Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_1089 ID=scaffold_1089-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 624

Length: 1040
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37


Found at i:335 original size:13 final size:13

Alignment explanation


    Indices: 319--371  Score: 70
    Period size: 13  Copynumber: 4.1  Consensus size: 13

        309 TTTAAACCAA

                         
        319 ACTTTTCAAAAGC
          1 ACTTTTCAAAAGC

                *        
        332 ACTTCTCAAAAGC
          1 ACTTTTCAAAAGC

            *      * *   
        345 GCTTTTCCACAGC
          1 ACTTTTCAAAAGC

                         
        358 ACTTTTCAAAAGC
          1 ACTTTTCAAAAGC

             
        371 A
          1 A

        372 ATGACGAATT


Statistics
Matches: 32,  Mismatches: 8, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  13   32  1.00

ACGTcount: A:0.34, C:0.28, G:0.09, T:0.28


Consensus pattern (13 bp):   
ACTTTTCAAAAGC

Done.