Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62681010
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1052928 characters in sequence are not A, C, G, or T
File 124 of 210
Found at i:37690889 original size:62 final size:62
Alignment explanation
Indices: 37690782--37690934 Score: 234
Period size: 62 Copynumber: 2.5 Consensus size: 62
37690772 AATTGACAGT
* * * *
37690782 AAAAAGGATCTAGCCCGGACGGGTGATCCTATCCTGATATAGCCCTCCTGAAGAATATATGG
1 AAAATGGATTTAGCCCAGACGGGTGATCCTATCCTGATATAGCCCTCCTAAAGAATATATGG
* * *
37690844 AAAATGGATTTAGCCCAGACAGGTGATCCTATCTTGATATAGCCCTCCTAAAGAATATGTGG
1 AAAATGGATTTAGCCCAGACGGGTGATCCTATCCTGATATAGCCCTCCTAAAGAATATATGG
*
37690906 AAAATGGATTTAGCCCAGACGGGTAATCC
1 AAAATGGATTTAGCCCAGACGGGTGATCC
37690935 AAATTAGGGT
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 82 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (62 bp):
AAAATGGATTTAGCCCAGACGGGTGATCCTATCCTGATATAGCCCTCCTAAAGAATATATGG
Found at i:37702864 original size:16 final size:15
Alignment explanation
Indices: 37702832--37702875 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
37702822 TGATAATAAC
37702832 TAATATATAATTATAT
1 TAAT-TATAATTATAT
*
37702848 TTATTATAATATATAT
1 TAATTATAAT-TATAT
*
37702864 TAATTATTATTA
1 TAATTATAATTA
37702876 ACTTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 8 0.33
16 16 0.67
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TAATTATAATTATAT
Found at i:37702875 original size:22 final size:22
Alignment explanation
Indices: 37702832--37702873 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
37702822 TGATAATAAC
37702832 TAATATATAATTATATTTATTA
1 TAATATATAATTATATTTATTA
37702854 TAATATAT-ATTA-A-TTATTA
1 TAATATATAATTATATTTATTA
37702873 T
1 T
37702874 TAACTTTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 1 0.05
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATATATAATTATATTTATTA
Found at i:37706987 original size:21 final size:23
Alignment explanation
Indices: 37706963--37707004 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
37706953 AAACATGCGA
37706963 TTTAAAGTCT-AATAA-ATCAGT
1 TTTAAAGTCTAAATAACATCAGT
37706984 TTTAAAGTCTAAATAACATCA
1 TTTAAAGTCTAAATAACATCA
37707005 AAAACTAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 10 0.53
22 5 0.26
23 4 0.21
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.36
Consensus pattern (23 bp):
TTTAAAGTCTAAATAACATCAGT
Found at i:37727760 original size:17 final size:17
Alignment explanation
Indices: 37727718--37727762 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
37727708 CTAGGCTGAC
37727718 TTTTAA-TTTGTTTTGT
1 TTTTAATTTTGTTTTGT
37727734 TTTTCAATTTTGTTTTGT
1 TTTT-AATTTTGTTTTGT
37727752 TTATT-ATTTTG
1 TT-TTAATTTTG
37727763 GTTCCTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 4 0.15
17 8 0.31
18 12 0.46
19 2 0.08
ACGTcount: A:0.13, C:0.02, G:0.11, T:0.73
Consensus pattern (17 bp):
TTTTAATTTTGTTTTGT
Found at i:37730298 original size:20 final size:21
Alignment explanation
Indices: 37730261--37730301 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
37730251 TATGTAATCA
37730261 TTATTTTCATAATCTATATAT
1 TTATTTTCATAATCTATATAT
37730282 TTATTTT-ATAA-CTTATATAT
1 TTATTTTCATAATC-TATATAT
37730302 GTACATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.05
20 11 0.58
21 7 0.37
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (21 bp):
TTATTTTCATAATCTATATAT
Found at i:37736339 original size:7 final size:7
Alignment explanation
Indices: 37736329--37736402 Score: 51
Period size: 7 Copynumber: 10.7 Consensus size: 7
37736319 TTCTCAATCC
37736329 TCAATTT
1 TCAATTT
37736336 TCAA-TT
1 TCAATTT
37736342 TCAATTT
1 TCAATTT
* *
37736349 CCAGTTT
1 TCAATTT
* *
37736356 CCAGTTT
1 TCAATTT
*
37736363 CCAATTT
1 TCAATTT
*
37736370 TCAATTC
1 TCAATTT
*
37736377 TCAATCT
1 TCAATTT
**
37736384 TCAATCC
1 TCAATTT
37736391 TCAATTT
1 TCAATTT
*
37736398 GCAAT
1 TCAAT
37736403 CCTCAATCCT
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
6 6 0.11
7 49 0.89
ACGTcount: A:0.27, C:0.24, G:0.04, T:0.45
Consensus pattern (7 bp):
TCAATTT
Found at i:37736341 original size:21 final size:21
Alignment explanation
Indices: 37736317--37736420 Score: 63
Period size: 21 Copynumber: 5.0 Consensus size: 21
37736307 CTCCATCCTA
37736317 AATTCTCAATCCTCAATTTTC
1 AATTCTCAATCCTCAATTTTC
* * *
37736338 AATT-TCAAT-TTCCAGTTTCC
1 AATTCTCAATCCT-CAATTTTC
* ** *
37736358 AGTT-TCCAATTTTCAATTCTC
1 AATTCT-CAATCCTCAATTTTC
*
37736379 AA-TCTTCAATCCTCAATTTGC
1 AATTC-TCAATCCTCAATTTTC
*
37736400 AATCCTCAATCCTCAAATTTT
1 AATTCTCAATCCTC-AATTTT
37736421 TTTAATTCTT
Statistics
Matches: 62, Mismatches: 14, Indels: 13
0.70 0.16 0.15
Matches are distributed among these distances:
19 1 0.02
20 16 0.26
21 36 0.58
22 9 0.15
ACGTcount: A:0.28, C:0.27, G:0.03, T:0.42
Consensus pattern (21 bp):
AATTCTCAATCCTCAATTTTC
Found at i:37736381 original size:14 final size:14
Alignment explanation
Indices: 37736317--37736409 Score: 57
Period size: 14 Copynumber: 6.7 Consensus size: 14
37736307 CTCCATCCTA
**
37736317 AATTCTCAATCCTC
1 AATTCTCAATTTTC
*
37736331 AATTTTCAA-TTTC
1 AATTCTCAATTTTC
* *
37736344 AATT-TCCAGTTTCC
1 AATTCT-CAATTTTC
*
37736358 AGTT-TCCAATTTTC
1 AATTCT-CAATTTTC
*
37736372 AATTCTCAATCTTC
1 AATTCTCAATTTTC
* *
37736386 AATCCTCAATTTGC
1 AATTCTCAATTTTC
*
37736400 AATCCTCAAT
1 AATTCTCAAT
37736410 CCTCAAATTT
Statistics
Matches: 63, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
12 1 0.02
13 8 0.13
14 53 0.84
15 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.03, T:0.42
Consensus pattern (14 bp):
AATTCTCAATTTTC
Found at i:37740994 original size:45 final size:46
Alignment explanation
Indices: 37740909--37740998 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 46
37740899 AACAGATACT
* *
37740909 CGGTGGATTCAGCACATAGCAAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAAACCACCTTACTAATCAATGATGTC
37740955 CGGTGGAATCAGCACATAGC-AACCACCTTACTAATCAATGATGT
1 CGGTGGAATCAGCACATAGCAAACCACCTTACTAATCAATGATGT
37740999 TCAGTTCACA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
45 23 0.55
46 19 0.45
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (46 bp):
CGGTGGAATCAGCACATAGCAAACCACCTTACTAATCAATGATGTC
Found at i:37741067 original size:51 final size:52
Alignment explanation
Indices: 37741009--37741144 Score: 206
Period size: 50 Copynumber: 2.7 Consensus size: 52
37740999 TCAGTTCACA
*
37741009 TAGTAGCCTACACATAGTACTACACATGTGACCATTACCA-TCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCCGATACACG
* * *
37741060 TAGTAGCCTGCACATAGTACTACACATGCGACC--TATCATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCCGATACACG
*
37741110 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACATGTGACCAT
37741145 CATTTTCACT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
49 4 0.05
50 41 0.54
51 31 0.41
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (52 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCCGATACACG
Found at i:37754082 original size:27 final size:27
Alignment explanation
Indices: 37754044--37754250 Score: 173
Period size: 27 Copynumber: 8.0 Consensus size: 27
37754034 TAATTCAATG
37754044 ACCCTTCGGGGGTAATTCAGTCATTTT
1 ACCCTTCGGGGGTAATTCAGTCATTTT
37754071 ACCCTTCGGGGGTAATTCAGTCATTTT
1 ACCCTTCGGGGGTAATTCAGTCATTTT
* * * * *
37754098 TCTCTTCAGAGGTAATTCGGTCATTTT
1 ACCCTTCGGGGGTAATTCAGTCATTTT
** * *
37754125 ACCCTT-TAGGGTAA-T-A---A-ATG
1 ACCCTTCGGGGGTAATTCAGTCATTTT
*
37754145 ACCTTTCGGGGGTAATTC-GATCATTTT
1 ACCCTTCGGGGGTAATTCAG-TCATTTT
* *
37754172 ACCTTTCGGGGGTAATTCGGTCATTTT
1 ACCCTTCGGGGGTAATTCAGTCATTTT
37754199 ACCCTTC-GGGGTAATTC-GATCATTTT
1 ACCCTTCGGGGGTAATTCAG-TCATTTT
* * * * *
37754225 AACCATCGAGGGTATTTCAATCATTT
1 ACCCTTCGGGGGTAATTCAGTCATTT
37754251 GCCCACAATT
Statistics
Matches: 144, Mismatches: 24, Indels: 24
0.75 0.12 0.12
Matches are distributed among these distances:
20 6 0.04
21 7 0.05
22 1 0.01
25 2 0.01
26 28 0.19
27 99 0.69
28 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (27 bp):
ACCCTTCGGGGGTAATTCAGTCATTTT
Found at i:37754159 original size:74 final size:74
Alignment explanation
Indices: 37754075--37754213 Score: 201
Period size: 74 Copynumber: 1.9 Consensus size: 74
37754065 CATTTTACCC
* *
37754075 TTCGGGGGTAATTC-AGTCATTTT-TCTCTTCAGAGGTAATTCGGTCATTTTACCCTTTAGGGTA
1 TTCGGGGGTAATTCGA-TCATTTTACCT-TTCAGAGGTAATTCGGTCATTTTACCCTTCAGGGTA
37754138 ATAAATGACCT
64 ATAAATGACCT
* * *
37754149 TTCGGGGGTAATTCGATCATTTTACCTTTCGGGGGTAATTCGGTCATTTTACCCTTCGGGGTAAT
1 TTCGGGGGTAATTCGATCATTTTACCTTTCAGAGGTAATTCGGTCATTTTACCCTTCAGGGTAAT
37754214 TCGATCATTT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
74 55 0.95
75 3 0.05
ACGTcount: A:0.20, C:0.18, G:0.23, T:0.39
Consensus pattern (74 bp):
TTCGGGGGTAATTCGATCATTTTACCTTTCAGAGGTAATTCGGTCATTTTACCCTTCAGGGTAAT
AAATGACCT
Found at i:37754237 original size:101 final size:102
Alignment explanation
Indices: 37754031--37754238 Score: 278
Period size: 101 Copynumber: 2.0 Consensus size: 102
37754021 TAAATTGAAT
*
37754031 GGGTAATTCAATGACCCTTCGGGGGTAATTCAGTCATTTTACCCTTCGGGGGTAATTCAGTCATT
1 GGGTAATTAAATGACCCTTCGGGGGTAATTCAGTCATTTTACCCTTCGGGGGTAATTCAGTCATT
* * * * **
37754096 TTTCTCTTCAGAGGTAATTCGGTCATTTTACCCTTTA
66 TTACCCTTCAGAGGTAATTCGATCATTTTACCATCGA
* * *
37754133 GGGTAA-TAAATGACCTTTCGGGGGTAATTC-GATCATTTTACCTTTCGGGGGTAATTCGGTCAT
1 GGGTAATTAAATGACCCTTCGGGGGTAATTCAG-TCATTTTACCCTTCGGGGGTAATTCAGTCAT
*
37754196 TTTACCCTTC-GGGGTAATTCGATCATTTTAACCATCGA
65 TTTACCCTTCAGAGGTAATTCGATCATTTT-ACCATCGA
37754234 GGGTA
1 GGGTA
37754239 TTTCAATCAT
Statistics
Matches: 93, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
100 18 0.19
101 69 0.74
102 6 0.06
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.37
Consensus pattern (102 bp):
GGGTAATTAAATGACCCTTCGGGGGTAATTCAGTCATTTTACCCTTCGGGGGTAATTCAGTCATT
TTACCCTTCAGAGGTAATTCGATCATTTTACCATCGA
Found at i:37756575 original size:25 final size:25
Alignment explanation
Indices: 37756499--37756597 Score: 103
Period size: 25 Copynumber: 4.0 Consensus size: 25
37756489 TCATTAGGGA
* **
37756499 TTACCGATTCTCAGCTTATATGAGC
1 TTACCGATTCACAGCTCGTATGAGC
* *
37756524 TTACCGATT-ACAGATCATGA-GAGC
1 TTACCGATTCACAGCTCGT-ATGAGC
* **
37756548 TTACTGATTCTTAGCTCGTATGAGC
1 TTACCGATTCACAGCTCGTATGAGC
37756573 TTACCGATTCACAGCTCGTATGAGC
1 TTACCGATTCACAGCTCGTATGAGC
37756598 ATACATGTAC
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
24 19 0.32
25 41 0.68
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.32
Consensus pattern (25 bp):
TTACCGATTCACAGCTCGTATGAGC
Found at i:37762226 original size:56 final size:50
Alignment explanation
Indices: 37762008--37762256 Score: 318
Period size: 50 Copynumber: 4.8 Consensus size: 50
37761998 GATAATAACA
* ** * *
37762008 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * *
37762059 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
37762109 TGCCAATGCCATGACTCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
37762159 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATC-T-CGG
*
37762214 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
37762257 TTACCCAAAT
Statistics
Matches: 173, Mismatches: 19, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
50 94 0.54
51 33 0.19
53 3 0.02
54 1 0.01
55 2 0.01
56 40 0.23
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:37762372 original size:13 final size:13
Alignment explanation
Indices: 37762351--37762382 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
37762341 GCTTGGATCA
*
37762351 TCATCAAATAAAT
1 TCATAAAATAAAT
37762364 TCATAAAATAAAT
1 TCATAAAATAAAT
37762377 TCATAA
1 TCATAA
37762383 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:37762626 original size:29 final size:29
Alignment explanation
Indices: 37762594--37762649 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
37762584 CCTCGACTCT
37762594 AACTTTT-CAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTAC-ATTTTGCCCCTA
* *
37762623 AACTTTTACATAATTACATTTTTCCCC
1 AACTTTTACAAAATTACATTTTGCCCC
37762650 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.32, C:0.25, G:0.02, T:0.41
Consensus pattern (29 bp):
AACTTTTACAAAATTACATTTTGCCCCTA
Found at i:37769302 original size:15 final size:15
Alignment explanation
Indices: 37769261--37769312 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 15
37769251 TCCATTGAGC
*
37769261 GAGA-AAAAGAAAAA
1 GAGAGAAAACAAAAA
37769275 GAGAG-AAACAAAAA
1 GAGAGAAAACAAAAA
* *
37769289 GAGTGAAAATAAAAA
1 GAGAGAAAACAAAAA
*
37769304 GAAAGAAAA
1 GAGAGAAAA
37769313 GAATGATGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
14 16 0.52
15 15 0.48
ACGTcount: A:0.73, C:0.02, G:0.21, T:0.04
Consensus pattern (15 bp):
GAGAGAAAACAAAAA
Found at i:37775301 original size:20 final size:21
Alignment explanation
Indices: 37775266--37775304 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
37775256 TGAAGTAAGT
37775266 TTGAAATGGAAAAGTATTGGA
1 TTGAAATGGAAAAGTATTGGA
*
37775287 TTGAAAT-GTAAAGTATTG
1 TTGAAATGGAAAAGTATTG
37775305 CATGGTTTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.41, C:0.00, G:0.26, T:0.33
Consensus pattern (21 bp):
TTGAAATGGAAAAGTATTGGA
Found at i:37775652 original size:45 final size:45
Alignment explanation
Indices: 37775584--37775686 Score: 161
Period size: 45 Copynumber: 2.3 Consensus size: 45
37775574 GATTCTTTGA
* * * *
37775584 AGCTTGTGTGAGCAGTATCATGTAGTGGATAATGTCTCGTTTGTC
1 AGCTTGTGTGAGCAGCATAATGTAGTGAATAATGTCCCGTTTGTC
*
37775629 AGCTTGTGTGAGCAGCATAATGTATTGAATAATGTCCCGTTTGTC
1 AGCTTGTGTGAGCAGCATAATGTAGTGAATAATGTCCCGTTTGTC
37775674 AGCTTGTGTGAGC
1 AGCTTGTGTGAGC
37775687 GTTACCCTCC
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.21, C:0.15, G:0.28, T:0.36
Consensus pattern (45 bp):
AGCTTGTGTGAGCAGCATAATGTAGTGAATAATGTCCCGTTTGTC
Found at i:37787820 original size:43 final size:43
Alignment explanation
Indices: 37787773--37787934 Score: 265
Period size: 43 Copynumber: 3.7 Consensus size: 43
37787763 AGGTATATTA
37787773 AAATATAATTAAAATCATTTTGATTATATAATATTTTTAATTG
1 AAATATAATTAAAATCATTTTGATTATATAATATTTTTAATTG
37787816 AAATATAATTAAAATCATTTTGATTATATAATATTTTTAATTG
1 AAATATAATTAAAATCATTTTGATTATATAATATTTTTAATTG
* *
37787859 AAATATAATTAAAATCATTTTGATTATAT-A-ATCTTTAATATA
1 AAATATAATTAAAATCATTTTGATTATATAATATTTTTAAT-TG
37787901 AAACTATACATTAAAATCATTTTGATTATATAAT
1 AAA-TATA-ATTAAAATCATTTTGATTATATAAT
37787935 CTTAATATAA
Statistics
Matches: 112, Mismatches: 2, Indels: 7
0.93 0.02 0.06
Matches are distributed among these distances:
41 8 0.07
42 5 0.04
43 76 0.68
44 22 0.20
45 1 0.01
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (43 bp):
AAATATAATTAAAATCATTTTGATTATATAATATTTTTAATTG
Found at i:37787823 original size:20 final size:20
Alignment explanation
Indices: 37787798--37787867 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
37787788 CATTTTGATT
37787798 ATATAATATTTTTAATTGAA
1 ATATAATATTTTTAATTGAA
*** * * *
37787818 ATATAATTAAAATCATTTTGATT
1 ATATAA-TATTTTTA-ATTGA-A
37787841 ATATAATATTTTTAATTGAA
1 ATATAATATTTTTAATTGAA
37787861 ATATAAT
1 ATATAAT
37787868 TAAAATCATT
Statistics
Matches: 35, Mismatches: 12, Indels: 6
0.66 0.23 0.11
Matches are distributed among these distances:
20 13 0.37
21 8 0.23
22 8 0.23
23 6 0.17
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (20 bp):
ATATAATATTTTTAATTGAA
Found at i:37790693 original size:44 final size:45
Alignment explanation
Indices: 37790628--37790718 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
37790618 ACCTCTATTC
* * *
37790628 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
37790672 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
37790717 CA
1 CA
37790719 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:37790720 original size:16 final size:16
Alignment explanation
Indices: 37790699--37790767 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
37790689 GATTAGCTAT
37790699 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
37790715 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
37790732 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
37790748 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
37790764 TACA
1 TACA
37790768 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:37790741 original size:33 final size:32
Alignment explanation
Indices: 37790699--37790767 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
37790689 GATTAGCTAT
37790699 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
37790732 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
37790764 TACA
1 TACA
37790768 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:37793023 original size:27 final size:27
Alignment explanation
Indices: 37792993--37793102 Score: 139
Period size: 27 Copynumber: 4.1 Consensus size: 27
37792983 AGACATTCCC
* *
37792993 TTCATAAATCGCCACAAAGGCTTCCTT
1 TTCATAGATCACCACAAAGGCTTCCTT
* * * *
37793020 TTCATAGGTCGCCACAAAGGTTTCATT
1 TTCATAGATCACCACAAAGGCTTCCTT
*
37793047 TTCATAGGTCACCACAAAGGCTTCCTT
1 TTCATAGATCACCACAAAGGCTTCCTT
* *
37793074 TTCATAGATCACCAGAAAGGGTTCCTT
1 TTCATAGATCACCACAAAGGCTTCCTT
37793101 TT
1 TT
37793103 TCTGGCATGT
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (27 bp):
TTCATAGATCACCACAAAGGCTTCCTT
Found at i:37793034 original size:54 final size:54
Alignment explanation
Indices: 37792976--37793080 Score: 122
Period size: 54 Copynumber: 1.9 Consensus size: 54
37792966 TTCAGAGTGT
* *
37792976 GCCACACAGACATTC-CCTTCATAAATCGCCACAAAGGCTTCCTTTTCATAGGTC
1 GCCACAAAG-CATTCACCTTCATAAATCACCACAAAGGCTTCCTTTTCATAGGTC
** ** **
37793030 GCCACAAAGGTTTCATTTTCATAGGTCACCACAAAGGCTTCCTTTTCATAG
1 GCCACAAAGCATTCACCTTCATAAATCACCACAAAGGCTTCCTTTTCATAG
37793081 ATCACCAGAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
53 3 0.07
54 39 0.93
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.29
Consensus pattern (54 bp):
GCCACAAAGCATTCACCTTCATAAATCACCACAAAGGCTTCCTTTTCATAGGTC
Found at i:37798288 original size:50 final size:50
Alignment explanation
Indices: 37798206--37798496 Score: 325
Period size: 50 Copynumber: 5.8 Consensus size: 50
37798196 ATTTGGGTAA
*
37798206 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * *
37798256 AGAGGTTCCATGTAAGACCATGTCTGGGACATGACGTTGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * *
37798306 GGAGGTCCCATGTAAGACCATGTCTGGGACAAGGCGTTGGCACCGAGAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
37798356 AGAGGTCCCCCGTAAGACCATGTCTGGTACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * * * *
37798406 AGAACTCCCATGTAGGACCATATCTGGGATATGGAATTGGCA--GTACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* ** * *
37798455 AAACATCCCATGTAAGACCATGTCTAGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
37798497 TGTTATTATC
Statistics
Matches: 201, Mismatches: 39, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
48 1 0.00
49 37 0.18
50 163 0.81
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:37801808 original size:26 final size:26
Alignment explanation
Indices: 37801779--37801852 Score: 103
Period size: 26 Copynumber: 2.8 Consensus size: 26
37801769 ACACCAATAT
*
37801779 CGCAGCAAAGCTGCCAGTAATAGTAC
1 CGCAGCAAAGCTGCCAGTAACAGTAC
** *
37801805 CGCAATAAAGCTGCCAGTAACAGTAT
1 CGCAGCAAAGCTGCCAGTAACAGTAC
*
37801831 CGCAGCAAACCTGCCAGTAACA
1 CGCAGCAAAGCTGCCAGTAACA
37801853 ATATACTTCC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.36, C:0.28, G:0.20, T:0.15
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAGTAACAGTAC
Found at i:37802189 original size:27 final size:27
Alignment explanation
Indices: 37802019--37802187 Score: 191
Period size: 27 Copynumber: 6.3 Consensus size: 27
37802009 GGGTATAACA
* * * *
37802019 GTCATTTTACCCTACGGGGGTGTTTTG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
37802046 GTCATTTTATCGTATCG-GGGTATTTCG
1 GTCATTTTACCCTAT-GAGGGTATTTCG
37802073 GTCATTTTACCCTAT-AGGGGTATTTCG
1 GTCATTTTACCCTATGA-GGGTATTTCG
*
37802100 GTCATTTTACCCTATG-GGGTAATTCCG
1 GTCATTTTACCCTATGAGGGT-ATTTCG
*
37802127 ATCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
37802154 GTCATTTAACCCTATGAAGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
*
37802181 ATCATTT
1 GTCATTT
37802188 AATGACCTCT
Statistics
Matches: 122, Mismatches: 14, Indels: 12
0.82 0.09 0.08
Matches are distributed among these distances:
26 4 0.03
27 113 0.93
28 5 0.04
ACGTcount: A:0.19, C:0.18, G:0.22, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCG
Found at i:37805677 original size:50 final size:50
Alignment explanation
Indices: 37805566--37805811 Score: 267
Period size: 50 Copynumber: 4.8 Consensus size: 50
37805556 ATTTGGGTAA
* * * *
37805566 AGAGATCCCATGTAAGACCATGTTTGGGACATGACATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATG
* * *
37805622 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGTACCGAGATC
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
37805672 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * * *
37805722 AGAGGTCCCCCGTAAGACCATGTATGGGACATGGCATGGGCATCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
37805772 AGAACTCCCATGTAAGACCATATCTAGGATATGGCATTGG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
37805812 TAGTACAGGA
Statistics
Matches: 165, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
50 124 0.75
53 3 0.02
55 1 0.01
56 37 0.22
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:37806114 original size:20 final size:20
Alignment explanation
Indices: 37806076--37806114 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
37806066 TAAGCAAACA
* *
37806076 AGTAAGTAAACTAGTAAGTG
1 AGTAAGTAAACAAGAAAGTG
*
37806096 AGTAAGTAAAGAAGAAAGT
1 AGTAAGTAAACAAGAAAGT
37806115 AAAGATCCTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.51, C:0.03, G:0.26, T:0.21
Consensus pattern (20 bp):
AGTAAGTAAACAAGAAAGTG
Found at i:37811961 original size:50 final size:50
Alignment explanation
Indices: 37811850--37812095 Score: 267
Period size: 50 Copynumber: 4.8 Consensus size: 50
37811840 ATTTGGGTAA
* * *
37811850 AGAGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATG
*
37811906 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * **
37811956 AGAGGTCTCATGTAAGACCATATTTGGGACATGGTGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * * *
37812006 AGAGGTCCCCCGTAAGACCATGACTGGGACCTGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
37812056 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
37812096 TAGTACAGGA
Statistics
Matches: 162, Mismatches: 28, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
50 119 0.73
53 3 0.02
55 1 0.01
56 39 0.24
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:37812398 original size:20 final size:20
Alignment explanation
Indices: 37812360--37812398 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
37812350 AAAGAAAACA
*
37812360 AGTAAGTAAACAAGTAAGTC
1 AGTAAGTAAACAAGAAAGTC
*
37812380 AGTAAGTAAAGAAGAAAGT
1 AGTAAGTAAACAAGAAAGT
37812399 AAAGATCCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.05, G:0.23, T:0.18
Consensus pattern (20 bp):
AGTAAGTAAACAAGAAAGTC
Found at i:37817915 original size:50 final size:50
Alignment explanation
Indices: 37817835--37818024 Score: 238
Period size: 50 Copynumber: 3.8 Consensus size: 50
37817825 ATTTGGGTAA
* * *
37817835 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATATCTGGGACATGGCATTGGCACCGAGATG
* *
37817885 AGAGGTCCCATGTAAGACCATATTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATATCTGGGACATGGCATTGGCACCGAGATG
** * * * *
37817935 AGAGGTCCCCCGTAAGACCATGA-CTGGGACCTGACATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCAT-ATCTGGGACATGGCATTGGCACCGAGATG
** *
37817985 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGG
1 AGAGGTCCCATGTAAGACCATATCTGGGACATGGCATTGG
37818025 TAGTACAGGA
Statistics
Matches: 119, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 1 0.01
50 117 0.98
51 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATATCTGGGACATGGCATTGGCACCGAGATG
Found at i:37819844 original size:36 final size:36
Alignment explanation
Indices: 37819733--37819857 Score: 103
Period size: 41 Copynumber: 3.4 Consensus size: 36
37819723 ACTAAAGTCC
37819733 AGTCTAGTACCCAAAGCCTCGTGTAACTTCTTCCAGA
1 AGTCTAGTACCCAAAGCCTCGTGTAACTTCTTCCA-A
* ** * ** *
37819770 A-TCAAGACGTGATGCAAGGATTTCGTGTAACTTTTTCCAA
1 AGTC--TA-GT-ACCCAAAG-CCTCGTGTAACTTCTTCCAA
37819810 AGTCTAGTACCCAAAGCCTCGTGTAACTTCTTCC--
1 AGTCTAGTACCCAAAGCCTCGTGTAACTTCTTCCAA
37819844 AGTCTAGTATCCCA
1 AGTCTAGTA-CCCA
37819858 TGCAGTCTTA
Statistics
Matches: 67, Mismatches: 14, Indels: 16
0.69 0.14 0.16
Matches are distributed among these distances:
34 9 0.13
35 4 0.06
36 17 0.25
37 6 0.09
38 3 0.04
39 3 0.04
40 7 0.10
41 18 0.27
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (36 bp):
AGTCTAGTACCCAAAGCCTCGTGTAACTTCTTCCAA
Found at i:37824854 original size:81 final size:81
Alignment explanation
Indices: 37824740--37824934 Score: 232
Period size: 81 Copynumber: 2.4 Consensus size: 81
37824730 GGTATAACAG
* * ** ** *
37824740 TCATTTTACCCTAT-GGGAGTATTTCAGTCATTTTACTGTATGGGGGT-ATTTTGGTCATTTTAC
1 TCATTTTACCTTATAGGG-GTATTTCGGTCATTTTACCCTAT-GGGGTAATTCCGATCATTTTAC
* *
37824803 CTTATGGGGGTATTTCAA
64 CCTATGAGGGTATTTCAA
*
37824821 TCATTTTACCTTATAGGGGTATTTCGGTTATTTTACCCTATGGGGTAATTCCGATCATTTTACCC
1 TCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCCTATGGGGTAATTCCGATCATTTTACCC
**
37824886 TATGAGGGTATTTCGG
66 TATGAGGGTATTTCAA
* *
37824902 TCATTTAACCTTATAAGGGTATTTCGGTCATTT
1 TCATTTTACCTTATAGGGGTATTTCGGTCATTT
37824935 AATGACCTCT
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 5 0.05
81 89 0.92
82 3 0.03
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.44
Consensus pattern (81 bp):
TCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCCTATGGGGTAATTCCGATCATTTTACCC
TATGAGGGTATTTCAA
Found at i:37824936 original size:27 final size:27
Alignment explanation
Indices: 37824739--37824934 Score: 202
Period size: 27 Copynumber: 7.3 Consensus size: 27
37824729 GGGTATAACA
* *
37824739 GTCATTTTACCCTAT-GGGAGTATTTCA
1 GTCATTTTACCTTATAGGG-GTATTTCG
* *
37824766 GTCATTTTA-CTGTATGGGGGTATTTTG
1 GTCATTTTACCT-TATAGGGGTATTTCG
* *
37824793 GTCATTTTACCTTATGGGGGTATTTCA
1 GTCATTTTACCTTATAGGGGTATTTCG
*
37824820 ATCATTTTACCTTATAGGGGTATTTCG
1 GTCATTTTACCTTATAGGGGTATTTCG
* * *
37824847 GTTATTTTACCCTAT-GGGGTAATTCCG
1 GTCATTTTACCTTATAGGGGT-ATTTCG
* *
37824874 ATCATTTTACCCTAT-GAGGGTATTTCG
1 GTCATTTTACCTTATAG-GGGTATTTCG
* *
37824901 GTCATTTAACCTTATAAGGGTATTTCG
1 GTCATTTTACCTTATAGGGGTATTTCG
37824928 GTCATTT
1 GTCATTT
37824935 AATGACCTCT
Statistics
Matches: 144, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
26 6 0.04
27 129 0.90
28 9 0.06
ACGTcount: A:0.20, C:0.15, G:0.21, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCTTATAGGGGTATTTCG
Found at i:37842479 original size:6 final size:6
Alignment explanation
Indices: 37842430--37842471 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
37842420 TCATTTTAAA
* * *
37842430 ATTTTT ATTCTT AGTTTT CTTTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
37842472 TTCATTTTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (6 bp):
ATTTTT
Found at i:37842493 original size:27 final size:26
Alignment explanation
Indices: 37842444--37842498 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
37842434 TTATTCTTAG
* * *
37842444 TTTTCTTTTTATTTTTATTTTTATTT
1 TTTTCTTTTTATCTTTATCTTTAATT
*
37842470 TTTTCATTTTTATCTTTGTCTTTAATT
1 TTTTC-TTTTTATCTTTATCTTTAATT
37842497 TT
1 TT
37842499 AATTTTAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.13, C:0.07, G:0.02, T:0.78
Consensus pattern (26 bp):
TTTTCTTTTTATCTTTATCTTTAATT
Found at i:37842518 original size:5 final size:6
Alignment explanation
Indices: 37842490--37842520 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
37842480 TATCTTTGTC
37842490 TTTAAT TTTAAT TTTAAT TTTAA- TTTAAT TT
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TT
37842521 GTTTATGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTAAT
Found at i:37845796 original size:25 final size:25
Alignment explanation
Indices: 37845767--37845816 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
37845757 TTAAAAGGGG
37845767 TAAGGCATTTCGCATGAATTTTTAA
1 TAAGGCATTTCGCATGAATTTTTAA
* *
37845792 TAAGGCATTTTGGATGAATTTTTAA
1 TAAGGCATTTCGCATGAATTTTTAA
37845817 AGTCTGTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (25 bp):
TAAGGCATTTCGCATGAATTTTTAA
Found at i:37850664 original size:109 final size:109
Alignment explanation
Indices: 37850459--37850706 Score: 300
Period size: 109 Copynumber: 2.3 Consensus size: 109
37850449 TCGTGACAAC
* * * * * ** *
37850459 AGTATATTGCATAAAACCATAGATGAAAGACACTATGGTAGTCTGGTATGAGGTATGTAGTGTAA
1 AGTATATGGCGTAAGACCATAGATGAAAGACACTATGATAGTCTGGTATGAGGAACATAGCGTAA
* * *
37850524 GACCATGGATGAAAGATGTCATTGCAGCATGGTACAAGGTATAA
66 GACCATGGATGAAAGACGCCATTGCAACATGGTACAAGGTATAA
* * *
37850568 GGTATATGGCGTAAGAGCATAGATGAAAGACACTATGATAGTTTGGTATGAGGAACATAGCGTAA
1 AGTATATGGCGTAAGACCATAGATGAAAGACACTATGATAGTCTGGTATGAGGAACATAGCGTAA
* **
37850633 GACCATGGATGAAATACGCCA-TGACAACATGGTACGGGGTATAA
66 GACCATGGATGAAAGACGCCATTG-CAACATGGTACAAGGTATAA
* * *
37850677 AGTATATGGTGTAAGACCATAAATAAAAGA
1 AGTATATGGCGTAAGACCATAGATGAAAGA
37850707 TTCTATGACG
Statistics
Matches: 116, Mismatches: 22, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
108 2 0.02
109 114 0.98
ACGTcount: A:0.38, C:0.11, G:0.26, T:0.24
Consensus pattern (109 bp):
AGTATATGGCGTAAGACCATAGATGAAAGACACTATGATAGTCTGGTATGAGGAACATAGCGTAA
GACCATGGATGAAAGACGCCATTGCAACATGGTACAAGGTATAA
Found at i:37850869 original size:33 final size:33
Alignment explanation
Indices: 37850825--37850930 Score: 113
Period size: 33 Copynumber: 3.2 Consensus size: 33
37850815 TATGGCATCC
* * * *
37850825 ACAAAGATAGTCTGCTGGGACAGTAAACACATA
1 ACAAAGATAGTCCGCTAGGACAATAAACACAGA
* * *
37850858 ATAAAGATAGTCCGCTAGGATAATAAACATAGA
1 ACAAAGATAGTCCGCTAGGACAATAAACACAGA
* * * *
37850891 ACAAAGATAGTCCACTAGGATAGTAAACATAGA
1 ACAAAGATAGTCCGCTAGGACAATAAACACAGA
37850924 ACAAAGA
1 ACAAAGA
37850931 CAGTTTTTCA
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 63 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (33 bp):
ACAAAGATAGTCCGCTAGGACAATAAACACAGA
Found at i:37857341 original size:28 final size:28
Alignment explanation
Indices: 37857301--37857356 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
37857291 TTCTCAGAGG
37857301 TAGAGGCGATCCCAATACGAAATCCATC
1 TAGAGGCGATCCCAATACGAAATCCATC
37857329 TAGAGGCGATCCCAATACGAAATCCATC
1 TAGAGGCGATCCCAATACGAAATCCATC
37857357 ATAACATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.29, G:0.18, T:0.18
Consensus pattern (28 bp):
TAGAGGCGATCCCAATACGAAATCCATC
Found at i:37865903 original size:22 final size:22
Alignment explanation
Indices: 37865875--37865921 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
37865865 TTTGGTGATT
37865875 ACTCTAAAGCGAACACCGTCTA
1 ACTCTAAAGCGAACACCGTCTA
37865897 ACTCTAAAGCGAACACCGTCTA
1 ACTCTAAAGCGAACACCGTCTA
37865919 ACT
1 ACT
37865922 AACATTTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.36, C:0.32, G:0.13, T:0.19
Consensus pattern (22 bp):
ACTCTAAAGCGAACACCGTCTA
Found at i:37879752 original size:8 final size:8
Alignment explanation
Indices: 37879739--37879789 Score: 102
Period size: 8 Copynumber: 6.4 Consensus size: 8
37879729 AATATTAACT
37879739 AAATTCAA
1 AAATTCAA
37879747 AAATTCAA
1 AAATTCAA
37879755 AAATTCAA
1 AAATTCAA
37879763 AAATTCAA
1 AAATTCAA
37879771 AAATTCAA
1 AAATTCAA
37879779 AAATTCAA
1 AAATTCAA
37879787 AAA
1 AAA
37879790 AAGAAAAAGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 43 1.00
ACGTcount: A:0.65, C:0.12, G:0.00, T:0.24
Consensus pattern (8 bp):
AAATTCAA
Found at i:37879796 original size:24 final size:24
Alignment explanation
Indices: 37879744--37879797 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
37879734 TAACTAAATT
**
37879744 CAAAAATTCAAAAATTCAAAAATT
1 CAAAAATTCAAAAATTCAAAAAAA
37879768 CAAAAATTCAAAAATTCAAAAAAA
1 CAAAAATTCAAAAATTCAAAAAAA
*
37879792 GAAAAA
1 CAAAAA
37879798 GAAAAGAAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.69, C:0.11, G:0.02, T:0.19
Consensus pattern (24 bp):
CAAAAATTCAAAAATTCAAAAAAA
Found at i:37885624 original size:30 final size:30
Alignment explanation
Indices: 37885588--37885714 Score: 127
Period size: 30 Copynumber: 4.3 Consensus size: 30
37885578 GTTGTCCCAA
37885588 CCCTTTTCATAGCTTGATAGCTGAAGCTAT
1 CCCTTTTCATAGCTTGATAGCTGAAGCTAT
* *
37885618 CCCTTTTCATAGCTCGATAGCCGAAGCTAT
1 CCCTTTTCATAGCTTGATAGCTGAAGCTAT
* * *
37885648 CCCTTTTCATTG-TTGAT-G-TCGTCA-CCAT
1 CCCTTTTCATAGCTTGATAGCT-G-AAGCTAT
** * *
37885676 CCCTTTTCATAATTTGATCGCAGAAGCTAT
1 CCCTTTTCATAGCTTGATAGCTGAAGCTAT
37885706 CCCTTTTCA
1 CCCTTTTCA
37885715 CAATTCTATA
Statistics
Matches: 79, Mismatches: 12, Indels: 12
0.77 0.12 0.12
Matches are distributed among these distances:
28 15 0.19
29 11 0.14
30 53 0.67
ACGTcount: A:0.21, C:0.28, G:0.14, T:0.37
Consensus pattern (30 bp):
CCCTTTTCATAGCTTGATAGCTGAAGCTAT
Found at i:37885706 original size:88 final size:89
Alignment explanation
Indices: 37885573--37885837 Score: 322
Period size: 88 Copynumber: 3.0 Consensus size: 89
37885563 AATAAAATCA
* * ** * **
37885573 CGATGGTTGTC-CCAACCCTTTTCATAGCTTGATAGCTGAAGCTATCCCTTTTCATAGCTCGATA
1 CGATGGTCGTCACCATCCCTTTTCATAATTTGATAGCAGAAGCTATCCCTTTTCATAATTC-ATA
37885637 GCCGAAGCTATCCCTTTTCATTGTT
65 GCCGAAGCTATCCCTTTTCATTGTT
* *
37885662 -GAT-GTCGTCACCATCCCTTTTCATAATTTGATCGCAGAAGCTATCCCTTTTCACAATTCTATA
1 CGATGGTCGTCACCATCCCTTTTCATAATTTGATAGCAGAAGCTATCCCTTTTCATAATTC-ATA
* * *
37885725 GCCAAAGCCATCCATTTTCATTGTT
65 GCCGAAGCTATCCCTTTTCATTGTT
* * *
37885750 CGATGGTCGTCACCATCCCTTCTCATAATTTGATAGCCA-AGGCTATCCCTTTTCATTATTTTCA
1 CGATGGTCGTCACCATCCCTTTTCATAATTTGATAG-CAGAAGCTATCCCTTTTCA-TA-ATTCA
37885814 TAGCCGAAGCTATCCCTTTTCATT
63 TAGCCGAAGCTATCCCTTTTCATT
37885838 AGCCGATGAT
Statistics
Matches: 149, Mismatches: 21, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
87 5 0.03
88 69 0.46
89 3 0.02
90 44 0.30
91 25 0.17
92 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.14, T:0.37
Consensus pattern (89 bp):
CGATGGTCGTCACCATCCCTTTTCATAATTTGATAGCAGAAGCTATCCCTTTTCATAATTCATAG
CCGAAGCTATCCCTTTTCATTGTT
Found at i:37885800 original size:30 final size:30
Alignment explanation
Indices: 37885764--37885836 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 30
37885754 GGTCGTCACC
* *
37885764 ATCCCTTCTCATAATTTGATAGCC-AAGGCT
1 ATCCCTTTTCATAATTTCATAGCCGAA-GCT
*
37885794 ATCCCTTTTCATTATTTTCATAGCCGAAGCT
1 ATCCCTTTTCA-TAATTTCATAGCCGAAGCT
37885825 ATCCCTTTTCAT
1 ATCCCTTTTCAT
37885837 TAGCCGATGA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 11 0.29
31 25 0.66
32 2 0.05
ACGTcount: A:0.23, C:0.27, G:0.10, T:0.40
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTCATAGCCGAAGCT
Found at i:37895276 original size:546 final size:546
Alignment explanation
Indices: 37893645--37895276 Score: 3183
Period size: 546 Copynumber: 3.0 Consensus size: 546
37893635 ATTTTTTTTA
*
37893645 AGAAATAAACTACAACTCAACTCCAAAATCACTGTCTTTTGGGGGAGTTGATGTTTCAAGCTGTT
1 AGAAATAAAATACAACTCAACTCCAAAATCACTGTCTTTTGGGGGAGTTGATGTTTCAAGCTGTT
*
37893710 CTATCATTGGTCGAGCATCTAGAACTTTTTCAACAATGATATTTTTCTTGTATGAGCAGGTTTTG
66 CTATCATTGGTCGGGCATCTAGAACTTTTTCAACAATGATATTTTTCTTGTATGAGCAGGTTTTG
37893775 TACTTTTTTGAAAACCCAACATCTTTACCTCCTCTTTTTTGTTAGTTGTGGCTTCCCACTAGTGT
131 TACTTTTTTGAAAACCCAACATCTTTACCTCCTCTTTTTTGTTAGTTGTGGCTTCCCACTAGTGT
37893840 TCCTTTCTTGAATGCCTTCCCTTCTGTGTCTATCAAGGTTGAAAAGAACATTGAATTTACAATTT
196 TCCTTTCTTGAATGCCTTCCCTTCTGTGTCTATCAAGGTTGAAAAGAACATTGAATTTACAATTT
37893905 ATGGTCTTTGTCAATAGGTTCAATCGGATGATTTGTTTGGGCAACAAATAATAAGAATTTAGAGG
261 ATGGTCTTTGTCAATAGGTTCAATCGGATGATTTGTTTGGGCAACAAATAATAAGAATTTAGAGG
37893970 TGAAACCATCCTACTTTCTTATTTTCATCTATTATGAGTTGGCTTAATTCTGTGAGTGAATTAGT
326 TGAAACCATCCTACTTTCTTATTTTCATCTATTATGAGTTGGCTTAATTCTGTGAGTGAATTAGT
37894035 TATGGGCAAACTACAAAAATAGTCACTTTTTTTTGCCTCAGATTACATTTTAGTCACTTATGTTT
391 TATGGGCAAACTACAAAAATAGTCACTTTTTTTTGCCTCAGATTACATTTTAGTCACTTATGTTT
37894100 GAAATGTTACGTTTTAGTCACTTACGTTATCATTTTGTTACGAAATGGTCACTCTACCATTGAAC
456 GAAATGTTACGTTTTAGTCACTTACGTTATCATTTTGTTACGAAATGGTCACTCTACCATTGAAC
*
37894165 TCCATTACCTCCCTAATGGGTTTCTT
521 TCCATTACCTCCCTAATGGTTTTCTT
*
37894191 AGAAATAAAATACAACTCAACTCCAAAATCACTGTCTTTTGGGGGAGCTGATGTTTCAAGCTGTT
1 AGAAATAAAATACAACTCAACTCCAAAATCACTGTCTTTTGGGGGAGTTGATGTTTCAAGCTGTT
37894256 CTATCATTGGTCGGGCATCTAGAACTTTTTCAACAATGATATTTTTCTTGTATGAGCAGGTTTTG
66 CTATCATTGGTCGGGCATCTAGAACTTTTTCAACAATGATATTTTTCTTGTATGAGCAGGTTTTG
37894321 TACTTTTTTGAAAACCCAACATCTTTACCTCCTCTTTTTTGTTAGTTGTGGCTTCCCACTAGTGT
131 TACTTTTTTGAAAACCCAACATCTTTACCTCCTCTTTTTTGTTAGTTGTGGCTTCCCACTAGTGT
37894386 TCCTTTCTTGAATGCCTTCCCTTCTGTGTCTATCAAGGTTGAAAAGAACATTGAATTTACAATTT
196 TCCTTTCTTGAATGCCTTCCCTTCTGTGTCTATCAAGGTTGAAAAGAACATTGAATTTACAATTT
37894451 ATGGTCTTTGTCAATAGGTTCAATCGGATGATTTGTTTGGGCAACAAATAATAAGAATTTAGAGG
261 ATGGTCTTTGTCAATAGGTTCAATCGGATGATTTGTTTGGGCAACAAATAATAAGAATTTAGAGG
37894516 TGAAACCATCCTACTTTCTTATTTTCATCTATTATGAGTTGGCTTAATTCTGTGAGTGAATTAGT
326 TGAAACCATCCTACTTTCTTATTTTCATCTATTATGAGTTGGCTTAATTCTGTGAGTGAATTAGT
37894581 TATGGGCAAACTACAAAAATAGTCACTTTTTTTTGCCTCAGATTACATTTTAGTCACTTATGTTT
391 TATGGGCAAACTACAAAAATAGTCACTTTTTTTTGCCTCAGATTACATTTTAGTCACTTATGTTT
37894646 GAAATGTTACGTTTTAGTCACTTACGTTATCATTTTGTTACGAAATGGTCACTCTACCATTGAAC
456 GAAATGTTACGTTTTAGTCACTTACGTTATCATTTTGTTACGAAATGGTCACTCTACCATTGAAC
37894711 TCCATTACCTCCCTAATGGTTTTCTT
521 TCCATTACCTCCCTAATGGTTTTCTT
37894737 AGAAATAAAATACAACTCAACTCCAAAATCACTGTCTTTTGGGGGAGTTGATGTTTCAAGCTGTT
1 AGAAATAAAATACAACTCAACTCCAAAATCACTGTCTTTTGGGGGAGTTGATGTTTCAAGCTGTT
37894802 CTATCATTGGTCGGGCATCTAGAACTTTTTCAACAATGATATTTTTCTTGTATGAGCAGGTTTTG
66 CTATCATTGGTCGGGCATCTAGAACTTTTTCAACAATGATATTTTTCTTGTATGAGCAGGTTTTG
* *
37894867 TACTTTTTTGAAAACCCAACATCTTTACCTCCTCTTTTTTGTTAGTTGCGGCTTCCTACTAGTGT
131 TACTTTTTTGAAAACCCAACATCTTTACCTCCTCTTTTTTGTTAGTTGTGGCTTCCCACTAGTGT
37894932 TCCTTTCTTGAATGCCTTCCCTTCTGTGTCTATCAAGGTTGAAAAGAACATTGAATTTACAATTT
196 TCCTTTCTTGAATGCCTTCCCTTCTGTGTCTATCAAGGTTGAAAAGAACATTGAATTTACAATTT
37894997 ATGGTCTTTGTCAATAGGTTCAATCGGATGATTTGTTTGGGCAACAAATAATAAGAATTTAGAGG
261 ATGGTCTTTGTCAATAGGTTCAATCGGATGATTTGTTTGGGCAACAAATAATAAGAATTTAGAGG
37895062 TGAAACCATCCTACTTTCTTATTTTCATCTATTATGAGTTGGCTTAATTCTGTGAGTGAATTAGT
326 TGAAACCATCCTACTTTCTTATTTTCATCTATTATGAGTTGGCTTAATTCTGTGAGTGAATTAGT
*
37895127 TATGGGCAAACTACAAAAATAGTCACTTTTTTTTGCCTCAGATTATATTTTAGTCACTTATGTTT
391 TATGGGCAAACTACAAAAATAGTCACTTTTTTTTGCCTCAGATTACATTTTAGTCACTTATGTTT
* *
37895192 GAAATGTTACGTTTTAGTCACTTACGTTATCATTTTGTTACGAAGTGGTCACTCTACCGTTGAAC
456 GAAATGTTACGTTTTAGTCACTTACGTTATCATTTTGTTACGAAATGGTCACTCTACCATTGAAC
37895257 TCCATTACCTCCCTAATGGT
521 TCCATTACCTCCCTAATGGT
37895277 AGTCCTACGT
Statistics
Matches: 1076, Mismatches: 10, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
546 1076 1.00
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (546 bp):
AGAAATAAAATACAACTCAACTCCAAAATCACTGTCTTTTGGGGGAGTTGATGTTTCAAGCTGTT
CTATCATTGGTCGGGCATCTAGAACTTTTTCAACAATGATATTTTTCTTGTATGAGCAGGTTTTG
TACTTTTTTGAAAACCCAACATCTTTACCTCCTCTTTTTTGTTAGTTGTGGCTTCCCACTAGTGT
TCCTTTCTTGAATGCCTTCCCTTCTGTGTCTATCAAGGTTGAAAAGAACATTGAATTTACAATTT
ATGGTCTTTGTCAATAGGTTCAATCGGATGATTTGTTTGGGCAACAAATAATAAGAATTTAGAGG
TGAAACCATCCTACTTTCTTATTTTCATCTATTATGAGTTGGCTTAATTCTGTGAGTGAATTAGT
TATGGGCAAACTACAAAAATAGTCACTTTTTTTTGCCTCAGATTACATTTTAGTCACTTATGTTT
GAAATGTTACGTTTTAGTCACTTACGTTATCATTTTGTTACGAAATGGTCACTCTACCATTGAAC
TCCATTACCTCCCTAATGGTTTTCTT
Found at i:37908098 original size:56 final size:50
Alignment explanation
Indices: 37908026--37908272 Score: 217
Period size: 50 Copynumber: 4.8 Consensus size: 50
37908016 ATTTGGGTAA
* * *
37908026 AGAGATCCCATGTAAGACCATGTCTGGGACATGTCATTGGCATGATTGAGGTTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACG---GA-G--ATG
* * *
37908082 AGAGGTCCCATGTAAGACTATGTCTGAGACATGGCGTTGGCACGGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGGAGATG
* * * * *
37908132 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATAGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGGAGATG
** * * * * * * *
37908182 AGAACTCCCATGTAAGACCATATCTGGGATATGCCATTGACA-GTACAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGGAGATG
* ** *
37908231 AAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
37908273 TGTTATTATC
Statistics
Matches: 156, Mismatches: 35, Indels: 7
0.79 0.18 0.04
Matches are distributed among these distances:
49 37 0.24
50 78 0.50
52 1 0.01
53 2 0.01
56 38 0.24
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGGAGATG
Found at i:37917244 original size:50 final size:49
Alignment explanation
Indices: 37917133--37917311 Score: 202
Period size: 50 Copynumber: 3.6 Consensus size: 49
37917123 GGTAAAGAGA
* **
37917133 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAC-GATATGAGAAC
* * *
37917183 TCCCCCT-TAAGACCATGTCTCGGACATGGCATAGGCACCGATATGAGAAC
1 T-CCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGATATGAGAAC
* * **
37917233 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA-G-TACAAGAAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGATATGAG-AAC
37917281 ATCCCATGTAAGACCATGTCTGGGACATGGC
1 -TCCCATGTAAGACCATGTCTGGGACATGGC
37917312 TTTGACATTT
Statistics
Matches: 109, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
47 4 0.04
48 4 0.04
49 32 0.29
50 64 0.59
51 5 0.05
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (49 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGATATGAGAAC
Found at i:37918688 original size:2 final size:2
Alignment explanation
Indices: 37918681--37918705 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
37918671 ATTGTAGAAG
37918681 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
37918706 GTGGGGAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37920151 original size:43 final size:43
Alignment explanation
Indices: 37920083--37920363 Score: 180
Period size: 43 Copynumber: 6.5 Consensus size: 43
37920073 TCGCCTTGTT
** * * *
37920083 TGATGATGCACTACATGTGTTAGTATATTTCTTTTGGTTTATT
1 TGATGATGCACTATGTGTGCTAGTATATTGCTTTTGGTTTATC
* * * *
37920126 TGATGATGTACTGTGTGTGCCAGTATAGTTGC-TTTAGTTTATC
1 TGATGATGCACTATGTGTGCTAGTATA-TTGCTTTTGGTTTATC
* * ** * * *
37920169 TGATGATGCGCTGTGTGTGCTAACATAATTGC-TTTAGCTTGTC
1 TGATGATGCACTATGTGTGCTAGTAT-ATTGCTTTTGGTTTATC
* * * * *
37920212 CGATGATGCACTATGTGTGCTAGTATATTTCCTTCGATTTATC
1 TGATGATGCACTATGTGTGCTAGTATATTGCTTTTGGTTTATC
* * * *
37920255 TTATGATGCACTATGTGTGCTTA-TACAATTGCTTCT-ATTTAT-
1 TGATGATGCACTATGTGTGC-TAGTA-TATTGCTTTTGGTTTATC
* * *
37920297 TCGATGATGCATTGTGTGTGCCAGTATAATT--TTTGTGGTTTATC
1 T-GATGATGCACTATGTGTGCTAGTAT-ATTGCTTT-TGGTTTATC
* *
37920341 TGATAATGTACTATGTGTGCTAG
1 TGATGATGCACTATGTGTGCTAG
37920364 ACATCGTAAA
Statistics
Matches: 181, Mismatches: 46, Indels: 22
0.73 0.18 0.09
Matches are distributed among these distances:
41 2 0.01
42 7 0.04
43 160 0.88
44 12 0.07
ACGTcount: A:0.21, C:0.13, G:0.22, T:0.44
Consensus pattern (43 bp):
TGATGATGCACTATGTGTGCTAGTATATTGCTTTTGGTTTATC
Found at i:37920327 original size:129 final size:129
Alignment explanation
Indices: 37920032--37920319 Score: 343
Period size: 129 Copynumber: 2.2 Consensus size: 129
37920022 ATTATACTTC
* **
37920032 AGTTTATCTGATGATGCATTGTGTGTGCCAACATAATTGCTTCGCCTTGTTTGATGATGCACTAC
1 AGTTTATCTGATGATGCATTGTGTGTGCCAACATAATTGCTTAGCCTTGTCCGATGATGCACTAC
* * * * * * * *
37920097 ATGTGTTAGTATATTTCTTTTGGTTTATTTGATGATGTACTGTGTGTGCCAGTATAGTTGCTTT
66 ATGTGCTAGTATATTTCCTTCGATTTATTTGATGATGCACTATGTGTGCCAGTACAATTGCTTT
** *
37920161 AGTTTATCTGATGATGCGCTGTGTGTGCTAACATAATTGCTTTAG-CTTGTCCGATGATGCACTA
1 AGTTTATCTGATGATGCATTGTGTGTGCCAACATAATTGC-TTAGCCTTGTCCGATGATGCACTA
** *
37920225 TGTGTGCTAGTATATTTCCTTCGATTTATCTT-ATGATGCACTATGTGTGCTTA-TACAATTGCT
65 CATGTGCTAGTATATTTCCTTCGATTTAT-TTGATGATGCACTATGTGTGC-CAGTACAATTGCT
37920288 TCT
128 T-T
37920291 A-TTTAT-TCGATGATGCATTGTGTGTGCCA
1 AGTTTATCT-GATGATGCATTGTGTGTGCCA
37920320 GTATAATTTT
Statistics
Matches: 134, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
128 1 0.01
129 125 0.93
130 8 0.06
ACGTcount: A:0.20, C:0.15, G:0.22, T:0.43
Consensus pattern (129 bp):
AGTTTATCTGATGATGCATTGTGTGTGCCAACATAATTGCTTAGCCTTGTCCGATGATGCACTAC
ATGTGCTAGTATATTTCCTTCGATTTATTTGATGATGCACTATGTGTGCCAGTACAATTGCTTT
Found at i:37920339 original size:86 final size:85
Alignment explanation
Indices: 37920119--37920362 Score: 240
Period size: 86 Copynumber: 2.8 Consensus size: 85
37920109 ATTTCTTTTG
* * * * * * *
37920119 GTTTATTTGATGATGTACTGTGTGTGCCAGTATAGTTGCTTTAGTTTATCTGATGATGCGCTGTG
1 GTTTATTCGATGATGCACTGTGTGTGCCAGTATAATT-TTTTGGTTTATCTGATGATGCACTATG
*
37920184 TGTGCTAACATAATTGCTTTA
65 TGTGCTAACACAATTGCTTTA
* * * * * * * *
37920205 GCTTGTCCGATGATGCACTATGTGTGCTAGTAT-ATTTCCTTCGATTTATCTTATGATGCACTAT
1 GTTTATTCGATGATGCACTGTGTGTGCCAGTATAATTT--TTTGGTTTATCTGATGATGCACTAT
* *
37920269 GTGTGCTTATACAATTGCTTCTA
64 GTGTGCTAACACAATTGCTT-TA
* * *
37920292 -TTTATTCGATGATGCATTGTGTGTGCCAGTATAATTTTTGTGGTTTATCTGATAATGTACTATG
1 GTTTATTCGATGATGCACTGTGTGTGCCAGTATAATTTTT-TGGTTTATCTGATGATGCACTATG
37920356 TGTGCTA
65 TGTGCTA
37920363 GACATCGTAA
Statistics
Matches: 123, Mismatches: 30, Indels: 10
0.75 0.18 0.06
Matches are distributed among these distances:
85 4 0.03
86 113 0.92
87 6 0.05
ACGTcount: A:0.20, C:0.14, G:0.22, T:0.44
Consensus pattern (85 bp):
GTTTATTCGATGATGCACTGTGTGTGCCAGTATAATTTTTTGGTTTATCTGATGATGCACTATGT
GTGCTAACACAATTGCTTTA
Found at i:37921539 original size:140 final size:140
Alignment explanation
Indices: 37921236--37921802 Score: 994
Period size: 140 Copynumber: 4.1 Consensus size: 140
37921226 TTAGAAAAAG
* * * * *
37921236 AATTATATTCTTTCCAAATGAATATTAATTTCCATGTATGTTATATTTTGACTGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * * *
37921301 AATAACTGTTTACATTAATAAATTCGATAAAAATATATACAATTAATATTTTGTATGAATCAAAT
66 TATAACTGTTTATATTAATAAATTCGGT-AAAATATATACAATCAATATTTTGTATGAATCAAAT
37921366 TCATATATTTT
130 TCATATATTTT
*
37921377 AATTATATTCTTTCCAAAAGAATAGTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
37921442 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATCAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATCAATATTTTGTATGAATCAAATT
37921507 CATATATTTT
131 CATATATTTT
*
37921517 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
37921582 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATCAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATCAATATTTTGTATGAATCAAATT
37921647 CATATATTTT
131 CATATATTTT
* *
37921657 AATTATATTCTTTCCAAAAGAATATCAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
37921722 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATCAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATCAATATTTTGTATGAATCAAATT
37921787 CATATA--TT
131 CATATATTTT
37921795 AATTATAT
1 AATTATAT
37921803 CTATGTTTTT
Statistics
Matches: 411, Mismatches: 15, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
138 10 0.02
140 317 0.77
141 84 0.20
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.44
Consensus pattern (140 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATCAATATTTTGTATGAATCAAATT
CATATATTTT
Found at i:37928921 original size:707 final size:715
Alignment explanation
Indices: 37926976--37928949 Score: 3108
Period size: 723 Copynumber: 2.8 Consensus size: 715
37926966 TTGATCTTGT
* * *
37926976 GCCATTACCTATAGAAAATATATCTAGTTCAGATGGCGAGAAGAAAGCTGAGTTGGTGAAATCAA
1 GCCATTACCTATAGAAAATATTTCTAGTTTAGATGGCGAGAAGAAAGCTGAGTTTGTGAAATCAA
* * *
37927041 TGCACGAAAAGGCAAAACAATAGATTGCAAAAACAAATGACACAAATGCCAATAAAGCTAACAAG
66 TGCACGAAAAGGAAAAACAACAGATTGCAAAAACAAATGACACAAATGCCAACAAAGCTAACAAG
* *
37927106 GGGCGCAAACAAGTTATCCTTGAACCTGATGATTGGGTTTGGGTCCATATGCGCAAAGAGTGATT
131 GGGCACAAACAAGTTATCCTTGAAGCTGATGATTGGGTTTGGGTCCATATGCGCAAAGAGTGATT
* * *
37927171 TCTAAGTAAAAGGAGGACTAAATTGGACTCTAGGGGCGATAGGCCTTTCCAAGTACTCAAGTGGG
196 TCCAAGTAAAAGGAGGACTAAATTGGACCCTAGGGGCGATAGGCCTTTCCAAGTACTCAAGTGGA
37927236 TCAATGACAATGCCTATTAAATAGATCT-TCCCAGTGAGTACAATGTAAGTTCTACTTTTAATAT
261 TCAATGACAATGCCTATTAAATAGATCTGT--CAGTGAGTACAATGTAAGTTCTAC-TTTAATAT
* * * *
37927300 TGCTGATTTATCTCCCTTTGATGTTTCAGATCCAAGGACGAATCTTTTTGAGGAAGAGAGGAATG
323 TGCTGATTTATCTCCCTTTGATGTTTCAGATTCGAGGACGAATATTTTTGAGGAAGAGGGGAATG
* *
37927365 ATGCGAGTCTCAAGGCCCAAAATCAGGCTCATGAATGTGATGGGGTCAAATTTCCTCATGGCCCA
388 ATGCGAGTCTCAAGGCCCAAAATCAGTCTCATGAATGTGATGGGCTCAAATTTCCTCATGGCCCA
* * *
37927430 ATAAAAACGTCGAAGGCCAAGCAAATCCGAGCAAGATTGAATGGGAT-AGTCTAAGACTTCGTTA
453 ATAACAACGTCGAAGGCCAAGCAAATCTGAGCAAGATTGAATGGGATCA-TCCAAGACTTCGTTA
* * *
37927494 CCAAAGCCCTAGATGCTCACATGACTGAAACAGAAAATCAAGATTCACTTTCTTATTCTCAAGAA
517 CCAAGGCCCTAGATGCTCACATGACCGAAAAAGAAAATCAAGATTCACTTTCTTATTCTCAAGAA
* * *
37927559 AATCAAGAAACAAAATATTGGTCTAATTTTGTTCTTTCAAACAATTTCAAGAATCAAGATTTCAA
582 AATAAAGAAACAAAATATTGGTCCAATTTTGCTCTTTCAAACAATTTCAAGAATCAAG------A
**
37927624 ATCTTGGAAATCTTGGTTTAAGAAATCGAATCTTGCAGCCAAGGCGCATTGGATTTCATGTACGA
641 ATCTTGGAAATCTTGGTCCAAGAAATCGAATCTTGCAGCCAAGGCGCATTGGATTTCATGTACGA
37927689 GCTTGAACAA
706 GCTTGAACAA
*
37927699 TCCATTACCTATAGAAAATATTTCTAGTTTAGATGGCGAGAAGAAAGCTGAGTTTGTGAAATCAA
1 GCCATTACCTATAGAAAATATTTCTAGTTTAGATGGCGAGAAGAAAGCTGAGTTTGTGAAATCAA
* *
37927764 TGCACGAAAAGGAAAAACAACGGATTGCAAAAACAAATAACACAAATGCCAACAAAGCTAACAAG
66 TGCACGAAAAGGAAAAACAACAGATTGCAAAAACAAATGACACAAATGCCAACAAAGCTAACAAG
*
37927829 GGGCACAAACAAGTTATCCTTGAAGTTGATGATTGGGTTTGGGTCCATATGCGCAAAGAGTGATT
131 GGGCACAAACAAGTTATCCTTGAAGCTGATGATTGGGTTTGGGTCCATATGCGCAAAGAGTGATT
* * *
37927894 TCCGAGTAAAAGGAGGACTAAATTGGACCTTAGGGGCGATAGGCATTTCCAAGTACTCAAGTGGA
196 TCCAAGTAAAAGGAGGACTAAATTGGACCCTAGGGGCGATAGGCCTTTCCAAGTACTCAAGTGGA
*
37927959 TCAATGACAATGCCTATTAAATAGATCTGTCTAGTGAGTATAATGTAAGTTCTACATTTAATATT
261 TCAATGACAATGCCTATTAAATAGATCTGTC-AGTGAGTACAATGTAAGTTCTAC-TTTAATATT
37928024 GCTGATTTATCTCCCTTTGATGTTTCAGATTCGAGGACGAATATTTTTGAGGAAGAGGGGAATGA
324 GCTGATTTATCTCCCTTTGATGTTTCAGATTCGAGGACGAATATTTTTGAGGAAGAGGGGAATGA
* *
37928089 TGCGAGTCTCAAGGCCCAAAATCAGGT-TCATGAATGTGATGGGCTCGAATTTCCTCATGGTCCA
389 TGCGAGTCTCAAGGCCCAAAATCA-GTCTCATGAATGTGATGGGCTCAAATTTCCTCATGGCCCA
* * * ** * *
37928153 ATAACAACATCTAAGGCCAAACAAATCTGAGTGAGATTGAGTGGGATCGTCCAAGACTTCGTTAC
453 ATAACAACGTCGAAGGCCAAGCAAATCTGAGCAAGATTGAATGGGATCATCCAAGACTTCGTTAC
37928218 CAAGGCCCTAGATGCTCACATGACCGAAAAAGAAAATCAAGATTCACTTT-TT-TT-T-AAGAAA
518 CAAGGCCCTAGATGCTCACATGACCGAAAAAGAAAATCAAGATTCACTTTCTTATTCTCAAGAAA
* *
37928279 ATAAAGAAACCAAATATTGGTCCAATTTTGCTCTTTCAGACAATTTCAAGAATCAAG-AT-TT-G
583 ATAAAGAAACAAAATATTGGTCCAATTTTGCTCTTTCAAACAATTTCAAGAATCAAGAATCTTGG
*
37928341 AAATCTTGGTCCAAGAAATCGAATCTTGCAGCCAAGGCGCATTGGATTTCATGTATGAGCTTGAA
648 AAATCTTGGTCCAAGAAATCGAATCTTGCAGCCAAGGCGCATTGGATTTCATGTACGAGCTTGAA
37928406 CAA
713 CAA
* *
37928409 GCCATTACCTATAGAAAATATTTATAGTTTAGATGGCGAGAAGAAAGTTGAGTTTGTGAAATCAA
1 GCCATTACCTATAGAAAATATTTCTAGTTTAGATGGCGAGAAGAAAGCTGAGTTTGTGAAATCAA
* *
37928474 TACACGAAAAGGAAAAATAACAGATTGC-AAAA-AAATGACACAAATGCCAACAAAGCTAACAAG
66 TGCACGAAAAGGAAAAACAACAGATTGCAAAAACAAATGACACAAATGCCAACAAAGCTAACAAG
* * *
37928537 GGGCACAAACAAGTTATCCTTGAAGGTGATGGTTTGGTTTGGGTCCATATGCGCAAAGAGTGATT
131 GGGCACAAACAAGTTATCCTTGAAGCTGATGATTGGGTTTGGGTCCATATGCGCAAAGAGTGATT
* *
37928602 TCCAAGTATAAGGAGGACTAAATTGGACCCTAGGGGCGATAGGCCTTTCCAAGTACTCAAATGGA
196 TCCAAGTAAAAGGAGGACTAAATTGGACCCTAGGGGCGATAGGCCTTTCCAAGTACTCAAGTGGA
*
37928667 TCAATGACAATGCCTATTAAATAGGTCTGTCAGTGAGTACAATGTAAGTTCTACTTTGAATATTG
261 TCAATGACAATGCCTATTAAATAGATCTGTCAGTGAGTACAATGTAAGTTCTACTTT-AATATTG
* * * *
37928732 CTAATTTATCTCCCTTTGATGTTTAAGATTCGAGGACGAATGTTTTTTAGGAAGAGGGGAATGAT
325 CTGATTTATCTCCCTTTGATGTTTCAGATTCGAGGACGAATATTTTTGAGGAAGAGGGGAATGAT
* * * *
37928797 GCGAGTCTCAAGGCCCAAAATCAGTCTAATGAATGTGATAGGCTAAAAATTCCTCATGGCCCAAT
390 GCGAGTCTCAAGGCCCAAAATCAGTCTCATGAATGTGATGGGCTCAAATTTCCTCATGGCCCAAT
* * * *
37928862 AACAAGGTCGAAGGCCAAGTAAATCTGAGCAAGATTAAACGGGATCATCCAAGACTTCGTTACCA
455 AACAACGTCGAAGGCCAAGCAAATCTGAGCAAGATTGAATGGGATCATCCAAGACTTCGTTACCA
37928927 AGGCCCTAGATGCTCACATGACC
520 AGGCCCTAGATGCTCACATGACC
37928950 AAGTACTAGA
Statistics
Matches: 1158, Mismatches: 87, Indels: 28
0.91 0.07 0.02
Matches are distributed among these distances:
706 5 0.00
707 223 0.19
708 182 0.16
709 4 0.00
710 153 0.13
711 2 0.00
712 2 0.00
719 58 0.05
720 1 0.00
721 2 0.00
722 3 0.00
723 521 0.45
724 2 0.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.26
Consensus pattern (715 bp):
GCCATTACCTATAGAAAATATTTCTAGTTTAGATGGCGAGAAGAAAGCTGAGTTTGTGAAATCAA
TGCACGAAAAGGAAAAACAACAGATTGCAAAAACAAATGACACAAATGCCAACAAAGCTAACAAG
GGGCACAAACAAGTTATCCTTGAAGCTGATGATTGGGTTTGGGTCCATATGCGCAAAGAGTGATT
TCCAAGTAAAAGGAGGACTAAATTGGACCCTAGGGGCGATAGGCCTTTCCAAGTACTCAAGTGGA
TCAATGACAATGCCTATTAAATAGATCTGTCAGTGAGTACAATGTAAGTTCTACTTTAATATTGC
TGATTTATCTCCCTTTGATGTTTCAGATTCGAGGACGAATATTTTTGAGGAAGAGGGGAATGATG
CGAGTCTCAAGGCCCAAAATCAGTCTCATGAATGTGATGGGCTCAAATTTCCTCATGGCCCAATA
ACAACGTCGAAGGCCAAGCAAATCTGAGCAAGATTGAATGGGATCATCCAAGACTTCGTTACCAA
GGCCCTAGATGCTCACATGACCGAAAAAGAAAATCAAGATTCACTTTCTTATTCTCAAGAAAATA
AAGAAACAAAATATTGGTCCAATTTTGCTCTTTCAAACAATTTCAAGAATCAAGAATCTTGGAAA
TCTTGGTCCAAGAAATCGAATCTTGCAGCCAAGGCGCATTGGATTTCATGTACGAGCTTGAACAA
Found at i:37930153 original size:50 final size:50
Alignment explanation
Indices: 37930046--37930340 Score: 301
Period size: 50 Copynumber: 5.8 Consensus size: 50
37930036 ATTTGGGTAA
*
37930046 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAG---ATG
* *
37930102 AGAGGTACCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * *
37930152 AGAGGTCCCATGTAAGACCAAGTTTGGGAC--GGCGTTGGCACCTAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
37930200 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATC
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * * *
37930250 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA--GTACATA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* ** *
37930299 AAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
37930341 TGTTATTATC
Statistics
Matches: 203, Mismatches: 33, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
48 43 0.21
49 39 0.19
50 77 0.38
53 3 0.01
55 2 0.01
56 39 0.19
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:37930278 original size:98 final size:103
Alignment explanation
Indices: 37930051--37930291 Score: 278
Period size: 98 Copynumber: 2.3 Consensus size: 103
37930041 GGTAAAGAGA
* *
37930051 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTGAGATCATGAGAGGTACCATGTA
1 TCCCATGTAAGACCATATCTGGGACA-GGCATTGGCATCCTTGAGA--ATGAGAGGTACCACGTA
* * **
37930116 AGACCATGTCTAGGACATGGCATTGGCACCGAGATGAGAGG
63 AGACCATGTCTAGGACATGGCATGGGCACCGAGATCAGAAC
* * * *
37930157 TCCCATGTAAGACCA-AGTTTGGGAC-GGCGTTGGCA-CC-T-AG-ATGAGAGGTCCCCCGTAAG
1 TCCCATGTAAGACCATA-TCTGGGACAGGCATTGGCATCCTTGAGAATGAGAGGTACCACGTAAG
* *
37930216 ACCATGTCTGGGACATGGCATGGGCACCGATATCAGAAC
65 ACCATGTCTAGGACATGGCATGGGCACCGAGATCAGAAC
*
37930255 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCATGTAAGACCATATCTGGGACA-GGCATTGGCA
37930292 GTACATAAAA
Statistics
Matches: 116, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
98 70 0.60
99 1 0.01
100 9 0.08
101 2 0.02
102 1 0.01
103 2 0.02
104 9 0.08
106 22 0.19
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.22
Consensus pattern (103 bp):
TCCCATGTAAGACCATATCTGGGACAGGCATTGGCATCCTTGAGAATGAGAGGTACCACGTAAGA
CCATGTCTAGGACATGGCATGGGCACCGAGATCAGAAC
Found at i:37942257 original size:20 final size:20
Alignment explanation
Indices: 37942232--37942312 Score: 108
Period size: 20 Copynumber: 4.0 Consensus size: 20
37942222 TTGTACGGGA
37942232 TTGCACTTTGGTGCCTCTGT
1 TTGCACTTTGGTGCCTCTGT
*
37942252 TTGCACTTTGATGCCTCTGT
1 TTGCACTTTGGTGCCTCTGT
* * *
37942272 TAGCAATTTGGTGCCTCTGC
1 TTGCACTTTGGTGCCTCTGT
**
37942292 TTGCACTTCAGTGCCTCTGT
1 TTGCACTTTGGTGCCTCTGT
37942312 T
1 T
37942313 AGCATTTTGA
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.42
Consensus pattern (20 bp):
TTGCACTTTGGTGCCTCTGT
Found at i:37942296 original size:40 final size:40
Alignment explanation
Indices: 37942238--37942330 Score: 125
Period size: 40 Copynumber: 2.3 Consensus size: 40
37942228 GGGATTGCAC
* *
37942238 TTTGGTGCCTCTGTTTGCACTT-TGATGCCTCTGTTAGCAA
1 TTTGGTGCCTCTGCTTGCACTTCAG-TGCCTCTGTTAGCAA
*
37942278 TTTGGTGCCTCTGCTTGCACTTCAGTGCCTCTGTTAGCAT
1 TTTGGTGCCTCTGCTTGCACTTCAGTGCCTCTGTTAGCAA
*
37942318 TTTGATGCTCTCT
1 TTTGGTGC-CTCT
37942331 AGTGTGTTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
40 42 0.89
41 5 0.11
ACGTcount: A:0.11, C:0.25, G:0.22, T:0.43
Consensus pattern (40 bp):
TTTGGTGCCTCTGCTTGCACTTCAGTGCCTCTGTTAGCAA
Found at i:37953665 original size:28 final size:28
Alignment explanation
Indices: 37953634--37953703 Score: 104
Period size: 29 Copynumber: 2.5 Consensus size: 28
37953624 CTATGAATTA
*
37953634 TGAATGATTTTATATTTAGTTTAAGATT
1 TGAATGATTTTATATTTAGTTTAAGAGT
*
37953662 TGAATGGTTTTTATATTTAGTTTAAGAGT
1 TGAAT-GATTTTATATTTAGTTTAAGAGT
*
37953691 TGAATGGTTTTAT
1 TGAATGATTTTAT
37953704 GATGTTATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 12 0.32
29 26 0.68
ACGTcount: A:0.29, C:0.00, G:0.19, T:0.53
Consensus pattern (28 bp):
TGAATGATTTTATATTTAGTTTAAGAGT
Found at i:37953679 original size:29 final size:29
Alignment explanation
Indices: 37953641--37953701 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
37953631 TTATGAATGA
*
37953641 TTTTATATTTAGTTTAAGATTTGAATGGT
1 TTTTATATTTAGTTTAAGAGTTGAATGGT
37953670 TTTTATATTTAGTTTAAGAGTTGAATGGT
1 TTTTATATTTAGTTTAAGAGTTGAATGGT
37953699 TTT
1 TTT
37953702 ATGATGTTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.26, C:0.00, G:0.18, T:0.56
Consensus pattern (29 bp):
TTTTATATTTAGTTTAAGAGTTGAATGGT
Found at i:37962684 original size:20 final size:20
Alignment explanation
Indices: 37962659--37962697 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
37962649 ACTTAATTCC
37962659 AGTTTTCATAATTT-TTCAAA
1 AGTTTT-ATAATTTATTCAAA
*
37962679 AGTTTTATAGTTTATTCAA
1 AGTTTTATAATTTATTCAA
37962698 TTTAGTCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.51
Consensus pattern (20 bp):
AGTTTTATAATTTATTCAAA
Found at i:37967734 original size:101 final size:102
Alignment explanation
Indices: 37967609--37967804 Score: 272
Period size: 101 Copynumber: 1.9 Consensus size: 102
37967599 TCAAAGTTAT
* *
37967609 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACCTGTACT-GGAATGAT-A-GGTCGCATGTGT
1 GGTCACGTGTGTAGTACTACGTGCAGGCTACTACCTGT-CTCGG-ATGATAATGGTCACATGTGT
* * *
37967671 AGTACTATGTGCAGGCTACTATGCGTACCGAATAGTTTC
64 AGTACAATGTGCAGACTACTATGCGAACCGAATAGTTTC
* * *
37967710 GGTCACGTGTGTAGTACTACGTGCAGGCTACTACGTGTTTCGGATGGTAATGGTCACATGTGTAG
1 GGTCACGTGTGTAGTACTACGTGCAGGCTACTACCTGTCTCGGATGATAATGGTCACATGTGTAG
*
37967775 TACAATGTGCAGACTACTATGTGAACCGAA
66 TACAATGTGCAGACTACTATGCGAACCGAA
37967805 CATCATTGAT
Statistics
Matches: 83, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
100 5 0.06
101 39 0.47
102 39 0.47
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (102 bp):
GGTCACGTGTGTAGTACTACGTGCAGGCTACTACCTGTCTCGGATGATAATGGTCACATGTGTAG
TACAATGTGCAGACTACTATGCGAACCGAATAGTTTC
Found at i:37967742 original size:51 final size:50
Alignment explanation
Indices: 37967609--37967793 Score: 178
Period size: 51 Copynumber: 3.7 Consensus size: 50
37967599 TCAAAGTTAT
*
37967609 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACCTGTACTGGAATGATA
1 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACCTGTACTCGAATGATA
* * * * *
37967659 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGC-GTAC-CGAATAGTTTC
1 GGTCACGTGTGTAGTACTATGTGCAGGCTACTA-CCTGTACTCGAAT-G-ATA
* * * * *
37967710 GGTCACGTGTGTAGTACTACGTGCAGGCTACTACGTGT-TTCGGATGGTAA
1 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACCTGTACTCGAATGAT-A
* * *
37967760 TGGTCACATGTGTAGTACAATGTGCAGACTACTA
1 -GGTCACGTGTGTAGTACTATGTGCAGGCTACTA
37967794 TGTGAACCGA
Statistics
Matches: 109, Mismatches: 19, Indels: 13
0.77 0.13 0.09
Matches are distributed among these distances:
49 5 0.05
50 37 0.34
51 67 0.61
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (50 bp):
GGTCACGTGTGTAGTACTATGTGCAGGCTACTACCTGTACTCGAATGATA
Found at i:37967855 original size:45 final size:45
Alignment explanation
Indices: 37967799--37967889 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
37967789 TACTATGTGA
* * *
37967799 ACCGAACATCATTGATTAGTAAGGTGGTTGGTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
*
37967844 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
37967889 A
1 A
37967890 TCGAGTATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:37979440 original size:71 final size:72
Alignment explanation
Indices: 37979310--37979452 Score: 279
Period size: 72 Copynumber: 2.0 Consensus size: 72
37979300 GAGAAGGAAG
37979310 TTAATAAAAAAACTAAACTAATTTACGAAATAGTATAAAAGCATTTTCTCATTGCTTACACAGAG
1 TTAATAAAAAAACTAAACTAATTTACGAAATAGTATAAAAGCATTTTCTCATTGCTTACACAGAG
37979375 ATTTGAA
66 ATTTGAA
37979382 TTAATAAAAAAACTAAACTAATTTACGAAATAGTATAAAAG-ATTTTCTCATTGCTTACACAGAG
1 TTAATAAAAAAACTAAACTAATTTACGAAATAGTATAAAAGCATTTTCTCATTGCTTACACAGAG
37979446 ATTTGAA
66 ATTTGAA
37979453 CACAAGACCT
Statistics
Matches: 71, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
71 30 0.42
72 41 0.58
ACGTcount: A:0.46, C:0.12, G:0.10, T:0.32
Consensus pattern (72 bp):
TTAATAAAAAAACTAAACTAATTTACGAAATAGTATAAAAGCATTTTCTCATTGCTTACACAGAG
ATTTGAA
Found at i:37983033 original size:20 final size:20
Alignment explanation
Indices: 37983003--37983049 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
37982993 ATTCTATCTT
37983003 TTTCT-ATAAGTTCTAAGTA
1 TTTCTGATAAGTTCTAAGTA
*
37983022 TTTCTGATAAGTTTTAAGTA
1 TTTCTGATAAGTTCTAAGTA
37983042 TTTCTGAT
1 TTTCTGAT
37983050 TTAGTCCCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.28, C:0.09, G:0.13, T:0.51
Consensus pattern (20 bp):
TTTCTGATAAGTTCTAAGTA
Found at i:37986931 original size:45 final size:46
Alignment explanation
Indices: 37986880--37987063 Score: 128
Period size: 46 Copynumber: 4.1 Consensus size: 46
37986870 CAGGTGAAAG
* ** * *
37986880 TAATAGTGCATGGTTACC-CATTTCGTTTAACCTACACAAATCTAA
1 TAATAGTGCATGGTCACCTCATAGCGTTAAACCTACACAAATCAAA
* * * *
37986925 TAATAGTACCTGGTCACCTGATAGGGTTAAACCTACACAAATCAAA
1 TAATAGTGCATGGTCACCTCATAGCGTTAAACCTACACAAATCAAA
* * * ** * *
37986971 TAATAGTGCTTGGTCA-CTCGTTAGGGTTAAACCTACATGATTCGAA
1 TAATAGTGCATGGTCACCTC-ATAGCGTTAAACCTACACAAATCAAA
* * *
37987017 TAACAGTGTC-TAGTCACC-CATTAGGGTTAAACCTACAC-AA-CAAA
1 TAATAGTG-CATGGTCACCTCA-TAGCGTTAAACCTACACAAATCAAA
37987061 TAA
1 TAA
37987064 CCTAGCTAGG
Statistics
Matches: 111, Mismatches: 23, Indels: 11
0.77 0.16 0.08
Matches are distributed among these distances:
44 6 0.05
45 18 0.16
46 85 0.77
47 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.28
Consensus pattern (46 bp):
TAATAGTGCATGGTCACCTCATAGCGTTAAACCTACACAAATCAAA
Found at i:37986958 original size:46 final size:46
Alignment explanation
Indices: 37986908--37987063 Score: 158
Period size: 46 Copynumber: 3.4 Consensus size: 46
37986898 CATTTCGTTT
* *
37986908 AACCTACACAAATCTAATAATAGTACCTGGTCACCTGATAGGGTTA
1 AACCTACACAAATCAAATAATAGTGCCTGGTCACCTGATAGGGTTA
* *
37986954 AACCTACACAAATCAAATAATAGTGCTTGGTCA-CTCGTTAGGGTTA
1 AACCTACACAAATCAAATAATAGTGCCTGGTCACCT-GATAGGGTTA
** * * * * * *
37987000 AACCTACATGATTCGAATAACAGTGTCTAGTCACC-CATTAGGGTTA
1 AACCTACACAAATCAAATAATAGTGCCTGGTCACCTGA-TAGGGTTA
37987046 AACCTACAC-AA-CAAATAA
1 AACCTACACAAATCAAATAA
37987064 CCTAGCTAGG
Statistics
Matches: 90, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
44 6 0.07
45 3 0.03
46 80 0.89
47 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.26
Consensus pattern (46 bp):
AACCTACACAAATCAAATAATAGTGCCTGGTCACCTGATAGGGTTA
Found at i:37989246 original size:40 final size:40
Alignment explanation
Indices: 37989187--37989333 Score: 188
Period size: 40 Copynumber: 3.7 Consensus size: 40
37989177 GTGCCCAGAA
* *
37989187 GAGCCATACCTACTAAATCTACTGAAACGTATGTG-TTTT
1 GAGCCATACCTACTGAATCTACTGAAATGTATGTGCTTTT
* * * *
37989226 CGAGGCATACTTACTGAATCTATTGAAATGTATGCGCTTTT
1 -GAGCCATACCTACTGAATCTACTGAAATGTATGTGCTTTT
* * * *
37989267 GAGCCACACCTATTGAATCTAATAAAATGTATGTGCTTTT
1 GAGCCATACCTACTGAATCTACTGAAATGTATGTGCTTTT
37989307 GAGCCATACCTACTGAATCTACTGAAA
1 GAGCCATACCTACTGAATCTACTGAAA
37989334 AGATTGCTCT
Statistics
Matches: 89, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
40 85 0.96
41 4 0.04
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (40 bp):
GAGCCATACCTACTGAATCTACTGAAATGTATGTGCTTTT
Found at i:37989686 original size:18 final size:19
Alignment explanation
Indices: 37989657--37989692 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
37989647 GCTTGTATGC
*
37989657 TTAAGTTGAAATGAATGAT
1 TTAAGTTGAAATCAATGAT
37989676 TTAAG-TGAAATCAATGA
1 TTAAGTTGAAATCAATGA
37989693 CCCTATATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.44, C:0.03, G:0.19, T:0.33
Consensus pattern (19 bp):
TTAAGTTGAAATCAATGAT
Found at i:38000230 original size:51 final size:51
Alignment explanation
Indices: 38000154--38000288 Score: 182
Period size: 51 Copynumber: 2.6 Consensus size: 51
38000144 AAAGTTATGG
*
38000154 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-TTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAAT-GA
* * * * *
38000205 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGTAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAATGA
* *
38000256 TCACATGTATAGTACTATGTGCAGGCTACTATG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATG
38000289 TGAATCAAAC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
51 73 0.99
52 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (51 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAATGA
Found at i:38000348 original size:45 final size:45
Alignment explanation
Indices: 38000297--38000384 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
38000287 TGTGAATCAA
*
38000297 ACATCATT-AATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCAG
1 ACATCATTGAATTA-TAAGGTGGTTGCTATGTGCTGAATCCACCAG
*
38000342 ACATCATTGATTTATAAGGTGGTTGCTATGTGCTGAATCCACC
1 ACATCATTGAATTATAAGGTGGTTGCTATGTGCTGAATCCACC
38000385 GAGTATTTGT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
45 36 0.90
46 4 0.10
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (45 bp):
ACATCATTGAATTATAAGGTGGTTGCTATGTGCTGAATCCACCAG
Found at i:38003237 original size:20 final size:20
Alignment explanation
Indices: 38003208--38003251 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
38003198 GGTTGCAAAT
* *
38003208 CATAATAACAG-AGTTTAACA
1 CATAACAACAGTAGTATAA-A
38003228 CATAACAACAGTAGTATAAA
1 CATAACAACAGTAGTATAAA
38003248 CATA
1 CATA
38003252 TCTTAAACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.52, C:0.16, G:0.09, T:0.23
Consensus pattern (20 bp):
CATAACAACAGTAGTATAAA
Found at i:38011983 original size:17 final size:17
Alignment explanation
Indices: 38011958--38011996 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
38011948 ATAACATTAA
* *
38011958 AACATTATTTACTCTGT
1 AACACTATTTAATCTGT
38011975 AACACTATTTAATCTGT
1 AACACTATTTAATCTGT
38011992 AACAC
1 AACAC
38011997 CCCAAACCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.36, C:0.21, G:0.05, T:0.38
Consensus pattern (17 bp):
AACACTATTTAATCTGT
Found at i:38013643 original size:13 final size:13
Alignment explanation
Indices: 38013625--38013649 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38013615 TAAGGGAATA
38013625 AATAAAAATTAAG
1 AATAAAAATTAAG
38013638 AATAAAAATTAA
1 AATAAAAATTAA
38013650 ATGGCAACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (13 bp):
AATAAAAATTAAG
Found at i:38025003 original size:11 final size:11
Alignment explanation
Indices: 38024986--38025016 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
38024976 ATCAATCCAA
38024986 CACAAGCTTTG
1 CACAAGCTTTG
*
38024997 TACAAGCTTTG
1 CACAAGCTTTG
38025008 CACAAGCTT
1 CACAAGCTT
38025017 AAGCATCAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (11 bp):
CACAAGCTTTG
Found at i:38027951 original size:18 final size:19
Alignment explanation
Indices: 38027909--38027953 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
38027899 TCAAGATCTT
38027909 AAATTAATGTGGTCCAAAG
1 AAATTAATGTGGTCCAAAG
38027928 AAATTAATGTGGTCCAAA-
1 AAATTAATGTGGTCCAAAG
38027946 AAATTAAT
1 AAATTAAT
38027954 TAGTACATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 8 0.31
19 18 0.69
ACGTcount: A:0.47, C:0.09, G:0.16, T:0.29
Consensus pattern (19 bp):
AAATTAATGTGGTCCAAAG
Found at i:38031371 original size:27 final size:28
Alignment explanation
Indices: 38031341--38031402 Score: 108
Period size: 27 Copynumber: 2.2 Consensus size: 28
38031331 AAATATGTTG
*
38031341 AATAATAATAATACTTAT-ATCTTTAAT
1 AATAATAATAATACTTATAATATTTAAT
38031368 AATAATAATAATACTTATAATATTTAAT
1 AATAATAATAATACTTATAATATTTAAT
38031396 AATAATA
1 AATAATA
38031403 CAATAATAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 18 0.55
28 15 0.45
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (28 bp):
AATAATAATAATACTTATAATATTTAAT
Found at i:38031407 original size:27 final size:26
Alignment explanation
Indices: 38031332--38031407 Score: 84
Period size: 27 Copynumber: 2.8 Consensus size: 26
38031322 TAATAAAAAA
38031332 AATATGTTGAATAATAAT-AATACTTAT
1 AATAT-TT-AATAATAATAAATACTTAT
*
38031359 -ATCTTTAATAATAATAATAATACTTAT
1 AATATTTAATAATAAT-A-AATACTTAT
38031386 AATATTTAATAATAATACAATA
1 AATATTTAATAATAATA-AATA
38031408 ATAAAAATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
24 9 0.21
25 2 0.05
26 3 0.07
27 14 0.33
28 14 0.33
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (26 bp):
AATATTTAATAATAATAAATACTTAT
Found at i:38035599 original size:16 final size:16
Alignment explanation
Indices: 38035574--38035607 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
38035564 TTTACATAAA
*
38035574 ATAAACATTTGGTTAT
1 ATAAACATTTGCTTAT
*
38035590 ATAAATATTTGCTTAT
1 ATAAACATTTGCTTAT
38035606 AT
1 AT
38035608 TAAGTTGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (16 bp):
ATAAACATTTGCTTAT
Found at i:38039263 original size:2 final size:2
Alignment explanation
Indices: 38039256--38039280 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
38039246 TATTTAACTT
38039256 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
38039281 TATTAACATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:38041988 original size:18 final size:20
Alignment explanation
Indices: 38041948--38041994 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 20
38041938 AAATTTTAAC
* *
38041948 TTTTTTATATATTCTTTATA
1 TTTTTTAAATATTCTATATA
38041968 TTTTTTAAAT-TTCTATA-A
1 TTTTTTAAATATTCTATATA
38041986 TTTTTTAAA
1 TTTTTTAAA
38041995 ATCAATAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 10 0.40
19 6 0.24
20 9 0.36
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTTTTAAATATTCTATATA
Found at i:38042034 original size:18 final size:18
Alignment explanation
Indices: 38041970--38042046 Score: 59
Period size: 18 Copynumber: 4.2 Consensus size: 18
38041960 TCTTTATATT
*
38041970 TTTTAAATTTCTAT-AATT
1 TTTTAAATTT-TATAAATA
* **
38041988 TTTTAAAATCAATAAA-A
1 TTTTAAATTTTATAAATA
*
38042005 TTTGAAACTTTTATAAATA
1 TTTTAAA-TTTTATAAATA
*
38042024 TTTTAAATTTTAAAAATTA
1 TTTTAAATTTTATAAA-TA
38042043 TTTT
1 TTTT
38042047 GTAATTGTTA
Statistics
Matches: 45, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
17 8 0.18
18 24 0.53
19 13 0.29
ACGTcount: A:0.43, C:0.04, G:0.01, T:0.52
Consensus pattern (18 bp):
TTTTAAATTTTATAAATA
Found at i:38042224 original size:18 final size:18
Alignment explanation
Indices: 38042201--38042238 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
38042191 AGGTCTAGAG
38042201 AATATGCCTAAAGAAGAT
1 AATATGCCTAAAGAAGAT
38042219 AATATGCCTAAAGAAGAT
1 AATATGCCTAAAGAAGAT
38042237 AA
1 AA
38042239 GGTCCCTTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.21
Consensus pattern (18 bp):
AATATGCCTAAAGAAGAT
Found at i:38042304 original size:57 final size:57
Alignment explanation
Indices: 38042216--38042374 Score: 284
Period size: 57 Copynumber: 2.8 Consensus size: 57
38042206 GCCTAAAGAA
38042216 GATAATATGCCTAAAGAAGATAAGGTCCCTTGGTGTAAATTCCAAAACGAGTGTCCG
1 GATAATATGCCTAAAGAAGATAAGGTCCCTTGGTGTAAATTCCAAAACGAGTGTCCG
*
38042273 GATAATATGCCTAAAGAAGATAAGATCCCTTGGTGTAAATTCCAAAACGAGTGTCCG
1 GATAATATGCCTAAAGAAGATAAGGTCCCTTGGTGTAAATTCCAAAACGAGTGTCCG
*
38042330 GATAATATGCCTAAAGAA-AGTAAGGTCCCTTGGTGTAGATTCCAA
1 GATAATATGCCTAAAGAAGA-TAAGGTCCCTTGGTGTAAATTCCAA
38042375 TATCATACTT
Statistics
Matches: 98, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
56 1 0.01
57 97 0.99
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (57 bp):
GATAATATGCCTAAAGAAGATAAGGTCCCTTGGTGTAAATTCCAAAACGAGTGTCCG
Found at i:38044742 original size:12 final size:13
Alignment explanation
Indices: 38044709--38044746 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
38044699 TTCCTCAAAA
*
38044709 TAAATATAATTTAT
1 TAAAT-TAATTAAT
38044723 TAAATTAATTAAT
1 TAAATTAATTAAT
38044736 T-AATTAATTAA
1 TAAATTAATTAA
38044747 ATTTTCAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.43
13 8 0.35
14 5 0.22
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
TAAATTAATTAAT
Found at i:38063914 original size:31 final size:31
Alignment explanation
Indices: 38063879--38064045 Score: 97
Period size: 31 Copynumber: 5.3 Consensus size: 31
38063869 CTATTATTAA
* *
38063879 TTAAAAATTTTAATTATATCTATCAAAGTTT
1 TTAAAAATTTTAATTAAATCTATCAAAATTT
* *
38063910 TTAAAAATTATT-ATTAAATCTTTGAAAATTT
1 TTAAAAATT-TTAATTAAATCTATCAAAATTT
* * * ***
38063941 TTAAAACTTTCAATTAGAGTCT-TCAGTTTTTTT
1 TTAAAAATTTTAATTA-AATCTATCA--AAATTT
* * * * ** *
38063974 TTCAAAATTTTCATAAAATTTAAAAAAATAT
1 TTAAAAATTTTAATTAAATCTATCAAAATTT
* *
38064005 TTGAAAATTTTAATTAAA-CTTACCAAAATTT
1 TTAAAAATTTTAATTAAATC-TATCAAAATTT
38064036 TTAAAAATTT
1 TTAAAAATTT
38064046 CCACTAAAAC
Statistics
Matches: 97, Mismatches: 32, Indels: 14
0.68 0.22 0.10
Matches are distributed among these distances:
30 1 0.01
31 72 0.74
32 9 0.09
33 15 0.15
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.46
Consensus pattern (31 bp):
TTAAAAATTTTAATTAAATCTATCAAAATTT
Found at i:38065463 original size:18 final size:18
Alignment explanation
Indices: 38065440--38065492 Score: 67
Period size: 16 Copynumber: 3.1 Consensus size: 18
38065430 CTTTTAAAAT
38065440 TTAAAAAATATATATAAA
1 TTAAAAAATATATATAAA
**
38065458 TTAAAAAAT-T-TATATT
1 TTAAAAAATATATATAAA
38065474 TTAAAAAA-ATATATAAA
1 TTAAAAAATATATATAAA
38065491 TT
1 TT
38065493 TTTTTTTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
16 13 0.45
17 7 0.24
18 9 0.31
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TTAAAAAATATATATAAA
Found at i:38069432 original size:13 final size:13
Alignment explanation
Indices: 38069416--38069440 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38069406 ATAATAACTA
38069416 AAATAAATAAAAT
1 AAATAAATAAAAT
38069429 AAATAAATAAAA
1 AAATAAATAAAA
38069441 GTCTTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:38070203 original size:46 final size:46
Alignment explanation
Indices: 38070135--38070279 Score: 222
Period size: 46 Copynumber: 3.2 Consensus size: 46
38070125 GAAAAATGAT
*
38070135 TAAGACCATAGTTGAAAGACATTATGGCACTATACCGGAGAATAAA
1 TAAGACCATAGTTGAAAGACATTATGGCACTATACCAGAGAATAAA
*
38070181 TAAGACCATAGTTGAAATACATTATGGCACTATACCAGAGAATAAA
1 TAAGACCATAGTTGAAAGACATTATGGCACTATACCAGAGAATAAA
* * * *
38070227 TAAGACCATAGTTGAAAGA-ACTATGGCACCATACCAGA-AATGAG
1 TAAGACCATAGTTGAAAGACATTATGGCACTATACCAGAGAATAAA
38070271 TAAGACCAT
1 TAAGACCAT
38070280 GACTGAAAGA
Statistics
Matches: 92, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
44 13 0.14
45 17 0.18
46 62 0.67
ACGTcount: A:0.44, C:0.17, G:0.18, T:0.21
Consensus pattern (46 bp):
TAAGACCATAGTTGAAAGACATTATGGCACTATACCAGAGAATAAA
Found at i:38070297 original size:45 final size:45
Alignment explanation
Indices: 38070248--38070424 Score: 144
Period size: 45 Copynumber: 3.9 Consensus size: 45
38070238 TTGAAAGAAC
38070248 TATGGCACCATACCA-GAAAT-GAGTAAGACCATGACTGAAAGATGT
1 TATGGCACC--ACCATGAAATCGAGTAAGACCATGACTGAAAGATGT
* * *** *
38070293 TATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAAGGTGT
1 TATGGCACCACCATGAAATCGAGTAAGACCATGACTGAAAGATGT
* * *** *
38070338 TATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAAGACGT
1 TATGGCACCACCATGAAATCGAGTAAGACCATGACTGAAAGATGT
* ** ***
38070383 TATGGCATCATGATTCTATCGAGTAAGACCAT-AGCTGAAAGA
1 TATGGCACCACCATGAAATCGAGTAAGACCATGA-CTGAAAGA
38070425 CGCTACGGCA
Statistics
Matches: 120, Mismatches: 9, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
43 3 0.03
44 3 0.03
45 114 0.95
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (45 bp):
TATGGCACCACCATGAAATCGAGTAAGACCATGACTGAAAGATGT
Found at i:38070425 original size:45 final size:45
Alignment explanation
Indices: 38070268--38070485 Score: 314
Period size: 45 Copynumber: 4.8 Consensus size: 45
38070258 TACCAGAAAT
*
38070268 GAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
**
38070313 GAGTAAGACCATGACTGAAAGGTGTTATGGCATCACGATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
*
38070358 GAGTAAGACCATGACTGAAAGACGTTATGGCATCATGATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
* * * *
38070403 GAGTAAGACCAT-AGCTGAAAGACGCTACGGCAACATGATTCTATC
1 GAGTAAGACCATGA-CTGAAAGACGTTATGGCATCACGATTCTATC
* *
38070448 GAGTAAGACCAT-AGCTGAAAGACGCTATGGAATCACGA
1 GAGTAAGACCATGA-CTGAAAGACGTTATGGCATCACGA
38070486 ATCAAACAAA
Statistics
Matches: 161, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
44 1 0.01
45 160 0.99
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.23
Consensus pattern (45 bp):
GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
Found at i:38070504 original size:90 final size:90
Alignment explanation
Indices: 38070268--38070524 Score: 223
Period size: 90 Copynumber: 2.9 Consensus size: 90
38070258 TACCAGAAAT
* * * * * * * *
38070268 GAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCTATCGAGTAAGACCAT-GACTGAA
1 GAGTAAGACCATGACTGAAAGACGCTATGGAATCACGAATCAAACAAATAAGACCATAG-CTGAA
**** * * *
38070332 AGGTGTTATGGCATCACGATTCTATC
65 AGACACTACGGCAACATGATTCTATC
* * * * * * * *
38070358 GAGTAAGACCATGACTGAAAGACGTTATGGCATCATGATTCTATCGAGTAAGACCATAGCTGAAA
1 GAGTAAGACCATGACTGAAAGACGCTATGGAATCACGAATCAAACAAATAAGACCATAGCTGAAA
*
38070423 GACGCTACGGCAACATGATTCTATC
66 GACACTACGGCAACATGATTCTATC
* *
38070448 GAGTAAGACCAT-AGCTGAAAGACGCTATGGAATCACGAATCAAACAAAT-AGAACCATGGTTGA
1 GAGTAAGACCATGA-CTGAAAGACGCTATGGAATCACGAATCAAACAAATAAG-ACCATAGCTGA
*
38070511 AAGACACTATGGCA
64 AAGACACTACGGCA
38070525 TCAAGACGAG
Statistics
Matches: 144, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
89 3 0.02
90 140 0.97
91 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.23
Consensus pattern (90 bp):
GAGTAAGACCATGACTGAAAGACGCTATGGAATCACGAATCAAACAAATAAGACCATAGCTGAAA
GACACTACGGCAACATGATTCTATC
Found at i:38070504 original size:135 final size:135
Alignment explanation
Indices: 38070268--38070527 Score: 310
Period size: 135 Copynumber: 1.9 Consensus size: 135
38070258 TACCAGAAAT
* * * *
38070268 GAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAA
1 GAGTAAGACCATGACTGAAAGACGCTACGGCAACACGATTCTATCGAGTAAGACCATGACTGAAA
** * * * * * * * **
38070333 GGTGTTATGGCATCACGATTCTATCGAGTAAGACCATGACTGAAAGACGTTATGGCATCATGATT
66 GACGCTATGGAATCACGAATCAAACAAATAAGACCATGACTGAAAGACACTATGGCATCATGATT
38070398 CTATC
131 CTATC
*
38070403 GAGTAAGACCAT-AGCTGAAAGACGCTACGGCAACATGATTCTATCGAGTAAGACCAT-AGCTGA
1 GAGTAAGACCATGA-CTGAAAGACGCTACGGCAACACGATTCTATCGAGTAAGACCATGA-CTGA
**
38070466 AAGACGCTATGGAATCACGAATCAAACAAAT-AGAACCATGGTTGAAAGACACTATGGCATCA
64 AAGACGCTATGGAATCACGAATCAAACAAATAAG-ACCATGACTGAAAGACACTATGGCATCA
38070528 AGACGAGAAT
Statistics
Matches: 104, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
134 4 0.04
135 100 0.96
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (135 bp):
GAGTAAGACCATGACTGAAAGACGCTACGGCAACACGATTCTATCGAGTAAGACCATGACTGAAA
GACGCTATGGAATCACGAATCAAACAAATAAGACCATGACTGAAAGACACTATGGCATCATGATT
CTATC
Found at i:38075490 original size:19 final size:19
Alignment explanation
Indices: 38075466--38075504 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
38075456 GGTGATGAAA
*
38075466 CCTTTGAGTTCAGGTAGTC
1 CCTTTGAGCTCAGGTAGTC
38075485 CCTTTGAGCTCAGGTAGTC
1 CCTTTGAGCTCAGGTAGTC
38075504 C
1 C
38075505 TCAGATAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.15, C:0.26, G:0.26, T:0.33
Consensus pattern (19 bp):
CCTTTGAGCTCAGGTAGTC
Found at i:38078778 original size:92 final size:92
Alignment explanation
Indices: 38078456--38078783 Score: 394
Period size: 92 Copynumber: 3.6 Consensus size: 92
38078446 CTTCAGAGAT
* ** *
38078456 TCTGGCATGTTATC-AGTTGGAATAGCTCTTATGAGCAATCTGGTGTGTTATCAGGGAAGAATAT
1 TCTGGCATGTTATCGA-TTGGAATAGCTCTTATGAGCAAACTGGCATGTTATCAGGGGAGAATAT
* * *
38078520 TTAGCCTATGGGCTTT-TCACTATGTGTA
65 TTAGCATACGGGCTTTGT-ACTATGTGCA
* ** *
38078548 TCTGGCATGTTATCAATTGGAATAGCTCTTATGAGC-AA-TCCCATGAGTTATCAGGTGAGAATA
1 TCTGGCATGTTATCGATTGGAATAGCTCTTATGAGCAAACTGGCAT--GTTATCAGGGGAGAATA
* *
38078611 TTTAGCATGCGGGCTTTGCACTATGTGCA
64 TTTAGCATACGGGCTTTGTACTATGTGCA
* * * *
38078640 TATGGCATGTTATCGGTTGGAATAGCTCTTATGAGCAACCTAGCATGTTATCAGGGGAGAATATT
1 TCTGGCATGTTATCGATTGGAATAGCTCTTATGAGCAAACTGGCATGTTATCAGGGGAGAATATT
*
38078705 TAGCTTACGGGCTTTGTACTATGTGCA
66 TAGCATACGGGCTTTGTACTATGTGCA
** * *
38078732 TCTAACGTGTTATCGATTGGAATAACTCTTATGAGCAAACTGGCATGTTATC
1 TCTGGCATGTTATCGATTGGAATAGCTCTTATGAGCAAACTGGCATGTTATC
38078784 GGATGGTTAC
Statistics
Matches: 200, Mismatches: 30, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
90 2 0.01
91 1 0.00
92 191 0.95
93 2 0.01
94 4 0.02
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (92 bp):
TCTGGCATGTTATCGATTGGAATAGCTCTTATGAGCAAACTGGCATGTTATCAGGGGAGAATATT
TAGCATACGGGCTTTGTACTATGTGCA
Found at i:38082424 original size:17 final size:17
Alignment explanation
Indices: 38082404--38082440 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
38082394 TTTGGACCTT
*
38082404 TTTATTTATTTTTTGGA
1 TTTATTTATTGTTTGGA
*
38082421 TTTATTTATTGTTTGTA
1 TTTATTTATTGTTTGGA
38082438 TTT
1 TTT
38082441 GGTCTTGGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.11, T:0.73
Consensus pattern (17 bp):
TTTATTTATTGTTTGGA
Found at i:38082628 original size:45 final size:44
Alignment explanation
Indices: 38082562--38083051 Score: 208
Period size: 45 Copynumber: 10.9 Consensus size: 44
38082552 ATGAGATTTG
*
38082562 TATCTTCAACCCGCTCCACTGCAACTTTAGGG-GAATAAGATTCAC
1 TATCTTCAACCTGCTCCACTGCAACTTTAGGGAG-ATAAGATT-AC
* * * * *
38082607 CATCTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTAG
1 TATCTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGATTAC
** * * * * *
38082651 TGGCTTTAATCTGCTCTACTGCAACTTTAGAGAGATAAGATTTGC
1 TATCTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGA-TTAC
* *
38082696 TATCTTCAGCCTGCTCCACTGCAACTTTAGGGAGATAAGGTT--
1 TATCTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGATTAC
* * * * * * *
38082738 TGAT-AT-GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATT
1 T-ATCTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGA--T-T-A-C
* * * * * * *
38082786 TATAGCTTTAATCTGTTCCACTACAACTTCAGGGAGATAAGACTAG
1 TAT--CTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGATTAC
* *
38082832 TAACTTCAACCTGCTCCACTGCAACTTCAGGGAGAT-A-ATGT-C
1 TATCTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGAT-TAC
* * * * * * *
38082874 TGA-CAT-GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATT
1 T-ATCTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGA--T-T-A-C
** ** * * * **
38082922 TATAGCTTCAATATATTCCACTACAACTTCAGGGAAATAAGATTTGT
1 TAT--CTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGA-TTAC
** * * * *
38082969 TATCTTCAGTCTGCTCTACTGCAACTTCAGGGAGATAAGACTAG
1 TATCTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGATTAC
* * * *
38083013 TAACTTCAACCTGCTCCACTACAAATTCAGGGAGATAAG
1 TATCTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAG
38083052 GTTTGATATG
Statistics
Matches: 340, Mismatches: 78, Indels: 55
0.72 0.16 0.12
Matches are distributed among these distances:
41 51 0.15
42 7 0.02
43 7 0.02
44 101 0.30
45 102 0.30
46 3 0.01
47 8 0.02
48 3 0.01
49 1 0.00
50 4 0.01
51 53 0.16
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (44 bp):
TATCTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGATTAC
Found at i:38082675 original size:44 final size:44
Alignment explanation
Indices: 38082550--38083051 Score: 286
Period size: 44 Copynumber: 11.2 Consensus size: 44
38082540 GCCTGGTCTA
* * * * * *
38082550 AGATGAGATTTGTATCTTCAACCCGCTCCACTGCAACTTTAGGG
1 AGATAAGATTAGTAGCTTCAATCTGCTCCACTGCAACTTCAGGG
** * *
38082594 -GAATAAGATTCACCATCTTCAATCTGCTCTACTGCAACTTCAGGG
1 AG-ATAAGATT-AGTAGCTTCAATCTGCTCCACTGCAACTTCAGGG
* * * * *
38082639 AGATAAGATTAGTGGCTTTAATCTGCTCTACTGCAACTTTAGAG
1 AGATAAGATTAGTAGCTTCAATCTGCTCCACTGCAACTTCAGGG
* * ** *
38082683 AGATAAGATTTGCTATCTTCAGCCTGCTCCACTGCAACTTTAGGG
1 AGATAAGATTAG-TAGCTTCAATCTGCTCCACTGCAACTTCAGGG
* * * * *
38082728 AGATAAGGTT--T-GATAT-GATCTGCTCTACTGCAACTTCAGAG
1 AGATAAGATTAGTAGCT-TCAATCTGCTCCACTGCAACTTCAGGG
* * * *
38082769 AGATAAGATCTGTAATTTATAGCTTTAATCTGTTCCACTACAACTTCAGGG
1 AGATAAGA--T-T-A---GTAGCTTCAATCTGCTCCACTGCAACTTCAGGG
* * *
38082820 AGATAAGACTAGTAACTTCAACCTGCTCCACTGCAACTTCAGGG
1 AGATAAGATTAGTAGCTTCAATCTGCTCCACTGCAACTTCAGGG
* * * *
38082864 AGATAATG-TCT-G-A-CAT-GATCTGCTCTACTGCAACTTCAGAG
1 AGATAA-GAT-TAGTAGCTTCAATCTGCTCCACTGCAACTTCAGGG
* * ** *
38082905 AGATAAGATCTGTAATTTATAGCTTCAATATATTCCACTACAACTTCAGGG
1 AGATAAGA--T-T-A---GTAGCTTCAATCTGCTCCACTGCAACTTCAGGG
* * * * *
38082956 AAATAAGATTTGTTATCTTCAGTCTGCTCTACTGCAACTTCAGGG
1 AGATAAGATTAG-TAGCTTCAATCTGCTCCACTGCAACTTCAGGG
* * * * *
38083001 AGATAAGACTAGTAACTTCAACCTGCTCCACTACAAATTCAGGG
1 AGATAAGATTAGTAGCTTCAATCTGCTCCACTGCAACTTCAGGG
38083045 AGATAAG
1 AGATAAG
38083052 GTTTGATATG
Statistics
Matches: 347, Mismatches: 81, Indels: 60
0.71 0.17 0.12
Matches are distributed among these distances:
40 1 0.00
41 54 0.16
42 4 0.01
43 5 0.01
44 113 0.33
45 105 0.30
46 1 0.00
47 1 0.00
48 2 0.01
49 2 0.01
50 4 0.01
51 55 0.16
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (44 bp):
AGATAAGATTAGTAGCTTCAATCTGCTCCACTGCAACTTCAGGG
Found at i:38082710 original size:89 final size:86
Alignment explanation
Indices: 38082574--38082777 Score: 239
Period size: 89 Copynumber: 2.3 Consensus size: 86
38082564 TCTTCAACCC
* * * *
38082574 GCTCCACTGCAACTTTAG-GGGAATAAGATTCACCATCTTCAATCTGCTCTACTGCAACTTCAGG
1 GCTCTACTGCAACTTTAGAGAG-ATAAGATTCACCATCTTCAACCTGCTCCACTGCAACTTCAGG
* *
38082638 GAGATAAGATTAGTGGCTTTAATCT
65 GAGATAAGATT--T-GATATAATCT
** * * *
38082663 GCTCTACTGCAACTTTAGAGAGATAAGATTTGCTATCTTCAGCCTGCTCCACTGCAACTTTAGGG
1 GCTCTACTGCAACTTTAGAGAGATAAGATTCACCATCTTCAACCTGCTCCACTGCAACTTCAGGG
* *
38082728 AGATAAGGTTTGATATGATCT
66 AGATAAGATTTGATATAATCT
*
38082749 GCTCTACTGCAACTTCAGAGAGATAAGAT
1 GCTCTACTGCAACTTTAGAGAGATAAGAT
38082778 CTGTAATTTA
Statistics
Matches: 100, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
86 35 0.35
87 1 0.01
89 62 0.62
90 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (86 bp):
GCTCTACTGCAACTTTAGAGAGATAAGATTCACCATCTTCAACCTGCTCCACTGCAACTTCAGGG
AGATAAGATTTGATATAATCT
Found at i:38082868 original size:136 final size:137
Alignment explanation
Indices: 38082615--38083007 Score: 523
Period size: 136 Copynumber: 2.9 Consensus size: 137
38082605 ACCATCTTCA
* * * * * *
38082615 ATCTGCTCTACTGCAACTTCAGGGAGATAAGA--T-T-A---GTGGCTTTAATCTGCTCTACTGC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTTAATCTGTTCCACTAC
* * * *
38082673 AACTTTAGAGAGATAAGATTTGCTATCTTCAGCCTGCTCCACTGCAACTTTAGGGAGATAAGGTT
66 AACTTCAGGGAGATAAGATTTGCTATCTTCAGCCTGCTCCACTGCAACTTCAGGGAGATAAGGTC
*
38082738 TGATATG
131 TGACATG
38082745 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTTAATCTGTTCCACTAC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTTAATCTGTTCCACTAC
* * * * *
38082810 AACTTCAGGGAGATAAGACTAG-TAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAATGTC
66 AACTTCAGGGAGATAAGATTTGCTATCTTCAGCCTGCTCCACTGCAACTTCAGGGAGATAAGGTC
38082874 TGACATG
131 TGACATG
* * *
38082881 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATATATTCCACTAC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTTAATCTGTTCCACTAC
* * * *
38082946 AACTTCAGGGAAATAAGATTTGTTATCTTCAGTCTGCTCTACTGCAACTTCAGGGAGATAAG
66 AACTTCAGGGAGATAAGATTTGCTATCTTCAGCCTGCTCCACTGCAACTTCAGGGAGATAAG
38083008 ACTAGTAACT
Statistics
Matches: 228, Mismatches: 27, Indels: 9
0.86 0.10 0.03
Matches are distributed among these distances:
130 31 0.14
132 1 0.00
133 1 0.00
134 1 0.00
136 124 0.54
137 70 0.31
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (137 bp):
ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTTAATCTGTTCCACTAC
AACTTCAGGGAGATAAGATTTGCTATCTTCAGCCTGCTCCACTGCAACTTCAGGGAGATAAGGTC
TGACATG
Found at i:38082952 original size:92 final size:90
Alignment explanation
Indices: 38082846--38083143 Score: 295
Period size: 92 Copynumber: 3.3 Consensus size: 90
38082836 TTCAACCTGC
* * *
38082846 TCCACTGCAACTTCAGGGAGATAATGTCTGACATGATCTGCTCTACTGCAACTTCAGAGAGATAA
1 TCCACTACAACTTCAGGGAAATAA-GTTTGACATGATCTGCTCTACTGCAACTTCAGAGAGATAA
*
38082911 GATCTGTAATTTATAGCTTCAATATAT
65 GATCT-TAATTTATAGCTTCAATCTAT
* * *
38082938 TCCACTACAACTTCAGGGAAATAAGATTTGTTATCTTCAGTCTGCTCTACTGCAACTTCAGGGAG
1 TCCACTACAACTTCAGGGAAATAAG-TTTG--A-CATGA-TCTGCTCTACTGCAACTTCAGAGAG
* * **
38083003 ATAAGA-C-T-A-GTA-A-CTTCAACCTGC
61 ATAAGATCTTAATTTATAGCTTCAATCTAT
* * * * * *
38083027 TCCACTACAAATTCAGGGAGATAAGGTTTGATATGATATACTCTACTACAACTTCAGAGAGATAA
1 TCCACTACAACTTCAGGGAAATAA-GTTTGACATGATCTGCTCTACTGCAACTTCAGAGAGATAA
38083092 GATCTTCAATTTATAGCTTCAATCTAT
65 GATCTT-AATTTATAGCTTCAATCTAT
*
38083119 TCCAC-AGCAACTTTAGGGAAATAAG
1 TCCACTA-CAACTTCAGGGAAATAAG
38083144 ATTCGCTATC
Statistics
Matches: 165, Mismatches: 27, Indels: 29
0.75 0.12 0.13
Matches are distributed among these distances:
85 27 0.16
86 3 0.02
87 2 0.01
89 34 0.21
90 4 0.02
91 6 0.04
92 53 0.32
93 1 0.01
94 1 0.01
95 4 0.02
96 30 0.18
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (90 bp):
TCCACTACAACTTCAGGGAAATAAGTTTGACATGATCTGCTCTACTGCAACTTCAGAGAGATAAG
ATCTTAATTTATAGCTTCAATCTAT
Found at i:38082996 original size:181 final size:181
Alignment explanation
Indices: 38082809--38083202 Score: 630
Period size: 181 Copynumber: 2.2 Consensus size: 181
38082799 TGTTCCACTA
* * *
38082809 CAACTTCAGGGAGATAAGACTAGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAATGTC
1 CAACTTCAGGGAGATAAGACTAGTAACTTCAACCTGCTCCACTACAAATTCAGGGAGATAAGGTC
* * *
38082874 TGACATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGT-AATTTATAGCTTCAATATAT
66 TGACATGATATACTCTACTACAACTTCAGAGAGATAAGATCT-TCAATTTATAGCTTCAATATAT
* *
38082938 TCCACTA-CAACTTCAGGGAAATAAGATTTGTTATCTTCAGTCTGCTCTACTG
130 TCCAC-AGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCTACTG
*
38082990 CAACTTCAGGGAGATAAGACTAGTAACTTCAACCTGCTCCACTACAAATTCAGGGAGATAAGGTT
1 CAACTTCAGGGAGATAAGACTAGTAACTTCAACCTGCTCCACTACAAATTCAGGGAGATAAGGTC
* *
38083055 TGATATGATATACTCTACTACAACTTCAGAGAGATAAGATCTTCAATTTATAGCTTCAATCTATT
66 TGACATGATATACTCTACTACAACTTCAGAGAGATAAGATCTTCAATTTATAGCTTCAATATATT
* *
38083120 CCACAGCAACTTTAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCTACTT
131 CCACAGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCTACTG
*
38083171 CAACTTCAGGGAGATGAGACTAGTAACTTCAA
1 CAACTTCAGGGAGATAAGACTAGTAACTTCAA
38083203 AGAGATAAGG
Statistics
Matches: 197, Mismatches: 14, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
180 2 0.01
181 195 0.99
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (181 bp):
CAACTTCAGGGAGATAAGACTAGTAACTTCAACCTGCTCCACTACAAATTCAGGGAGATAAGGTC
TGACATGATATACTCTACTACAACTTCAGAGAGATAAGATCTTCAATTTATAGCTTCAATATATT
CCACAGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCTACTG
Found at i:38083004 original size:96 final size:94
Alignment explanation
Indices: 38082882--38083185 Score: 331
Period size: 96 Copynumber: 3.3 Consensus size: 94
38082872 TCTGACATGA
*
38082882 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATATATTCCACTACA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCT-TAATTTATAGCTTCAATCTATTCCACTACA
38082947 ACTTCAGGGAAATAAGATTTGTTATCTTCAG
65 ACTTCAGGGAAATAAGATTTG-TATCTTCAG
* * * **
38082978 TCTGCTCTACTGCAACTTCAGGGAGATAAGA-C-T-A-GTA-A-CTTCAACCTGCTCCACTACAA
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTTAATTTATAGCTTCAATCTATTCCACTACAA
* * * * *
38083037 ATTCAGGGAGATAAGGTTTG-AT-ATGA-
66 CTTCAGGGAAATAAGATTTGTATCTTCAG
* * *
38083063 TATACTCTACTACAACTTCAGAGAGATAAGATCTTCAATTTATAGCTTCAATCTATTCCAC-AGC
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTT-AATTTATAGCTTCAATCTATTCCACTA-C
* *
38083127 AACTTTAGGGAAATAAGATTCGCTATCTTCAG
64 AACTTCAGGGAAATAAGATTTG-TATCTTCAG
* *
38083159 TCTGCTCTACTTCAACTTCAGGGAGAT
1 TCTGCTCTACTGCAACTTCAGAGAGAT
38083186 GAGACTAGTA
Statistics
Matches: 166, Mismatches: 30, Indels: 24
0.75 0.14 0.11
Matches are distributed among these distances:
85 27 0.16
86 3 0.02
87 3 0.02
89 35 0.21
90 3 0.02
91 4 0.02
92 32 0.19
93 1 0.01
94 2 0.01
95 3 0.02
96 53 0.32
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.32
Consensus pattern (94 bp):
TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTTAATTTATAGCTTCAATCTATTCCACTACAA
CTTCAGGGAAATAAGATTTGTATCTTCAG
Found at i:38084183 original size:22 final size:21
Alignment explanation
Indices: 38084142--38084204 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 21
38084132 GGCCTCTCCT
*
38084142 TTTTCTTTTTC-TTCTTTTTTTG
1 TTTTC-TTTTCATT-TTTTTTGG
38084164 TGTTTCTTTTCATTTCTTTTTGG
1 T-TTTCTTTTCATTT-TTTTTGG
*
38084187 TTTTTTTTTCATTTTTTT
1 TTTTCTTTTCATTTTTTT
38084205 AAAAAAGTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
21 4 0.11
22 19 0.53
23 13 0.36
ACGTcount: A:0.03, C:0.11, G:0.06, T:0.79
Consensus pattern (21 bp):
TTTTCTTTTCATTTTTTTTGG
Found at i:38087251 original size:43 final size:43
Alignment explanation
Indices: 38087183--38087265 Score: 109
Period size: 43 Copynumber: 1.9 Consensus size: 43
38087173 GATTCTATTA
38087183 TGTGTTATCGTGTAAGACCACGTCTGGGAC-GTTGGCATCAACT
1 TGTGTTATCGTGTAAGACCACGTCTGGGACAG-TGGCATCAACT
*
38087226 TGTGTT-TACGTGTAAGACTC-TGTCTGGGACAGTGGCATCA
1 TGTGTTAT-CGTGTAAGAC-CACGTCTGGGACAGTGGCATCA
38087266 TTCTGTGATT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
42 1 0.03
43 33 0.92
44 2 0.06
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.31
Consensus pattern (43 bp):
TGTGTTATCGTGTAAGACCACGTCTGGGACAGTGGCATCAACT
Found at i:38087285 original size:43 final size:43
Alignment explanation
Indices: 38087204--38087286 Score: 98
Period size: 43 Copynumber: 1.9 Consensus size: 43
38087194 GTAAGACCAC
* *
38087204 GTCTGGGACGTTGGCATCAACTTGTGTTTACGTGTAAGACTCT
1 GTCTGGGACGTTGGCATCAACTTGTGATTACATGTAAGACTCT
* *
38087247 GTCTGGGACAG-TGGCATC-ATTCTGTGATTACATTTAAGAC
1 GTCTGGGAC-GTTGGCATCAACT-TGTGATTACATGTAAGAC
38087287 CACATCTGGG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
42 2 0.06
43 31 0.91
44 1 0.03
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.34
Consensus pattern (43 bp):
GTCTGGGACGTTGGCATCAACTTGTGATTACATGTAAGACTCT
Found at i:38088306 original size:23 final size:23
Alignment explanation
Indices: 38088280--38088526 Score: 293
Period size: 23 Copynumber: 10.7 Consensus size: 23
38088270 ATTGGGTATA
*
38088280 TATATATGCTGTCCAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
* * * *
38088303 TATAAATGTTGTCTAATTTAGCG
1 TATAAATGCTGTCCAATTTGGTG
* * *
38088326 TATATATGCTATCCAATTTTGTG
1 TATAAATGCTGTCCAATTTGGTG
38088349 TATAAAT-CTCGTCCAATTTGGTG
1 TATAAATGCT-GTCCAATTTGGTG
*
38088372 TGTAAAT-CTGTCCAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
*
38088394 TAGAAATGCTGTCCAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
*
38088417 TATAAATGCTGTACAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
* *
38088440 TATATATGCTGTCCAATTTGGTA
1 TATAAATGCTGTCCAATTTGGTG
*
38088463 TATATATATGCTGTCCAATTGGGTG
1 TATA-A-ATGCTGTCCAATTTGGTG
* *
38088488 TATAAATGTTGTCCAATTTGATG
1 TATAAATGCTGTCCAATTTGGTG
38088511 TATAAGA-GCTGTCCAA
1 TATAA-ATGCTGTCCAA
38088527 ACAGGGTAGA
Statistics
Matches: 190, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
22 20 0.11
23 148 0.78
24 2 0.01
25 20 0.11
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (23 bp):
TATAAATGCTGTCCAATTTGGTG
Found at i:38088443 original size:91 final size:94
Alignment explanation
Indices: 38088274--38088515 Score: 321
Period size: 91 Copynumber: 2.6 Consensus size: 94
38088264 TAATTGATTG
* * * * *
38088274 GGTATATATATATGCTGTCCAATTTGGTGTATAAATGTTGTCTAATTTAGCGTATATATGCTATC
1 GGTATATATATATGCTGTCCAATTTGGTGTATAAATGTTGTCCAATTTGGTGTATAAATGCTATA
*
38088339 CAATTTTGTGTATAAAT-CTCGTCCAATTT
66 CAATTTGGTGTATAAATGCT-GTCCAATTT
* * * * *
38088368 GGTGTGTA-A-AT-CTGTCCAATTTGGTGTAGAAATGCTGTCCAATTTGGTGTATAAATGCTGTA
1 GGTATATATATATGCTGTCCAATTTGGTGTATAAATGTTGTCCAATTTGGTGTATAAATGCTATA
*
38088430 CAATTTGGTGTATATATGCTGTCCAATTT
66 CAATTTGGTGTATAAATGCTGTCCAATTT
* *
38088459 GGTATATATATATGCTGTCCAATTGGGTGTATAAATGTTGTCCAATTTGATGTATAA
1 GGTATATATATATGCTGTCCAATTTGGTGTATAAATGTTGTCCAATTTGGTGTATAA
38088516 GAGCTGTCCA
Statistics
Matches: 126, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
91 73 0.58
92 5 0.04
93 3 0.02
94 45 0.36
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.41
Consensus pattern (94 bp):
GGTATATATATATGCTGTCCAATTTGGTGTATAAATGTTGTCCAATTTGGTGTATAAATGCTATA
CAATTTGGTGTATAAATGCTGTCCAATTT
Found at i:38088522 original size:71 final size:70
Alignment explanation
Indices: 38088280--38088526 Score: 259
Period size: 71 Copynumber: 3.5 Consensus size: 70
38088270 ATTGGGTATA
* * * * * ** *
38088280 TATATATGCTGTCCAATTTGGTGTATAAATGTTGTCTAATTTAG--CGTATATATGCTATCCAAT
1 TATAAATGTTGTCCAATTTGGTGTATAAA-GCTGTCCAATTTGGTATATATATATGCTGTCCAAT
*
38088343 TTTGTG
65 TTGGTG
* * * * * *
38088349 TATAAATCTCGTCCAATTTGGTGTGTAAATCTGTCCAATTTGGTGTAGA-A-ATGCTGTCCAATT
1 TATAAATGTTGTCCAATTTGGTGTATAAAGCTGTCCAATTTGGTATATATATATGCTGTCCAATT
38088412 TGGTG
66 TGGTG
* * *
38088417 TATAAATGCTGTACAATTTGGTGTATATATGCTGTCCAATTTGGTATATATATATGCTGTCCAAT
1 TATAAATGTTGTCCAATTTGGTGTATA-AAGCTGTCCAATTTGGTATATATATATGCTGTCCAAT
*
38088482 TGGGTG
65 TTGGTG
*
38088488 TATAAATGTTGTCCAATTTGATGTATAAGAGCTGTCCAA
1 TATAAATGTTGTCCAATTTGGTGTATAA-AGCTGTCCAA
38088527 ACAGGGTAGA
Statistics
Matches: 144, Mismatches: 28, Indels: 10
0.79 0.15 0.05
Matches are distributed among these distances:
68 48 0.33
69 43 0.30
70 3 0.02
71 50 0.35
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (70 bp):
TATAAATGTTGTCCAATTTGGTGTATAAAGCTGTCCAATTTGGTATATATATATGCTGTCCAATT
TGGTG
Found at i:38095122 original size:43 final size:42
Alignment explanation
Indices: 38095006--38095134 Score: 120
Period size: 43 Copynumber: 3.0 Consensus size: 42
38094996 CATAGGATTC
*
38095006 CGTTATGTGTTATCGTGTAAGACCACATCTGGGACGTTGGCAT
1 CGTTATGTGTTA-CGTGTAAGACCACGTCTGGGACGTTGGCAT
** * *
38095049 CAACT-TGTGTTTACGTGTAAAACTC-TGTCTGGGACAG-TGGCAT
1 C-GTTATGTG-TTACGTGTAAGAC-CACGTCTGGGAC-GTTGGCAT
* *
38095092 CGTTATGTGATTACATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGTTATGTG-TTACGTGTAAGACCACGTCTGGGACGTTGGCAT
38095135 TGTACGATAT
Statistics
Matches: 67, Mismatches: 12, Indels: 14
0.72 0.13 0.15
Matches are distributed among these distances:
42 3 0.04
43 58 0.87
44 6 0.09
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (42 bp):
CGTTATGTGTTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:38096134 original size:23 final size:23
Alignment explanation
Indices: 38096108--38096543 Score: 460
Period size: 23 Copynumber: 18.7 Consensus size: 23
38096098 TGATTGGGTA
*
38096108 TATATATGCTGTCCAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
**
38096131 TATAAATGCTGTCCAATTTATTG
1 TATAAATGCTGTCCAATTTGGTG
* * *
38096154 TATACATGCTATCAAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
* *
38096177 TATAAAATGTTGTCCAATTTAGTG
1 TAT-AAATGCTGTCCAATTTGGTG
*
38096201 TATATATGCTGTCCAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
* *
38096224 TACAAAATGCTGTCCAATTTGTTG
1 TA-TAAATGCTGTCCAATTTGGTG
* *
38096248 TATAAATGTTGTCCAATTTAGTG
1 TATAAATGCTGTCCAATTTGGTG
* * *
38096271 TATATATCCTGTCCAATTTAGTG
1 TATAAATGCTGTCCAATTTGGTG
* * *
38096294 TACAAAATGCTATCCAATTTGTTG
1 TA-TAAATGCTGTCCAATTTGGTG
* **
38096318 TATAAATGTTGTCCAATTCAGTG
1 TATAAATGCTGTCCAATTTGGTG
* *
38096341 TATATATCCTGTCCAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
*
38096364 TATAAATGCTATCCAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
**
38096387 TATAAAATGCTGTCCAATTTCTTG
1 TAT-AAATGCTGTCCAATTTGGTG
*
38096411 TATAAATGCTATCCAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
*
38096434 TATAAATGCTATCCAATTTGGTG
1 TATAAATGCTGTCCAATTTGGTG
* * *
38096457 TATATATGCTATCCAATTTGGCATA
1 TATAAATGCTGTCCAATTTGG--TG
* * *
38096482 TATATATGTTGTCCAATTGGGTG
1 TATAAATGCTGTCCAATTTGGTG
* * *
38096505 TATAAATGTTGTCCGATTTGATG
1 TATAAATGCTGTCCAATTTGGTG
38096528 TAT-AATAGCTGTCCAA
1 TATAAAT-GCTGTCCAA
38096544 ACAGGGTAGA
Statistics
Matches: 342, Mismatches: 64, Indels: 14
0.81 0.15 0.03
Matches are distributed among these distances:
22 3 0.01
23 245 0.72
24 75 0.22
25 19 0.06
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.41
Consensus pattern (23 bp):
TATAAATGCTGTCCAATTTGGTG
Found at i:38096212 original size:93 final size:92
Alignment explanation
Indices: 38096108--38096532 Score: 458
Period size: 93 Copynumber: 4.6 Consensus size: 92
38096098 TGATTGGGTA
* * *
38096108 TATATATGCTGTCCAATTTGGTGTATAAATGCTGTCCAATTTATTGTATACATGCTATCAAATTT
1 TATATATGCTGTCCAATTTGGTGTATAAATGCTGTCCAATTTAGTGTATAAATGCTATCCAATTT
* *
38096173 GGTGTATAAAATGTTGTCCAATTTAGTG
66 GGTGTAT-AAATGCTATCCAATTTAGTG
* * *
38096201 TATATATGCTGTCCAATTTGGTGTACAAAATGCTGTCCAATTT-GTTGTATAAATGTTGTCCAAT
1 TATATATGCTGTCCAATTTGGTGTA-TAAATGCTGTCCAATTTAG-TGTATAAATGCTATCCAAT
* * * *
38096265 TTAGTGTATATATCCTGTCCAATTTAGTG
64 TTGGTGTATAAATGCTATCCAATTTAGTG
* * * * * * * * *
38096294 TACAAAATGCTATCCAATTTGTTGTATAAATGTTGTCCAATTCAGTGTATATATCCTGTCCAATT
1 TA-TATATGCTGTCCAATTTGGTGTATAAATGCTGTCCAATTTAGTGTATAAATGCTATCCAATT
*
38096359 TGGTGTATAAATGCTATCCAATTTGGTG
65 TGGTGTATAAATGCTATCCAATTTAGTG
* ** * *
38096387 TATAAAATGCTGTCCAATTTCTTGTATAAATGCTATCCAATTTGGTGTATAAATGCTATCCAATT
1 TAT-ATATGCTGTCCAATTTGGTGTATAAATGCTGTCCAATTTAGTGTATAAATGCTATCCAATT
* * *
38096452 TGGTGTATATATGCTATCCAATTTGGCATA
65 TGGTGTATAAATGCTATCCAATTTAG--TG
* * * *
38096482 TATATATGTTGTCCAATTGGGTGTATAAATGTTGTCCGATTT-GATGTATAA
1 TATATATGCTGTCCAATTTGGTGTATAAATGCTGTCCAATTTAG-TGTATAA
38096533 TAGCTGTCCA
Statistics
Matches: 279, Mismatches: 45, Indels: 15
0.82 0.13 0.04
Matches are distributed among these distances:
93 178 0.64
94 97 0.35
95 4 0.01
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.41
Consensus pattern (92 bp):
TATATATGCTGTCCAATTTGGTGTATAAATGCTGTCCAATTTAGTGTATAAATGCTATCCAATTT
GGTGTATAAATGCTATCCAATTTAGTG
Done.