Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_111 ID=scaffold_111-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15943
ACGTcount: A:0.25, C:0.12, G:0.17, T:0.27

Warning! 3115 characters in sequence are not A, C, G, or T


Found at i:2027 original size:14 final size:15

Alignment explanation


    Indices: 2008--2036  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1998 AACGGAAAAA

                           
       2008 GAAAGT-TTTGATTG
          1 GAAAGTCTTTGATTG

                           
       2022 GAAAGTCTTTGATTG
          1 GAAAGTCTTTGATTG

       2037 TGTATGCTAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    6  0.43
  15    8  0.57

ACGTcount: A:0.28, C:0.03, G:0.28, T:0.41


Consensus pattern (15 bp):   
GAAAGTCTTTGATTG
Done.