Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62681010
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1052928 characters in sequence are not A, C, G, or T
File 125 of 210
Found at i:38096255 original size:70 final size:69
Alignment explanation
Indices: 38096108--38096543 Score: 505
Period size: 70 Copynumber: 6.2 Consensus size: 69
38096098 TGATTGGGTA
* * * ** * *
38096108 TATATATGCTGTCCAATTTGGTGTATAAATGCTGTCCAATTTATTGTATACATGCTATCAAATTT
1 TATAAATGCTGTCCAATTTAGTGTATATATGCTGTCCAATTTGGTGTATAAATGCTATCCAATTT
38096173 GGTG
66 GGTG
* * *
38096177 TATAAAATGTTGTCCAATTTAGTGTATATATGCTGTCCAATTTGGTGTACAAAATGCTGTCCAAT
1 TAT-AAATGCTGTCCAATTTAGTGTATATATGCTGTCCAATTTGGTGTA-TAAATGCTATCCAAT
*
38096242 TTGTTG
64 TTGGTG
* * * *
38096248 TATAAATGTTGTCCAATTTAGTGTATATATCCTGTCCAATTTAGTGTACAAAATGCTATCCAATT
1 TATAAATGCTGTCCAATTTAGTGTATATATGCTGTCCAATTTGGTGTA-TAAATGCTATCCAATT
*
38096313 TGTTG
65 TGGTG
* * *
38096318 TATAAATGTTGTCCAATTCAGTGTATATATCCTGTCCAATTTGGTGTATAAATGCTATCCAATTT
1 TATAAATGCTGTCCAATTTAGTGTATATATGCTGTCCAATTTGGTGTATAAATGCTATCCAATTT
38096383 GGTG
66 GGTG
** * *
38096387 TATAAAATGCTGTCCAATTTCTTGTATAAATGCTATCCAATTTGGTGTATAAATGCTATCCAATT
1 TAT-AAATGCTGTCCAATTTAGTGTATATATGCTGTCCAATTTGGTGTATAAATGCTATCCAATT
38096452 TGGTG
65 TGGTG
* * * * * * * * *
38096457 TATATATGCTATCCAATTTGGCATATATATATGTTGTCCAATTGGGTGTATAAATGTTGTCCGAT
1 TATAAATGCTGTCCAATTTAG--TGTATATATGCTGTCCAATTTGGTGTATAAATGCTATCCAAT
*
38096522 TTGATG
64 TTGGTG
38096528 TAT-AATAGCTGTCCAA
1 TATAAAT-GCTGTCCAA
38096544 ACAGGGTAGA
Statistics
Matches: 321, Mismatches: 40, Indels: 10
0.87 0.11 0.03
Matches are distributed among these distances:
69 39 0.12
70 213 0.66
71 69 0.21
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.41
Consensus pattern (69 bp):
TATAAATGCTGTCCAATTTAGTGTATATATGCTGTCCAATTTGGTGTATAAATGCTATCCAATTT
GGTG
Found at i:38100152 original size:12 final size:12
Alignment explanation
Indices: 38100135--38100159 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
38100125 TCAACGAAAA
38100135 AATAAAATAAAT
1 AATAAAATAAAT
38100147 AATAAAATAAAT
1 AATAAAATAAAT
38100159 A
1 A
38100160 GTAACAACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AATAAAATAAAT
Found at i:38100387 original size:3 final size:3
Alignment explanation
Indices: 38100379--38100432 Score: 58
Period size: 3 Copynumber: 18.3 Consensus size: 3
38100369 GTACATAAAT
* *
38100379 ATA ATA ATA ATA ATAA ATA ATA ATA A-A ATG A-A ATA ATA ATA AAA
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
38100423 ATA AAA ATA A
1 ATA ATA ATA A
38100433 ACCAAAATAA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
2 3 0.07
3 36 0.86
4 3 0.07
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (3 bp):
ATA
Found at i:38100400 original size:16 final size:15
Alignment explanation
Indices: 38100379--38100432 Score: 74
Period size: 16 Copynumber: 3.5 Consensus size: 15
38100369 GTACATAAAT
38100379 ATAATAATAATAATAA
1 ATAATAATAA-AATAA
38100395 ATAATAATAAAATGAA
1 ATAATAATAAAAT-AA
38100411 ATAATAATAAAAATAA
1 ATAATAAT-AAAATAA
38100427 A-AATAA
1 ATAATAA
38100433 ACCAAAATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.22
16 23 0.64
17 5 0.14
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (15 bp):
ATAATAATAAAATAA
Found at i:38100453 original size:19 final size:19
Alignment explanation
Indices: 38100425--38100468 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
38100415 TAATAAAAAT
*
38100425 AAAA-ATAAACCAAAATAA
1 AAAATATAAACAAAAATAA
38100443 AAAATATAAACAAAAATAA
1 AAAATATAAACAAAAATAA
38100462 ATAAATA
1 A-AAATA
38100469 ATAACAGCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.17
19 14 0.61
20 5 0.22
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.16
Consensus pattern (19 bp):
AAAATATAAACAAAAATAA
Found at i:38101714 original size:27 final size:26
Alignment explanation
Indices: 38101684--38101870 Score: 216
Period size: 27 Copynumber: 7.0 Consensus size: 26
38101674 AGACCCCAAA
*
38101684 ATAGTGTAAAATGACTGAAATACCCTC
1 ATAGGGTAAAATGACTGAAATACCC-C
*
38101711 ATAGGGTAAAATGA-TCAAAATACTCCC
1 ATAGGGTAAAATGACT-GAAATAC-CCC
*
38101738 GTAGGGTAAAATGA-TCGAAATACCCTC
1 ATAGGGTAAAATGACT-GAAATACCC-C
38101765 ATAGGGTAAAATGACTGAAATACCCCC
1 ATAGGGTAAAATGACTGAAATA-CCCC
* *
38101792 ATAGGATAAAATGACCGAAATACCCC
1 ATAGGGTAAAATGACTGAAATACCCC
*
38101818 ATAGGGTAAAATGACCGAAATACCCCC
1 ATAGGGTAAAATGACTGAAATA-CCCC
* **
38101845 ATAAGGTAAAATGACTGTTATACCCC
1 ATAGGGTAAAATGACTGAAATACCCC
38101871 TAAGAGATAA
Statistics
Matches: 142, Mismatches: 12, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
26 32 0.23
27 104 0.73
28 6 0.04
ACGTcount: A:0.41, C:0.21, G:0.17, T:0.21
Consensus pattern (26 bp):
ATAGGGTAAAATGACTGAAATACCCC
Found at i:38101841 original size:53 final size:53
Alignment explanation
Indices: 38101684--38101859 Score: 246
Period size: 54 Copynumber: 3.3 Consensus size: 53
38101674 AGACCCCAAA
* * * *
38101684 ATAGTGTAAAATGACTGAAATACCCTCATAGGGTAAAATGATCAAAATACTCCC
1 ATAG-GTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCC
* * *
38101738 GTAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCC
1 ATA-GGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCC
38101792 ATAGGATAAAATGACCGAAATACCC-CATAGGGTAAAATGACCGAAATACCCCC
1 ATAGG-TAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCC
38101845 ATAAGGTAAAATGAC
1 AT-AGGTAAAATGAC
38101860 TGTTATACCC
Statistics
Matches: 109, Mismatches: 10, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
53 40 0.37
54 68 0.62
55 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.20
Consensus pattern (53 bp):
ATAGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCC
Found at i:38101868 original size:80 final size:81
Alignment explanation
Indices: 38101689--38101883 Score: 268
Period size: 80 Copynumber: 2.4 Consensus size: 81
38101679 CCAAAATAGT
* * * * *
38101689 GTAAAATGACTGAAATACCCTCATAGGGTAAAATGATCAAAATACTCCCGTAGGGTAAAATGATC
1 GTAAAATGACTGAAATACCCCCATAGGATAAAATGACCAAAATACTCCCATAGGGTAAAATGACC
* *
38101754 GAAATACCCTCATAGG
66 GAAATACCCCCATAAG
*
38101770 GTAAAATGACTGAAATACCCCCATAGGATAAAATGACCGAAATAC-CCCATAGGGTAAAATGACC
1 GTAAAATGACTGAAATACCCCCATAGGATAAAATGACCAAAATACTCCCATAGGGTAAAATGACC
38101834 GAAATACCCCCATAAG
66 GAAATACCCCCATAAG
** *
38101850 GTAAAATGACTGTTATACCCCTA-AGAGATAAAAT
1 GTAAAATGACTGAAATACCCCCATAG-GATAAAAT
38101884 AATTGTTATG
Statistics
Matches: 102, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
79 2 0.02
80 59 0.58
81 41 0.40
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.21
Consensus pattern (81 bp):
GTAAAATGACTGAAATACCCCCATAGGATAAAATGACCAAAATACTCCCATAGGGTAAAATGACC
GAAATACCCCCATAAG
Found at i:38110340 original size:20 final size:20
Alignment explanation
Indices: 38110315--38110353 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
38110305 CGCCGCCAAC
*
38110315 GTCACGTCATCACCACCACG
1 GTCACGTCACCACCACCACG
38110335 GTCACGTCACCACCACCAC
1 GTCACGTCACCACCACCAC
38110354 TTGCGCCGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.49, G:0.13, T:0.13
Consensus pattern (20 bp):
GTCACGTCACCACCACCACG
Found at i:38111743 original size:15 final size:15
Alignment explanation
Indices: 38111725--38111773 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
38111715 CGTACGTACC
38111725 TATATTTTATATTTT
1 TATATTTTATATTTT
**
38111740 TATATTTTATAATCCT
1 TATATTTTAT-ATTTT
38111756 TATA-TTTATATCTTT
1 TATATTTTATAT-TTT
38111771 TAT
1 TAT
38111774 TTATTTTCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 2 0.07
15 19 0.68
16 7 0.25
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (15 bp):
TATATTTTATATTTT
Found at i:38113339 original size:50 final size:50
Alignment explanation
Indices: 38113065--38113342 Score: 358
Period size: 50 Copynumber: 5.6 Consensus size: 50
38113055 TATCTTAGAT
* ** * * * * * *
38113065 ATGGTCTTACGTGGGAGTTCTCATATCGATACCCATGCCATGTCCCAGAT
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
* **
38113115 ATGGTATTACGGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
* * *
38113165 ATGGTCTTTCATGGGACCTCTCATCCCAGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
* * * *
38113215 ATGGTCTTATATGGGGCCTCCCATCTTGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
** *
38113265 ATGGTCTTACACAGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
38113315 ATGGTCTTACATGGGACCTCTCATCTCG
1 ATGGTCTTACATGGGACCTCTCATCTCG
38113343 TGTTGACATG
Statistics
Matches: 197, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 197 1.00
ACGTcount: A:0.20, C:0.32, G:0.22, T:0.26
Consensus pattern (50 bp):
ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
Found at i:38113424 original size:44 final size:44
Alignment explanation
Indices: 38113360--38113455 Score: 165
Period size: 44 Copynumber: 2.2 Consensus size: 44
38113350 ATGGATCAAC
* *
38113360 CATGGTACTTTTTCGTCAATTCTTTCTTAATTGCCATGTTATAAA
1 CATGG-ACTTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAA
38113405 CATGGACTTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAA
1 CATGGACTTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAA
38113449 CATGGAC
1 CATGGAC
38113456 CTTGAGATAT
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
44 44 0.90
45 5 0.10
ACGTcount: A:0.25, C:0.21, G:0.12, T:0.42
Consensus pattern (44 bp):
CATGGACTTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAA
Found at i:38115030 original size:48 final size:48
Alignment explanation
Indices: 38114959--38115054 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
38114949 AATTTCTCGT
38114959 ATAGTCTCGGCATCCTTATCATCTTAATGCTCAAGCTAAGATTATGAA
1 ATAGTCTCGGCATCCTTATCATCTTAATGCTCAAGCTAAGATTATGAA
*
38115007 ATAGTCTCGGCATCCTTATCATCTTACTGCTCAAGCTAAGATTATGAA
1 ATAGTCTCGGCATCCTTATCATCTTAATGCTCAAGCTAAGATTATGAA
38115055 TTATACTCTC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (48 bp):
ATAGTCTCGGCATCCTTATCATCTTAATGCTCAAGCTAAGATTATGAA
Found at i:38117556 original size:12 final size:12
Alignment explanation
Indices: 38117539--38117565 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
38117529 CATTCACACT
38117539 TAACATTACTCA
1 TAACATTACTCA
38117551 TAACATTACTCA
1 TAACATTACTCA
38117563 TAA
1 TAA
38117566 AAAATTCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (12 bp):
TAACATTACTCA
Found at i:38119676 original size:50 final size:50
Alignment explanation
Indices: 38119642--38119931 Score: 458
Period size: 50 Copynumber: 5.8 Consensus size: 50
38119632 ATACCCAAGT
38119642 CATGTCCCAGACATGGTCTTACGA-GGGACCTCTCATCTCGGTGCCAACGC
1 CATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCATCTCGGTGCCAACGC
* *
38119692 CATGTCCCAGACATGGTCTTACATGGGTCCTCTCATCTCTGTGCCAACGC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGC
*
38119742 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGC
*
38119792 CATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAACGC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGC
* * * * *
38119842 CTTG-CCTCAAACATGGTCTTACACGGGACCTCTCATCTTGGTGCCAACAC
1 CATGTCC-CAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGC
*
38119892 CATGTCCTAGACATGGTCTTACATGGGACCTCTCATCTCG
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
38119932 TGTTGACATG
Statistics
Matches: 219, Mismatches: 18, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
49 3 0.01
50 214 0.98
51 2 0.01
ACGTcount: A:0.20, C:0.33, G:0.21, T:0.26
Consensus pattern (50 bp):
CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGC
Found at i:38120013 original size:44 final size:44
Alignment explanation
Indices: 38119949--38120044 Score: 149
Period size: 44 Copynumber: 2.2 Consensus size: 44
38119939 ATGGATCAAG
*
38119949 CATGGTACTTTTCCGTCAATTCTT-TCTTAATTTCCATGTTATAAA
1 CATGG-ACTTTTCCGTCAATTCTTCT-TTAATTGCCATGTTATAAA
*
38119994 CATGGACTTTTTCGTCAATTCTTCTTTAATTGCCATGTTATAAA
1 CATGGACTTTTCCGTCAATTCTTCTTTAATTGCCATGTTATAAA
38120038 CATGGAC
1 CATGGAC
38120045 CTTGAGATAT
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
44 42 0.88
45 6 0.12
ACGTcount: A:0.25, C:0.20, G:0.11, T:0.44
Consensus pattern (44 bp):
CATGGACTTTTCCGTCAATTCTTCTTTAATTGCCATGTTATAAA
Found at i:38130594 original size:18 final size:18
Alignment explanation
Indices: 38130571--38130612 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
38130561 TCCTACTATC
*
38130571 ACATCATTCTCTATTGTG
1 ACATCATACTCTATTGTG
*
38130589 ACATCATAGTCTATTGTG
1 ACATCATACTCTATTGTG
38130607 ACATCA
1 ACATCA
38130613 GTCCTAATGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (18 bp):
ACATCATACTCTATTGTG
Found at i:38133114 original size:27 final size:26
Alignment explanation
Indices: 38133054--38133166 Score: 74
Period size: 27 Copynumber: 4.3 Consensus size: 26
38133044 CATAAAAGAA
* *
38133054 TTCCTTTCATAAT-CTGCCACAAAGGCG
1 TTCCTTTCATATTAC-GCCAC-AAGGTG
*
38133081 TT-TTTTCCATATTACGCCACAAGGTG
1 TTCCTTT-CATATTACGCCACAAGGTG
* *
38133107 TTCCTTTCATATT--G-CAAAAAGTG
1 TTCCTTTCATATTACGCCACAAGGTG
* *
38133130 CATTCCTTTCATATTACACCACAAAGGCG
1 --TTCCTTTCATATTACGCCAC-AAGGTG
38133159 TTCCTTTC
1 TTCCTTTC
38133167 TAAGTGTGTT
Statistics
Matches: 67, Mismatches: 10, Indels: 18
0.71 0.11 0.19
Matches are distributed among these distances:
23 7 0.10
24 1 0.01
25 13 0.19
26 16 0.24
27 23 0.34
28 3 0.04
29 4 0.06
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TTCCTTTCATATTACGCCACAAGGTG
Found at i:38135114 original size:32 final size:32
Alignment explanation
Indices: 38135066--38135159 Score: 116
Period size: 32 Copynumber: 2.9 Consensus size: 32
38135056 CCATAAGTAC
*
38135066 AGTAATATGATTGGCACAAAGTCATCAGTAAA
1 AGTAATATGATCGGCACAAAGTCATCAGTAAA
* * * *
38135098 AGTGATATGATCGGCACACAGCCATCAGTAAC
1 AGTAATATGATCGGCACAAAGTCATCAGTAAA
* * *
38135130 GGTAATATGATCAGCACAAAGTCATTAGTA
1 AGTAATATGATCGGCACAAAGTCATCAGTA
38135160 GCATCGCAGC
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 51 1.00
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.23
Consensus pattern (32 bp):
AGTAATATGATCGGCACAAAGTCATCAGTAAA
Found at i:38135214 original size:26 final size:26
Alignment explanation
Indices: 38135162--38135215 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
38135152 CATTAGTAGC
*
38135162 ATCGCAGCAAAGATGCCAATAACAGT
1 ATCGCAGCAAAGATACCAATAACAGT
* * * *
38135188 ATCGTAGCAAAGCTACCAGTAATAGT
1 ATCGCAGCAAAGATACCAATAACAGT
38135214 AT
1 AT
38135216 AAGTGGCCAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (26 bp):
ATCGCAGCAAAGATACCAATAACAGT
Found at i:38135368 original size:24 final size:24
Alignment explanation
Indices: 38135341--38135419 Score: 104
Period size: 24 Copynumber: 3.3 Consensus size: 24
38135331 TCATGCTCAG
*
38135341 AATCAGTCATACAAATCACAGATA
1 AATCAGTCATACAAATCACAGACA
*
38135365 AATCAGTCATACCAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
* ** *
38135389 AATCAGCCATTTAAATCACAAACA
1 AATCAGTCATACAAATCACAGACA
38135413 AATCAGT
1 AATCAGT
38135420 TATTTACATC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.48, C:0.24, G:0.08, T:0.20
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAGACA
Found at i:38135437 original size:24 final size:24
Alignment explanation
Indices: 38135353--38135438 Score: 82
Period size: 24 Copynumber: 3.6 Consensus size: 24
38135343 TCAGTCATAC
* * **
38135353 AAATCACAGATAAATCAGTCATAC
1 AAATCACAGACAAATCAGCCATTT
*
38135377 CAATCACAGACAAATCAGCCATTT
1 AAATCACAGACAAATCAGCCATTT
* **
38135401 AAATCACAAACAAATCAGTTATTT
1 AAATCACAGACAAATCAGCCATTT
* *
38135425 ACATCACGGACAAA
1 AAATCACAGACAAA
38135439 ACAATCATTT
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.48, C:0.23, G:0.08, T:0.21
Consensus pattern (24 bp):
AAATCACAGACAAATCAGCCATTT
Found at i:38138424 original size:131 final size:130
Alignment explanation
Indices: 38138223--38138576 Score: 467
Period size: 131 Copynumber: 2.7 Consensus size: 130
38138213 AACAGCTTGT
* * *
38138223 TGATTTAATATCGTAGTTGATATTATTAGGGTTCGTTGATTCAAGATTGCAACCTAAGTTCATTC
1 TGATTTAATATCGTAGTTGATATTATTAAGGTTCGCTGATTCAAGATAGCAACCTAAGTTCATT-
* * * **
38138288 AATTCAAGATCATGACCAATTTTATTCGAGTTAGCTTATTTAATATTGCTAATGC-AAACATCTC
65 AATTCAAGATCATGAACAATTTTATTCGAGTTAGCTAATTTAATATCGCTAAT-CTAAACAGATC
*
38138352 GC
129 AC
** * *
38138354 TGATTTAATATCCCAATTGATATTATTAAGGTTCGCTGATTCAAGATCGCAACCTAAGTTCATTA
1 TGATTTAATATCGTAGTTGATATTATTAAGGTTCGCTGATTCAAGATAGCAACCTAAGTTCATTA
* * * *
38138419 GATTCAAAATCATGAACAATTTTATTCGAGTTAGCTAATTTAATATCGTTACTCTGAACAGATCA
66 -ATTCAAGATCATGAACAATTTTATTCGAGTTAGCTAATTTAATATCGCTAATCTAAACAGATCA
*
38138484 T
130 C
* *
38138485 TGATTTAATATCGTGGTTGATATTATTAAGGTTCACTGATTCAAGATAGCAACCTAAGTTCATTT
1 TGATTTAATATCGTAGTTGATATTATTAAGGTTCGCTGATTCAAGATAGCAACCTAAGTTCA-TT
*
38138550 AATTTCAAGATCATGAATAATTTTATT
65 AA-TTCAAGATCATGAACAATTTTATT
38138577 TTAGTCAATT
Statistics
Matches: 194, Mismatches: 25, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
130 2 0.01
131 167 0.86
132 25 0.13
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (130 bp):
TGATTTAATATCGTAGTTGATATTATTAAGGTTCGCTGATTCAAGATAGCAACCTAAGTTCATTA
ATTCAAGATCATGAACAATTTTATTCGAGTTAGCTAATTTAATATCGCTAATCTAAACAGATCAC
Found at i:38138701 original size:263 final size:262
Alignment explanation
Indices: 38138222--38138701 Score: 613
Period size: 263 Copynumber: 1.8 Consensus size: 262
38138212 AAACAGCTTG
* ** *
38138222 TTGATTTAATATCGTAGTTGATATTATTAGGGTTCGTTGATTCAAGATTGCAACCTAAGTTCATT
1 TTGATTTAATATCGTAGTTGATATTATTAAGGTTCACTGATTCAAGATAGCAACCTAAGTTCATT
* * * * ** * * *
38138287 CAATTCAAGATCATGACCAATTTTATTCGAGTTAGCTTATTTAATATTGCTAATGCAAACATCTC
66 CAATTCAAGATCATGAACAATTTTATTCGAGTCAGATTATTTAAAATCACTAATCCAAACAGCTA
* * * *
38138352 GCTGATTTAATATCCCAATTGATATTATTAAGGTTCGCTGATTCAAGATCGCAACCTAAGTTCAT
131 GCTGATTTAAGATCCCAACTAATATTATTAAGGTTCGCTGATTCAAGATCGCAACCTAAATTCAT
*
38138417 TAGATTCAAAATCATGAACAATTTTATTCGAGTTAGCTAATTTAATATCGTTACTCTGAACAGAT
196 TAGATTCAAAATCACGAACAATTTTATTCGAGTTAGCTAATTTAATATCGTTACTCTGAACAGAT
38138482 CA
261 CA
*
38138484 TTGATTTAATATCGTGGTTGATATTATTAAGGTTCACTGATTCAAGATAGCAACCTAAGTTCATT
1 TTGATTTAATATCGTAGTTGATATTATTAAGGTTCACTGATTCAAGATAGCAACCTAAGTTCATT
* * ** **
38138549 TAATTTCAAGATCATGAATAATTTTATTTTAGTCA-ATTGATTTAAAATCACTTCTCCAAACAGC
66 CAA-TTCAAGATCATGAACAATTTTATTCGAGTCAGATT-ATTTAAAATCACTAATCCAAACAGC
* * * * * * *
38138613 TAGCTGATTTAAGATCGCAACTAATATTATTAATGTTTGTTGATTTAATATTGCAACCTAAATTC
129 TAGCTGATTTAAGATCCCAACTAATATTATTAAGGTTCGCTGATTCAAGATCGCAACCTAAATTC
* *
38138678 ATTCA-ATTTAAGATCACGAACAAT
194 ATT-AGATTCAAAATCACGAACAAT
38138702 CCTATCCAAT
Statistics
Matches: 181, Mismatches: 34, Indels: 5
0.82 0.15 0.02
Matches are distributed among these distances:
262 64 0.35
263 116 0.64
264 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (262 bp):
TTGATTTAATATCGTAGTTGATATTATTAAGGTTCACTGATTCAAGATAGCAACCTAAGTTCATT
CAATTCAAGATCATGAACAATTTTATTCGAGTCAGATTATTTAAAATCACTAATCCAAACAGCTA
GCTGATTTAAGATCCCAACTAATATTATTAAGGTTCGCTGATTCAAGATCGCAACCTAAATTCAT
TAGATTCAAAATCACGAACAATTTTATTCGAGTTAGCTAATTTAATATCGTTACTCTGAACAGAT
CA
Found at i:38141749 original size:60 final size:60
Alignment explanation
Indices: 38141654--38141773 Score: 161
Period size: 60 Copynumber: 2.0 Consensus size: 60
38141644 TCGCATACCC
* * *
38141654 TTCTATGAGACTACACGATGTAGGTTCGCATCATCATATA-GGAAAACCCACATCGTATAA
1 TTCTATGAGACCACACGATGTAGGTTCACACCATCATA-ACGGAAAACCCACATCGTATAA
* * * *
38141714 TTCTATGAGACCGCACGATGTATGTTCACACCATCATAACGGCAAACCCACATTGTATAA
1 TTCTATGAGACCACACGATGTAGGTTCACACCATCATAACGGAAAACCCACATCGTATAA
38141774 GCACGTGTTA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
59 1 0.02
60 51 0.98
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (60 bp):
TTCTATGAGACCACACGATGTAGGTTCACACCATCATAACGGAAAACCCACATCGTATAA
Found at i:38145054 original size:22 final size:22
Alignment explanation
Indices: 38145026--38145145 Score: 168
Period size: 22 Copynumber: 5.5 Consensus size: 22
38145016 TTTATTGTTC
*
38145026 AAACATGAGAGCTTAGTACGTG
1 AAACATGAGAGCTTAGTACGTT
38145048 AAACATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
**
38145070 AGCCATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
** * * *
38145092 AGCCATGAGGGTTTAGTTCGTT
1 AAACATGAGAGCTTAGTACGTT
38145114 AAACATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
38145136 AAACATGAGA
1 AAACATGAGA
38145146 TGCAGATGTC
Statistics
Matches: 87, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 87 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (22 bp):
AAACATGAGAGCTTAGTACGTT
Found at i:38147028 original size:22 final size:22
Alignment explanation
Indices: 38146996--38147045 Score: 70
Period size: 19 Copynumber: 2.4 Consensus size: 22
38146986 ATAAATTCTT
*
38146996 TTAATTTTTATT-T-TTGGTTC
1 TTAATTTTTATTATATTGGTCC
38147016 -TAATTTTTATTATATTGGTCC
1 TTAATTTTTATTATATTGGTCC
38147037 TTAATTTTT
1 TTAATTTTT
38147046 TTTAAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 11 0.42
20 1 0.04
21 6 0.23
22 8 0.31
ACGTcount: A:0.20, C:0.06, G:0.08, T:0.66
Consensus pattern (22 bp):
TTAATTTTTATTATATTGGTCC
Found at i:38149392 original size:19 final size:19
Alignment explanation
Indices: 38149370--38149408 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
38149360 AAGTTCATCA
*
38149370 ATACT-TTTAGAAATTAAAT
1 ATACTATTTA-AAATGAAAT
38149389 ATACTATTTAAAATGAAAT
1 ATACTATTTAAAATGAAAT
38149408 A
1 A
38149409 GATATCTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (19 bp):
ATACTATTTAAAATGAAAT
Found at i:38149628 original size:8 final size:8
Alignment explanation
Indices: 38149615--38149643 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
38149605 TAAAAATTAA
38149615 ATTTTTAT
1 ATTTTTAT
38149623 ATTTTTAT
1 ATTTTTAT
38149631 ATTTTTAT
1 ATTTTTAT
38149639 ATTTT
1 ATTTT
38149644 AATTTCATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
ATTTTTAT
Found at i:38150101 original size:28 final size:29
Alignment explanation
Indices: 38150032--38150104 Score: 80
Period size: 28 Copynumber: 2.6 Consensus size: 29
38150022 AAATAAAGCC
38150032 AAATATTATTAA-ATTAATAATCAAATTTA
1 AAAT-TTATTAATATTAATAATCAAATTTA
**
38150061 AAATTTAACAATATTAA-AATCAAATGTTA
1 AAATTTATTAATATTAATAATCAAAT-TTA
*
38150090 TAATTT-TTAATATTA
1 AAATTTATTAATATTA
38150105 TTAAACATAC
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
28 20 0.54
29 17 0.46
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.42
Consensus pattern (29 bp):
AAATTTATTAATATTAATAATCAAATTTA
Found at i:38150255 original size:17 final size:17
Alignment explanation
Indices: 38150235--38150287 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
38150225 AAATTTATTA
38150235 ATATTTTAATAATAAAT
1 ATATTTTAATAATAAAT
* *
38150252 ATATTTTAAAAAT-CAT
1 ATATTTTAATAATAAAT
* *
38150268 AGATATTTCATAATAAAT
1 ATAT-TTTAATAATAAAT
38150286 AT
1 AT
38150288 TTTATAGCAA
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
16 5 0.19
17 19 0.70
18 3 0.11
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (17 bp):
ATATTTTAATAATAAAT
Found at i:38150256 original size:23 final size:22
Alignment explanation
Indices: 38150210--38150256 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
38150200 AGTAATATTC
* * *
38150210 TTAATATTTTATTGAAAATTTA
1 TTAATATTTTAATAAAAATATA
38150232 TTAATATTTTAATAATAAATATA
1 TTAATATTTTAATAA-AAATATA
38150255 TT
1 TT
38150257 TTAAAAATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (22 bp):
TTAATATTTTAATAAAAATATA
Found at i:38153718 original size:13 final size:13
Alignment explanation
Indices: 38153702--38153731 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
38153692 TTGTATTGCA
*
38153702 TGTTTGATTTTCT
1 TGTTTGATTTCCT
38153715 TGTTTGATTTCCT
1 TGTTTGATTTCCT
38153728 TGTT
1 TGTT
38153732 AACCCCTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.10, G:0.17, T:0.67
Consensus pattern (13 bp):
TGTTTGATTTCCT
Found at i:38155374 original size:18 final size:18
Alignment explanation
Indices: 38155324--38155377 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 18
38155314 ATGATGATAG
38155324 TGATTCCGAGGATGGAAG-
1 TGATTCCGAGGAT-GAAGA
* * *
38155342 TGGTTCTGATGATGAAGA
1 TGATTCCGAGGATGAAGA
38155360 TGATTCCGAGGATGAAGA
1 TGATTCCGAGGATGAAGA
38155378 CGAAGAGGTT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
17 4 0.14
18 25 0.86
ACGTcount: A:0.30, C:0.09, G:0.35, T:0.26
Consensus pattern (18 bp):
TGATTCCGAGGATGAAGA
Found at i:38156460 original size:17 final size:17
Alignment explanation
Indices: 38156440--38156474 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
38156430 ATATTAAGAA
38156440 TTTTATTAAATTATATT
1 TTTTATTAAATTATATT
38156457 TTTTATTAAATTATATT
1 TTTTATTAAATTATATT
38156474 T
1 T
38156475 AATAATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTATTAAATTATATT
Found at i:38156495 original size:26 final size:25
Alignment explanation
Indices: 38156462--38156602 Score: 80
Period size: 26 Copynumber: 5.5 Consensus size: 25
38156452 ATATTTTTTA
38156462 TTAAATTATATTTAATAATAATTAT
1 TTAAATTATATTTAATAATAATTAT
* *
38156487 GTTAAATTATATTTTATAGT-ATTA-
1 -TTAAATTATATTTAATAATAATTAT
* *
38156511 -TATATTATGATTT--TAGTAAATTCAT
1 TTAAATTAT-ATTTAATAAT-AATT-AT
* * *
38156536 ATAAGA--ATATTTAATATTAAGAATTTT
1 TTAA-ATTATATTT-A-A-TAATAATTAT
38156563 ATTAAATTATATTTAATAATAATTAT
1 -TTAAATTATATTTAATAATAATTAT
38156589 GTTAAATTATATTT
1 -TTAAATTATATTT
38156603 TATAGTATTA
Statistics
Matches: 89, Mismatches: 11, Indels: 30
0.68 0.08 0.23
Matches are distributed among these distances:
21 4 0.04
22 7 0.08
23 7 0.08
24 5 0.06
25 6 0.07
26 40 0.45
27 4 0.04
28 8 0.09
29 8 0.09
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (25 bp):
TTAAATTATATTTAATAATAATTAT
Found at i:38156523 original size:119 final size:116
Alignment explanation
Indices: 38156262--38156702 Score: 642
Period size: 102 Copynumber: 3.9 Consensus size: 116
38156252 TATACAATAT
* *
38156262 TTTTATAGCATTATATATTATGATTTTAGTAAATTCATATAAGAATAATTAATATTAAGAATTTC
1 TTTTATAGCATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
38156327 ATTAAATTATATATTTTTATTAAATTATATTTAATAATTATGCTAAATTATA
66 ATTAAATTATAT-TTTTTATTAAATTATATTTAATAATTATGCTAAATTATA
* *
38156379 TTTTATAGCATTATATATTATGATTTT-GATAAATTTATATCAGAATATTTAATATTAAGAATTT
1 TTTTATAGCATTATATATTATGATTTTAG-TAAATTCATATAAGAATATTTAATATTAAGAATTT
*
38156443 TATTAAATTATATTTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATA
65 TATTAAATTATATTTTTTATTAAATTATA-TT--TAATAATTATGCTAAATTATA
*
38156498 TTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
1 TTTTATAGCATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
*
38156563 ATTAAA-T-TA-----TA-T---TTA-A--TAATAATTATGTTAAATTATA
66 ATTAAATTATATTTTTTATTAAATTATATTTAATAATTATGCTAAATTATA
* *
38156600 TTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATGTTTAATATTAAGAATTTT
1 TTTTATAGCATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
38156665 ATTAAATTATATATTTTTATTAAATTATATTTAATAAT
66 ATTAAATTATAT-TTTTTATTAAATTATATTTAATAAT
38156703 AATTATGTTA
Statistics
Matches: 295, Mismatches: 9, Indels: 40
0.86 0.03 0.12
Matches are distributed among these distances:
102 91 0.31
103 1 0.00
104 2 0.01
107 1 0.00
108 3 0.01
110 2 0.01
111 2 0.01
112 2 0.01
114 3 0.01
115 1 0.00
116 17 0.06
117 82 0.28
118 1 0.00
119 86 0.29
120 1 0.00
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (116 bp):
TTTTATAGCATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
ATTAAATTATATTTTTTATTAAATTATATTTAATAATTATGCTAAATTATA
Found at i:38156897 original size:39 final size:40
Alignment explanation
Indices: 38156841--38156945 Score: 115
Period size: 44 Copynumber: 2.5 Consensus size: 40
38156831 TTCTCTTATG
* *
38156841 CTATTACACCTCCATTCCATTCAACCAAACACA-AGAA-TA
1 CTATTACGCCTCTATTCCATTCAACCAAACA-ATAGAATTA
*
38156880 CTATTACGCCTCTATTCCATTACATTCAACCAAACAATTGAATTA
1 CTATTACGCCTCTATT-C----CATTCAACCAAACAATAGAATTA
38156925 CTATTACGCCTCTATTCCATT
1 CTATTACGCCTCTATTCCATT
38156946 ACGCTTCTAT
Statistics
Matches: 56, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
39 14 0.25
40 5 0.09
43 1 0.02
44 18 0.32
45 18 0.32
ACGTcount: A:0.34, C:0.30, G:0.04, T:0.31
Consensus pattern (40 bp):
CTATTACGCCTCTATTCCATTCAACCAAACAATAGAATTA
Found at i:38156914 original size:44 final size:45
Alignment explanation
Indices: 38156851--38156947 Score: 153
Period size: 45 Copynumber: 2.2 Consensus size: 45
38156841 CTATTACACC
*
38156851 TCCATTCCATTCAACCAAACACA-AGAA-TACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGAATTACTATTACGCCTCTAT
*
38156895 TCCATTACATTCAACCAAACAATTGAATTACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAATAGAATTACTATTACGCCTCTAT
38156940 TCCATTAC
1 TCCATTAC
38156948 GCTTCTATTA
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.47
45 25 0.51
ACGTcount: A:0.35, C:0.30, G:0.04, T:0.31
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGAATTACTATTACGCCTCTAT
Found at i:38156948 original size:16 final size:16
Alignment explanation
Indices: 38156921--38156963 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
38156911 AAACAATTGA
38156921 ATTACTATTACGCCTCT
1 ATTAC-ATTACGCCTCT
* *
38156938 ATTCCATTACGCTTCT
1 ATTACATTACGCCTCT
38156954 ATTACATTAC
1 ATTACATTAC
38156964 AGCGAACTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.26, C:0.28, G:0.05, T:0.42
Consensus pattern (16 bp):
ATTACATTACGCCTCT
Found at i:38164235 original size:32 final size:32
Alignment explanation
Indices: 38164198--38164266 Score: 93
Period size: 32 Copynumber: 2.2 Consensus size: 32
38164188 AAAAATTATA
* * *
38164198 ATTTTTTGGACAAATTTAAATACTAGTTAAGT
1 ATTTTTTAGACAAATTTAAATACTAATTAAAT
* *
38164230 ATTTTTTAGACAAATTTAAGTATTAATTAAAT
1 ATTTTTTAGACAAATTTAAATACTAATTAAAT
38164262 ATTTT
1 ATTTT
38164267 CGAATAAGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.48
Consensus pattern (32 bp):
ATTTTTTAGACAAATTTAAATACTAATTAAAT
Found at i:38166675 original size:33 final size:32
Alignment explanation
Indices: 38166579--38166694 Score: 121
Period size: 33 Copynumber: 3.6 Consensus size: 32
38166569 TTTATAAAAT
* *
38166579 TAATGAAACATAAAATATTTTAAAAACTTAA-A
1 TAATGATACATAAAATA-TTTAAAAATTTAATA
* *
38166611 T-ATAATA-ATAAATGATATCTAAACAATTTAATA
1 TAATGATACATAAA--ATATTTAAA-AATTTAATA
*
38166644 TAATGATACATGAAATATTTAAATAATTTAATA
1 TAATGATACATAAAATATTTAAA-AATTTAATA
38166677 TAATGATACATAAAATAT
1 TAATGATACATAAAATAT
38166695 AAATTAATCT
Statistics
Matches: 69, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
30 5 0.07
31 9 0.13
32 10 0.14
33 36 0.52
34 5 0.07
35 4 0.06
ACGTcount: A:0.55, C:0.05, G:0.04, T:0.35
Consensus pattern (32 bp):
TAATGATACATAAAATATTTAAAAATTTAATA
Found at i:38169005 original size:5 final size:5
Alignment explanation
Indices: 38168989--38169029 Score: 73
Period size: 5 Copynumber: 8.2 Consensus size: 5
38168979 TCAAAAAATT
*
38168989 TCGAG TCAAG TCGAG TCGAG TCGAG TCGAG TCGAG TCGAG T
1 TCGAG TCGAG TCGAG TCGAG TCGAG TCGAG TCGAG TCGAG T
38169030 TAACGAATCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.22, C:0.20, G:0.37, T:0.22
Consensus pattern (5 bp):
TCGAG
Found at i:38169211 original size:67 final size:70
Alignment explanation
Indices: 38169126--38169256 Score: 171
Period size: 70 Copynumber: 1.9 Consensus size: 70
38169116 CATAACAATA
* * * * *
38169126 TAATGGTTTTGCCTTTTAAC-TTA-ACGA-GTAAATAATTATCAAAAC-ATCATTGTTTTGCCTT
1 TAATAGTTTTGACTTTTAACTTTAGAAGATGTAAACAATTATCAAAACGA-CATAGTTTTGCCTT
38169187 ATAACT
65 ATAACT
*
38169193 TAATAGTTTTGACTTTTAACTTTAGAAGATGTAAACATTTATCAAAACGACATAGTTTTGCCTT
1 TAATAGTTTTGACTTTTAACTTTAGAAGATGTAAACAATTATCAAAACGACATAGTTTTGCCTT
38169257 TTCTTATTCG
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
67 18 0.33
68 3 0.06
69 3 0.06
70 29 0.54
71 1 0.02
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (70 bp):
TAATAGTTTTGACTTTTAACTTTAGAAGATGTAAACAATTATCAAAACGACATAGTTTTGCCTTA
TAACT
Found at i:38170415 original size:19 final size:18
Alignment explanation
Indices: 38170382--38170420 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
38170372 GCAAAAATAA
38170382 AAAGAAAGGAAGAAGAAG
1 AAAGAAAGGAAGAAGAAG
*
38170400 AAAGAATAGTAAGAAGAAG
1 AAAGAA-AGGAAGAAGAAG
38170419 AA
1 AA
38170421 GGGAAATGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.67, C:0.00, G:0.28, T:0.05
Consensus pattern (18 bp):
AAAGAAAGGAAGAAGAAG
Found at i:38173036 original size:25 final size:26
Alignment explanation
Indices: 38173001--38173067 Score: 82
Period size: 27 Copynumber: 2.6 Consensus size: 26
38172991 TACATGTATG
38173001 CTCACACGAGCTGTG-AATCAGAATA
1 CTCACACGAGCTGTGAAATCAGAATA
* ** *
38173026 TTCACACGAGCTGTGCAAATGGGCATA
1 CTCACACGAGCTGTG-AAATCAGAATA
38173053 CTCACACGAGCTGTG
1 CTCACACGAGCTGTG
38173068 GGTCGGAACG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
25 14 0.40
27 21 0.60
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.21
Consensus pattern (26 bp):
CTCACACGAGCTGTGAAATCAGAATA
Found at i:38174176 original size:17 final size:17
Alignment explanation
Indices: 38174162--38174194 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
38174152 CATAGCTATT
38174162 GAATATCTTTAGCTACG
1 GAATATCTTTAGCTACG
38174179 GAATATCTTTAGCTAC
1 GAATATCTTTAGCTAC
38174195 TAGAACAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (17 bp):
GAATATCTTTAGCTACG
Found at i:38183882 original size:21 final size:20
Alignment explanation
Indices: 38183858--38183896 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
38183848 CTTCTATTTT
38183858 CATATAAACATATCAAAATCC
1 CATATAAACAT-TCAAAATCC
* *
38183879 CATATCAACCTTCAAAAT
1 CATATAAACATTCAAAAT
38183897 AAAAAATTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (20 bp):
CATATAAACATTCAAAATCC
Found at i:38184240 original size:25 final size:24
Alignment explanation
Indices: 38184191--38184241 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
38184181 GATGAGATAC
*
38184191 CGACATTTTCATTTCTATCATTTT
1 CGACATTTTCATTTATATCATTTT
* *
38184215 CGACCTTTTCATTTGATATCCTTTT
1 CGACATTTTCATTT-ATATCATTTT
38184240 CG
1 CG
38184242 GATAACATCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.18, C:0.24, G:0.08, T:0.51
Consensus pattern (24 bp):
CGACATTTTCATTTATATCATTTT
Found at i:38191054 original size:19 final size:19
Alignment explanation
Indices: 38191030--38191068 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
38191020 TAACACTCTC
38191030 CTTATTTCCCCTCACATGT
1 CTTATTTCCCCTCACATGT
*
38191049 CTTATTTTCCCTCACATGT
1 CTTATTTCCCCTCACATGT
38191068 C
1 C
38191069 CTGCTGAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.15, C:0.36, G:0.05, T:0.44
Consensus pattern (19 bp):
CTTATTTCCCCTCACATGT
Found at i:38200313 original size:30 final size:30
Alignment explanation
Indices: 38200277--38200334 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
38200267 TCCGAGCTTT
38200277 GGGGCAAAAGT-GTAATTATGTAAAAGTTTA
1 GGGGCAAAA-TCGTAATTATGTAAAAGTTTA
* *
38200307 GGGGCAAAATCGTAATTTTGTCAAAGTT
1 GGGGCAAAATCGTAATTATGTAAAAGTT
38200335 AGAGCCGAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (30 bp):
GGGGCAAAATCGTAATTATGTAAAAGTTTA
Found at i:38200785 original size:50 final size:52
Alignment explanation
Indices: 38200677--38200867 Score: 192
Period size: 50 Copynumber: 3.7 Consensus size: 52
38200667 GAGGATGAGA
* *
38200677 TCCCATGTAAGACCATGTCTGAGACATGGCATTGGAATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGAACCA-T-AG--TATGAGAGG
* *
38200733 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGAACCA-AG-ATGAGCGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGAACCATAGTATGAGAGG
** * * **
38200783 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACC-T-GTATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGAACCATAGTATGAGAGG
* * * *
38200833 TCCCATGTAAGACCATATCTGAGATATGACATTGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGG
38200868 TAGTACAAGA
Statistics
Matches: 114, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
49 1 0.01
50 74 0.65
53 2 0.02
56 37 0.32
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (52 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGAACCATAGTATGAGAGG
Found at i:38204867 original size:18 final size:20
Alignment explanation
Indices: 38204822--38204871 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
38204812 AATTGTATTT
38204822 GAAGTA-AAAAAAAGTATAC
1 GAAGTATAAAAAAAGTATAC
*
38204841 GAAGT-TAAAAAAAGT-TTC
1 GAAGTATAAAAAAAGTATAC
38204859 G-AGTATAAAAAAA
1 GAAGTATAAAAAAA
38204872 AGGTGAACTG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 3 0.11
18 11 0.39
19 14 0.50
ACGTcount: A:0.60, C:0.04, G:0.16, T:0.20
Consensus pattern (20 bp):
GAAGTATAAAAAAAGTATAC
Found at i:38213200 original size:20 final size:20
Alignment explanation
Indices: 38213177--38213246 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
38213167 TTGCACATCG
*
38213177 GTGCCTCTGTTTGCACTTTC
1 GTGCCTCTGTTTGCACTTTA
* *
38213197 GTGCCTCT-ATTACACTTTA
1 GTGCCTCTGTTTGCACTTTA
* *
38213216 GTGTCAT-TGTTTGCACTTTG
1 GTG-CCTCTGTTTGCACTTTA
*
38213236 GTGCCTTTGTT
1 GTGCCTCTGTT
38213247 ACGCATCTAC
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
19 14 0.36
20 25 0.64
ACGTcount: A:0.10, C:0.23, G:0.20, T:0.47
Consensus pattern (20 bp):
GTGCCTCTGTTTGCACTTTA
Found at i:38218191 original size:14 final size:14
Alignment explanation
Indices: 38218169--38218198 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
38218159 ACAAAGTATA
*
38218169 ATAATGAAACCATC
1 ATAAGGAAACCATC
38218183 ATAAGGAAACCATC
1 ATAAGGAAACCATC
38218197 AT
1 AT
38218199 GATTTACTCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.20, G:0.10, T:0.20
Consensus pattern (14 bp):
ATAAGGAAACCATC
Found at i:38221045 original size:31 final size:32
Alignment explanation
Indices: 38221007--38221069 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
38220997 AGGCAAATTA
38221007 CAAGAGTAATTG-AATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAAATCCTAATAAAACTCTTT
38221038 CAAGAGTAATTGAAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAAATCCTAATAAAACTCTTT
38221070 AAAATTATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 12 0.39
32 19 0.61
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.32
Consensus pattern (32 bp):
CAAGAGTAATTGAAATCCTAATAAAACTCTTT
Found at i:38221949 original size:16 final size:16
Alignment explanation
Indices: 38221917--38221946 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
38221907 AACAGTTTAA
38221917 AAAATAATAGTATAAT
1 AAAATAATAGTATAAT
38221933 AAAATAATA-TATAA
1 AAAATAATAGTATAA
38221947 ATAGGTACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (16 bp):
AAAATAATAGTATAAT
Found at i:38222973 original size:18 final size:19
Alignment explanation
Indices: 38222952--38222992 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
38222942 CCCTGGTGGT
*
38222952 GGCGTGGC-TCGGCTCGGA
1 GGCGTGGCTTCGGCACGGA
*
38222970 GGCGTGGCTTTGGCACGGA
1 GGCGTGGCTTCGGCACGGA
38222989 GGCG
1 GGCG
38222993 CAACACGCGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.07, C:0.24, G:0.51, T:0.17
Consensus pattern (19 bp):
GGCGTGGCTTCGGCACGGA
Found at i:38226474 original size:23 final size:23
Alignment explanation
Indices: 38226448--38226492 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
38226438 CTTTTTTTGT
*
38226448 TTTTAATTTTAACTAAA-CAATTC
1 TTTTAATTTAAAC-AAATCAATTC
*
38226471 TTTTTATTTAAACAAATCAATT
1 TTTTAATTTAAACAAATCAATT
38226493 AACCTTGTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.40, C:0.11, G:0.00, T:0.49
Consensus pattern (23 bp):
TTTTAATTTAAACAAATCAATTC
Found at i:38229128 original size:41 final size:41
Alignment explanation
Indices: 38229043--38229139 Score: 117
Period size: 41 Copynumber: 2.4 Consensus size: 41
38229033 TTTGATTAGC
* * * *
38229043 ACTAAGTGTGTG-AACTAAATTATGAGGTTGAATATCGAGC
1 ACTAAGTGTGCGAAACTAAATCATGAGGTTAAATATCGAGA
* *
38229083 ACTAAGTGTGCGAAACTAAATCATGATGTTAAATGA-CGGGA
1 ACTAAGTGTGCGAAACTAAATCATGAGGTTAAAT-ATCGAGA
38229124 ACTAAGTGTGCGAAAC
1 ACTAAGTGTGCGAAAC
38229140 CGAGATCAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
40 11 0.22
41 37 0.76
42 1 0.02
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.26
Consensus pattern (41 bp):
ACTAAGTGTGCGAAACTAAATCATGAGGTTAAATATCGAGA
Found at i:38232727 original size:31 final size:33
Alignment explanation
Indices: 38232674--38232734 Score: 90
Period size: 31 Copynumber: 1.9 Consensus size: 33
38232664 ATCAAAACTC
* *
38232674 ATAATTATATATTATTTTGAATTTTTTAAATTT
1 ATAATTATATATTATTTAGAATTTTATAAATTT
38232707 ATAATTATATA-T-TTTAGAATTTTATAAA
1 ATAATTATATATTATTTAGAATTTTATAAA
38232735 AAATATTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 14 0.54
32 1 0.04
33 11 0.42
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (33 bp):
ATAATTATATATTATTTAGAATTTTATAAATTT
Found at i:38240615 original size:26 final size:26
Alignment explanation
Indices: 38240561--38240619 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
38240551 TATTTTCTCG
* *
38240561 AAATTTTACCAAGGGCAAAATTATTA
1 AAATTTTACCAAGGGCAAAATCATCA
* * *
38240587 AAATTTTACCAGGGGTAAAATCGTCA
1 AAATTTTACCAAGGGCAAAATCATCA
38240613 AAATTTT
1 AAATTTT
38240620 GTTGAGGGGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (26 bp):
AAATTTTACCAAGGGCAAAATCATCA
Found at i:38242514 original size:73 final size:73
Alignment explanation
Indices: 38242360--38242495 Score: 211
Period size: 73 Copynumber: 1.9 Consensus size: 73
38242350 GCGACATTTT
* * *
38242360 TGAGAAAGCACAGC-AAAAAACCTAAGCCCAACGATGCCGTTTCCCGAGCTTTCGGGGATTTAGC
1 TGAGAAAGCGCCGCAAAAAAACATAAGCCCAACGATGCCGTTTCCCGAGCTTTCGGGGATTTAGC
38242424 GGAGTTTC
66 GGAGTTTC
***
38242432 TGAGAAAGCGCCGCAAAAAAACATAAGCCCAACGATGCCGTTTTGTGAGCTTTCGGGGATTTAG
1 TGAGAAAGCGCCGCAAAAAAACATAAGCCCAACGATGCCGTTTCCCGAGCTTTCGGGGATTTAG
38242496 TGGCGTCTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
72 12 0.21
73 45 0.79
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (73 bp):
TGAGAAAGCGCCGCAAAAAAACATAAGCCCAACGATGCCGTTTCCCGAGCTTTCGGGGATTTAGC
GGAGTTTC
Found at i:38242736 original size:113 final size:113
Alignment explanation
Indices: 38242411--38243059 Score: 852
Period size: 113 Copynumber: 5.8 Consensus size: 113
38242401 TCCCGAGCTT
* * * * * *
38242411 TCGGGGATTTAGCGGAGTTTCTGAGAAAGCGCCGCAAAAAAACATAAGCCCAACGATGCCGTTTT
1 TCGGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTT
* * * *
38242476 GTGAGCTTTCGGGGATTTAGTGGCGTCTTTAGGAAAGCGTCGCTAATGC
66 CTGAGCTTTCGGGGATTTAGCGGCGT-TTTAAGAAAGCGCCGCTAATGC
* * * * * * *
38242525 TCAGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAAAATACCAAAGCCCAACGATGCCATTTT
1 TCGGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTT
* * * *
38242590 CTAAGCTTTCAGGGATTTAGCGGCGTTTCTAAGAAAGCGCCGCTATTGG
66 CTGAGCTTTCGGGGATTTAGCGGCGTTT-TAAGAAAGCGCCGCTAATGC
* * *
38242639 TCGGGGCTTTAGCGGCGTTTTTGGGAAAGTGCCAC-AAAAAACCTAAGCCCAACGACGTCGTTTT
1 TCGGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTT
* *
38242703 CTGAGCTTTCAGGGATTTAGCGACAGTTTTAAGAAAGCGCCGCTAATGC
66 CTGAGCTTTCGGGGATTTAGCGGC-GTTTTAAGAAAGCGCCGCTAATGC
* * **
38242752 TCGGGGCTTTAGCGGCGTTTTTGGGAAAGTGCCGCAAAAAAACCTAAGCCCAACGATGTTGTTTT
1 TCGGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTT
* *
38242817 CTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGTCGCTATTGC
66 CTGAGCTTTCGGGGATTTAGCGGCG-TTTTAAGAAAGCGCCGCTAATGC
* *
38242866 TC-AGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCTGTTTT
1 TCGGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTT
38242930 CTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGC--A---
66 CTGAGCTTTCGGGGATTTAGCGGCG-TTTTAAGAAAGCGCCGCTAATGC
*
38242974 ----GGCTTTAGCGGTGTTTTTGGGAAAGCGCCGCAAAAAAAACCTAAGCCCAACGACGCCGTTT
1 TCGGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGC-AAAAAAACCTAAGCCCAACGACGCCGTTT
38243035 TCTGAGCTTTCGGGGATTTAGCGGC
65 TCTGAGCTTTCGGGGATTTAGCGGC
38243060 CAAAAATGCT
Statistics
Matches: 485, Mismatches: 45, Indels: 18
0.89 0.08 0.03
Matches are distributed among these distances:
105 30 0.06
106 53 0.11
113 201 0.41
114 201 0.41
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (113 bp):
TCGGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTT
CTGAGCTTTCGGGGATTTAGCGGCGTTTTAAGAAAGCGCCGCTAATGC
Found at i:38242842 original size:227 final size:225
Alignment explanation
Indices: 38242411--38243059 Score: 877
Period size: 227 Copynumber: 2.9 Consensus size: 225
38242401 TCCCGAGCTT
* * * * * *
38242411 TCGGGGATTTAGCGGAGTTTCTGAGAAAGCGCCGCAAAAAAACATAAGCCCAACGATGCCGTTTT
1 TCGGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACG-CGTTTT
* * * *
38242476 GTGAGCTTTCGGGGATTTAGTGGCGTCTTTAGGAAAGCGTCGCTAATGCTCAGGGCTTTAGCGGC
65 CTGAGCTTTCGGGGATTTAGCGGCGT-TTTAAGAAAGCGCCGCTAATGCTC-GGGCTTTAGCGGC
* * * * * * *
38242541 GTTTTTGAGAAAGCGCCGCTAAAATACCAAAGCCCAACGATGCCATTTTCTAAGCTTTCAGGGAT
128 GTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTCGGGGAT
*
38242606 TTAGCGGCGTTTCTAAGAAAGCGCCGCTATTGG
193 TTAGCGGCGTTTCTAAGAAAGCGCCGCTATTGC
* *
38242639 TCGGGGCTTTAGCGGCGTTTTTGGGAAAGTGCCAC-AAAAAACCTAAGCCCAACGACGTCGTTTT
1 TCGGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACG-CGTTTT
* *
38242703 CTGAGCTTTCAGGGATTTAGCGACAGTTTTAAGAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGC
65 CTGAGCTTTCGGGGATTTAGCGGC-GTTTTAAGAAAGCGCCGCTAATGCTC-GGGCTTTAGCGGC
* **
38242768 GTTTTTGGGAAAGTGCCGCAAAAAAACCTAAGCCCAACGATGTTGTTTTCTGAGCTTTCGGGGAT
128 GTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTCGGGGAT
* *
38242833 TTAGCGGCGTTTTTAAGAAAGCGTCGCTATTGC
193 TTAGCGGCGTTTCTAAGAAAGCGCCGCTATTGC
*
38242866 TC-AGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCTGTTTT
1 TCGGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGC-GTTTT
*
38242930 CTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGC--A------GGCTTTAGCGGTG
65 CTGAGCTTTCGGGGATTTAGCGGCG-TTTTAAGAAAGCGCCGCTAATGCTCGGGCTTTAGCGGCG
*
38242987 TTTTTGGGAAAGCGCCGCAAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGAT
129 TTTTTGGGAAAGCGCCGC-AAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTCGGGGAT
38243052 TTAGCGGC
193 TTAGCGGC
38243060 CAAAAATGCT
Statistics
Matches: 377, Mismatches: 39, Indels: 19
0.87 0.09 0.04
Matches are distributed among these distances:
218 29 0.08
219 51 0.14
225 1 0.00
226 31 0.08
227 234 0.62
228 31 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (225 bp):
TCGGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCGTTTTC
TGAGCTTTCGGGGATTTAGCGGCGTTTTAAGAAAGCGCCGCTAATGCTCGGGCTTTAGCGGCGTT
TTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTCGGGGATTTA
GCGGCGTTTCTAAGAAAGCGCCGCTATTGC
Found at i:38242981 original size:32 final size:32
Alignment explanation
Indices: 38242945--38243005 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
38242935 CTTTCGGGGA
38242945 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAGGC
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAGGC
* **
38242977 TTTAGCGGTGTTTTTGGGAAAGCGCCGCA
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCA
38243006 AAAAAAACCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.20, C:0.20, G:0.33, T:0.28
Consensus pattern (32 bp):
TTTAGCGGCGTTTTTAAGAAAGCGCCGCAGGC
Found at i:38243439 original size:15 final size:15
Alignment explanation
Indices: 38243399--38243440 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
38243389 GGGATTGGGA
*
38243399 TTTAAGGTTTAGGGG
1 TTTAAGGGTTAGGGG
*
38243414 -TTAGAGAGTTAGGGG
1 TTTA-AGGGTTAGGGG
38243429 TTTAAGGGTTAG
1 TTTAAGGGTTAG
38243441 ACGTGCTAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
14 3 0.14
15 16 0.73
16 3 0.14
ACGTcount: A:0.24, C:0.00, G:0.40, T:0.36
Consensus pattern (15 bp):
TTTAAGGGTTAGGGG
Found at i:38243679 original size:7 final size:7
Alignment explanation
Indices: 38243656--38243732 Score: 50
Period size: 7 Copynumber: 10.9 Consensus size: 7
38243646 GAATATGGAT
38243656 TTAGGGA
1 TTAGGGA
* *
38243663 TTATGAA
1 TTAGGGA
38243670 TTAGGGA
1 TTAGGGA
* *
38243677 TTATGGT
1 TTAGGGA
38243684 TTAAGGG-
1 TT-AGGGA
38243691 TT-GGGA
1 TTAGGGA
* *
38243697 TTTAAGGT
1 -TTAGGGA
38243705 TTAGGGA
1 TTAGGGA
*
38243712 TTAGGGGT
1 TTA-GGGA
38243720 TTAGGGA
1 TTAGGGA
38243727 TTAGGG
1 TTAGGG
38243733 GTTTAGGGGT
Statistics
Matches: 52, Mismatches: 13, Indels: 10
0.69 0.17 0.13
Matches are distributed among these distances:
5 3 0.06
7 38 0.73
8 11 0.21
ACGTcount: A:0.25, C:0.00, G:0.39, T:0.36
Consensus pattern (7 bp):
TTAGGGA
Found at i:38243713 original size:15 final size:15
Alignment explanation
Indices: 38243683--38243786 Score: 60
Period size: 15 Copynumber: 7.1 Consensus size: 15
38243673 GGGATTATGG
*
38243683 TTTAAGGGTT-GGGA
1 TTTAAGGTTTAGGGA
38243697 TTTAAGGTTTAGGGA
1 TTTAAGGTTTAGGGA
*
38243712 -TTAGGGGTTTAGGGA
1 TTTA-AGGTTTAGGGA
*
38243727 -TTAGGGGTTTAGGG-
1 TTTA-AGGTTTAGGGA
* *
38243741 GTT-AGATGTTAGGG-
1 TTTAAGGT-TTAGGGA
* *
38243755 GTTAAGAG-TTAAGGA
1 TTTAAG-GTTTAGGGA
38243770 TTTAAGGTTTAGGGA
1 TTTAAGGTTTAGGGA
38243785 TT
1 TT
38243787 NNNNNNNNNN
Statistics
Matches: 74, Mismatches: 8, Indels: 15
0.76 0.08 0.15
Matches are distributed among these distances:
13 2 0.03
14 27 0.36
15 45 0.61
ACGTcount: A:0.24, C:0.00, G:0.39, T:0.37
Consensus pattern (15 bp):
TTTAAGGTTTAGGGA
Found at i:38243725 original size:8 final size:8
Alignment explanation
Indices: 38243702--38243743 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
38243692 TGGGATTTAA
38243702 GGTTTA-G
1 GGTTTAGG
*
38243709 GGATTAGG
1 GGTTTAGG
38243717 GGTTTA-G
1 GGTTTAGG
*
38243724 GGATTAGG
1 GGTTTAGG
38243732 GGTTTAGG
1 GGTTTAGG
38243740 GGTT
1 GGTT
38243744 AGATGTTAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
7 11 0.38
8 18 0.62
ACGTcount: A:0.17, C:0.00, G:0.48, T:0.36
Consensus pattern (8 bp):
GGTTTAGG
Found at i:38243745 original size:7 final size:7
Alignment explanation
Indices: 38243705--38243758 Score: 54
Period size: 7 Copynumber: 7.4 Consensus size: 7
38243695 GATTTAAGGT
*
38243705 TTAGGGA
1 TTAGGGG
38243712 TTAGGGG
1 TTAGGGG
*
38243719 TTTAGGGA
1 -TTAGGGG
38243727 TTAGGGG
1 TTAGGGG
38243734 TTTAGGGG
1 -TTAGGGG
**
38243742 TTAGATG
1 TTAGGGG
38243749 TTAGGGG
1 TTAGGGG
38243756 TTA
1 TTA
38243759 AGAGTTAAGG
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
7 25 0.66
8 13 0.34
ACGTcount: A:0.20, C:0.00, G:0.44, T:0.35
Consensus pattern (7 bp):
TTAGGGG
Found at i:38248493 original size:2 final size:2
Alignment explanation
Indices: 38248486--38248510 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
38248476 GACAACATTG
38248486 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
38248511 AAAGGGGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:38249062 original size:95 final size:94
Alignment explanation
Indices: 38248896--38249067 Score: 281
Period size: 95 Copynumber: 1.8 Consensus size: 94
38248886 TTAGCCTGAG
38248896 TGCTTCCTCTTTCATTGCCTCTACGCACTTCCCTTTTTGTTTTTGAAGTTCTAGAGCTGGCAATA
1 TGCTTCCTCTTTCATTGCCTCTACGCACTTCCCTTTTTGTTTTTGAAGTTCTAGAGCTGGCAATA
38248961 CCATTCTTGCAGTAGGTACCTTTTTCTCA
66 CCATTCTTGCAGTAGGTACCTTTTTCTCA
** * * **
38248990 TGCTTCCTCTTTCATTGCCTCTGTGCGCTTCCCTTTTTTGTTTTTGAAGTTCTAGAGTTGGTGAT
1 TGCTTCCTCTTTCATTGCCTCTACGCACTTCCC-TTTTTGTTTTTGAAGTTCTAGAGCTGGCAAT
38249055 ACCATTCTTGCAG
65 ACCATTCTTGCAG
38249068 CACGTACTTT
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
94 30 0.42
95 41 0.58
ACGTcount: A:0.14, C:0.25, G:0.17, T:0.44
Consensus pattern (94 bp):
TGCTTCCTCTTTCATTGCCTCTACGCACTTCCCTTTTTGTTTTTGAAGTTCTAGAGCTGGCAATA
CCATTCTTGCAGTAGGTACCTTTTTCTCA
Found at i:38250516 original size:42 final size:43
Alignment explanation
Indices: 38250452--38250544 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 43
38250442 GTTATGTTTT
* * * *
38250452 TAGTGGCGTTTTTGCGAGAAGCGTCGCTAAAGG-CTTGTTCTA
1 TAGTGGCGTTTGTGCGAAAAGCGCCGCTAAAGGTCTTGATCTA
38250494 TAGTGGCGTTTGTG-GAAAAAGCGCCGCTAAAGGTCTTGATCTA
1 TAGTGGCGTTTGTGCG-AAAAGCGCCGCTAAAGGTCTTGATCTA
*
38250537 TAGCGGCG
1 TAGTGGCG
38250545 ATTTTTCCAG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
41 1 0.02
42 28 0.64
43 15 0.34
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (43 bp):
TAGTGGCGTTTGTGCGAAAAGCGCCGCTAAAGGTCTTGATCTA
Found at i:38250650 original size:42 final size:43
Alignment explanation
Indices: 38250564--38250700 Score: 197
Period size: 43 Copynumber: 3.2 Consensus size: 43
38250554 GGTCTTGAGT
* *
38250564 TATAGCGGCGTTTGTGGGAAAGGCGCTGCTAAAGG-CCTTGATC
1 TATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCC-TGATC
* *
38250607 TATAGCGGCGTTTGT-GCAAATGCGCCGCTAAAGGTCCTGATC
1 TATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATC
* *
38250649 TATAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGATC
1 TATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATC
38250692 TATAGCGGC
1 TATAGCGGC
38250701 ATTTATTTCT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
42 36 0.42
43 49 0.58
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.26
Consensus pattern (43 bp):
TATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATC
Found at i:38252346 original size:16 final size:16
Alignment explanation
Indices: 38252327--38252383 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
38252317 TTTTTATGAT
38252327 TTATATATTTATTACC
1 TTATATATTTATTACC
* *
38252343 TTATATATATATGTACG
1 TTATATATTTAT-TACC
38252360 TATATATATATTA-TACC
1 T-TATATAT-TTATTACC
*
38252377 TTCTATA
1 TTATATA
38252384 CATATTTTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
16 16 0.48
17 8 0.24
18 7 0.21
19 2 0.06
ACGTcount: A:0.35, C:0.11, G:0.04, T:0.51
Consensus pattern (16 bp):
TTATATATTTATTACC
Found at i:38252383 original size:20 final size:20
Alignment explanation
Indices: 38252360--38252415 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
38252350 TATATGTACG
*
38252360 TATATATATATTATACCTTC
1 TATATATATATTATAACTTC
* * *
38252380 TATACATATTTTATAATTTC
1 TATATATATATTATAACTTC
38252400 TATATATATATATATA
1 TATATATATAT-TATA
38252416 TATGAAATCA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
20 25 0.86
21 4 0.14
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (20 bp):
TATATATATATTATAACTTC
Found at i:38252404 original size:56 final size:55
Alignment explanation
Indices: 38252344--38252515 Score: 152
Period size: 56 Copynumber: 3.2 Consensus size: 55
38252334 TTTATTACCT
38252344 TATATATATATGTACGTATATATATATTATACCTTCTATACATATTTTATAATTTC
1 TATATATATATGTAC-TATATATATATTATACCTTCTATACATATTTTATAATTTC
* *
38252400 TATATATATATATA-TATATGAAATCATTAT--CTT-TATGATCTATATATTTATTAA---C
1 TATATATATATGTACTATAT-ATAT-ATTATACCTTCTAT-A-C-ATAT-TTTA-TAATTTC
* *
38252455 T-TATATATATGTAC---ATATATATTATACTTTC-ATCCATATTTTATAATTTC
1 TATATATATATGTACTATATATATATTATACCTTCTATACATATTTTATAATTTC
38252505 TATATATATAT
1 TATATATATAT
38252516 TTTTCTTTAT
Statistics
Matches: 95, Mismatches: 6, Indels: 35
0.70 0.04 0.26
Matches are distributed among these distances:
47 3 0.03
48 4 0.04
49 4 0.04
50 8 0.08
51 12 0.13
52 6 0.06
53 3 0.03
54 20 0.21
55 6 0.06
56 22 0.23
57 4 0.04
58 3 0.03
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (55 bp):
TATATATATATGTACTATATATATATTATACCTTCTATACATATTTTATAATTTC
Found at i:38252438 original size:112 final size:105
Alignment explanation
Indices: 38252313--38252515 Score: 298
Period size: 105 Copynumber: 1.9 Consensus size: 105
38252303 ACATGTAATT
* * *
38252313 ATTATTTTTATGATTTATATATTTATTACCTTATATATATATGTACGTATATATATATTATACCT
1 ATTATCTTTATGATCTATATATTTATTAAC-T-TATATATATGTAC----ATATATATTATACCT
38252378 TCTATACATATTTTATAATTTCTATATATATATATATATATGAAATC
60 TC-ATACATATTTTATAATTTCTATATATATATATATATATGAAATC
* *
38252425 ATTATCTTTATGATCTATATATTTATTAACTTATATATATGTACATATATATTATACTTTCATCC
1 ATTATCTTTATGATCTATATATTTATTAACTTATATATATGTACATATATATTATACCTTCATAC
38252490 ATATTTTATAATTTCTATATATATAT
66 ATATTTTATAATTTCTATATATATAT
38252516 TTTTCTTTAT
Statistics
Matches: 86, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
105 29 0.34
106 16 0.19
110 13 0.15
111 1 0.01
112 27 0.31
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.52
Consensus pattern (105 bp):
ATTATCTTTATGATCTATATATTTATTAACTTATATATATGTACATATATATTATACCTTCATAC
ATATTTTATAATTTCTATATATATATATATATATGAAATC
Found at i:38256501 original size:24 final size:24
Alignment explanation
Indices: 38256474--38256519 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
38256464 AGAACAATCC
* *
38256474 CAAAAGGAAATGCAGGAGCAGCTT
1 CAAAAGCAAATGAAGGAGCAGCTT
*
38256498 CAAAAGCAAATGAATGAGCAGC
1 CAAAAGCAAATGAAGGAGCAGC
38256520 AAAAGATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (24 bp):
CAAAAGCAAATGAAGGAGCAGCTT
Found at i:38260277 original size:44 final size:43
Alignment explanation
Indices: 38260229--38260408 Score: 116
Period size: 44 Copynumber: 4.1 Consensus size: 43
38260219 GAGCAACAGC
38260229 GGAGTAGGTTGAGGATCGTAGATCTTATCTCCCTAAGCAGTAGT
1 GGAGTAGGTTGAGGA-CGTAGATCTTATCTCCCTAAGCAGTAGT
* * * * *
38260273 GGAGTAGATTTAGGACGGCAAATCTTATCTTTCC-AAG-A-TAGT
1 GGAGTAGGTTGAGGAC-GTAGATCTTATC-TCCCTAAGCAGTAGT
* * * ** * * * *
38260315 GGGAAGTAGATTTAAGCCACCAAG-CCTTGTCTCCCTGAGCAGCAGT
1 -GG-AGTAG-GTTGAG-GACGTAGATCTTATCTCCCTAAGCAGTAGT
* *
38260361 GGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGT
1 GGAGTAGGTTGAGGA-CGTAGATCTTATCTCCCTAAGCAGTAGT
38260405 GGAG
1 GGAG
38260409 CAGATCGAAA
Statistics
Matches: 98, Mismatches: 27, Indels: 22
0.67 0.18 0.15
Matches are distributed among these distances:
42 5 0.05
43 12 0.12
44 65 0.66
45 11 0.11
46 5 0.05
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (43 bp):
GGAGTAGGTTGAGGACGTAGATCTTATCTCCCTAAGCAGTAGT
Found at i:38260441 original size:132 final size:132
Alignment explanation
Indices: 38260204--38260484 Score: 447
Period size: 132 Copynumber: 2.1 Consensus size: 132
38260194 GTGAAACACT
*
38260204 AAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTTGAGGATCGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTTGAAGATCGTAGATCTTATCTCCCTAAGCAG
* ** ** *
38260269 TAGTGGAGTAGATTTAGGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAGCCA
66 TAGTGGAGCAGATCGAAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
38260334 CC
131 CC
* * *
38260336 AAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTTGAAGATCGTAGATCTTATCTCCCTAAGCAG
38260401 TAGTGGAGCAGATCGAAAACGGCAAAT-TATATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
66 TAGTGGAGCAGATCGAAAACGGCAAATCT-TATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
38260465 ACC
130 ACC
*
38260468 AAGCCTTGTTTCCCTGA
1 AAGCCTTGTCTCCCTGA
38260485 AGTTGCAGTG
Statistics
Matches: 137, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
131 1 0.01
132 136 0.99
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (132 bp):
AAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTTGAAGATCGTAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCGAAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
CC
Found at i:38260517 original size:132 final size:131
Alignment explanation
Indices: 38260204--38260520 Score: 388
Period size: 132 Copynumber: 2.4 Consensus size: 131
38260194 GTGAAACACT
* * * * ** *
38260204 AAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTTGAGGATCGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGTGGAGCAGATTGAAAATTG-AGATCTTATCTCCCTAAGCAG
* ** ** *
38260269 TAGTGGAGTAGATTTAGGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAGCCA
65 TAGTGGAGCAGATCGAAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
38260334 CC
130 CC
* * *
38260336 AAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGTGGAGCAGATTGAAAATTG-AGATCTTATCTCCCTAAGCAG
38260401 TAGTGGAGCAGATCGAAAACGGCAAAT-TATATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
65 TAGTGGAGCAGATCGAAAACGGCAAATCT-TATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
38260465 ACC
129 ACC
* **
38260468 AAGCCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATT-AAAACCTTG-GATCTTAT
1 AAGCCTTGTCTCCCTG-AGCAGCAGTGGAGCAGATTGAAAA--TTGAGATCTTAT
38260521 ATCTCTGAAG
Statistics
Matches: 165, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
131 1 0.01
132 146 0.88
133 15 0.09
134 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (131 bp):
AAGCCTTGTCTCCCTGAGCAGCAGTGGAGCAGATTGAAAATTGAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCGAAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
C
Found at i:38260893 original size:44 final size:44
Alignment explanation
Indices: 38260841--38261139 Score: 152
Period size: 44 Copynumber: 6.8 Consensus size: 44
38260831 GATCGCATCT
*
38260841 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCACACTAAGTAATCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAATCA
* * ***
38260885 AGTCTTATC-CTCCTGAAGTTGAAGT-GAGGTAGACTGAAGTTGGCGA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTAATC-A
* * * ** *
38260931 A-TCCTGTCTCCTTGAAGTTGCAGTGGAGCAGGTTAAAGTCGAT-A
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGT-AATCA
* * ** * * *
38260975 A-TCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAA--AACCTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAATC-A
** * * * * *
38261017 AGATCTTATCTCTTTGAAGTTGCAGTAGAGTAGA-TCA--CATCG
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAATCA
* *
38261059 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAATCA
* * * *
38261104 AGCCTTATCCCCCTGAAATTGCAGTGG-GCATACTAA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
38261140 ATAAACAAAT
Statistics
Matches: 192, Mismatches: 48, Indels: 31
0.71 0.18 0.11
Matches are distributed among these distances:
40 1 0.01
41 27 0.14
42 4 0.02
43 12 0.06
44 87 0.45
45 56 0.29
46 5 0.03
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (44 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAATCA
Found at i:38261153 original size:217 final size:217
Alignment explanation
Indices: 38260738--38261158 Score: 612
Period size: 217 Copynumber: 1.9 Consensus size: 217
38260728 NNNNNNNNNN
*
38260738 GGAGCAAGTTAAAGTCGATAATCCTATCTTCTTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGA
1 GGAGCAAGTTAAAGTCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGA
* * * *
38260803 TCTTATCTCTCTGAAGTTGTAGAGAGCCGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGG
66 TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCACATCGAGTCTTATCTCCCTGAAGTTGCAGTGG
* * * * * * * *** *
38260868 AGCACACTAAGTAATCAAGTCTTATCCTCCTGAAGTTGAAGTGAGGTAGACTGAAGTTGGCGAAT
131 AGCACACTAAGAAAGCAAGCCTTATCCCCCTGAAATTGAAGTGAGGCAGACTGAAATAAACAAAT
38260933 CCTGTCTCCTTGAAGTTGCAGT
196 CCTGTCTCCTTGAAGTTGCAGT
*
38260955 GGAGCAGGTTAAAGTCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGA
1 GGAGCAAGTTAAAGTCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGA
* *
38261020 TCTTATCTCTTTGAAGTTGCAGTAGAGTAGATCACATCGAGTCTTATCTCCCTGAAGTTGCAGTG
66 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCACATCGAGTCTTATCTCCCTGAAGTTGCAGTG
* * *
38261085 GAGCAGACTCAAGAAAGCAAGCCTTATCCCCCTGAAATTGCAGTG-GGCATACT-AAATAAACAA
130 GAGCACACT-AAGAAAGCAAGCCTTATCCCCCTGAAATTGAAGTGAGGCAGACTGAAATAAACAA
38261148 ATCCTGTCTCC
194 ATCCTGTCTCC
38261159 CTAAGTNNNN
Statistics
Matches: 180, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
217 99 0.55
218 52 0.29
219 29 0.16
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (217 bp):
GGAGCAAGTTAAAGTCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGA
TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCACATCGAGTCTTATCTCCCTGAAGTTGCAGTGG
AGCACACTAAGAAAGCAAGCCTTATCCCCCTGAAATTGAAGTGAGGCAGACTGAAATAAACAAAT
CCTGTCTCCTTGAAGTTGCAGT
Found at i:38261525 original size:22 final size:23
Alignment explanation
Indices: 38261497--38261541 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
38261487 ATGCAATCTT
*
38261497 AGATATGA-TATGTAGTCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
38261519 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
38261542 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.36, C:0.04, G:0.20, T:0.40
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:38261551 original size:22 final size:23
Alignment explanation
Indices: 38261507--38261551 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
38261497 AGATATGATA
* *
38261507 TGTAGTCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
38261530 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
38261552 GTAGATACCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.31, C:0.04, G:0.18, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:38268742 original size:130 final size:132
Alignment explanation
Indices: 38268507--38268895 Score: 595
Period size: 130 Copynumber: 3.0 Consensus size: 132
38268497 GTAAAACACT
* * * *
38268507 AAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTTGAGGATCGTAGATCTTATCTCCCTAAGCAA
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATAGTAGATCTTATCTCCCTAAGCAG
* * *
38268572 TAGTTGAGTAGATCG-AGAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCT
66 TAGTGGAGCAGATCGAAG-ACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
38268636 ACC
130 ACC
* ** * *
38268639 AAGCCTTGTCTCCCTGAGCAGTAGCGGAGTAGGTTGCTGA-AG-ATATCTTATCTCCCTAAGTAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATAGTAGATCTTATCTCCCTAAGCAG
*
38268702 TAGTGGAGCAGATCGAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
38268767 CC
131 CC
*
38268769 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATAGTAGATCTTATCTCCCTAAGCAG
** *
38268834 TAGTGGAGCAGATTAAAGACGGCAAATCTTATTTTTCCAAGATAGTGGGAAGCAGATTTAAG
66 TAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
38268896 AAACCAATCC
Statistics
Matches: 232, Mismatches: 22, Indels: 6
0.89 0.08 0.02
Matches are distributed among these distances:
130 115 0.50
131 4 0.02
132 113 0.49
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.26
Consensus pattern (132 bp):
AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATAGTAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
CC
Found at i:38268863 original size:44 final size:44
Alignment explanation
Indices: 38268683--38268865 Score: 129
Period size: 44 Copynumber: 4.2 Consensus size: 44
38268673 TGCTGAAGAT
* * *
38268683 ATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
* * * **
38268727 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCAA
** * * * * * * ** * *
38268771 GCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
*
38268815 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
38268859 ATCTTAT
1 ATCTTAT
38268866 TTTTCCAAGA
Statistics
Matches: 97, Mismatches: 36, Indels: 12
0.67 0.25 0.08
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
44 79 0.81
45 6 0.06
46 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCAA
Found at i:38268894 original size:132 final size:132
Alignment explanation
Indices: 38268507--38268895 Score: 577
Period size: 132 Copynumber: 3.0 Consensus size: 132
38268497 GTAAAACACT
* * * *
38268507 AAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTTGAGGATCGTAGATCTTATCTCCCTAAGCAA
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATAGTAGATCTTATCTCCCTAAGCAG
* * ** *
38268572 TAGTTGAGTAGA-TCGAGAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCT
66 TAGTGGAGCAGATTAAAG-ACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
38268636 ACC
130 ACC
* ** * *
38268639 AAGCCTTGTCTCCCTGAGCAGTAGCGGAGTAGGTTGCTGA-AG-ATATCTTATCTCCCTAAGTAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATAGTAGATCTTATCTCCCTAAGCAG
** *
38268702 TAGTGGAGCAGATCGAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATTAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
38268767 CC
131 CC
*
38268769 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATAGTAGATCTTATCTCCCTAAGCAG
*
38268834 TAGTGGAGCAGATTAAAGACGGCAAATCTTATTTTTCCAAGATAGTGGGAAGCAGATTTAAG
66 TAGTGGAGCAGATTAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
38268896 AAACCAATCC
Statistics
Matches: 229, Mismatches: 25, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
130 112 0.49
131 4 0.02
132 113 0.49
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.26
Consensus pattern (132 bp):
AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATAGTAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATTAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
CC
Found at i:38268953 original size:43 final size:40
Alignment explanation
Indices: 38268906--38269016 Score: 123
Period size: 43 Copynumber: 2.7 Consensus size: 40
38268896 AAACCAATCC
* *
38268906 TATCTCCCTAAAGTTGCAGTGAGCAGATTACAACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGAGCAGATCAC-ACC-CAG-TCT
* * * * *
38268949 TATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGAGCAGATCACACCCAGTCT
38268989 TATCTCCCTGAAGTTGCAGTGGAGCAGA
1 TATCTCCCTGAAGTTGCAGT-GAGCAGA
38269017 CAAAGTAAAT
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
40 21 0.36
41 9 0.16
42 2 0.03
43 26 0.45
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (40 bp):
TATCTCCCTGAAGTTGCAGTGAGCAGATCACACCCAGTCT
Found at i:38268975 original size:262 final size:262
Alignment explanation
Indices: 38268507--38268978 Score: 623
Period size: 262 Copynumber: 1.8 Consensus size: 262
38268497 GTAAAACACT
*
38268507 AAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTTGAGGATCGTAGATCTTATCTCCCTAAGCAA
1 AAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTTGAAGATCGTAGATCTTATCTCCCTAAGCAA
* * ** **
38268572 TAGTTGAGTAGATCGAGAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCTA
66 TAGTGGAGCAGATAAAGAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGAAA
* * * * * * * *
38268637 CCAAGCCTTGTCTCCCTGAGCAGTAGCGGAGTAGGTTGCTGAAGATATCTTATCTCCCTAAGTAG
131 CCAAGCCTTATCTCCCTGAGAAGTAGCGGAGCAGATTACTAAACAGATCTTATCTCCCTAAGTAG
* *
38268702 TAGTGGAGCAGATCGAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
196 CAGTAGAGCAGATCGAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
38268767 CC
261 CC
* * *
38268769 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTTGAAGATCGTAGATCTTATCTCCCTAAGCAA
*
38268834 TAGTGGAGCAGATTAAAG-ACGGCAAATCTTATTTTTCCAAGATAGTGGGAAGCAGATTTAAGAA
66 TAGTGGAGCAGA-TAAAGAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGAA
* * *
38268898 ACCAATCC-TATCTCCCT-A-AAGTTGCAGTGAGCAGATTAC-AACCACAGATCTTATCTCTCTG
130 ACCAAGCCTTATCTCCCTGAGAAGTAGC-G-GAGCAGATTACTAA--ACAGATCTTATCTCCCT-
*
38268959 AAGTTGCAG-AGAGCAGATCG
190 AAGTAGCAGTAGAGCAGATCG
38268979 CATCTAGTCT
Statistics
Matches: 179, Mismatches: 25, Indels: 12
0.83 0.12 0.06
Matches are distributed among these distances:
259 5 0.03
260 3 0.02
261 16 0.09
262 145 0.81
263 10 0.06
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (262 bp):
AAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTTGAAGATCGTAGATCTTATCTCCCTAAGCAA
TAGTGGAGCAGATAAAGAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGAAA
CCAAGCCTTATCTCCCTGAGAAGTAGCGGAGCAGATTACTAAACAGATCTTATCTCCCTAAGTAG
CAGTAGAGCAGATCGAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
CC
Found at i:38270584 original size:20 final size:20
Alignment explanation
Indices: 38270561--38270608 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
38270551 TATATGTACG
*
38270561 TATATATACATTATACTTTC
1 TATATATACATTATAATTTC
* **
38270581 TATACATATTTTATAATTTC
1 TATATATACATTATAATTTC
*
38270601 TAGATATA
1 TATATATA
38270609 TATATGAAAT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.50
Consensus pattern (20 bp):
TATATATACATTATAATTTC
Found at i:38270608 original size:54 final size:53
Alignment explanation
Indices: 38270547--38270713 Score: 159
Period size: 54 Copynumber: 3.2 Consensus size: 53
38270537 TATTACCTTA
38270547 TATATATATGTACGTATATATACATTATACTTTCTATACATATTTTATAATTTC
1 TATATATATGTACGTATATATACATTATACTTTCTAT-CATATTTTATAATTTC
* * * * *
38270601 TAGATATATATATG-A-A-AT-CATTAT-CTTTATGATCTATATATTTATTAA-CTC
1 TATATATATGTACGTATATATACATTATACTTTCT-ATC-ATAT-TTTA-TAATTTC
* * *
38270652 -ATATATATGTACGTATATATATATTATACTTTCTATCCATATGTTATTATTTC
1 TATATATATGTACGTATATATACATTATACTTTCTAT-CATATTTTATAATTTC
38270705 TATATATAT
1 TATATATAT
38270714 TTTTTTCTTT
Statistics
Matches: 88, Mismatches: 13, Indels: 24
0.70 0.10 0.19
Matches are distributed among these distances:
49 6 0.07
50 22 0.25
51 9 0.10
52 7 0.08
53 8 0.09
54 30 0.34
55 6 0.07
ACGTcount: A:0.35, C:0.10, G:0.05, T:0.50
Consensus pattern (53 bp):
TATATATATGTACGTATATATACATTATACTTTCTATCATATTTTATAATTTC
Found at i:38270704 original size:104 final size:106
Alignment explanation
Indices: 38270514--38270713 Score: 305
Period size: 104 Copynumber: 1.9 Consensus size: 106
38270504 ACATGTAATT
* * * *
38270514 ATTATTTTTATGATTTATATATTTATTACCTTATATATATATGTACGTATATATACATTATACTT
1 ATTATCTTTATGATCTATATATTTATTAACTTACATATATATGTACGTATATATACATTATACTT
*
38270579 TCTATACATATTTTATAATTTCTAGATATATATATGAAATC
66 TCTATACATATGTTATAATTTCTAGATATATATATGAAATC
*
38270620 ATTATCTTTATGATCTATATATTTATTAAC-T-CATATATATGTACGTATATATATATTATACTT
1 ATTATCTTTATGATCTATATATTTATTAACTTACATATATATGTACGTATATATACATTATACTT
* * *
38270683 TCTATCCATATGTTATTATTTCTATATATAT
66 TCTATACATATGTTATAATTTCTAGATATAT
38270714 TTTTTTCTTT
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
104 57 0.67
105 1 0.01
106 27 0.32
ACGTcount: A:0.34, C:0.10, G:0.04, T:0.52
Consensus pattern (106 bp):
ATTATCTTTATGATCTATATATTTATTAACTTACATATATATGTACGTATATATACATTATACTT
TCTATACATATGTTATAATTTCTAGATATATATATGAAATC
Found at i:38270713 original size:20 final size:20
Alignment explanation
Indices: 38270665--38270713 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
38270655 TATATGTACG
38270665 TATATATATATTATACTTTC
1 TATATATATATTATACTTTC
** *
38270685 TATCCATATGTTATTA-TTTC
1 TATATATATATTA-TACTTTC
38270705 TATATATAT
1 TATATATAT
38270714 TTTTTTCTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.55
Consensus pattern (20 bp):
TATATATATATTATACTTTC
Found at i:38277502 original size:46 final size:46
Alignment explanation
Indices: 38277431--38277552 Score: 194
Period size: 46 Copynumber: 2.7 Consensus size: 46
38277421 TTTTCTAAAA
*
38277431 ATTCCATTAGTATATATTAACAAAATTATCTTAAAACTCATTTATT
1 ATTCCATTAGTATATATTAATAAAATTATCTTAAAACTCATTTATT
* *
38277477 GTTCCATTAGTATATATTAATAAAATTATCTTAAAATTCATTTATT
1 ATTCCATTAGTATATATTAATAAAATTATCTTAAAACTCATTTATT
*
38277523 ATTCCATTAG--CATATTAATAAAATTATCTT
1 ATTCCATTAGTATATATTAATAAAATTATCTT
38277553 GGTTTGTATT
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
44 19 0.27
46 52 0.73
ACGTcount: A:0.40, C:0.11, G:0.03, T:0.45
Consensus pattern (46 bp):
ATTCCATTAGTATATATTAATAAAATTATCTTAAAACTCATTTATT
Found at i:38277712 original size:24 final size:23
Alignment explanation
Indices: 38277684--38277745 Score: 79
Period size: 24 Copynumber: 2.7 Consensus size: 23
38277674 ATTTATTAAC
38277684 AATGTTCGTGAACATGTTCAATT
1 AATGTTCGTGAACATGTTCAATT
* **
38277707 ATATGTTCATGAACATGTTCGTTT
1 A-ATGTTCGTGAACATGTTCAATT
*
38277731 AATGTTCGTGGACAT
1 AATGTTCGTGAACAT
38277746 ATTTGATTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
23 13 0.39
24 20 0.61
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.40
Consensus pattern (23 bp):
AATGTTCGTGAACATGTTCAATT
Found at i:38282264 original size:16 final size:16
Alignment explanation
Indices: 38282243--38282274 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
38282233 ATTTTGTTGC
*
38282243 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
38282259 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
38282275 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:38283740 original size:23 final size:23
Alignment explanation
Indices: 38283713--38283765 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
38283703 AGTGTTATTG
*
38283713 ATCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
38283736 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
38283759 ATCAGTG
1 ATCAGTG
38283766 TGACACTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:38290186 original size:26 final size:26
Alignment explanation
Indices: 38290106--38290186 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
38290096 GATGGTCACG
*
38290106 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAAGCTACTA
* * * *
38290132 CGTGTA-T-CGAATG-GTAATGGTCAC-A
1 TGTGTAGTAC-TATGTGCAA-GCT-ACTA
38290157 TGTGTAGTACTATGTGCAAGCTACTA
1 TGTGTAGTACTATGTGCAAGCTACTA
38290183 TGTG
1 TGTG
38290187 AACCAAACAT
Statistics
Matches: 39, Mismatches: 9, Indels: 14
0.63 0.15 0.23
Matches are distributed among these distances:
24 3 0.08
25 14 0.36
26 18 0.46
27 4 0.10
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAAGCTACTA
Found at i:38290244 original size:45 final size:45
Alignment explanation
Indices: 38290193--38290278 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
38290183 TGTGAACCAA
* *
38290193 ACATCATTGATTAGTAAAGTAGTTGCTATGTGCTGATTCCACCGG
1 ACATCATTGATTAATAAAGTAGTTGCTATGTGCTGAATCCACCGG
* *
38290238 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCA
1 ACATCATTGATTAATAAAGTAGTTGCTATGTGCTGAATCCA
38290279 TCGAGTATCT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (45 bp):
ACATCATTGATTAATAAAGTAGTTGCTATGTGCTGAATCCACCGG
Found at i:38295094 original size:50 final size:50
Alignment explanation
Indices: 38295040--38295183 Score: 146
Period size: 49 Copynumber: 2.9 Consensus size: 50
38295030 AGTAATATCA
* * **
38295040 TGATGTCGTGACTTCAACAAGGGAATATTGCAACTATGGAGACAGTAGCT
1 TGATGTCGTGACTTCAACAAGGGAATGTCGCAACTATGGAGACAACAGCT
* * * ** * *
38295090 TGATGTTGCGACTT-TAGTAGGGAATGTCACGACTATGGAGACAACAGCT
1 TGATGTCGTGACTTCAACAAGGGAATGTCGCAACTATGGAGACAACAGCT
* * * *
38295139 TGATGTCGTAACTTCATCAATGGAATGTCGCAACTATAGAGACAA
1 TGATGTCGTGACTTCAACAAGGGAATGTCGCAACTATGGAGACAA
38295184 TTTTCTCAAG
Statistics
Matches: 71, Mismatches: 22, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
49 37 0.52
50 34 0.48
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (50 bp):
TGATGTCGTGACTTCAACAAGGGAATGTCGCAACTATGGAGACAACAGCT
Found at i:38296989 original size:27 final size:28
Alignment explanation
Indices: 38296926--38296989 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
38296916 AATCATATGC
*
38296926 ATGTTATTTGAGTGGTTTTCGTTTGTTA
1 ATGTTATTTGAGTAGTTTTCGTTTGTTA
*
38296954 ATGTTATTTGTGTAGTTTT-GATTT-TTA
1 ATGTTATTTGAGTAGTTTTCG-TTTGTTA
*
38296981 ATTTTATTT
1 ATGTTATTT
38296990 TCCCATTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 12 0.38
28 20 0.62
ACGTcount: A:0.17, C:0.02, G:0.19, T:0.62
Consensus pattern (28 bp):
ATGTTATTTGAGTAGTTTTCGTTTGTTA
Found at i:38298895 original size:23 final size:24
Alignment explanation
Indices: 38298865--38298909 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
38298855 TTTAACAATG
38298865 GTTTAATTA-TT-TTGAGATCCTTA
1 GTTTAATTACTTATTGA-ATCCTTA
38298888 GTTTAATTACTTATTGAATCCT
1 GTTTAATTACTTATTGAATCCT
38298910 CAAGTATTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 9 0.45
24 7 0.35
25 4 0.20
ACGTcount: A:0.27, C:0.11, G:0.11, T:0.51
Consensus pattern (24 bp):
GTTTAATTACTTATTGAATCCTTA
Found at i:38301396 original size:31 final size:31
Alignment explanation
Indices: 38301355--38301413 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
38301345 AAGTTTTTAA
* * *
38301355 ATTTTGAAAAACTCAAAAAATTATAAAAGGT
1 ATTTTCAAAAAATCAAAAAAGTATAAAAGGT
*
38301386 ATTTTCAAAAAATTAAAAAAGTATAAAA
1 ATTTTCAAAAAATCAAAAAAGTATAAAA
38301414 AATATATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.59, C:0.05, G:0.07, T:0.29
Consensus pattern (31 bp):
ATTTTCAAAAAATCAAAAAAGTATAAAAGGT
Found at i:38301404 original size:22 final size:23
Alignment explanation
Indices: 38301367--38301409 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
38301357 TTTGAAAAAC
*
38301367 TCAAAAAATTATAAAAGGTATTT
1 TCAAAAAATTATAAAAAGTATTT
38301390 TCAAAAAATTA-AAAAAGTAT
1 TCAAAAAATTATAAAAAGTAT
38301410 AAAAAATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.58, C:0.05, G:0.07, T:0.30
Consensus pattern (23 bp):
TCAAAAAATTATAAAAAGTATTT
Found at i:38311831 original size:20 final size:20
Alignment explanation
Indices: 38311798--38311840 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
38311788 TAGTAAATTC
38311798 TTTTATTCTGTAATTTAATA
1 TTTTATTCTGTAATTTAATA
*
38311818 TTTT-TTCTGATAATTTACTA
1 TTTTATTCTG-TAATTTAATA
38311838 TTT
1 TTT
38311841 CTCTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.26, C:0.07, G:0.05, T:0.63
Consensus pattern (20 bp):
TTTTATTCTGTAATTTAATA
Found at i:38313565 original size:19 final size:19
Alignment explanation
Indices: 38313543--38313588 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 19
38313533 AAATGTATTT
38313543 ATATATTA-TTATATACATA
1 ATATATTATTTATATA-ATA
38313562 ATATATTATTTATATAATA
1 ATATATTATTTATATAATA
38313581 ATATATTA
1 ATATATTA
38313589 GAGGAGTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
ATATATTATTTATATAATA
Found at i:38314020 original size:22 final size:21
Alignment explanation
Indices: 38313995--38314063 Score: 79
Period size: 22 Copynumber: 3.3 Consensus size: 21
38313985 CGTTTTTTAG
38313995 GGGTTTAGGGTATATTAAATTA
1 GGGTTTAGGGT-TATTAAATTA
*
38314017 GGGTTTAAGGTT-TT-AATTA
1 GGGTTTAGGGTTATTAAATTA
*
38314036 GGGTTTAGTGTTCATTAAATTA
1 GGGTTTAGGGTT-ATTAAATTA
*
38314058 GCGTTT
1 GGGTTT
38314064 TAGTGTTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
19 15 0.38
20 2 0.05
21 3 0.08
22 20 0.50
ACGTcount: A:0.26, C:0.03, G:0.26, T:0.45
Consensus pattern (21 bp):
GGGTTTAGGGTTATTAAATTA
Found at i:38314042 original size:41 final size:42
Alignment explanation
Indices: 38313995--38314073 Score: 108
Period size: 41 Copynumber: 1.9 Consensus size: 42
38313985 CGTTTTTTAG
*
38313995 GGGTTTAGGGTAT-ATTAAATTAGGGTTTAAG-GTTTTAATTA
1 GGGTTTAGGGT-TCATTAAATTAGCGTTTAAGTGTTTTAATTA
* *
38314036 GGGTTTAGTGTTCATTAAATTAGCGTTTTAGTGTTTTA
1 GGGTTTAGGGTTCATTAAATTAGCGTTTAAGTGTTTTA
38314074 TTTAATTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
40 1 0.03
41 26 0.79
42 6 0.18
ACGTcount: A:0.25, C:0.03, G:0.25, T:0.47
Consensus pattern (42 bp):
GGGTTTAGGGTTCATTAAATTAGCGTTTAAGTGTTTTAATTA
Found at i:38314072 original size:42 final size:40
Alignment explanation
Indices: 38313995--38314115 Score: 109
Period size: 42 Copynumber: 2.9 Consensus size: 40
38313985 CGTTTTTTAG
* * *
38313995 GGGTTTAGGGTATATTAAATTAGGGTTTAAGGTTTTAATTA
1 GGGTTTAGTGT-TATTAAATTAGCGTTTTAGGTTTTAATTA
*
38314036 GGGTTTAGTGTTCATTAAATTAGCGTTTTAGTGTTTTATTTA
1 GGGTTTAGTGTT-ATTAAATTAGCGTTTTAG-GTTTTAATTA
*** *
38314078 ATTTTTAAGTGTTTATT-AATTAGTGTTTTAGAGTTTTA
1 GGGTTT-AGTG-TTATTAAATTAGCGTTTTAG-GTTTTA
38314116 GGAAAAATAA
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
40 1 0.01
41 26 0.39
42 31 0.46
43 7 0.10
44 2 0.03
ACGTcount: A:0.26, C:0.02, G:0.21, T:0.51
Consensus pattern (40 bp):
GGGTTTAGTGTTATTAAATTAGCGTTTTAGGTTTTAATTA
Found at i:38314092 original size:19 final size:18
Alignment explanation
Indices: 38314061--38314098 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
38314051 TAAATTAGCG
38314061 TTTTAGTGTTTTATTTAAT
1 TTTTAGTGTTTTA-TTAAT
38314080 TTTTAAGTG-TTTATTAAT
1 TTTT-AGTGTTTTATTAAT
38314098 T
1 T
38314099 AGTGTTTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 8 0.44
20 4 0.22
ACGTcount: A:0.24, C:0.00, G:0.11, T:0.66
Consensus pattern (18 bp):
TTTTAGTGTTTTATTAAT
Found at i:38314231 original size:29 final size:28
Alignment explanation
Indices: 38314198--38314260 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
38314188 TAGTGTTTAG
*
38314198 GGGTTCAAAAAAATTTATTTTGACGAGAT
1 GGGTTCAAAAAAA-TAATTTTGACGAGAT
**
38314227 GGGTTCTGAAAAATAATTTTGACGAGAT
1 GGGTTCAAAAAAATAATTTTGACGAGAT
*
38314255 GAGTTC
1 GGGTTC
38314261 TGAGAAAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 19 0.63
29 11 0.37
ACGTcount: A:0.35, C:0.08, G:0.24, T:0.33
Consensus pattern (28 bp):
GGGTTCAAAAAAATAATTTTGACGAGAT
Found at i:38314247 original size:28 final size:29
Alignment explanation
Indices: 38314214--38314270 Score: 98
Period size: 28 Copynumber: 2.0 Consensus size: 29
38314204 AAAAAAATTT
*
38314214 ATTTTGACGAGATGGGTTCTGA-AAAATA
1 ATTTTGACGAGATGAGTTCTGAGAAAATA
38314242 ATTTTGACGAGATGAGTTCTGAGAAAATA
1 ATTTTGACGAGATGAGTTCTGAGAAAATA
38314271 TCCCAGGAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 21 0.78
29 6 0.22
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32
Consensus pattern (29 bp):
ATTTTGACGAGATGAGTTCTGAGAAAATA
Found at i:38325153 original size:6 final size:6
Alignment explanation
Indices: 38325142--38325166 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
38325132 TATATTATGG
38325142 ATGTAT ATGTAT ATGTAT ATGTAT A
1 ATGTAT ATGTAT ATGTAT ATGTAT A
38325167 ATAGACATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (6 bp):
ATGTAT
Found at i:38326651 original size:44 final size:43
Alignment explanation
Indices: 38326549--38326665 Score: 139
Period size: 44 Copynumber: 2.7 Consensus size: 43
38326539 AGCTCGTATA
* * *
38326549 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAACATCC
* *
38326592 ATGCCACTGTCCCAGACAG-GGTCTTACACGTAAATCTCAA-ATCC
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGT-AATC-AAACATCC
*
38326636 ATGCCAATGTTCCAGACGTGGTCTTACACG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG
38326666 ATAACTCATA
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
43 27 0.43
44 34 0.54
45 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAACATCC
Found at i:38336386 original size:28 final size:28
Alignment explanation
Indices: 38336350--38336532 Score: 83
Period size: 28 Copynumber: 6.3 Consensus size: 28
38336340 AAATATTAAG
*
38336350 AATTTTATTAAATTATATATTTTTATTA
1 AATTATATTAAATTATATATTTTTATTA
* * *
38336378 AATTATATTTAATAATA-ATTATT-TTA
1 AATTATATTAAATTATATATTTTTATTA
*
38336404 AATTATATT---TTATAGTATTATATATTA
1 AATTATATTAAATTATA-TATT-TTTATTA
* * * *
38336431 TGATTTTAGTAAATTCATATAAGAATAATTATATTAA
1 -AATTATATTAAATT-ATAT----AT--TTTTATT-A
* *
38336468 GAATTTTATTAAATTATGTATTTTTATTA
1 -AATTATATTAAATTATATATTTTTATTA
* *
38336497 AATTATATTTAATAATA-ATTATTT-TTA
1 AATTATATTAAATTATATATT-TTTATTA
38336524 AATTATATT
1 AATTATATT
38336533 TTATAGTATT
Statistics
Matches: 119, Mismatches: 19, Indels: 35
0.69 0.11 0.20
Matches are distributed among these distances:
23 4 0.03
25 3 0.03
26 13 0.11
27 23 0.19
28 36 0.30
29 1 0.01
30 6 0.05
31 3 0.03
32 5 0.04
35 2 0.02
36 9 0.08
37 14 0.12
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (28 bp):
AATTATATTAAATTATATATTTTTATTA
Found at i:38336483 original size:17 final size:18
Alignment explanation
Indices: 38336458--38336501 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
38336448 TATAAGAATA
*
38336458 ATTATATTAAG-AATTTT
1 ATTAAATTAAGTAATTTT
* *
38336475 ATTAAATTATGTATTTTT
1 ATTAAATTAAGTAATTTT
38336493 ATTAAATTA
1 ATTAAATTA
38336502 TATTTAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (18 bp):
ATTAAATTAAGTAATTTT
Found at i:38336550 original size:22 final size:24
Alignment explanation
Indices: 38336525--38336571 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
38336515 TTATTTTTAA
38336525 ATTAT-ATTTTA-T-AGTATTATAT
1 ATTATGATTTTAGTAAGT-TTATAT
38336547 ATTATGATTTTAGTAAGTTTATAT
1 ATTATGATTTTAGTAAGTTTATAT
38336571 A
1 A
38336572 AGAATATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 5 0.23
23 6 0.27
24 8 0.36
25 3 0.14
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (24 bp):
ATTATGATTTTAGTAAGTTTATAT
Done.