAAATGA
26439624 C
1 C
26439625 TGTTATACCC
Statistics
Matches: 98, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 74 0.76
28 24 0.24
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (27 bp):
CCGAAATACCCCCATAGGGTAAAATGA
Found at i:26441702 original size:26 final size:26
Alignment explanation
Indices: 26441673--26441728 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
26441663 AAGTGTAAGA
26441673 AAAGCAACAGTTTGTCGCGGCATTAC
1 AAAGCAACAGTTTGTCGCGGCATTAC
*
26441699 AAAGCAACAGTTTGTTGCGGCATTAC
1 AAAGCAACAGTTTGTCGCGGCATTAC
26441725 AAAG
1 AAAG
26441729 AAATGTTATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (26 bp):
AAAGCAACAGTTTGTCGCGGCATTAC
Found at i:26443818 original size:20 final size:23
Alignment explanation
Indices: 26443793--26443833 Score: 61
Period size: 20 Copynumber: 1.9 Consensus size: 23
26443783 GTACTCAAGT
26443793 ACATTTT-GTT-GCA-TTTTAGG
1 ACATTTTAGTTAGCAGTTTTAGG
26443813 ACATTTTAGTTAGCAGTTTTA
1 ACATTTTAGTTAGCAGTTTTA
26443834 ATATTGCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 3 0.17
22 3 0.17
23 5 0.28
ACGTcount: A:0.24, C:0.10, G:0.17, T:0.49
Consensus pattern (23 bp):
ACATTTTAGTTAGCAGTTTTAGG
Found at i:26455179 original size:17 final size:17
Alignment explanation
Indices: 26455157--26455201 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
26455147 GAGCGAGATG
26455157 AAGTGAAAAAGATCA-AA
1 AAGTGAAAAAG-TCACAA
*
26455174 AAGTGACAAAGTCACAA
1 AAGTGAAAAAGTCACAA
26455191 AAGTAGAAAAA
1 AAGT-GAAAAA
26455202 CTCAGTCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 3 0.12
17 16 0.67
18 5 0.21
ACGTcount: A:0.62, C:0.09, G:0.18, T:0.11
Consensus pattern (17 bp):
AAGTGAAAAAGTCACAA
Found at i:26464383 original size:137 final size:136
Alignment explanation
Indices: 26464133--26464390 Score: 317
Period size: 137 Copynumber: 1.9 Consensus size: 136
26464123 ACTCGAGCCA
* *
26464133 TAAATGGGTCTGCTCACACAAGCTGATAGTCGAAATGTAGCTACACGATGCCACTCACACAACTT
1 TAAATGGGTCTACTCACACAAGCTGACAGTCGAAATGTAGCTACACGATGCCACTCACACAACTT
* *
26464198 GAAGAGTATCCACAACAAATGTCAAAACTCAGCCATTGATAGGACATTCAGGACCAGCACCTTGA
66 GAAGAGTATCCACAACAAATGCCAAAACTCAGCCATAGATAGGACATTCAGGACCAGCACCTTGA
26464263 ACATGG
131 ACATGG
* * **
26464269 TAAACTGGGTCTACTCACACAAGCTGACGGTC-AGAATGTAAGCTACGC-ATGCTGCTCACACAA
1 TAAA-TGGGTCTACTCACACAAGCTGACAGTCGA-AATGT-AGCTACACGATGCCACTCACACAA
* * * ** *
26464332 GTTGACGAGTATCTGA-AACAAATGCCTGACCTCAGCCATCAG-TAGGACATTCAGGACCA
63 CTTGAAGAGTATC-CACAACAAATGCCAAAACTCAGCCAT-AGATAGGACATTCAGGACCA
26464391 ACAGCTAGAA
Statistics
Matches: 103, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
136 5 0.05
137 89 0.86
138 9 0.09
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.21
Consensus pattern (136 bp):
TAAATGGGTCTACTCACACAAGCTGACAGTCGAAATGTAGCTACACGATGCCACTCACACAACTT
GAAGAGTATCCACAACAAATGCCAAAACTCAGCCATAGATAGGACATTCAGGACCAGCACCTTGA
ACATGG
Found at i:26466616 original size:20 final size:20
Alignment explanation
Indices: 26466583--26466620 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26466573 AATTAAGGTT
26466583 AAATTGTAATTTAATAATTA
1 AAATTGTAATTTAATAATTA
26466603 AAATT-TAATCTTAATAAT
1 AAATTGTAAT-TTAATAAT
26466621 AATATGTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (20 bp):
AAATTGTAATTTAATAATTA
Found at i:26472266 original size:42 final size:42
Alignment explanation
Indices: 26472210--26472309 Score: 164
Period size: 42 Copynumber: 2.4 Consensus size: 42
26472200 CTATATGAAC
*
26472210 GGCACTAAGTGTGCGAAACTAAAATGACGATGCTGAATAATG
1 GGCACTAAGTGTGCGAAACTAAAATGACGATGCTGAATAACG
* * *
26472252 GGCACTAAGTGTGCGAAATTAAAATGATGATGTTGAATAACG
1 GGCACTAAGTGTGCGAAACTAAAATGACGATGCTGAATAACG
26472294 GGCACTAAGTGTGCGA
1 GGCACTAAGTGTGCGA
26472310 TACCGAGAGC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (42 bp):
GGCACTAAGTGTGCGAAACTAAAATGACGATGCTGAATAACG
Found at i:26486874 original size:100 final size:100
Alignment explanation
Indices: 26486701--26486900 Score: 346
Period size: 100 Copynumber: 2.0 Consensus size: 100
26486691 AAAGAAAGTG
* *
26486701 TGCCTGTATCATATTAAATTATTATACCTCCTAGGATTTTGCCTCAAGAAAGTTACTAAGTCAAT
1 TGCCTATATCATATTAAATTATTATACCTCCTAGGATTTTGCCTCAAGAAAGTTAATAAGTCAAT
*
26486766 TTTAAAGACTTAAACCTTCGTACATGTCTATTTCT
66 TTTAAAGACTTAAACCTTCATACATGTCTATTTCT
*
26486801 TGCCTATATCATATTAAATTCTTATACCTCCTAGGATTTTGCCTCAAGAAAGTTAATAAGTCAAT
1 TGCCTATATCATATTAAATTATTATACCTCCTAGGATTTTGCCTCAAGAAAGTTAATAAGTCAAT
**
26486866 TTTAAAGACTTAAACCTTCATGTATGTCTATTTCT
66 TTTAAAGACTTAAACCTTCATACATGTCTATTTCT
26486901 AAAGAAAATG
Statistics
Matches: 94, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 94 1.00
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (100 bp):
TGCCTATATCATATTAAATTATTATACCTCCTAGGATTTTGCCTCAAGAAAGTTAATAAGTCAAT
TTTAAAGACTTAAACCTTCATACATGTCTATTTCT
Found at i:26496745 original size:23 final size:23
Alignment explanation
Indices: 26496719--26496769 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
26496709 ACCTACTTTC
* *
26496719 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
26496742 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
26496765 TTACA
1 TTACA
26496770 TTTCTCTCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:26498396 original size:50 final size:50
Alignment explanation
Indices: 26498305--26498536 Score: 159
Period size: 50 Copynumber: 4.6 Consensus size: 50
26498295 TCCTATACTA
* * * **
26498305 CCAATGTCATATCCCAGATATGGTCTTACATGGGGGT-TCTCATATCGGTGT
1 CCAATGCCATGTCCCAGACATGGTCTTACA--GGGGTCTCTCATATCAATGT
* * ** *
26498356 CC-ATGTCATGTCCCAGACATGGTCTTACGGGGGATCTCTCATCCCAGTG-
1 CCAATGCCATGTCCCAGACATGGTCTTACAGGGG-TCTCTCATATCAATGT
* * **
26498405 CCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATAATCTCAATGAT
1 CCAATGCCATGTCCCAGACATGGTCTTACA-GGGGTCTCTCAT-A--TCAATG-T
* ** * *
26498460 GCCAACGCCATGTCCCAGACATGGTCTTACATTGG-CTCACATATCGATGT
1 -CCAATGCCATGTCCCAGACATGGTCTTACAGGGGTCTCTCATATCAATGT
* *
26498510 -CGATGCCATGTCCCAAACATGGTCTTA
1 CCAATGCCATGTCCCAGACATGGTCTTA
26498537 TACGAGATTG
Statistics
Matches: 147, Mismatches: 24, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
48 28 0.19
49 3 0.02
50 65 0.44
51 10 0.07
53 5 0.03
54 6 0.04
55 1 0.01
56 29 0.20
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACAGGGGTCTCTCATATCAATGT
Found at i:26500802 original size:20 final size:20
Alignment explanation
Indices: 26500777--26500815 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
26500767 ATGTACTTAT
26500777 ATAAGATCTTATATAAGAAC
1 ATAAGATCTTATATAAGAAC
26500797 ATAAGATCTTATATAAGAA
1 ATAAGATCTTATATAAGAA
26500816 AACTCTACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.31
Consensus pattern (20 bp):
ATAAGATCTTATATAAGAAC
Found at i:26500880 original size:117 final size:118
Alignment explanation
Indices: 26500668--26500892 Score: 407
Period size: 117 Copynumber: 1.9 Consensus size: 118
26500658 TCTTCACTAA
*
26500668 TATATCAAGAACATAATATCTTATATAAGAAAACTCTACTATAACATTATTTCCTTACTTTTTCA
1 TATATCAAGAACATAAGATCTTATATAAGAAAACTCTACTATAACATTATTTCCTTACTTTTTCA
* *
26500733 ATAATATCAAACTTAAAAATATATTGAAATCTTGATGTACTTATATAAGATCT
66 ATAACATCAAACTTAAAAATATATTGAAATCTTAATGTACTTATATAAGATCT
26500786 TATAT-AAGAACATAAGATCTTATATAAGAAAACTCTACTATAACATTATTTCCTTACTTTTTCA
1 TATATCAAGAACATAAGATCTTATATAAGAAAACTCTACTATAACATTATTTCCTTACTTTTTCA
*
26500850 ATAACATCAAACTTAAAAATATATTGAAATCTTAATGTTCTTA
66 ATAACATCAAACTTAAAAATATATTGAAATCTTAATGTACTTA
26500893 CCTTGTGCTA
Statistics
Matches: 103, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
117 98 0.95
118 5 0.05
ACGTcount: A:0.43, C:0.14, G:0.05, T:0.39
Consensus pattern (118 bp):
TATATCAAGAACATAAGATCTTATATAAGAAAACTCTACTATAACATTATTTCCTTACTTTTTCA
ATAACATCAAACTTAAAAATATATTGAAATCTTAATGTACTTATATAAGATCT
Found at i:26501699 original size:23 final size:23
Alignment explanation
Indices: 26501672--26501721 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
26501662 ACCTACTTTC
* *
26501672 TTACTGTAGTAATTTTCGGGGTA
1 TTACTGTAGTAATTTTCGAGATA
26501695 TTACTGTAGTAATTTTCGAGATA
1 TTACTGTAGTAATTTTCGAGATA
26501718 TTAC
1 TTAC
26501722 ACAAACAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.26, C:0.10, G:0.20, T:0.44
Consensus pattern (23 bp):
TTACTGTAGTAATTTTCGAGATA
Found at i:26502997 original size:43 final size:42
Alignment explanation
Indices: 26502917--26502998 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 42
26502907 AATCATATAT
**
26502917 GATGCCAATGTCCCAACATGGTCTTACACAGTTTCACACTTC
1 GATGCCAATGTCCCAACATGGTCTTACACAGAATCACACTTC
*
26502959 GATGTCAATGTCCCAGACATGGTCTTACAC-GAAATCACAC
1 GATGCCAATGTCCCA-ACATGGTCTTACACAG-AATCACAC
26502999 CTCGGAAGTC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
42 15 0.43
43 20 0.57
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (42 bp):
GATGCCAATGTCCCAACATGGTCTTACACAGAATCACACTTC
Found at i:26503258 original size:31 final size:31
Alignment explanation
Indices: 26503130--26503257 Score: 175
Period size: 31 Copynumber: 4.1 Consensus size: 31
26503120 TTCAACAATA
*
26503130 TATATCCATATACGAATCAAATTCGGTAATG
1 TATATCCATATACAAATCAAATTCGGTAATG
* * *
26503161 TATATCTATATACAGATCAAATTCGGCAATG
1 TATATCCATATACAAATCAAATTCGGTAATG
* *
26503192 AATATCCATATACAAATCAAATTCGGTGATG
1 TATATCCATATACAAATCAAATTCGGTAATG
* **
26503223 TATAACCATATACAAATCAAATTTAGTAATG
1 TATATCCATATACAAATCAAATTCGGTAATG
26503254 TATA
1 TATA
26503258 AAACATATAC
Statistics
Matches: 83, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 83 1.00
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (31 bp):
TATATCCATATACAAATCAAATTCGGTAATG
Found at i:26505626 original size:40 final size:40
Alignment explanation
Indices: 26505561--26505908 Score: 351
Period size: 40 Copynumber: 8.8 Consensus size: 40
26505551 AATTATTGTA
* * * * *
26505561 TGAATGCACATGCGTACCCCTGTTTGTACTTCGGCACCCT
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * * * * *
26505601 TGATTACACATACATGCCTCAGTTTGCACTTCGGT-CTCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * *
26505640 TGAATGCACATACGCT-CCCCTATTTGTACTTCGATACCCC
1 TGAATGCACATAC-ATGCCCCTGTTTGTACTTCGGTACCCC
* * * * *
26505680 TGATTGCACATACATTCCCCTGTTTGTACTTTGATACCCG
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* *
26505720 TGAATGCACATACGTGCCCCTGTTTGTACTTTGGTACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * * * * * *
26505760 TGATTGCATATTCGTGCCTCTGTTTGTACTTTGGTACCCT
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * *
26505800 TGATTGCACATTCATGCCCCTGTTTATACTTCGGTACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* *
26505840 TGAATGCACATACATGCCCCTGTTTATACTTCGGTACCCT
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* *
26505880 TGAATGCACTTACGTG-CCCTGTTTGTACT
1 TGAATGCACATACATGCCCCTGTTTGTACT
26505909 CTGGTAACTC
Statistics
Matches: 258, Mismatches: 47, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
39 40 0.16
40 218 0.84
ACGTcount: A:0.19, C:0.30, G:0.17, T:0.35
Consensus pattern (40 bp):
TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
Found at i:26505758 original size:80 final size:80
Alignment explanation
Indices: 26505561--26505908 Score: 407
Period size: 80 Copynumber: 4.4 Consensus size: 80
26505551 AATTATTGTA
* * * * * * *
26505561 TGAATGCACATGCGTACCCCTGTTTGTACTTCGGCACCCTTGATTACACATACATGCCTCAGTTT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACATGCCCCTGTTT
*
26505626 GCACTTCGGT-CTCC-
66 GTACTTCGGTAC-CCT
* * *
26505640 TGAATGCACATACGCT-CCCCTATTTGTACTTCGATACCCCTGATTGCACATACATTCCCCTGTT
1 TGAATGCACATACG-TGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACATGCCCCTGTT
* * *
26505704 TGTACTTTGATACCCG
65 TGTACTTCGGTACCCT
* * * * *
26505720 TGAATGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTGATTGCATATTCGTGCCTCTGTTT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACATGCCCCTGTTT
*
26505785 GTACTTTGGTACCCT
66 GTACTTCGGTACCCT
* * * * *
26505800 TGATTGCACATTCATGCCCCTGTTTATACTTCGGTACCCCTGAATGCACATACATGCCCCTGTTT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACATGCCCCTGTTT
*
26505865 ATACTTCGGTACCCT
66 GTACTTCGGTACCCT
*
26505880 TGAATGCACTTACGTG-CCCTGTTTGTACT
1 TGAATGCACATACGTGCCCCTGTTTGTACT
26505909 CTGGTAACTC
Statistics
Matches: 226, Mismatches: 39, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
79 76 0.34
80 150 0.66
ACGTcount: A:0.19, C:0.30, G:0.17, T:0.35
Consensus pattern (80 bp):
TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACATGCCCCTGTTT
GTACTTCGGTACCCT
Found at i:26505761 original size:20 final size:20
Alignment explanation
Indices: 26505736--26505841 Score: 70
Period size: 20 Copynumber: 5.3 Consensus size: 20
26505726 CACATACGTG
26505736 CCCCTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTTGGTA
* * * *
26505756 CCCCTGATTGCA-TATTCGTG
1 CCCCTGTTTGTACT-TTGGTA
*
26505776 CCTCTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTTGGTA
* * * * ** *
26505796 CCCTTGATTGCACATTCATG
1 CCCCTGTTTGTACTTTGGTA
* *
26505816 CCCCTGTTTATACTTCGGTA
1 CCCCTGTTTGTACTTTGGTA
26505836 CCCCTG
1 CCCCTG
26505842 AATGCACATA
Statistics
Matches: 58, Mismatches: 26, Indels: 4
0.66 0.30 0.05
Matches are distributed among these distances:
19 1 0.02
20 56 0.97
21 1 0.02
ACGTcount: A:0.13, C:0.29, G:0.18, T:0.40
Consensus pattern (20 bp):
CCCCTGTTTGTACTTTGGTA
Found at i:26513444 original size:60 final size:60
Alignment explanation
Indices: 26513377--26513715 Score: 258
Period size: 60 Copynumber: 5.7 Consensus size: 60
26513367 TCATTGTCCA
** * * * *
26513377 ATGAAAAGGTTTGGCTTCAGCTATCAAAATATGGAAAGGGATAGCTTTGGCTATTGAATT
1 ATGAAAAGGGATGGCTTCAGCTATCAAAATATGAAAAGGGATGGCTTCGGCTATCGAATT
* * * * * * * *
26513437 ATGAAAAGGGATGG-TGACAACCATC-GAATCATTAACAGAGATGGCTTCAGCTATCGAATT
1 ATGAAAAGGGATGGCT-TCAGCTATCAAAAT-ATGAAAAGGGATGGCTTCGGCTATCGAATT
* * * *
26513497 ATGAAAAGGGATGGCTTCGGTTATCAAATTATGAAAAGGGACGGCTTCGGCTATCGAATT
1 ATGAAAAGGGATGGCTTCAGCTATCAAAATATGAAAAGGGATGGCTTCGGCTATCGAATT
* * * * * * **
26513557 ATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAAAGGGATGG-TGACGACCATC-AACA
1 ATGAAAAGGGATGGCTTCAGCTATCAAAATATGAAAAGGGATGGCT-TCGGCTATCGAATT
* * * * * *
26513616 ATGAAAAGGGATGG--TGATGACCATCGAATTATGAAAAGGGATGGCTTCGGCTATCAAAAT
1 ATGAAAAGGGATGGCTTCA-G-CTATCAAAATATGAAAAGGGATGGCTTCGGCTATCGAATT
* * ** *
26513676 ATGGAAAGGGATAGCTTCAGCTATTGAACTATGAAAAGGG
1 ATGAAAAGGGATGGCTTCAGCTATCAAAATATGAAAAGGG
26513716 GTGGTAACAA
Statistics
Matches: 218, Mismatches: 50, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
57 1 0.00
58 1 0.00
59 48 0.22
60 162 0.74
61 4 0.02
62 2 0.01
ACGTcount: A:0.36, C:0.13, G:0.27, T:0.25
Consensus pattern (60 bp):
ATGAAAAGGGATGGCTTCAGCTATCAAAATATGAAAAGGGATGGCTTCGGCTATCGAATT
Found at i:26513493 original size:30 final size:30
Alignment explanation
Indices: 26513476--26513715 Score: 245
Period size: 30 Copynumber: 8.0 Consensus size: 30
26513466 CATTAACAGA
*
26513476 GATGGCTTCAGCTATCGAATTATGAAAAGG
1 GATGGCTTCGGCTATCGAATTATGAAAAGG
* *
26513506 GATGGCTTCGGTTATCAAATTATGAAAAGG
1 GATGGCTTCGGCTATCGAATTATGAAAAGG
*
26513536 GACGGCTTCGGCTATCGAATTATGAAAAGG
1 GATGGCTTCGGCTATCGAATTATGAAAAGG
* *
26513566 GATAGCTTCGGCTATCAAATTATGAAAAGG
1 GATGGCTTCGGCTATCGAATTATGAAAAGG
* * * **
26513596 GATGG-TGACGACCATC-AACAATGAAAAGG
1 GATGGCT-TCGGCTATCGAATTATGAAAAGG
* *
26513625 GATGG-TGAT-GACCATCGAATTATGAAAAGG
1 GATGGCT--TCGGCTATCGAATTATGAAAAGG
* * *
26513655 GATGGCTTCGGCTATCAAAATATGGAAAGG
1 GATGGCTTCGGCTATCGAATTATGAAAAGG
* * * *
26513685 GATAGCTTCAGCTATTGAACTATGAAAAGG
1 GATGGCTTCGGCTATCGAATTATGAAAAGG
26513715 G
1 G
26513716 GTGGTAACAA
Statistics
Matches: 175, Mismatches: 30, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
29 26 0.15
30 148 0.85
31 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (30 bp):
GATGGCTTCGGCTATCGAATTATGAAAAGG
Found at i:26513553 original size:90 final size:90
Alignment explanation
Indices: 26513388--26513715 Score: 286
Period size: 90 Copynumber: 3.7 Consensus size: 90
26513378 TGAAAAGGTT
* * * * ** *
26513388 TGGCTTCAGCTATCAAAATATGGAAAGGGATAGCTTTGGCTATTGAATTATGAAAAGGGATGGTG
1 TGGCTTCAGCTATCAAATTATGAAAAGGGATGGCTTCGGCTATCAAATTATGAAAAGGGACGGTG
* *
26513453 ACAACCATCGAATCATTAACAGAGA
66 ACAACCATCGAATCATGAAAAGAGA
* *
26513478 TGGCTTCAGCTATCGAATTATGAAAAGGGATGGCTTCGGTTATCAAATTATGAAAAGGGACGGCT
1 TGGCTTCAGCTATCAAATTATGAAAAGGGATGGCTTCGGCTATCAAATTATGAAAAGGGACGG-T
* ** * * *
26513543 -TCGGCTATCGAATTATGAAAAGGGA
65 GACAACCATCGAATCATGAAAAGAGA
* * * * * *
26513568 TAGCTTCGGCTATCAAATTATGAAAAGGGATGG-TGACGACCATCAACA--ATGAAAAGGGATGG
1 TGGCTTCAGCTATCAAATTATGAAAAGGGATGGCT-TCGGCTATCAA-ATTATGAAAAGGGACGG
** * *
26513630 TGATGACCATCGAATTATGAAAAGGGA
64 TGACAACCATCGAATCATGAAAAGAGA
* * * * * ** *
26513657 TGGCTTCGGCTATCAAAATATGGAAAGGGATAGCTTCAGCTATTGAACTATGAAAAGGG
1 TGGCTTCAGCTATCAAATTATGAAAAGGGATGGCTTCGGCTATCAAATTATGAAAAGGG
26513716 GTGGTAACAA
Statistics
Matches: 192, Mismatches: 39, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
88 2 0.01
89 69 0.36
90 119 0.62
91 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.25
Consensus pattern (90 bp):
TGGCTTCAGCTATCAAATTATGAAAAGGGATGGCTTCGGCTATCAAATTATGAAAAGGGACGGTG
ACAACCATCGAATCATGAAAAGAGA
Found at i:26513628 original size:29 final size:30
Alignment explanation
Indices: 26513587--26513659 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 30
26513577 CTATCAAATT
26513587 ATGAAAAGGGATGGTGACGACCATC-AACA
1 ATGAAAAGGGATGGTGACGACCATCGAACA
* **
26513616 ATGAAAAGGGATGGTGATGACCATCGAATT
1 ATGAAAAGGGATGGTGACGACCATCGAACA
26513646 ATGAAAAGGGATGG
1 ATGAAAAGGGATGG
26513660 CTTCGGCTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 24 0.60
30 16 0.40
ACGTcount: A:0.40, C:0.11, G:0.32, T:0.18
Consensus pattern (30 bp):
ATGAAAAGGGATGGTGACGACCATCGAACA
Found at i:26515908 original size:41 final size:42
Alignment explanation
Indices: 26515741--26515926 Score: 202
Period size: 41 Copynumber: 4.5 Consensus size: 42
26515731 TGTAAATAGG
*
26515741 GGCACATATGTGCAATTCAGGGGTA-CTAAAGTACAAA-ATG-
1 GGCACATATGTGCAATTCAGGGGTATCTGAAGTACAAACA-GA
* * * *
26515781 GGAACATATGTGCAATTCAAGGGTATC-GAAGTACAAATAGG
1 GGCACATATGTGCAATTCAGGGGTATCTGAAGTACAAACAGA
* *
26515822 GGCACATTTGTGCAATTCAGGGGTTTCTGAAGTACAAACAGA
1 GGCACATATGTGCAATTCAGGGGTATCTGAAGTACAAACAGA
** *
26515864 GGCATGTATGTGCAATTCAGGGGTATC-GAAGTACAAACACA
1 GGCACATATGTGCAATTCAGGGGTATCTGAAGTACAAACAGA
** * *
26515905 GGCATGTATGTGGAATTTAGGG
1 GGCACATATGTGCAATTCAGGG
26515927 AATAATTGAG
Statistics
Matches: 126, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
40 33 0.26
41 58 0.46
42 35 0.28
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (42 bp):
GGCACATATGTGCAATTCAGGGGTATCTGAAGTACAAACAGA
Found at i:26517528 original size:107 final size:109
Alignment explanation
Indices: 26517321--26517538 Score: 350
Period size: 107 Copynumber: 2.0 Consensus size: 109
26517311 GGCTCACACT
* **
26517321 ATCCGTCTAAACTGGTTGTTTTTGTATCTCTTAGGGTAGTGGCGTGTATATATATATATTTATAT
1 ATCCGTCTAAACTGGTTGTTTTTGTATCGCTTAAAGTAGTGGCGTGTATATATATATATTTATAT
* * *
26517386 ATATGAATTTGTGGTTGAAATTCTTAGGATGTTATGTAATGGTG
66 AGATGAATTTGTAGTTGAAATGCTTAGGATGTTATGTAATGGTG
*
26517430 ATCCGTCTAAACTGGTTGTTTTTGTATCGCTTAAAGTAGTGGC-T-TGTATATATATATTTATAT
1 ATCCGTCTAAACTGGTTGTTTTTGTATCGCTTAAAGTAGTGGCGTGTATATATATATATTTATAT
*
26517493 AGATGAATTTGTAGTTGAAATGCTTAGGGTGTTATGTAATGGTG
66 AGATGAATTTGTAGTTGAAATGCTTAGGATGTTATGTAATGGTG
26517537 AT
1 AT
26517539 TTGGATGTTT
Statistics
Matches: 101, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
107 60 0.59
108 1 0.01
109 40 0.40
ACGTcount: A:0.26, C:0.07, G:0.23, T:0.44
Consensus pattern (109 bp):
ATCCGTCTAAACTGGTTGTTTTTGTATCGCTTAAAGTAGTGGCGTGTATATATATATATTTATAT
AGATGAATTTGTAGTTGAAATGCTTAGGATGTTATGTAATGGTG
Found at i:26523622 original size:50 final size:50
Alignment explanation
Indices: 26523511--26523743 Score: 225
Period size: 50 Copynumber: 4.5 Consensus size: 50
26523501 AAAGAGATCT
* * * * *
26523511 CATGTAAGACCATGTCTGGGACATGGCATTGACATCATTGAGATTATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCGTGGGCA-C--CGAG---ATGAAAGGTCC
* * * * *
26523567 TATGTAATACCCTGTCTGGGACATGGTGTGGGAACCGAGATGAAAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCGTGGGCACCGAGATGAAAGGTCC
* *
26523617 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCGTGGGCACCGAGATGAAAGGTCC
** * * *
26523667 CCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAA-CTCC
1 CATGTAAGACCATGTCTGGGACATGGCGTGGGCACCGAGATGA-AAGGTCC
* *
26523717 CATGTAAGACCATATCTGGGATATGGC
1 CATGTAAGACCATGTCTGGGACATGGC
26523744 ATTGGAATTA
Statistics
Matches: 148, Mismatches: 28, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
50 117 0.79
51 1 0.01
53 3 0.02
55 1 0.01
56 26 0.18
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCGTGGGCACCGAGATGAAAGGTCC
Found at i:26523704 original size:100 final size:103
Alignment explanation
Indices: 26523511--26523748 Score: 277
Period size: 100 Copynumber: 2.3 Consensus size: 103
26523501 AAAGAGATCT
* * * * *
26523511 CATGTAAGACCATGTCTGGGACATGGCATTGACATCATTGAGATTATGAGAGGTCCTATGTAATA
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCA-CGAG--TATGAGAGGTCCCACGTAAGA
* ** *
26523576 CCCTGTCTGGGACATGGTGTGGGAACCGAGATGA-AAGGTCC
63 CCATGTCTGGGACATGGCATGGGAACCGAGATGAGAA-CTCC
* *
26523617 CATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C-CGAG-ATGAGAGGTCCCCCGTAAGACCA
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCACGAGTATGAGAGGTCCCACGTAAGACCA
* *
26523679 TGTCTGGGACATGGCATGGGCACCGATATGAGAACTCC
66 TGTCTGGGACATGGCATGGGAACCGAGATGAGAACTCC
* *
26523717 CATGTAAGACCATATCTGGGATATGGCATTGG
1 CATGTAAGACCATGTCTGGGACATGGCATTGG
26523749 AATTACAGAA
Statistics
Matches: 115, Mismatches: 16, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
100 77 0.67
101 2 0.02
103 3 0.03
105 1 0.01
106 32 0.28
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (103 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCATCACGAGTATGAGAGGTCCCACGTAAGACCA
TGTCTGGGACATGGCATGGGAACCGAGATGAGAACTCC
Found at i:26523744 original size:50 final size:50
Alignment explanation
Indices: 26523511--26523792 Score: 219
Period size: 50 Copynumber: 5.5 Consensus size: 50
26523501 AAAGAGATCT
* * * **
26523511 CATGTAAGACCATGTCTGGGACATGGCATTGACATCATTGAGATTATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATGGGCA-C--CGAG---ATGAGAACTCC
* * * ** * *
26523567 TATGTAATACCCTGTCTGGGACATGGTGTGGGAACCGAGATGA-AAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAA-CTCC
* * **
26523617 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCC
** *
26523667 CCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCC
1 CATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCC
* * * *** * *
26523717 CATGTAAGACCATATCTGGGATATGGCATTGG-AATTACA-GAAAACATCC
1 CATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAAC-TCC
*
26523766 CATGTAAGACCATTTCTGGGACATGGC
1 CATGTAAGACCATGTCTGGGACATGGC
26523793 TTTCGCATGT
Statistics
Matches: 187, Mismatches: 36, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
48 5 0.03
49 32 0.17
50 119 0.64
51 1 0.01
53 3 0.02
55 1 0.01
56 26 0.14
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCC
Found at i:26531508 original size:43 final size:41
Alignment explanation
Indices: 26531453--26531596 Score: 146
Period size: 43 Copynumber: 3.4 Consensus size: 41
26531443 ATGCCATATT
* *
26531453 CCAGATATGGTCTTACATGTCAATACATTTCGATGCCACTGTC
1 CCAGACATGGTCTTACATGT-AAT-CATTTCGATGCCAATGTC
* * * *
26531496 CCAGACAGGGTCTTATATG-ACTCATATACGATGCCAATGTC
1 CCAGACATGGTCTTACATGTAATCAT-TTCGATGCCAATGTC
* * *
26531537 CCAGACATGGTCTTACACGTTATCTCACTTCGATGCCAATGTC
1 CCAGACATGGTCTTACATG-TA-ATCATTTCGATGCCAATGTC
*
26531580 TCAGACATGGTCTTACA
1 CCAGACATGGTCTTACA
26531597 CGAAATCACA
Statistics
Matches: 85, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
40 3 0.04
41 31 0.36
43 47 0.55
44 4 0.05
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (41 bp):
CCAGACATGGTCTTACATGTAATCATTTCGATGCCAATGTC
Found at i:26539516 original size:16 final size:16
Alignment explanation
Indices: 26539489--26539531 Score: 61
Period size: 15 Copynumber: 2.7 Consensus size: 16
26539479 TTTGTTGAAA
26539489 AATTTTAATTTTTATGG
1 AATTTT-ATTTTTATGG
*
26539506 AA-TTTATTTTTATGT
1 AATTTTATTTTTATGG
26539521 AATTTTATTTT
1 AATTTTATTTT
26539532 ATTTTTGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 11 0.46
16 11 0.46
17 2 0.08
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (16 bp):
AATTTTATTTTTATGG
Found at i:26541366 original size:15 final size:15
Alignment explanation
Indices: 26541342--26541378 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
26541332 GAACAAAATT
26541342 CTGAGAAAGAAGCTA
1 CTGAGAAAGAAGCTA
* *
26541357 CTGAGGAAGAATCTA
1 CTGAGAAAGAAGCTA
26541372 CTGAGAA
1 CTGAGAA
26541379 CATTGTCAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.43, C:0.14, G:0.27, T:0.16
Consensus pattern (15 bp):
CTGAGAAAGAAGCTA
Found at i:26558761 original size:22 final size:22
Alignment explanation
Indices: 26558689--26558768 Score: 79
Period size: 22 Copynumber: 3.5 Consensus size: 22
26558679 GGACCTTAGC
26558689 GTGCTCTCTGATTATTAGCACATTA
1 GTGCTCTCTG--TA-TAGCACATTA
* * * **
26558714 GTGCTCTCCGTTTAACACATCC
1 GTGCTCTCTGTATAGCACATTA
*
26558736 GTGCTCTCTGTATAGCACTTTA
1 GTGCTCTCTGTATAGCACATTA
26558758 GTGCTCTCTGT
1 GTGCTCTCTGT
26558769 TCAATAGTGC
Statistics
Matches: 44, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
22 34 0.77
23 1 0.02
25 9 0.20
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.39
Consensus pattern (22 bp):
GTGCTCTCTGTATAGCACATTA
Found at i:26561131 original size:40 final size:40
Alignment explanation
Indices: 26561069--26561308 Score: 270
Period size: 40 Copynumber: 6.0 Consensus size: 40
26561059 ATTGTATGAA
*
26561069 TGCACATACGTGCCCC-AGTTTGTACTTCGGTACCCCTGAT
1 TGCACATACGTGCCCCTA-TTTGTACTTCGATACCCCTGAT
* * *
26561109 TGCACATACGTGCTCCTATTTGTACTTCGATACCCCTAAA
1 TGCACATACGTGCCCCTATTTGTACTTCGATACCCCTGAT
* * * * *
26561149 TGCACATTCATGCCCCTATTTGTATTTCGGTACCGCTGAT
1 TGCACATACGTGCCCCTATTTGTACTTCGATACCCCTGAT
* *
26561189 TGCACATATGTGCCCCTATTTGTACTTCAATACCCCCTGAAT
1 TGCACATACGTGCCCCTATTTGTACTTCGATA-CCCCTG-AT
*
26561231 T-CACATACGTGCCCCTTTTTGTACTTC-AGTACCCCTGAT
1 TGCACATACGTGCCCCTATTTGTACTTCGA-TACCCCTGAT
** ** *
26561270 TGCACATTTGTGCCTATGTTTGTACTTCGATACCCCTGA
1 TGCACATACGTGCCCCTATTTGTACTTCGATACCCCTGA
26561309 ATGTACTCAA
Statistics
Matches: 168, Mismatches: 26, Indels: 12
0.82 0.13 0.06
Matches are distributed among these distances:
39 3 0.02
40 129 0.77
41 33 0.20
42 3 0.02
ACGTcount: A:0.20, C:0.30, G:0.15, T:0.35
Consensus pattern (40 bp):
TGCACATACGTGCCCCTATTTGTACTTCGATACCCCTGAT
Found at i:26561207 original size:80 final size:80
Alignment explanation
Indices: 26561065--26561311 Score: 334
Period size: 80 Copynumber: 3.1 Consensus size: 80
26561055 AATTATTGTA
* *
26561065 TGAATGCACATACGTGCCCC-AGTTTGTACTTCGGTACCCCTGATTGCACATACGTGCTCCTATT
1 TGAATGCACATACGTGCCCCTA-TTTGTACTTCGGTACCCCTGATTGCACATATGTGCCCCTATT
26561129 TGTACTTCGATACCCC
65 TGTACTTCGATACCCC
* * * * *
26561145 TAAATGCACATTCATGCCCCTATTTGTATTTCGGTACCGCTGATTGCACATATGTGCCCCTATTT
1 TGAATGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCACATATGTGCCCCTATTT
*
26561210 GTACTTCAATACCCCC
66 GTACTTCGATA-CCCC
* * * * ** *
26561226 TGAATTCACATACGTGCCCCTTTTTGTACTTCAGTACCCCTGATTGCACATTTGTGCCTATGTTT
1 TGAATGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCACATATGTGCCCCTATTT
26561291 GTACTTCGATACCCC
66 GTACTTCGATACCCC
26561306 TGAATG
1 TGAATG
26561312 TACTCAATAC
Statistics
Matches: 143, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
80 75 0.52
81 68 0.48
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (80 bp):
TGAATGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCACATATGTGCCCCTATTT
GTACTTCGATACCCC
Found at i:26561315 original size:20 final size:20
Alignment explanation
Indices: 26561290--26561335 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
26561280 TGCCTATGTT
*
26561290 TGTACTTCGATACCCCTGAA
1 TGTACTTCAATACCCCTGAA
26561310 TGTAC-TCAATACCCCTGAA
1 TGTACTTCAATACCCCTGAA
*
26561329 TGCACTT
1 TGTACTT
26561336 ACGTGCCCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.30
Consensus pattern (20 bp):
TGTACTTCAATACCCCTGAA
Found at i:26561367 original size:58 final size:60
Alignment explanation
Indices: 26561250--26561368 Score: 145
Period size: 58 Copynumber: 2.0 Consensus size: 60
26561240 TGCCCCTTTT
* * * * *
26561250 TGTACTTCAGTACCCCTGATTGCACATTTGTGCCTATGTTTGTACTTCGATACCCCTGAA
1 TGTACTTCAATACCCCTGAATGCACATTCGTGCCTATGTTTATACTTCGATAACCCTGAA
* *
26561310 TGTAC-TCAATACCCCTGAATGCAC-TTACGTGCC-CTGTTTATACTTCGATAACTCTGAA
1 TGTACTTCAATACCCCTGAATGCACATT-CGTGCCTATGTTTATACTTCGATAACCCTGAA
26561368 T
1 T
26561369 TATATAGTAT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
58 24 0.47
59 22 0.43
60 5 0.10
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (60 bp):
TGTACTTCAATACCCCTGAATGCACATTCGTGCCTATGTTTATACTTCGATAACCCTGAA
Found at i:26570515 original size:9 final size:9
Alignment explanation
Indices: 26570486--26570515 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
26570476 GAAATTTTAC
26570486 AATTCGAAT
1 AATTCGAAT
*
26570495 AACTCGAAT
1 AATTCGAAT
26570504 AATTCGAAT
1 AATTCGAAT
26570513 AAT
1 AAT
26570516 AGATTGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:26570617 original size:20 final size:20
Alignment explanation
Indices: 26570594--26570636 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
26570584 AAAAATTAAA
26570594 AAAAAATCAAAATAATTTTT
1 AAAAAATCAAAATAATTTTT
** *
26570614 AAAATTTTAAAATAATTTTT
1 AAAAAATCAAAATAATTTTT
26570634 AAA
1 AAA
26570637 GTTCAAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
AAAAAATCAAAATAATTTTT
Found at i:26574181 original size:31 final size:31
Alignment explanation
Indices: 26574145--26574203 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
26574135 AGGCATAAGC
*
26574145 TAAATGTTGAGAACTTATTTGGGTACAATTT
1 TAAATGTTGAGAACTTATTTGAGTACAATTT
26574176 TAAATGTTGAGAACTTATTTGAGTACAA
1 TAAATGTTGAGAACTTATTTGAGTACAA
26574204 GATAAAAGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.36, C:0.07, G:0.19, T:0.39
Consensus pattern (31 bp):
TAAATGTTGAGAACTTATTTGAGTACAATTT
Found at i:26579657 original size:23 final size:25
Alignment explanation
Indices: 26579626--26579696 Score: 92
Period size: 23 Copynumber: 2.9 Consensus size: 25
26579616 TATTTAAATA
26579626 TAAAATATTTTATATTAAATTA-AT
1 TAAAATATTTTATATTAAATTATAT
* *
26579650 T-TAATATTTTATAATAAATTATAT
1 TAAAATATTTTATATTAAATTATAT
* *
26579674 TAAAATATTTTATTTTATATTAT
1 TAAAATATTTTATATTAAATTAT
26579697 TTGAAATTTG
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
23 18 0.46
24 4 0.10
25 17 0.44
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (25 bp):
TAAAATATTTTATATTAAATTATAT
Found at i:26579697 original size:23 final size:23
Alignment explanation
Indices: 26579619--26579697 Score: 74
Period size: 23 Copynumber: 3.4 Consensus size: 23
26579609 CTAATAATAT
26579619 TTAAA-TA-TAAAATATTTTATA
1 TTAAATTATTAAAATATTTTATA
*
26579640 TTAAATTAATT-TAATATTTTATA
1 TTAAATT-ATTAAAATATTTTATA
* *
26579663 ATAAATTATATTAAAATATTTTATT
1 TTAAA-T-TATTAAAATATTTTATA
*
26579688 TTATATTATT
1 TTAAATTATT
26579698 TGAAATTTGG
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
21 5 0.11
22 1 0.02
23 20 0.43
24 6 0.13
25 14 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (23 bp):
TTAAATTATTAAAATATTTTATA
Found at i:26579773 original size:116 final size:123
Alignment explanation
Indices: 26579630--26579864 Score: 324
Period size: 126 Copynumber: 1.9 Consensus size: 123
26579620 TAAATATAAA
*
26579630 ATATTTTATATTAAATTAATTTAATATTTTATAATAA-A-T-T-ATA-TTAAAATATTTTA-TTT
1 ATATTTTATATCAAATTAATTTAATATTTTATAATAATATTATAATATTTAAAATATTTTATTTT
* *
26579689 TATATTATT-TGAAATTTGGAAATAATATTTTGTATTAAATTATATTAAAATATTTAAC
66 TATATT-TTCTAAAATTTGGAAATAATATTTTATATTAAATTATATTAAAATATTTAAC
* *
26579747 ATATTTTATA-CAAATTAATTTTATATTTTATATTAAGTTATTATAAAATATTTAAAATATTTTA
1 ATATTTTATATCAAATTAATTTAATATTTTATAATAA--TATTAT--AATATTTAAAATATTTTA
26579811 TTTTTATATTTTCTAAAATTTGGAAATAATATTTTATATTAAATTATATTAAAA
62 TTTTTATATTTTCTAAAATTTGGAAATAATATTTTATATTAAATTATATTAAAA
26579865 GTTTTTTATT
Statistics
Matches: 102, Mismatches: 5, Indels: 13
0.85 0.04 0.11
Matches are distributed among these distances:
116 23 0.23
117 10 0.10
119 1 0.01
120 1 0.01
121 1 0.01
124 3 0.03
125 15 0.15
126 48 0.47
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.52
Consensus pattern (123 bp):
ATATTTTATATCAAATTAATTTAATATTTTATAATAATATTATAATATTTAAAATATTTTATTTT
TATATTTTCTAAAATTTGGAAATAATATTTTATATTAAATTATATTAAAATATTTAAC
Found at i:26587141 original size:11 final size:11
Alignment explanation
Indices: 26587121--26587154 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
26587111 GCATCCAAAT
26587121 CAAG-CATAAA
1 CAAGCCATAAA
26587131 CAAGCCATAAA
1 CAAGCCATAAA
26587142 CAAGCCATAAA
1 CAAGCCATAAA
26587153 CA
1 CA
26587155 TATGGTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 4 0.17
11 19 0.83
ACGTcount: A:0.56, C:0.26, G:0.09, T:0.09
Consensus pattern (11 bp):
CAAGCCATAAA
Found at i:26588254 original size:25 final size:25
Alignment explanation
Indices: 26588158--26588250 Score: 105
Period size: 25 Copynumber: 3.7 Consensus size: 25
26588148 GCTGTGAATT
* *
26588158 GGTATACTCACTCTAGTTATAGATC
1 GGTATACTCACACGAGTTATAGATC
* *
26588183 GGTATACTCTCACGAGTTATAAATC
1 GGTATACTCACACGAGTTATAGATC
* * *
26588208 AGTATCCTCACACGAGTTGTAGATC
1 GGTATACTCACACGAGTTATAGATC
* *
26588233 GGTATGCTCCCACGAGTT
1 GGTATACTCACACGAGTT
26588251 GTAGGTCGAA
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (25 bp):
GGTATACTCACACGAGTTATAGATC
Found at i:26595565 original size:25 final size:25
Alignment explanation
Indices: 26595512--26595626 Score: 104
Period size: 25 Copynumber: 4.6 Consensus size: 25
26595502 TCCTGTACAT
* * * * *
26595512 GTATGCTCATACGATCTGTCAACCA
1 GTATGCTCACACGAGCTGTAAATCG
* ** * *
26595537 GTATGCTCGCTTGAGCTATAGATCG
1 GTATGCTCACACGAGCTGTAAATCG
* *
26595562 GTATGCTCTCACGAGCTGTAAATTG
1 GTATGCTCACACGAGCTGTAAATCG
*
26595587 GTATGCTCACACGAGCTGTATATCG
1 GTATGCTCACACGAGCTGTAAATCG
*
26595612 GTATGCTCTCACGAG
1 GTATGCTCACACGAG
26595627 TTGTGGGTCA
Statistics
Matches: 70, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 70 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTAAATCG
Found at i:26620594 original size:40 final size:38
Alignment explanation
Indices: 26620491--26620685 Score: 124
Period size: 38 Copynumber: 5.0 Consensus size: 38
26620481 TACAATGAAT
* * * * *
26620491 TGACACAAAGACTACTAGGCTCAAAGCCTGATATAACAC
1 TGACACAAAGCCTGCTAGGCACAAAGCATGA-ATATCAC
* * * *
26620530 ATCGGCACGAAGCCTGCTAAGCACAAAGCTTGATATAATACAC
1 -T-GACACAAAGCCTGCTAGGCACAAAGCATGA-AT-AT-CAC
* *
26620573 TGACA-AAAGCCTGGTAGGCACAGAGCATGAATATCAC
1 TGACACAAAGCCTGCTAGGCACAAAGCATGAATATCAC
* * ** **
26620610 TGGCACAAAGCCTGCTAGGGACGGAGCCCGAATATCA-
1 TGACACAAAGCCTGCTAGGCACAAAGCATGAATATCAC
** **
26620647 TCGACACAAAGCCTGCTAAACACAAAGCCCGAATATCAC
1 T-GACACAAAGCCTGCTAGGCACAAAGCATGAATATCAC
26620686 CACTTTTCTA
Statistics
Matches: 123, Mismatches: 26, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
37 8 0.07
38 58 0.47
39 2 0.02
40 21 0.17
41 29 0.24
42 2 0.02
43 3 0.02
ACGTcount: A:0.37, C:0.27, G:0.20, T:0.16
Consensus pattern (38 bp):
TGACACAAAGCCTGCTAGGCACAAAGCATGAATATCAC
Found at i:26622692 original size:40 final size:41
Alignment explanation
Indices: 26622631--26622733 Score: 154
Period size: 40 Copynumber: 2.5 Consensus size: 41
26622621 AGAAAAATGA
* *
26622631 TGAATTGCACATATGTTCCCCTATTTGTACTTCGATACCC-
1 TGAATTGCACATACGTGCCCCTATTTGTACTTCGATACCCT
*
26622671 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCT
1 TGAATTGCACATACGTGCCCCTATTTGTACTTCGATACCCT
* *
26622712 TGAATTACACACACGTGCCCCT
1 TGAATTGCACATACGTGCCCCT
26622734 GATTAGACTT
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
40 37 0.65
41 20 0.35
ACGTcount: A:0.22, C:0.30, G:0.15, T:0.33
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTATTTGTACTTCGATACCCT
Found at i:26622744 original size:41 final size:40
Alignment explanation
Indices: 26622648--26622744 Score: 124
Period size: 41 Copynumber: 2.4 Consensus size: 40
26622638 CACATATGTT
* * * *
26622648 CCCCTATTTGTACTTCGATACCCTGAATTGCACATACGTG
1 CCCCTGTTAGTACTTCGATACCCTGAATTACACACACGTG
*
26622688 CCCCTGTTTGTACTTCGATACCCTTGAATTACACACACGTG
1 CCCCTGTTAGTACTTCGATACCC-TGAATTACACACACGTG
26622729 CCCCTGATTAG-ACTTC
1 CCCCTG-TTAGTACTTC
26622745 AAAAATTCTG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
40 22 0.43
41 26 0.51
42 3 0.06
ACGTcount: A:0.22, C:0.32, G:0.14, T:0.32
Consensus pattern (40 bp):
CCCCTGTTAGTACTTCGATACCCTGAATTACACACACGTG
Found at i:26631446 original size:27 final size:27
Alignment explanation
Indices: 26631410--26631595 Score: 199
Period size: 27 Copynumber: 7.1 Consensus size: 27
26631400 AGAGGTCAAT
*
26631410 AAATGACCAAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCCTATAGGGTA
*
26631437 AAATGACC-AAA-A----T-TAAGGTA
1 AAATGACCGAAATACCCCTATAGGGTA
* * *
26631457 AAATGATCGAGATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCTATAGGGTA
* * *
26631484 AACTGA-CTAAGATACCCCCATAGGGTA
1 AAATGACCGAA-ATACCCCTATAGGGTA
*
26631511 AAATGACTGAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCCTATAGGGTA
*
26631538 AGATGACCGAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCCTATAGGGTA
* *
26631565 AGATGACCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCTATAGGGTA
26631592 AAAT
1 AAAT
26631596 AACTGTTATA
Statistics
Matches: 134, Mismatches: 16, Indels: 18
0.80 0.10 0.11
Matches are distributed among these distances:
20 13 0.10
21 3 0.02
22 1 0.01
25 1 0.01
26 5 0.04
27 109 0.81
28 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.19
Consensus pattern (27 bp):
AAATGACCGAAATACCCCTATAGGGTA
Found at i:26631755 original size:26 final size:26
Alignment explanation
Indices: 26631725--26631779 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
26631715 TGGAGGACGT
* * *
26631725 ATACTGTTACTGGCAGCTTTGTTGCG
1 ATACTGTTACTGCCAACTTTGCTGCG
26631751 ATACTGTTACTGCCAACTTTGCTGCG
1 ATACTGTTACTGCCAACTTTGCTGCG
26631777 ATA
1 ATA
26631780 TTGGTGTGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (26 bp):
ATACTGTTACTGCCAACTTTGCTGCG
Found at i:26631926 original size:28 final size:28
Alignment explanation
Indices: 26631882--26631940 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
26631872 ATTGCACTGT
26631882 ACTATTACTATACTGGGCTAAGGCCCAC
1 ACTATTACTATACTGGGCTAAGGCCCAC
* *
26631910 ACTATTACTGTATTGGGCTAAGGCCCAC
1 ACTATTACTATACTGGGCTAAGGCCCAC
26631938 ACT
1 ACT
26631941 GTATAATTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (28 bp):
ACTATTACTATACTGGGCTAAGGCCCAC
Found at i:26638619 original size:12 final size:12
Alignment explanation
Indices: 26638589--26638627 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
26638579 ACTCGCTTCT
* *
26638589 TTACTTATTCAC
1 TTACTTGTTTAC
26638601 TTACTTGTTTAC
1 TTACTTGTTTAC
*
26638613 TTACTTGCTTAC
1 TTACTTGTTTAC
26638625 TTA
1 TTA
26638628 AATAACTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.54
Consensus pattern (12 bp):
TTACTTGTTTAC
Found at i:26639402 original size:12 final size:12
Alignment explanation
Indices: 26639372--26639410 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
26639362 ACTCGCTTCT
* *
26639372 TTACTTATTCAC
1 TTACTTGTTTAC
26639384 TTACTTGTTTAC
1 TTACTTGTTTAC
*
26639396 TTACTTGCTTAC
1 TTACTTGTTTAC
26639408 TTA
1 TTA
26639411 AATAACTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.54
Consensus pattern (12 bp):
TTACTTGTTTAC
Found at i:26639734 original size:50 final size:50
Alignment explanation
Indices: 26639659--26639851 Score: 206
Period size: 50 Copynumber: 3.7 Consensus size: 50
26639649 TTTTCTGTAC
* * **
26639659 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGA
* * ** * *
26639709 TGCCCATGCCATGTCCAAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGA
*
26639759 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GA
** *
26639815 TGCCAATTTCATGTCCCAAACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
26639852 TTTCATTCCT
Statistics
Matches: 116, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
50 80 0.69
53 2 0.02
56 34 0.29
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGA
Found at i:26646858 original size:19 final size:18
Alignment explanation
Indices: 26646836--26646876 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
26646826 CTTTTCAAAA
26646836 TTTTTATTTTTAT-GATAT
1 TTTTTATTTTTATAG-TAT
26646854 TTTTTACTTTTTATAGT-T
1 TTTTTA-TTTTTATAGTAT
26646872 TTTTT
1 TTTTT
26646877 TTATAAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
18 12 0.57
19 8 0.38
20 1 0.05
ACGTcount: A:0.17, C:0.02, G:0.05, T:0.76
Consensus pattern (18 bp):
TTTTTATTTTTATAGTAT
Found at i:26648843 original size:2 final size:2
Alignment explanation
Indices: 26648836--26648861 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26648826 AGCATATAAC
26648836 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
26648862 TTACCTTGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26654357 original size:11 final size:11
Alignment explanation
Indices: 26654341--26654366 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26654331 TACAAAGTTT
26654341 ATTATAATAAA
1 ATTATAATAAA
26654352 ATTATAATAAA
1 ATTATAATAAA
26654363 ATTA
1 ATTA
26654367 ATTATGTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
ATTATAATAAA
Found at i:26654468 original size:14 final size:14
Alignment explanation
Indices: 26654449--26654478 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26654439 TTCACTGTTA
*
26654449 TGTCTTTTATATTT
1 TGTCTTTCATATTT
26654463 TGTCTTTCATATTT
1 TGTCTTTCATATTT
26654477 TG
1 TG
26654479 CATGCATAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.10, G:0.10, T:0.67
Consensus pattern (14 bp):
TGTCTTTCATATTT
Found at i:26658650 original size:29 final size:29
Alignment explanation
Indices: 26658617--26658693 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
26658607 ATAGGCGATC
*
26658617 ATCGAATATGAAAAGGGATAGCTTCAGTT
1 ATCGAATATGAAAAGGGATAGCTTCAGCT
* *
26658646 ATCG-ATCATGAAAAGGGATAGTTTCGGCT
1 ATCGAAT-ATGAAAAGGGATAGCTTCAGCT
*
26658675 ATCGATTATGAAAAGGGAT
1 ATCGAATATGAAAAGGGAT
26658694 GGTGACGACC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 2 0.05
29 39 0.93
30 1 0.02
ACGTcount: A:0.36, C:0.10, G:0.26, T:0.27
Consensus pattern (29 bp):
ATCGAATATGAAAAGGGATAGCTTCAGCT
Found at i:26658747 original size:30 final size:29
Alignment explanation
Indices: 26658646--26658852 Score: 207
Period size: 29 Copynumber: 7.1 Consensus size: 29
26658636 AGCTTCAGTT
* * ** * *
26658646 ATCGATCATGAAAAGGGATAGTTTCGGCT
1 ATCGATTATGAAAAGGGATGGTGACGACC
26658675 ATCGATTATGAAAAGGGATGGTGACGACC
1 ATCGATTATGAAAAGGGATGGTGACGACC
* * *
26658704 ATCAAGTATGAAAAGGGATGGTGATGACC
1 ATCGATTATGAAAAGGGATGGTGACGACC
**
26658733 ATCGATTAATGAAAAGGGATGGTTTCGACC
1 ATCGATT-ATGAAAAGGGATGGTGACGACC
* *
26658763 ATCAAGTATGAAAAGGGATGGTGACGACC
1 ATCGATTATGAAAAGGGATGGTGACGACC
** *
26658792 ATCGATTAATGAAAAGGGATGGTTTCAACC
1 ATCGATT-ATGAAAAGGGATGGTGACGACC
* * * * *
26658822 ATGGAATATGAAAATGGATGGTTACAACC
1 ATCGATTATGAAAAGGGATGGTGACGACC
26658851 AT
1 AT
26658853 TGTTTAGCAC
Statistics
Matches: 149, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
29 101 0.68
30 48 0.32
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.24
Consensus pattern (29 bp):
ATCGATTATGAAAAGGGATGGTGACGACC
Found at i:26658762 original size:59 final size:59
Alignment explanation
Indices: 26658675--26658852 Score: 261
Period size: 59 Copynumber: 3.0 Consensus size: 59
26658665 AGTTTCGGCT
** *
26658675 ATCGATT-ATGAAAAGGGATGGTGACGACCATCAAGTATGAAAAGGGATGGTGATGACC
1 ATCGATTAATGAAAAGGGATGGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACC
26658733 ATCGATTAATGAAAAGGGATGGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACC
1 ATCGATTAATGAAAAGGGATGGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACC
* * * * *
26658792 ATCGATTAATGAAAAGGGATGGTTTCAACCATGGAA-TATGAAAATGGATGGTTACAACC
1 ATCGATTAATGAAAAGGGATGGTTTCGACCAT-CAAGTATGAAAAGGGATGGTGACGACC
26658851 AT
1 AT
26658853 TGTTTAGCAC
Statistics
Matches: 110, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
58 7 0.06
59 101 0.92
60 2 0.02
ACGTcount: A:0.37, C:0.12, G:0.28, T:0.23
Consensus pattern (59 bp):
ATCGATTAATGAAAAGGGATGGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACC
Found at i:26658773 original size:88 final size:89
Alignment explanation
Indices: 26658653--26658814 Score: 254
Period size: 88 Copynumber: 1.8 Consensus size: 89
26658643 GTTATCGATC
* * * *
26658653 ATGAAAAGGGATAGTTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATCAAGT-ATGAAA
1 ATGAAAAGGGATAGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACCATCAAGTAATGAAA
26658717 AGGGATGGTGATGACCATCGATTA
66 AGGGATGGTGATGACCATCGATTA
* * *
26658741 ATGAAAAGGGATGGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACCATCGATTAATGAAA
1 ATGAAAAGGGATAGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACCATCAAGTAATGAAA
26658806 AGGGATGGT
66 AGGGATGGT
26658815 TTCAACCATG
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
88 51 0.77
89 15 0.23
ACGTcount: A:0.36, C:0.11, G:0.30, T:0.23
Consensus pattern (89 bp):
ATGAAAAGGGATAGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACCATCAAGTAATGAAA
AGGGATGGTGATGACCATCGATTA
Found at i:26658833 original size:88 final size:88
Alignment explanation
Indices: 26658653--26658844 Score: 244
Period size: 88 Copynumber: 2.2 Consensus size: 88
26658643 GTTATCGATC
* * * * *
26658653 ATGAAAAGGGATAGTTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATCAAGTATGAAAA
1 ATGAAAAGGGATGGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACCATCAAGTATGAAAA
* *
26658718 GGGATGGTGATGACCATCGATTA
66 GGGATGGTGATAACCATCGAATA
* *
26658741 ATGAAAAGGGATGGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACCATCGATTAATGAAA
1 ATGAAAAGGGATGGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACCATCAAGT-ATGAAA
* *
26658806 AGGGATGGT-TTCAACCATGGAAT-
65 AGGGATGGTGAT-AACCATCGAATA
*
26658829 ATGAAAATGGATGGTT
1 ATGAAAAGGGATGGTT
26658845 ACAACCATTG
Statistics
Matches: 90, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
88 67 0.74
89 23 0.26
ACGTcount: A:0.36, C:0.11, G:0.29, T:0.24
Consensus pattern (88 bp):
ATGAAAAGGGATGGTTTCGACCATCAAGTATGAAAAGGGATGGTGACGACCATCAAGTATGAAAA
GGGATGGTGATAACCATCGAATA
Found at i:26661717 original size:20 final size:19
Alignment explanation
Indices: 26661688--26661738 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 19
26661678 TAGAAAATGA
*
26661688 TTTCTGGAAAATTACTTAC
1 TTTCTGGAAAATGACTTAC
26661707 TTTCTTGGAAAATGACTTAC
1 TTTC-TGGAAAATGACTTAC
26661727 TTTCCTGGAAAA
1 TTT-CTGGAAAA
26661739 GTTAATATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 4 0.14
20 24 0.83
21 1 0.03
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (19 bp):
TTTCTGGAAAATGACTTAC
Found at i:26662195 original size:15 final size:15
Alignment explanation
Indices: 26662170--26662232 Score: 58
Period size: 17 Copynumber: 4.0 Consensus size: 15
26662160 TTAATATTGA
26662170 TATTA-TAATATATT
1 TATTATTAATATATT
26662184 TATTATTAATATATGT
1 TATTATTAATATAT-T
26662200 ATATT-TGTAATAAATATT
1 -TATTAT-TAAT--ATATT
*
26662218 TATTATTAAAATATT
1 TATTATTAATATATT
26662233 AATATTGAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 13
0.75 0.02 0.24
Matches are distributed among these distances:
14 5 0.12
15 13 0.32
16 2 0.05
17 15 0.37
18 2 0.05
19 4 0.10
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
TATTATTAATATATT
Found at i:26662370 original size:25 final size:23
Alignment explanation
Indices: 26662311--26662370 Score: 57
Period size: 25 Copynumber: 2.4 Consensus size: 23
26662301 AAAATAAAAT
*
26662311 TAAAATATTAAATAATTTATTAA
1 TAAATTATTAAATAATTTATTAA
* *
26662334 AATAATAAATTAAATTAATTGTATTAA
1 TA-AAT-TATTAAA-TAATT-TATTAA
26662361 TAAATTATTA
1 TAAATTATTA
26662371 TGTGACTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
23 1 0.04
24 2 0.07
25 10 0.36
26 8 0.29
27 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (23 bp):
TAAATTATTAAATAATTTATTAA
Found at i:26669927 original size:24 final size:25
Alignment explanation
Indices: 26669882--26669932 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 25
26669872 ATTTTTGGGA
*
26669882 AAATTAATTTTGATTAAGTAAAATT
1 AAATTAATTTAGATTAAGTAAAATT
*
26669907 AAATTAA-TTAGATTAATTAAAATT
1 AAATTAATTTAGATTAAGTAAAATT
26669931 AA
1 AA
26669933 TATGATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (25 bp):
AAATTAATTTAGATTAAGTAAAATT
Found at i:26670442 original size:13 final size:13
Alignment explanation
Indices: 26670407--26670444 Score: 67
Period size: 14 Copynumber: 2.8 Consensus size: 13
26670397 GAGATATTTG
26670407 TAATTTGAAAACT
1 TAATTTGAAAACT
26670420 TAAGTTTGAAAACT
1 TAA-TTTGAAAACT
26670434 TAATTTGAAAA
1 TAATTTGAAAA
26670445 TTTGGAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.47, C:0.05, G:0.11, T:0.37
Consensus pattern (13 bp):
TAATTTGAAAACT
Found at i:26670763 original size:34 final size:34
Alignment explanation
Indices: 26670681--26670925 Score: 303
Period size: 34 Copynumber: 7.1 Consensus size: 34
26670671 TGCACTTGTC
* * * * *
26670681 TTTCTTACAGGGAATATTTTCTGTTCACGCATTA
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATCA
* * *
26670715 TTTTGTTGCAGGGAATCTCTCATGTTCACACATCA
1 -TTTCTTGCAGGGAATCTCTCCTGTTCACGCATCA
*
26670750 TTTCTTGCAGGGAATCTTTCCTGTTCACGCATCA
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATCA
*
26670784 TTTCTTGCAGGGAATCTTTCCTGTTCACGCATCA
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATCA
* *
26670818 TTTCTTGCAGGGAATCTTTCCTGTTCACGCATTA
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATCA
* *
26670852 TTTTGTTGCAGGGAATCTCT-CTGGTTCACACATCA
1 -TTTCTTGCAGGGAATCTCTCCT-GTTCACGCATCA
* **
26670887 TTTCTTGCAGGGAATCTCTCCTATTCATACATCA
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATCA
26670921 TTTCT
1 TTTCT
26670926 GGTATTATTT
Statistics
Matches: 187, Mismatches: 20, Indels: 7
0.87 0.09 0.03
Matches are distributed among these distances:
34 132 0.71
35 55 0.29
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (34 bp):
TTTCTTGCAGGGAATCTCTCCTGTTCACGCATCA
Found at i:26670861 original size:103 final size:102
Alignment explanation
Indices: 26670681--26670925 Score: 312
Period size: 103 Copynumber: 2.4 Consensus size: 102
26670671 TGCACTTGTC
* * * * *
26670681 TTTCTTACAGGGAATATTTTCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCATGTTCACAC
1 TTTCTTGCAGGGAATCTTTCCTGTTCACGCATCA-TTTCTTGCAGGGAATCTCTCATGTTCACAC
* *
26670746 ATCATTTCTTGCAGGGAATCTTTCCT-GTTCACGCATCA
65 ATCATTTCTTGCAGGGAATCTCT-CTGGTTCACACATCA
* * *
26670784 TTTCTTGCAGGGAATCTTTCCTGTTCACGCATCATTTCTTGCAGGGAATCTTTCCTGTTCACGCA
1 TTTCTTGCAGGGAATCTTTCCTGTTCACGCATCATTTCTTGCAGGGAATCTCTCATGTTCACACA
* *
26670849 TTATTTTGTTGCAGGGAATCTCTCTGGTTCACACATCA
66 TCA-TTTCTTGCAGGGAATCTCTCTGGTTCACACATCA
* * **
26670887 TTTCTTGCAGGGAATCTCTCCTATTCATACATCATTTCT
1 TTTCTTGCAGGGAATCTTTCCTGTTCACGCATCATTTCT
26670926 GGTATTATTT
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
102 31 0.25
103 93 0.75
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (102 bp):
TTTCTTGCAGGGAATCTTTCCTGTTCACGCATCATTTCTTGCAGGGAATCTCTCATGTTCACACA
TCATTTCTTGCAGGGAATCTCTCTGGTTCACACATCA
Done.