genome.fa.s11.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62681010

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  112  of  210  ( 25152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33012889--33013259	16	21.9	17	69	20	151	33	2	21	42	1.66
33012873--33013259	25	15.3	25	68	17	153	33	2	20	42	1.65
33013279--33013370	13	7.0	13	75	7	78	42	3	10	43	1.56
33013467--33013496	15	2.0	15	93	0	51	50	0	3	46	1.18
33013415--33013517	52	1.9	53	81	14	124	53	0	5	39	1.32
33013519--33013571	20	2.8	19	83	8	63	58	1	1	37	1.20
33014968--33015008	13	3.2	13	83	13	57	51	9	4	34	1.56
33015049--33015172	60	2.1	60	90	4	198	40	24	8	26	1.84
33016137--33016725	269	2.2	269	86	1	797	32	19	14	33	1.92
33016302--33016808	270	1.9	269	82	2	644	32	17	14	34	1.91
33017168--33017202	14	2.5	14	95	0	61	28	45	0	25	1.54
33017351--33017424	35	2.1	34	83	11	89	37	0	6	55	1.27
33018322--33018432	41	2.7	41	83	2	134	36	26	18	18	1.94
33018323--33018445	41	3.0	42	78	3	133	36	26	17	18	1.94
33018507--33018867	122	2.9	123	78	8	340	27	22	18	31	1.97
33027260--33027614	43	8.3	43	88	1	473	30	32	16	20	1.95
33031117--33031143	9	3.0	9	100	0	54	55	11	0	33	1.35
33031419--33031467	21	2.3	21	85	3	62	28	42	0	28	1.56
33031469--33031502	14	2.4	14	90	0	50	41	29	0	29	1.57
33031486--33031523	15	2.7	15	84	8	53	42	26	0	31	1.56
33031675--33031733	24	2.5	24	86	5	86	61	0	0	38	0.96
33031682--33031732	12	4.3	12	78	11	52	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33032186--33032459	41	6.7	41	86	3	372	29	34	17	19	1.94
33032516--33032628	40	2.9	40	84	7	142	25	26	17	30	1.98
33040683--33040782	13	7.6	13	73	8	62	36	20	1	43	1.59
33040676--33040777	40	2.6	40	81	7	111	36	20	0	42	1.59
33044692--33044769	35	2.2	36	88	6	115	26	16	10	46	1.79
33055654--33055701	12	4.0	12	84	7	62	66	2	6	25	1.26
33055654--33055692	4	9.5	4	83	5	51	66	2	5	25	1.25
33056480--33056592	60	1.9	60	80	7	131	31	13	30	24	1.93
33059381--33059550	35	4.9	35	88	0	250	22	24	15	37	1.93
33061573--33061651	22	3.7	21	74	16	54	40	16	5	37	1.70
33061609--33061663	21	2.7	21	94	5	96	36	14	10	38	1.81
33062440--33062546	44	2.4	44	88	0	160	28	26	15	29	1.96
33062627--33062852	44	5.1	42	88	5	281	31	26	15	26	1.96
33062395--33062686	152	1.9	152	86	2	417	26	25	16	31	1.97
33062627--33062852	88	2.6	88	91	2	348	31	26	15	26	1.96
33063026--33063400	44	8.7	44	69	13	163	28	22	20	28	1.99
33063000--33063415	217	1.9	219	90	2	667	27	23	20	29	1.99
33063607--33063776	93	1.8	93	83	2	225	28	24	19	28	1.98
33063422--33063943	260	2.0	260	89	0	803	26	25	20	27	1.99
33063864--33063970	50	2.1	49	77	5	115	26	26	21	26	2.00
33063977--33064149	88	2.0	88	88	0	256	27	26	19	27	1.99
33065397--33065440	19	2.3	19	88	0	61	0	22	0	77	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33065397--33065458	6	10.2	6	77	10	54	1	22	0	75	0.88
33070455--33070531	19	3.7	21	78	13	59	40	16	5	37	1.71
33070491--33070544	19	2.8	19	100	0	108	35	16	11	37	1.84
33071029--33071081	19	2.5	23	73	20	60	39	7	0	52	1.30
33072291--33072353	2	33.0	2	76	9	51	49	3	3	44	1.34
33073903--33073981	40	2.0	39	95	2	140	18	15	15	50	1.78
33073906--33073972	23	3.2	23	62	24	56	19	14	16	49	1.80
33074496--33074530	14	2.3	15	90	9	54	60	0	0	40	0.97
33075096--33075120	11	2.3	11	100	0	50	40	0	8	52	1.31
33076051--33076092	14	3.0	14	79	6	50	16	2	4	76	1.07
33077099--33077153	2	27.5	2	100	0	110	50	0	49	0	1.00
33093211--33093275	22	2.8	24	81	6	71	47	24	13	13	1.80
33097456--33097489	13	2.6	13	90	0	50	29	38	5	26	1.80
33112470--33112633	27	6.1	26	79	5	166	43	19	19	17	1.88
33112471--33112637	53	3.1	52	79	5	190	42	19	19	18	1.89
33112768--33113047	27	10.4	27	84	6	356	41	17	20	20	1.90
33113225--33113283	26	2.3	26	84	0	73	18	22	22	37	1.94
33113413--33113493	30	2.8	28	81	7	99	24	28	23	23	2.00
33120152--33120508	27	13.2	27	83	4	364	45	19	18	17	1.86
33120657--33120728	26	2.7	27	82	4	76	19	23	20	36	1.95
33121939--33121973	16	2.2	16	94	0	61	17	5	8	68	1.35
33145745--33146091	50	6.8	50	83	4	367	27	20	29	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33152853--33153200	50	6.9	50	83	3	358	27	21	27	22	1.99
33152853--33153200	150	2.3	152	82	5	398	27	21	27	22	1.99
33161578--33161696	61	2.0	61	81	3	141	33	14	24	27	1.94
33161569--33161788	61	3.7	61	74	8	139	36	17	24	22	1.95
33174719--33175874	114	10.2	113	82	2	1251	26	22	24	26	2.00
33174719--33175874	227	5.1	227	87	2	1365	26	22	24	26	2.00
33174719--33175874	341	3.4	339	83	3	1342	26	22	24	26	2.00
33180051--33180102	21	2.5	20	81	9	59	36	13	44	5	1.68
33180011--33180186	87	2.0	86	86	1	244	40	17	29	13	1.87
33180536--33180802	43	6.3	43	82	4	301	29	20	25	24	1.99
33181881--33181991	55	2.0	55	98	0	213	33	25	10	30	1.90
33184007--33184074	25	2.7	25	86	0	100	27	13	22	36	1.91
33184133--33184203	29	2.4	29	92	0	115	43	2	16	36	1.63
33184191--33184216	13	2.0	13	100	0	52	61	0	7	30	1.24
33184162--33184315	81	1.9	81	87	2	227	46	3	17	33	1.64
33184162--33184316	40	3.8	40	87	3	211	45	3	17	33	1.64
33184264--33184360	27	3.7	24	75	16	86	40	3	18	38	1.66
33184250--33184351	53	1.9	53	82	11	129	39	3	18	38	1.69
33188934--33188986	28	1.9	27	84	3	70	16	9	7	66	1.43
33189611--33189647	19	1.9	19	94	0	65	32	24	10	32	1.90
33198244--33198277	3	11.3	3	100	0	68	64	0	0	35	0.94
33203035--33203102	25	2.8	23	76	12	73	39	0	1	58	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33203345--33203462	60	2.0	59	96	1	218	33	0	12	53	1.45
33203829--33203987	41	3.8	41	77	13	155	62	0	1	35	1.06
33203842--33203982	51	3.0	46	84	9	153	64	0	2	33	1.05
33204236--33204278	21	2.0	23	86	9	63	72	2	0	25	0.97
33205208--33205255	22	2.2	22	92	0	78	31	10	10	47	1.71
33209515--33209541	13	2.1	13	100	0	54	22	44	7	25	1.79
33210194--33210349	11	14.9	11	74	18	93	61	0	1	37	1.04
33210254--33210287	9	3.6	9	85	14	50	79	0	0	20	0.73
33210194--33210399	43	4.7	41	73	20	134	62	0	1	35	1.07
33210291--33210324	17	2.0	17	88	0	50	64	0	0	35	0.94
33210274--33210338	31	2.1	30	86	8	87	64	0	1	33	1.03
33210263--33210399	41	3.3	41	90	7	206	64	0	2	32	1.05
33210420--33210449	15	1.9	16	93	6	53	3	43	53	0	1.17
33211472--33211610	61	2.3	61	79	6	156	26	27	14	31	1.95
33217928--33218011	33	2.5	33	83	7	100	28	11	39	20	1.88
33220923--33221041	60	2.0	60	91	3	195	52	12	0	33	1.45
33231580--33231621	21	2.0	21	86	13	61	61	4	4	28	1.36
33235462--33235506	18	2.5	19	75	13	51	57	17	0	24	1.40
33235651--33235683	2	16.0	2	93	6	57	48	3	0	48	1.17
33240416--33240462	20	2.3	20	96	0	85	40	12	0	46	1.42
33241745--33241810	26	2.6	25	80	7	78	36	22	22	18	1.95
33247688--33247735	24	2.0	24	87	0	69	27	20	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33247704--33247842	49	2.8	50	76	9	131	38	20	23	17	1.93
33251501--33251536	18	2.0	18	88	0	54	33	0	2	63	1.08
33252241--33252364	62	2.0	62	95	0	221	28	9	13	48	1.74
33253653--33253716	28	2.3	28	84	10	78	53	1	0	45	1.10
33254773--33254836	26	2.5	27	75	22	66	39	0	1	59	1.07
33256337--33256404	20	3.3	20	83	10	75	38	0	2	58	1.13
33257773--33257878	52	2.0	52	100	0	212	35	11	11	41	1.77
33263762--33263799	12	3.2	12	85	3	51	81	0	13	5	0.85
33264088--33264124	18	2.1	18	100	0	74	27	10	5	56	1.55
33265921--33265970	23	2.1	23	85	3	64	46	18	18	18	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210