Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62681010
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1052928 characters in sequence are not A, C, G, or T
File 173 of 210
Found at i:51726471 original size:81 final size:80
Alignment explanation
Indices: 51726352--51726758 Score: 563
Period size: 81 Copynumber: 5.2 Consensus size: 80
51726342 TTAAAACGCC
*
51726352 AGTTATGT-A-TTATGT-A-TTATGTAAG-TACTGTAAGTTATGTAAGTTATGTAAGTTATTTAA
1 AGTTATGTAAGTTATGTAAGTTATGTAAGTTAC--TAATTTATGTAAGTTATGTAAGTTATTTAA
51726412 TTTATGTAAGTTATGTA
64 TTTATGTAAGTTATGTA
*
51726429 AGTTATGTAAGTTATGTAAGTTATGTAAGTTACTACATTTATGTAAGTTATGTAAGATATTTAAT
1 AGTTATGTAAGTTATGTAAGTTATGTAAGTTACTA-ATTTATGTAAGTTATGTAAGTTATTTAAT
51726494 TTATGTAAGTTATGTA
65 TTATGTAAGTTATGTA
* * *
51726510 AGTTATTTAATTTATGTAAGTTATGTAAGTTACTACATTTATGTAAGTTATGTAAGATATTTAAT
1 AGTTATGTAAGTTATGTAAGTTATGTAAGTTACTA-ATTTATGTAAGTTATGTAAGTTATTTAAT
51726575 TTATGTAAGTTATGTA
65 TTATGTAAGTTATGTA
*
51726591 AGTTATGTAAGTTATGTAAG---T-T-A-TT--TAATTTATGTAAGTTATGTAAGTTACTTAATT
1 AGTTATGTAAGTTATGTAAGTTATGTAAGTTACTAATTTATGTAAGTTATGTAAGTTATTTAATT
51726648 TATGTAAGTTATGTA
66 TATGTAAGTTATGTA
* * * *
51726663 AGATATTTAATTTATGTAAGTTATGTAAGTTATTTAATTTATGTAAGTTATGTAAGTTATTTAAT
1 AGTTATGTAAGTTATGTAAGTTATGTAAGTTA-CTAATTTATGTAAGTTATGTAAGTTATTTAAT
*
51726728 TTTTGTAAGTTATGTA
65 TTATGTAAGTTATGTA
51726744 A-TTAATGTAAGTTAT
1 AGTT-ATGTAAGTTAT
51726759 TTAATTTGTG
Statistics
Matches: 298, Mismatches: 16, Indels: 28
0.87 0.05 0.08
Matches are distributed among these distances:
72 60 0.20
73 2 0.01
75 3 0.01
76 2 0.01
77 10 0.03
78 4 0.01
79 6 0.02
80 4 0.01
81 204 0.68
82 3 0.01
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.48
Consensus pattern (80 bp):
AGTTATGTAAGTTATGTAAGTTATGTAAGTTACTAATTTATGTAAGTTATGTAAGTTATTTAATT
TATGTAAGTTATGTA
Found at i:51732238 original size:227 final size:221
Alignment explanation
Indices: 51731727--51732261 Score: 522
Period size: 227 Copynumber: 2.4 Consensus size: 221
51731717 ATGCATGGTT
* * *
51731727 AAGACCAAAACTCTGCGTTTTGGTTAAGATATTTTCCAGCGCTTCTCAAAAAGCACCGCTAATAC
1 AAGACC-AAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTC-AAAA-CGCCGCTAATAC
* * * * ** **
51731792 GATGCTTTAGCGACGATTTCTCGTGGACGCCACTAATTCCAGTATACATCAAGACTTAAACGCTG
63 TATGCTTTAGCGGCG-TTTTTCATGGACGCCACTAATAACAGTATACATCAAGACAAAAACGCTG
* * * * * *
51731857 CGTTTTTGTTAATATATTTTGCGGCGCTTCTCAAAAAGCGCCGCATATGCTTTAGCGGCGTTCCC
127 CGTTTTGGTTAACAAATGTTGCGGCGCTTCTCAAAAAGCGCCGCATATGCCTTAGCGGCGTTCAC
51731922 CCATAAGCGCCACTAAGTCTAATATACCTC
192 CCATAAGCGCCACTAAGTCTAATATACCTC
* ** * * * **
51731952 ATGAAAAAACTCTGCGTTTTGG-TGAGCATATTTTGCGGCGCTTTTTGCCAAGTGCCGCTAATAC
1 AAGACCAAACTCTGCGTTTTGGTTAAG-ATATTTTGCGGCGC-TTCT-CAAAACGCCGCTAATAC
* * * * * *
51732016 TATGATTTAGTGGCGTTTTTTATATG-CGCCACTAATAACTGTATACATCAAGACAAAAACGTTG
63 TATGCTTTAGCGGCGTTTTTCAT-GGACGCCACTAATAACAGTATACATCAAGACAAAAACGCTG
* **
51732080 CGTTTTGGTTACCAAATGTTGCGGCGCTTCTTTGAAAA-CGCCGCTAATACTATGCCTTAGCGGC
127 CGTTTTGGTTAACAAATGTTGCGGCGCTTC-TCAAAAAGCGCCGC----A-TATGCCTTAGCGGC
** * *
51732144 GTGT-ACCC-TTTGCGCCACTAATTCTAGTATACCTC
186 GT-TCACCCATAAGCGCCACTAAGTCTAATATACCTC
*
51732179 AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCCCTCAAAACGCCGCTAATATT
1 AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTT--CTCAAAACGCCGCTAATACT
*
51732244 ATTCTTTAGCGGCGTTTT
64 ATGCTTTAGCGGCGTTTT
51732262 CCCTTAAACG
Statistics
Matches: 246, Mismatches: 50, Indels: 26
0.76 0.16 0.08
Matches are distributed among these distances:
223 71 0.29
224 55 0.22
225 8 0.03
226 3 0.01
227 86 0.35
228 22 0.09
229 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (221 bp):
AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCAAAACGCCGCTAATACTAT
GCTTTAGCGGCGTTTTTCATGGACGCCACTAATAACAGTATACATCAAGACAAAAACGCTGCGTT
TTGGTTAACAAATGTTGCGGCGCTTCTCAAAAAGCGCCGCATATGCCTTAGCGGCGTTCACCCAT
AAGCGCCACTAAGTCTAATATACCTC
Found at i:51732266 original size:113 final size:111
Alignment explanation
Indices: 51731727--51732266 Score: 439
Period size: 114 Copynumber: 4.8 Consensus size: 111
51731717 ATGCATGGTT
* * *
51731727 AAGACCAAAACTCTGCGTTTTGGTTAAGATATTTTCCAGCGCTTCTCAAAAAGCACCGCTAATAC
1 AAGA-CAAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTC-AAAA-CGCCGCTAATAC
* * * * * * *
51731792 GATGCTTTAGCGACGATTTCTCGTGGACGCCACTAATTCCAGTATACATC
63 TATGCTTTAGCGGCGTTTTCCCTTTG-CGCCACTAATTCTAGTATACATC
* * * *
51731842 AAGACTTAAACGCTGCGTTTTTGTTAATATATTTTGCGGCGCTTCTCAAAAAGCGCCGC----A-
1 AAGAC-AAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTC-AAAA-CGCCGCTAATAC
** ** * * *
51731902 TATGCTTTAGCGGCGTTCCCCCATAAGCGCCACTAAGTCTAATATACCTC
63 TATGCTTTAGCGGCGTTTTCCC-TTTGCGCCACTAATTCTAGTATACATC
* * * * * **
51731952 ATGAAAAAACTCTGCGTTTTGG-TGAGCATATTTTGCGGCGCTTTTTGCCAAGTGCCGCTAATAC
1 AAGACAAAACTCTGCGTTTTGGTTAAG-ATATTTTGCGGCGC-TTCT-CAAAACGCCGCTAATAC
* * *** * *
51732016 TATGATTTAGTGGCGTTTTTTATATGCGCCACTAATAACT-GTATACATC
63 TATGCTTTAGCGGCGTTTTCCCTTTGCGCCACTAAT-TCTAGTATACATC
** * * *
51732065 AAGACAAAAACGT-TGCGTTTTGGTTACCAAATGTTGCGGCGCTTCTTTGAAAACGCCGCTAATA
1 AAGAC-AAAAC-TCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTC--TCAAAACGCCGCTAATA
* * * *
51732129 CTATGCCTTAGCGGCGTGTACCCTTTGCGCCACTAATTCTAGTATACCTC
62 CTATGCTTTAGCGGCGTTTTCCCTTTGCGCCACTAATTCTAGTATACATC
* *
51732179 AAGACCAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCCCTCAAAACGCCGCTAATATT
1 AAGACAAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTT--CTCAAAACGCCGCTAATACT
*
51732244 ATTCTTTAGCGGCGTTTTCCCTT
64 ATGCTTTAGCGGCGTTTTCCCTT
51732267 AAACGCCACT
Statistics
Matches: 328, Mismatches: 77, Indels: 42
0.73 0.17 0.09
Matches are distributed among these distances:
108 2 0.01
109 33 0.10
110 43 0.13
111 3 0.01
112 1 0.00
113 94 0.29
114 98 0.30
115 54 0.16
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (111 bp):
AAGACAAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCAAAACGCCGCTAATACTAT
GCTTTAGCGGCGTTTTCCCTTTGCGCCACTAATTCTAGTATACATC
Found at i:51732535 original size:112 final size:113
Alignment explanation
Indices: 51732381--51732613 Score: 301
Period size: 112 Copynumber: 2.1 Consensus size: 113
51732371 GACCAAACTC
* * *
51732381 TGCGTTTTGGTTAACATATGTTGCGGCGCTTTTGGTAAGCGCCGCTAATACTTCCTTTAGCGGCG
1 TGCGTTTTCGTTAACATATGTTGCGGCGCTTTCGGCAAGCGCCGCTAATACTTCCTTTAGCGGC-
* * * *
51732446 GGTTTT-CGTAAGCGCCACTAACGCTAATATACAGCGAGA-TAAAACGA
65 GGTTTTCCATAAACGCCACTAACGCTAATATACAGCAAGACCAAAACGA
* *
51732493 TGCGTTTTCGTTAAGAT-TTTTGCGGCGCTTTCGGCAATGCGCCGCTAATACTTCCTTTAGCGGC
1 TGCGTTTTCGTTAACATATGTTGCGGCGCTTTCGGCAA-GCGCCGCTAATACTTCCTTTAGCGGC
* ** * *
51732557 GTTTTTCCATAAACGCCACTAATTCTAGTATACATCAAGACCAAAACGA
65 GGTTTTCCATAAACGCCACTAACGCTAATATACAGCAAGACCAAAACGA
51732606 TGCGTTTT
1 TGCGTTTT
51732614 GATCTTCAGA
Statistics
Matches: 104, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
111 22 0.21
112 67 0.64
113 15 0.14
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.32
Consensus pattern (113 bp):
TGCGTTTTCGTTAACATATGTTGCGGCGCTTTCGGCAAGCGCCGCTAATACTTCCTTTAGCGGCG
GTTTTCCATAAACGCCACTAACGCTAATATACAGCAAGACCAAAACGA
Found at i:51732949 original size:11 final size:12
Alignment explanation
Indices: 51732929--51732953 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51732919 GTGGAGAAGT
51732929 AAAAGAAAAAAA
1 AAAAGAAAAAAA
51732941 AAAAGAAAAAAA
1 AAAAGAAAAAAA
51732953 A
1 A
51732954 CCTTTATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAAAA
Found at i:51734868 original size:20 final size:20
Alignment explanation
Indices: 51734843--51734894 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
51734833 ACAGTAATTT
51734843 TAATTTTTTATAACATTTA-A
1 TAATTTTTTATAA-ATTTATA
*
51734863 TAATTTTTAAT-AATTTATA
1 TAATTTTTTATAAATTTATA
*
51734882 TACTTTTTTATAA
1 TAATTTTTTATAA
51734895 TTTTCTAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 5 0.19
19 11 0.41
20 11 0.41
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (20 bp):
TAATTTTTTATAAATTTATA
Found at i:51734871 original size:10 final size:10
Alignment explanation
Indices: 51734843--51734898 Score: 51
Period size: 10 Copynumber: 5.7 Consensus size: 10
51734833 ACAGTAATTT
*
51734843 TAATTTTTTA
1 TAATTTTTAA
**
51734853 TAACATTTAA
1 TAATTTTTAA
51734863 TAATTTTTAA
1 TAATTTTTAA
*
51734873 TAATTTAT-A
1 TAATTTTTAA
* *
51734882 TACTTTTTTA
1 TAATTTTTAA
51734892 TAATTTT
1 TAATTTT
51734899 CTAGAAAAAT
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
9 7 0.19
10 29 0.81
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:51735387 original size:21 final size:20
Alignment explanation
Indices: 51735363--51735402 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
51735353 ATATTTTCAT
51735363 TATTTCATAACATATTAATAA
1 TATTTCATAACAT-TTAATAA
* *
51735384 TATTTTATAATATTTAATA
1 TATTTCATAACATTTAATA
51735403 TTTTTTATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (20 bp):
TATTTCATAACATTTAATAA
Found at i:51735395 original size:10 final size:10
Alignment explanation
Indices: 51735335--51735467 Score: 68
Period size: 10 Copynumber: 13.5 Consensus size: 10
51735325 ATTTCTATAT
51735335 TTTTATAATA
1 TTTTATAATA
51735345 -TTTACTTAATA
1 TTTTA--TAATA
51735356 TTTTCAT--TA
1 TTTT-ATAATA
* *
51735365 TTTCATAACA
1 TTTTATAATA
*
51735375 TATTAATAATA
1 T-TTTATAATA
51735386 TTTTATAATA
1 TTTTATAATA
* *
51735396 TTTAAT-ATT
1 TTTTATAATA
*
51735405 TTTTATAATT
1 TTTTATAATA
*
51735415 TTTTA-AAAA
1 TTTTATAATA
51735424 TTTTGAT-ATA
1 TTTT-ATAATA
51735434 TTTTCTATAAT-
1 -TTT-TATAATA
*
51735445 TTTCA-AAT-
1 TTTTATAATA
51735453 TTTTATAATA
1 TTTTATAATA
51735463 TTTTA
1 TTTTA
51735468 ATAACTTTTA
Statistics
Matches: 95, Mismatches: 13, Indels: 30
0.69 0.09 0.22
Matches are distributed among these distances:
8 9 0.09
9 26 0.27
10 34 0.36
11 19 0.20
12 6 0.06
13 1 0.01
ACGTcount: A:0.37, C:0.05, G:0.01, T:0.58
Consensus pattern (10 bp):
TTTTATAATA
Found at i:51735456 original size:29 final size:30
Alignment explanation
Indices: 51735398--51735466 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
51735388 TTATAATATT
*
51735398 TAATATTTTTTATAATTTTTTAAAAATTTTGA
1 TAATATTTTCTATAA-TTTTTAAAAATTTT-A
* *
51735430 T-ATATTTTCTATAA-TTTTCAAATTTTTA
1 TAATATTTTCTATAATTTTTAAAAATTTTA
51735458 TAATATTTT
1 TAATATTTT
51735467 AATAACTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
28 2 0.06
29 18 0.55
31 12 0.36
32 1 0.03
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (30 bp):
TAATATTTTCTATAATTTTTAAAAATTTTA
Found at i:51735471 original size:28 final size:29
Alignment explanation
Indices: 51735421--51735476 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
51735411 AATTTTTTAA
*
51735421 AAATTTTGATATATTTTCTATAA-TTTTC
1 AAATTTTGATATATTTTCAATAACTTTTC
*
51735449 AAATTTTTATAATATTTT-AATAACTTTT
1 AAATTTTGAT-ATATTTTCAATAACTTTT
51735477 AGCTAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (29 bp):
AAATTTTGATATATTTTCAATAACTTTTC
Found at i:51735612 original size:30 final size:30
Alignment explanation
Indices: 51735578--51735651 Score: 94
Period size: 30 Copynumber: 2.5 Consensus size: 30
51735568 ATATAATCCC
51735578 TAAAAATCAATTAAACCCTCCTAAAATAAT
1 TAAAAATCAATTAAACCCTCCTAAAATAAT
* ** *
51735608 TAAAAATCATTTAGGCCCTCGTAAAATAAT
1 TAAAAATCAATTAAACCCTCCTAAAATAAT
* *
51735638 AAAAAATTAATTAA
1 TAAAAATCAATTAA
51735652 CCTCTACACG
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.53, C:0.15, G:0.04, T:0.28
Consensus pattern (30 bp):
TAAAAATCAATTAAACCCTCCTAAAATAAT
Found at i:51738103 original size:3 final size:3
Alignment explanation
Indices: 51738095--51738143 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
51738085 ACATGCTTTG
51738095 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
51738143 C
1 C
51738144 GGATTAGTTC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.35, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:51740683 original size:22 final size:20
Alignment explanation
Indices: 51740630--51740687 Score: 50
Period size: 19 Copynumber: 2.9 Consensus size: 20
51740620 TAATTATTAG
*
51740630 ATTTTCATATTATGTTTACT
1 ATTTTCATTTTATGTTTACT
*
51740650 -TTTTC-TTATTATGTGGTTCCT
1 ATTTTCATT-TTATGT--TTACT
51740671 ATTTTCATTTTAT-TTTA
1 ATTTTCATTTTATGTTTA
51740688 TTTTATGTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 11
0.68 0.07 0.25
Matches are distributed among these distances:
18 1 0.03
19 13 0.43
21 5 0.17
22 9 0.30
23 2 0.07
ACGTcount: A:0.19, C:0.10, G:0.07, T:0.64
Consensus pattern (20 bp):
ATTTTCATTTTATGTTTACT
Found at i:51747722 original size:105 final size:105
Alignment explanation
Indices: 51747537--51747747 Score: 404
Period size: 105 Copynumber: 2.0 Consensus size: 105
51747527 TCTCTAAATG
51747537 TGTTATGAGTTCTAATCTCTAATGGGTGTGTTTTCTAAGGTTATAAAAGAACTTATTTATAGGCT
1 TGTTATGAGTTCTAATCTCTAATGGGTGTGTTTTCTAAGGTTATAAAAGAACTTATTTATAGGCT
*
51747602 AAATTAGTAGGTCAAATAAACTATGCTAATAAATGTTAAA
66 AAATTAGTAGATCAAATAAACTATGCTAATAAATGTTAAA
*
51747642 TGTTATGAGTTCTAATCTCTAATGGGTGTGTTTTCTAAGGTTGTAAAAGAACTTATTTATAGGCT
1 TGTTATGAGTTCTAATCTCTAATGGGTGTGTTTTCTAAGGTTATAAAAGAACTTATTTATAGGCT
51747707 AAATTAGTAGATCAAATAAACTATGCTAATAAATGTTAAA
66 AAATTAGTAGATCAAATAAACTATGCTAATAAATGTTAAA
51747747 T
1 T
51747748 ATATTATATT
Statistics
Matches: 104, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
105 104 1.00
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (105 bp):
TGTTATGAGTTCTAATCTCTAATGGGTGTGTTTTCTAAGGTTATAAAAGAACTTATTTATAGGCT
AAATTAGTAGATCAAATAAACTATGCTAATAAATGTTAAA
Found at i:51751463 original size:22 final size:24
Alignment explanation
Indices: 51751425--51751473 Score: 59
Period size: 22 Copynumber: 2.1 Consensus size: 24
51751415 GTATATATGT
*
51751425 ATATGTATTTACTAAAA-TA-AAA
1 ATATGTATGTACTAAAAGTATAAA
51751447 ATATGTATGTA-TAAAAAGTATAAA
1 ATATGTATGTACT-AAAAGTATAAA
51751471 ATA
1 ATA
51751474 CAAATAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 1 0.04
22 14 0.61
23 2 0.09
24 6 0.26
ACGTcount: A:0.55, C:0.02, G:0.08, T:0.35
Consensus pattern (24 bp):
ATATGTATGTACTAAAAGTATAAA
Found at i:51753376 original size:18 final size:18
Alignment explanation
Indices: 51753364--51753398 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
51753354 ATTTTGTATG
51753364 TTCTTAT-ATTTTTATAT
1 TTCTTATAATTTTTATAT
*
51753381 TTGTTATAATTTTTATAT
1 TTCTTATAATTTTTATAT
51753399 ATTTTGAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (18 bp):
TTCTTATAATTTTTATAT
Found at i:51753439 original size:21 final size:21
Alignment explanation
Indices: 51753415--51753454 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
51753405 AATTACTCTT
*
51753415 ATAAAATTTTATAATTTTTAG
1 ATAAAATTTCATAATTTTTAG
* *
51753436 ATAATATTTCATTATTTTT
1 ATAAAATTTCATAATTTTT
51753455 TAATAATCGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (21 bp):
ATAAAATTTCATAATTTTTAG
Found at i:51758390 original size:89 final size:89
Alignment explanation
Indices: 51758288--51759139 Score: 1319
Period size: 89 Copynumber: 9.6 Consensus size: 89
51758278 TGAAAGATAA
* * *
51758288 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACT
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACT
* ** *
51758353 GGTGGCGAAGCAGGTTAAAGGAAG
66 GGTGGCGAAGCAGATCGAAGAAAG
* *
51758377 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAACAGATCTTGCCTTCCCATACT
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACT
* *
51758442 GGTGGCGAAGCAGATCAAAGAAAA
66 GGTGGCGAAGCAGATCGAAGAAAG
* *
51758466 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAAACAACAGATCTTGTCTTCCCATACT
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACT
* *
51758531 GGTGGCGAAGCAGGTCAAAGAAAG
66 GGTGGCGAAGCAGATCGAAGAAAG
* * *
51758555 TAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTTCCCATACT
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACT
* *
51758620 AGTGGCGAAGCAGATCGAAGAAAA
66 GGTGGCGAAGCAGATCGAAGAAAG
* *
51758644 CAGATCTTGTCTTCATGTACTAGCGTGAAGTAGATCAAAGATAACAGATCTTGCCTTCCCATACT
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACT
*
51758709 GGTGGCGAAACAGATCGAAGAAAG
66 GGTGGCGAAGCAGATCGAAGAAAG
*
51758733 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATACT
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACT
*
51758798 GGTGGCGAAGTAGATCGAAGAAAG
66 GGTGGCGAAGCAGATCGAAGAAAG
* *
51758822 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATATT
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACT
*
51758887 GGTGGCGAAGTAGATCGAAGAAAG
66 GGTGGCGAAGCAGATCGAAGAAAG
* *
51758911 CAAATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGAAAACAGATCTTGTCTTCCCATACT
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACT
* *
51758976 GGTGGCGAAGTAGATCGAAGAAAA
66 GGTGGCGAAGCAGATCGAAGAAAG
* * * *
51759000 CAGATATTGTCTTCATATACTGGCGTGAAGTAGATGAAAGATAACAGATCTTGTCTTCCCATATT
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACT
*
51759065 GGTGGCGAAGTAGATCGAAGAAAG
66 GGTGGCGAAGCAGATCGAAGAAAG
* * * *
51759089 CAAATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGA-AAGCAGATCT
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAA-CAGATCT
51759140 ATCTCCCTGG
Statistics
Matches: 709, Mismatches: 53, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
88 2 0.00
89 707 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (89 bp):
CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACT
GGTGGCGAAGCAGATCGAAGAAAG
Found at i:51759224 original size:44 final size:43
Alignment explanation
Indices: 51759117--51759224 Score: 137
Period size: 44 Copynumber: 2.5 Consensus size: 43
51759107 ATTGGCATGA
* *
51759117 AGTAGATCGAAGAAAGCAGATCTATCTCCCTGGGCAGCAGTGG
1 AGTAGATCGAAGATAGCAGATCTATCTCCCTAGGCAGCAGTGG
* * *
51759160 AATAGATTGAAGATTA-CAGATCTTATCTCCCTAGGCAGTAGTGG
1 AGTAGATCGAAGA-TAGCAGATC-TATCTCCCTAGGCAGCAGTGG
*
51759204 AGTAGATCGAAGATGGCAGAT
1 AGTAGATCGAAGATAGCAGAT
51759225 TTTACTTCCC
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
43 18 0.33
44 36 0.67
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (43 bp):
AGTAGATCGAAGATAGCAGATCTATCTCCCTAGGCAGCAGTGG
Found at i:51760679 original size:3 final size:3
Alignment explanation
Indices: 51760673--51760722 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
51760663 ACTTTTTTTG
**
51760673 TTA TTA TTA TTA -TA TTA -TA CCA TTA TTA TTTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
*
51760717 ATA TTA
1 TTA TTA
51760723 CACTTTTTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
2 4 0.10
3 32 0.82
4 3 0.08
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:51760713 original size:16 final size:17
Alignment explanation
Indices: 51760673--51760722 Score: 59
Period size: 16 Copynumber: 3.0 Consensus size: 17
51760663 ACTTTTTTTG
51760673 TTATTATTATTATATTA
1 TTATTATTATTATATTA
**
51760690 -TACCATTATTAT-TTA
1 TTATTATTATTATATTA
51760705 TTATTATTATTAATATTA
1 TTATTATTATT-ATATTA
51760723 CACTTTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
15 3 0.12
16 18 0.69
17 2 0.08
18 3 0.12
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (17 bp):
TTATTATTATTATATTA
Found at i:51760716 original size:19 final size:19
Alignment explanation
Indices: 51760673--51760722 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
51760663 ACTTTTTTTG
51760673 TTATTATTATTATATTATA
1 TTATTATTATTATATTATA
**
51760692 CCATTATTATT-TATTATTA
1 TTATTATTATTATATTA-TA
*
51760711 TTATTAATATTA
1 TTATTATTATTA
51760723 CACTTTTTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (19 bp):
TTATTATTATTATATTATA
Found at i:51760819 original size:31 final size:31
Alignment explanation
Indices: 51760782--51760841 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
51760772 TTTTAATTTC
*
51760782 AAAAACGTTTTGCTTTTGTAAATATATATCA
1 AAAAACGTTTTACTTTTGTAAATATATATCA
51760813 AAAAACGTTTTACTTTTGTAAATATATAT
1 AAAAACGTTTTACTTTTGTAAATATATAT
51760842 ATGTATATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.43
Consensus pattern (31 bp):
AAAAACGTTTTACTTTTGTAAATATATATCA
Found at i:51760899 original size:2 final size:2
Alignment explanation
Indices: 51760892--51760920 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
51760882 TATTTTACAA
51760892 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
51760921 AATGTACATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:51762202 original size:23 final size:23
Alignment explanation
Indices: 51762171--51762215 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
51762161 ATATAAAAGA
* *
51762171 ATGTTCATAAAAAAAATGTATAC
1 ATGTACATAAAAAAAATATATAC
*
51762194 ATGTACATATAAAAAATATATA
1 ATGTACATAAAAAAAATATATA
51762216 TAGGTTTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.31
Consensus pattern (23 bp):
ATGTACATAAAAAAAATATATAC
Found at i:51763983 original size:44 final size:44
Alignment explanation
Indices: 51763923--51764044 Score: 156
Period size: 44 Copynumber: 2.8 Consensus size: 44
51763913 ACCCGATGCG
* * * * *
51763923 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT-GATTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATAGACTTTA
* *
51763967 ATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATAGGCTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATAGACTTTA
*
51764011 ATCTGCTCCACTGCAACTTCAGGGAGACAAGATT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
51764045 TATATCTTCG
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 2 0.03
44 66 0.97
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATAGACTTTA
Found at i:51764097 original size:44 final size:45
Alignment explanation
Indices: 51764035--51764837 Score: 583
Period size: 44 Copynumber: 18.4 Consensus size: 45
51764025 AACTTCAGGG
*
51764035 AGACAAGAT-T-TATATCTTCGATCTACTTCATGCCAATACATGA
1 AGACAAGATCTGTCTATCTTCGATCTACTTCATGCCAATACATGA
* *
51764078 AGACAATATCTGTC-ATCTTCGATCTACTTCACGCCAATACATGA
1 AGACAAGATCTGTCTATCTTCGATCTACTTCATGCCAATACATGA
* *
51764122 AGACAAGATCTG-CTA-CATTTGATCTACTTCATGCCGATACATGA
1 AGACAAGATCTGTCTATC-TTCGATCTACTTCATGCCAATACATGA
* * *
51764166 AGACAAGATCT-TCTACCCTT-GATCTACTTTATGCCGATACATGA
1 AGACAAGATCTGTCTA-TCTTCGATCTACTTCATGCCAATACATGA
* * * *
51764210 AGACAAGATCCGT-TTTCTTTGATCTACTTCACGCCAATACATGA
1 AGACAAGATCTGTCTATCTTCGATCTACTTCATGCCAATACATGA
* * * * *
51764254 AGACAAGACCT-TCTACCTTTGATCTACTTTATGCCGATACATGA
1 AGACAAGATCTGTCTATCTTCGATCTACTTCATGCCAATACATGA
* * * ** * *
51764298 AGAAAAGATCT-TCTACCTTTGATCTACTTCATATCGATATATGA
1 AGACAAGATCTGTCTATCTTCGATCTACTTCATGCCAATACATGA
* * *
51764342 AGACAAGAT-TCGT-TTTCTTCGATTTACTTCACGCCAATACATGA
1 AGACAAGATCT-GTCTATCTTCGATCTACTTCATGCCAATACATGA
* * * *
51764386 AGACAAGATCTG-CTACCTTTGATCTACTTCACGCCGATACATGA
1 AGACAAGATCTGTCTATCTTCGATCTACTTCATGCCAATACATGA
* * ** * ***
51764430 AGACAAGATCAGT-TTTCTTCGATCTACTTCACCACCAGTATGGGA
1 AGACAAGATCTGTCTATCTTCGATCTACTTCA-TGCCAATACATGA
* * * * * *
51764475 AGACAAGATCTG-CTATCTTCAATCCACTTCGCTACCAATATAGGA
1 AGACAAGATCTGTCTATCTTCGATCTACTTC-ATGCCAATACATGA
* * * * *
51764520 AGATAGGATTTG-CTTTCTTCGATCTACTTCACGCCAATACATGA
1 AGACAAGATCTGTCTATCTTCGATCTACTTCATGCCAATACATGA
* * * * ***
51764564 AGACAAGATTTG-CTTTCTTTGATCTACTTCACTACCAATATGGGA
1 AGACAAGATCTGTCTATCTTCGATCTACTTCA-TGCCAATACATGA
* * * * *
51764609 AGAC-A-A---G---ATCTTCGATCCACTTCCTACCAATATAGGA
1 AGACAAGATCTGTCTATCTTCGATCTACTTCATGCCAATACATGA
* **
51764646 AGACAGGATCTG-CTATCTTCGATCTACTTCACACCAATACATGA
1 AGACAAGATCTGTCTATCTTCGATCTACTTCATGCCAATACATGA
* * ***
51764690 AGACAAGATCTAT-TTTCTTCGATCTACTTC--GCCACCAGTATGGGA
1 AGACAAGATCTGTCTATCTTCGATCTACTTCATGCCA--A-TACATGA
* * * * * *
51764735 AGACAAGATCTG--TACCTTCGATCCACTTCCTACCAATATAGGA
1 AGACAAGATCTGTCTATCTTCGATCTACTTCATGCCAATACATGA
* *
51764778 AGACAGGACCTG-CTATCTTCGATCTACTTCATGCCAATACATGA
1 AGACAAGATCTGTCTATCTTCGATCTACTTCATGCCAATACATGA
*
51764822 AGATAAGATCTG-CTAT
1 AGACAAGATCTGTCTAT
51764838 TTTTAACCTA
Statistics
Matches: 613, Mismatches: 114, Indels: 65
0.77 0.14 0.08
Matches are distributed among these distances:
37 16 0.03
38 13 0.02
39 1 0.00
40 1 0.00
42 4 0.01
43 32 0.05
44 443 0.72
45 99 0.16
46 4 0.01
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (45 bp):
AGACAAGATCTGTCTATCTTCGATCTACTTCATGCCAATACATGA
Found at i:51764454 original size:132 final size:129
Alignment explanation
Indices: 51764035--51764832 Score: 655
Period size: 132 Copynumber: 6.1 Consensus size: 129
51764025 AACTTCAGGG
* * * *
51764035 AGACAAGAT-TTATATCTTCGATCTACTTCATGCCAATACATGAAGACAATATCTGTCATCTTCG
1 AGACAAGATCTT-T-TCTTCGATCTACTTCATACCAATATATGAAGACAAGATC-GTTATCTTCG
* *
51764099 ATCTACTTCACGCCAATACATGAAGACAAGATCTGCTACATTTGATCTACTTCATGCCGATACAT
63 ATCTACTTCACGCCAATACATGAAGACAAGATCTGCTACCTTTGATCTACTTCACGCCGATACAT
51764164 GA
128 GA
* * * * * * *
51764166 AGACAAGATCTTCTACCCTT-GATCTACTTTATGCCGATACATGAAGACAAGATCCGTTTTCTTT
1 AGACAAGATCTT-T--TCTTCGATCTACTTCATACCAATATATGAAGACAAGAT-CGTTATCTTC
* * * *
51764230 GATCTACTTCACGCCAATACATGAAGACAAGACCTTCTACCTTTGATCTACTTTATGCCGATACA
62 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTACCTTTGATCTACTTCACGCCGATACA
51764295 TGA
127 TGA
* * * * * *
51764298 AGAAAAGATCTTCTACCTTTGATCTACTTCATATCGATATATGAAGACAAGATTCGTTTTCTTCG
1 AGACAAGATCTT-T-TCTTCGATCTACTTCATACCAATATATGAAGACAAGA-TCGTTATCTTCG
*
51764363 ATTTACTTCACGCCAATACATGAAGACAAGATCTGCTACCTTTGATCTACTTCACGCCGATACAT
63 ATCTACTTCACGCCAATACATGAAGACAAGATCTGCTACCTTTGATCTACTTCACGCCGATACAT
51764428 GA
128 GA
* * ** *
51764430 AGACAAGATCAGTTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTATCTTC
1 AGACAAGATC--TTTTCTTCGATCTACTTCA-TACCAATATATGAAGACAAGATC-GTTATCTTC
* * * * * * * * * ** * *
51764495 AATCCACTTCGCTACCAATATAGGAAGATAGGATTTGCTTTCTTCGATCTACTTCACGCCAATAC
62 GATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTACCTTTGATCTACTTCACGCCGATAC
51764560 ATGA
126 ATGA
* * **
51764564 AGACAAGATTTGCTTTCTTTGATCTACTTCACTACCAATATGGGAAGAC-A-A--G--ATCTTCG
1 AGACAAGATCT--TTTCTTCGATCTACTTCA-TACCAATATATGAAGACAAGATCGTTATCTTCG
* * * * * * * * *
51764623 ATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACACCAATACA
63 ATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTACCTTTGATCTACTTCACGCCGATACA
51764687 TGA
127 TGA
** * ** *
51764690 AGACAAGATCTATTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATC-TGTACCTTC
1 AGACAAGATC--TTTTCTTCGATCTACTTC-ATACCAATATATGAAGACAAGATCGT-TATCTTC
* * * * * * * * * *
51764754 GATCCACTTC-CTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCATGCCAATAC
62 GATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTACCTTTGATCTACTTCACGCCGATAC
51764818 ATGA
126 ATGA
*
51764822 AGATAAGATCT
1 AGACAAGATCT
51764833 GCTATTTTTA
Statistics
Matches: 576, Mismatches: 69, Indels: 45
0.83 0.10 0.07
Matches are distributed among these distances:
126 94 0.16
127 16 0.03
128 2 0.00
129 1 0.00
130 1 0.00
131 13 0.02
132 322 0.56
133 37 0.06
134 90 0.16
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (129 bp):
AGACAAGATCTTTTCTTCGATCTACTTCATACCAATATATGAAGACAAGATCGTTATCTTCGATC
TACTTCACGCCAATACATGAAGACAAGATCTGCTACCTTTGATCTACTTCACGCCGATACATGA
Found at i:51764672 original size:82 final size:84
Alignment explanation
Indices: 51764356--51764837 Score: 343
Period size: 89 Copynumber: 5.5 Consensus size: 84
51764346 AAGATTCGTT
* * * * * * *
51764356 TTCTTCGATTTACTTCACGCCAATACATGAAGACAAGATCTGCTACCTTTGATCTACTTCAC-GC
1 TTCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTAC
* * *
51764420 CGATACATGAAGACAAGATCA
66 CAATATAGGAAGACAAG-T-A
* * * * *
51764441 GTTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTATCTTCAATCCACTTCG
1 ---TTCTTCGATCTACTTCA-CACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCA
*
51764506 CTACCAATATAGGAAGATAGGATTTGCT-
62 CTACCAATATAGGAAGACA--A---G-TA
* * * * * *
51764534 TTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATTTGCTTTCTTTGATCTACTTCACTAC
1 TTCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTAC
*
51764599 CAATATGGGAAGACAAG-A
66 CAATATAGGAAGACAAGTA
* *
51764617 -TCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCAC-A
1 TTCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTA
* *
51764679 CCAATACATGAAGACAAGATCTA
65 CCAATATAGGAAGACAAG---TA
* * * * *
51764702 TTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTG-TACCTTCGATCCACTTC-C
1 --TTCTTCGATCTACTTC-ACACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC
51764765 TACCAATATAGGAAGACAGGACCTGCTA
63 TACCAATATAGGAAGACA--A---G-TA
** * * *
51764793 -TCTTCGATCTACTTCATGCCAATACATGAAGATAAGATCTGCTAT
1 TTCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTAT
51764838 TTTTAACCTA
Statistics
Matches: 311, Mismatches: 58, Indels: 50
0.74 0.14 0.12
Matches are distributed among these distances:
81 17 0.05
82 51 0.16
84 1 0.00
85 1 0.00
87 20 0.06
88 77 0.25
89 106 0.34
90 31 0.10
91 3 0.01
92 1 0.00
93 1 0.00
95 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (84 bp):
TTCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACTAC
CAATATAGGAAGACAAGTA
Found at i:51764692 original size:126 final size:126
Alignment explanation
Indices: 51764375--51764835 Score: 589
Period size: 126 Copynumber: 3.5 Consensus size: 126
51764365 TTACTTCACG
* * * * * *
51764375 CCAATACATGAAGACAAGATCTGCTACCTTTGATCTACTTCACGCCGATACATGAAGACAAGATC
1 CCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
* * *
51764440 AGTTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTATCTTCAATCCACTTC
66 TGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGAC-A-A---G--ATCTTCGATCCACTTC
51764505 GCTA
124 -CTA
* * * *
51764509 CCAATATAGGAAGATAGGATTTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATT
1 CCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
* * *
51764574 TGCTTTCTTTGATCTACTTCACTACCAATATGGGAAGACAAGATCTTCGATCCACTTCCTA
66 TGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTTCGATCCACTTCCTA
*
51764635 CCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATC
1 CCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
** *
51764700 TATTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTACCTTCGATCCACTTCC
66 TGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGA----T--CTTCGATCCACTTCC
51764765 TA
125 TA
* * *
51764767 CCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCATGCCAATACATGAAGATAAGATC
1 CCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
51764832 TGCT
66 TGCT
51764836 ATTTTTAACC
Statistics
Matches: 288, Mismatches: 33, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
126 100 0.35
127 15 0.05
129 1 0.00
130 1 0.00
132 81 0.28
133 1 0.00
134 89 0.31
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (126 bp):
CCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
TGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTTCGATCCACTTCCTA
Found at i:51773870 original size:18 final size:18
Alignment explanation
Indices: 51773849--51773883 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
51773839 TTTCTCTTTT
51773849 TCAATTT-TTTTCTCAATC
1 TCAATTTCTTTT-TCAATC
51773867 TCAATTTCTTTTTCAAT
1 TCAATTTCTTTTTCAAT
51773884 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (18 bp):
TCAATTTCTTTTTCAATC
Found at i:51774003 original size:36 final size:36
Alignment explanation
Indices: 51773963--51774031 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
51773953 TTCGCTTTTG
* * *
51773963 TTTTCTTGTTGTTTTCTTTCAATTTCTTTTTCCACT
1 TTTTCTTGTTCTTCTCTTTCAATTTCTTGTTCCACT
*
51773999 TTTTCTTTTTCTTCTCTTTCAATTTCTTGTTCC
1 TTTTCTTGTTCTTCTCTTTCAATTTCTTGTTCC
51774032 TTTTCTTTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.07, C:0.22, G:0.04, T:0.67
Consensus pattern (36 bp):
TTTTCTTGTTCTTCTCTTTCAATTTCTTGTTCCACT
Found at i:51774041 original size:22 final size:21
Alignment explanation
Indices: 51774000--51774041 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
51773990 TTTTCCACTT
*
51774000 TTTCTTTTTCTTCTCTTTCAA
1 TTTCTTTTCCTTCTCTTTCAA
*
51774021 TTTCTTGTTCCTTTTCTTTCA
1 TTTCTT-TTCCTTCTCTTTCA
51774042 TCTTTCTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.07, C:0.24, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTCTTTTCCTTCTCTTTCAA
Found at i:51778577 original size:3 final size:3
Alignment explanation
Indices: 51778569--51778617 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
51778559 AAATGAGCAA
51778569 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
51778617 A
1 A
51778618 TGAAAACATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:51780277 original size:15 final size:15
Alignment explanation
Indices: 51780257--51780287 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
51780247 AGGGTTTCTG
51780257 ACTGTAATTTGGGCC
1 ACTGTAATTTGGGCC
*
51780272 ACTGTAGTTTGGGCC
1 ACTGTAATTTGGGCC
51780287 A
1 A
51780288 TTGTTATTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.32
Consensus pattern (15 bp):
ACTGTAATTTGGGCC
Found at i:51782670 original size:25 final size:24
Alignment explanation
Indices: 51782636--51782699 Score: 69
Period size: 25 Copynumber: 2.7 Consensus size: 24
51782626 TTATTACTGT
*
51782636 TATTT-TATTATATATTACTATTA
1 TATTTATATTATATATTACTATCA
* * *
51782659 TTTTTAGTATTATAGATTGCTATCA
1 TATTTA-TATTATATATTACTATCA
51782684 TATTTAT-TTATATATT
1 TATTTATATTATATATT
51782700 CATTTATTCT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
23 12 0.36
24 1 0.03
25 20 0.61
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (24 bp):
TATTTATATTATATATTACTATCA
Found at i:51782804 original size:27 final size:27
Alignment explanation
Indices: 51782737--51782804 Score: 68
Period size: 25 Copynumber: 2.6 Consensus size: 27
51782727 ATTTTACTAC
51782737 ATATTATTTTAAAATTACTTTTATATA
1 ATATTATTTTAAAATTACTTTTATATA
* * ** *
51782764 GTTTTA-TTCCAAATT-GTTTTATATA
1 ATATTATTTTAAAATTACTTTTATATA
51782789 ATAATTATTTTAAAAT
1 AT-ATTATTTTAAAAT
51782805 CATCCTATAC
Statistics
Matches: 30, Mismatches: 9, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
25 10 0.33
26 10 0.33
27 10 0.33
ACGTcount: A:0.38, C:0.04, G:0.03, T:0.54
Consensus pattern (27 bp):
ATATTATTTTAAAATTACTTTTATATA
Found at i:51782876 original size:4 final size:4
Alignment explanation
Indices: 51782867--51782895 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
51782857 TTTCATATAA
51782867 TATT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT T
51782896 TTACCTATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:51790459 original size:5 final size:5
Alignment explanation
Indices: 51790449--51790474 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
51790439 TTGAGATTTA
51790449 TTATT TTATT TTATT TTATT TTATT T
1 TTATT TTATT TTATT TTATT TTATT T
51790475 AAACTTTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:51792442 original size:20 final size:19
Alignment explanation
Indices: 51792419--51792463 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
51792409 AATAAATACC
*
51792419 AAAAATTTATTTTAAAAATT
1 AAAAATGTATTTT-AAAATT
* *
51792439 AAAAAAGTGTTTTAAAATT
1 AAAAATGTATTTTAAAATT
51792458 AAAAAT
1 AAAAAT
51792464 AATAAAAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (19 bp):
AAAAATGTATTTTAAAATT
Found at i:51792481 original size:29 final size:26
Alignment explanation
Indices: 51792430--51792484 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 26
51792420 AAAATTTATT
51792430 TTAAAAATTAAAAAAGTGTTTTAAAA
1 TTAAAAATTAAAAAAGTGTTTTAAAA
*
51792456 TTAAAAATAATAAAAAATGTATTTTAAAA
1 TTAAAAAT--TAAAAAA-GTGTTTTAAAA
51792485 ATATTTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 8 0.32
28 7 0.28
29 10 0.40
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (26 bp):
TTAAAAATTAAAAAAGTGTTTTAAAA
Found at i:51792501 original size:17 final size:17
Alignment explanation
Indices: 51792479--51792525 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
51792469 AAAATGTATT
*
51792479 TTAAAAATATTTTAAAA
1 TTAAAAATATTTAAAAA
*
51792496 TTAAAAAAATTTAAAAA
1 TTAAAAATATTTAAAAA
* *
51792513 ATAAATATATTTA
1 TTAAAAATATTTA
51792526 TTATATTGGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTAAAAATATTTAAAAA
Found at i:51804680 original size:23 final size:24
Alignment explanation
Indices: 51804654--51804723 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 24
51804644 TAATTCAAAA
51804654 AATATATA-ATATTTAAATAATTT
1 AATATATATATATTTAAATAATTT
* *
51804677 AATATA-ATATATATAAATTAATCT
1 AATATATATATATTTAAA-TAATTT
* * *
51804701 AATTTTTATATACTTAAATAATT
1 AATATATATATATTTAAATAATT
51804724 GATTAAGAGT
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
22 1 0.03
23 14 0.38
24 13 0.35
25 9 0.24
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (24 bp):
AATATATATATATTTAAATAATTT
Found at i:51811975 original size:7 final size:7
Alignment explanation
Indices: 51811963--51811997 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
51811953 TTTCTTTATT
51811963 TATTAAA
1 TATTAAA
51811970 TATTAAA
1 TATTAAA
51811977 TATTAAA
1 TATTAAA
51811984 TATTAAA
1 TATTAAA
51811991 TATTAAA
1 TATTAAA
51811998 AAAAAGTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
TATTAAA
Found at i:51823859 original size:2 final size:2
Alignment explanation
Indices: 51823852--51823885 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
51823842 TTTTGTCATT
51823852 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
51823886 ACATCACGTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:51841850 original size:35 final size:35
Alignment explanation
Indices: 51841804--51841875 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
51841794 TAACTTGCTA
51841804 AATTTGAGAAAGTGACTAACCATTAATTATAATTT
1 AATTTGAGAAAGTGACTAACCATTAATTATAATTT
51841839 AATTTGAGAAAGTGACTAACCATTAATTATAATTT
1 AATTTGAGAAAGTGACTAACCATTAATTATAATTT
51841874 AA
1 AA
51841876 CTTTTTCTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.36
Consensus pattern (35 bp):
AATTTGAGAAAGTGACTAACCATTAATTATAATTT
Found at i:51842952 original size:4 final size:4
Alignment explanation
Indices: 51842943--51843129 Score: 356
Period size: 4 Copynumber: 46.8 Consensus size: 4
51842933 ATATATGTGA
51842943 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
51842991 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
* *
51843039 ATGT ATGT ATGT ATGT ATGT ATGC ATGT ATGC ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
51843087 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATG
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATG
51843130 CTGCCCTTAC
Statistics
Matches: 179, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
4 179 1.00
ACGTcount: A:0.25, C:0.01, G:0.25, T:0.49
Consensus pattern (4 bp):
ATGT
Found at i:51844903 original size:25 final size:23
Alignment explanation
Indices: 51844857--51844905 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 23
51844847 AAAAATAAAC
* *
51844857 AAAAAAATTCAAATGGTTATATT
1 AAAAAAATACAAATGGTAATATT
51844880 AAAAAAATACAAATGACGTAATATT
1 AAAAAAATACAAATG--GTAATATT
51844905 A
1 A
51844906 CTATTTCATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 14 0.64
25 8 0.36
ACGTcount: A:0.57, C:0.06, G:0.08, T:0.29
Consensus pattern (23 bp):
AAAAAAATACAAATGGTAATATT
Found at i:51845793 original size:7 final size:7
Alignment explanation
Indices: 51845781--51845807 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
51845771 CAGACAAGTA
51845781 TCGTCAC
1 TCGTCAC
51845788 TCGTCAC
1 TCGTCAC
51845795 TCGTCAC
1 TCGTCAC
51845802 TCGTCA
1 TCGTCA
51845808 TTACCATTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.41, G:0.15, T:0.30
Consensus pattern (7 bp):
TCGTCAC
Found at i:51848273 original size:16 final size:16
Alignment explanation
Indices: 51848252--51848285 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
51848242 TTTTAACTTT
*
51848252 AATTTTTCGTTTAACC
1 AATTTTCCGTTTAACC
51848268 AATTTTCCGTTTAACC
1 AATTTTCCGTTTAACC
51848284 AA
1 AA
51848286 ATAGAATAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.21, G:0.06, T:0.44
Consensus pattern (16 bp):
AATTTTCCGTTTAACC
Found at i:51864603 original size:45 final size:45
Alignment explanation
Indices: 51864552--51864670 Score: 136
Period size: 45 Copynumber: 2.6 Consensus size: 45
51864542 TCGCATCTAG
*
51864552 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACT-AAGCAAAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-AAAGCAAA
* **
51864597 TCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGGCTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGAAAGCAAA
**
51864642 TCTTATCTCCCTGAAGTTGTGGTGGAGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCA
51864671 AATTAAAGCC
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
44 3 0.05
45 54 0.86
46 6 0.10
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAA
Found at i:51864888 original size:44 final size:44
Alignment explanation
Indices: 51864750--51865085 Score: 190
Period size: 44 Copynumber: 7.7 Consensus size: 44
51864740 GCATCTAGTT
* * *
51864750 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAGCA-AG-TC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGA-TTA--AAACCACAGATC
* * * * *
51864795 TTATC-CTCTTGAAGTTGCGGTGGAGCAGATTAAAGCCGATA-ATC
1 TTATCTC-CCTGAAGTTGCAGTGGAGTAGATTAAAACC-ACAGATC
* * * * *
51864839 CTATCTCCCTGAAGTTACAATGGAGTGGATTAAAACCTCAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAACCACAGATC
* * * * *** * *
51864883 TTATCTCTCTAAAGATGCAG-AGAGTAGA-TCGTATC-TAG-TC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAACCACAGATC
* * *
51864923 TTATCTCCCTGAAGTTACAGTGGAGTAGACTAAGCAA--AGCAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATTAA--AACCA-CAGATC
* * ** *
51864968 TTATCTCCCTGAAGTTGCTGCGGAACAGATTAAAGCCGACA-ATC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAACC-ACAGATC
* * * *
51865012 CTATCTCCCTGAAGTTGCAGTGGAGTGGATTATAACCACATATC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAACCACAGATC
* *
51865056 TTATCTCTCTGAAGTTGCAGTAGAGTAGAT
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGAT
51865086 CACATTGGGT
Statistics
Matches: 217, Mismatches: 57, Indels: 35
0.70 0.18 0.11
Matches are distributed among these distances:
40 18 0.08
41 9 0.04
42 7 0.03
43 12 0.06
44 113 0.52
45 57 0.26
46 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAACCACAGATC
Found at i:51865037 original size:89 final size:88
Alignment explanation
Indices: 51864751--51865037 Score: 262
Period size: 89 Copynumber: 3.3 Consensus size: 88
51864741 CATCTAGTTT
* * * * *
51864751 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAGCAAGTCTTATC-CTCTTGAAGTTGCGG
1 TATCTCCCTGAAGTTACAGTGGAGTAGACTAAGCAAAGCAAATCTTATCTC-CCTGAAGTTGCAG
51864815 TGGAGCAGATTAAAGCCGATAATCC
65 -GGAGCAGATTAAAGCCGATAATCC
* * * ** * * * *
51864840 TATCTCCCTGAAGTTACAATGGAGTGGATTAA--AACCTCAGATCTTATCTCTCTAAAGATGCAG
1 TATCTCCCTGAAGTTACAGTGGAGTAGACTAAGCAA-AGCAAATCTTATCTCCCTGAAGTTGCAG
* * *** * * *
51864903 AGAGTAGATCGTA-TC--TAGTCT
65 GGAGCAGATTAAAGCCGATAATCC
*
51864924 TATCTCCCTGAAGTTACAGTGGAGTAGACTAAGCAAAGCAAATCTTATCTCCCTGAAGTTGCTGC
1 TATCTCCCTGAAGTTACAGTGGAGTAGACTAAGCAAAGCAAATCTTATCTCCCTGAAGTTGCAG-
* *
51864989 GGAACAGATTAAAGCCGACAATCC
65 GGAGCAGATTAAAGCCGATAATCC
*
51865013 TATCTCCCTGAAGTTGCAGTGGAGT
1 TATCTCCCTGAAGTTACAGTGGAGT
51865038 GGATTATAAC
Statistics
Matches: 147, Mismatches: 43, Indels: 16
0.71 0.21 0.08
Matches are distributed among these distances:
84 33 0.22
85 21 0.14
86 10 0.07
87 11 0.07
88 17 0.12
89 55 0.37
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (88 bp):
TATCTCCCTGAAGTTACAGTGGAGTAGACTAAGCAAAGCAAATCTTATCTCCCTGAAGTTGCAGG
GAGCAGATTAAAGCCGATAATCC
Found at i:51865206 original size:175 final size:172
Alignment explanation
Indices: 51864683--51865216 Score: 700
Period size: 173 Copynumber: 3.1 Consensus size: 172
51864673 TTAAAGCCGA
51864683 CAGTGGAGTGGATTAAATCCTCAGATCTTATCTCTCTGAAGATGCAGAGAGTAGATCGCATCTAG
1 CAGTGGAGTGGATTAAA-CCTCAGATCTTATCTCTCTGAAGATGCAGAGAGTAGATCGCATCTAG
* * *
51864748 TTTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAGCAAGTCTTATCCTCTTGAAGTTGC
65 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGCAAAGCAAGTCTTATCCCCTTGAAGTTGC
* * *
51864813 GGT-GGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTA
130 TGTGGGA-CAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTG
* * *
51864856 CAATGGAGTGGATTAAAACCTCAGATCTTATCTCTCTAAAGATGCAGAGAGTAGATCGTATCTAG
1 CAGTGGAGTGGATT-AAACCTCAGATCTTATCTCTCTGAAGATGCAGAGAGTAGATCGCATCTAG
* *
51864921 TCTTATCTCCCTGAAGTTACAGTGGAGTAGACTAAGCAAAGCAAATCTTATCTCCC-TGAAGTTG
65 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGCAAAGCAAGTCTTATC-CCCTTGAAGTTG
* *
51864985 CTGCGGAACAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTG
129 CTGTGGGACAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTG
* * * *
51865029 CAGTGGAGTGGATTATAACCACATATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCACAT-TG
1 CAGTGGAGTGGATTA-AACCTCAGATCTTATCTCTCTGAAGATGCAG-AGAGTAGATCGCATCT-
* * * * *
51865093 GGTCTTAATCTCCTTGAAGTTGCAGTGGAGTAGAATCAAG-AAATCAAGTCTTATCCCCTTGAAA
63 AGTCTT-ATCTCCCTGAAGTTGCAGTGGAGTAGACT-AAGCAAAGCAAGTCTTATCCCCTTGAAG
* ** * *
51865157 TTGCTGTGGGACAGACTAAA-CATACCAATCCTATCTCCCCGACGTTG
126 TTGCTGTGGGACAGATTAAAGCCGA-CAATCCTATCTCCCTGAAGTTG
51865204 CAGTGGAGTGGAT
1 CAGTGGAGTGGAT
51865217 CGAGACACCA
Statistics
Matches: 317, Mismatches: 34, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
172 1 0.00
173 191 0.60
174 29 0.09
175 93 0.29
176 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (172 bp):
CAGTGGAGTGGATTAAACCTCAGATCTTATCTCTCTGAAGATGCAGAGAGTAGATCGCATCTAGT
CTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGCAAAGCAAGTCTTATCCCCTTGAAGTTGCT
GTGGGACAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTG
Found at i:51867356 original size:98 final size:98
Alignment explanation
Indices: 51867242--51867438 Score: 331
Period size: 98 Copynumber: 2.0 Consensus size: 98
51867232 TTAAAAATTA
* * *
51867242 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGCGTGTGATTTC
*
51867307 TTAAATATTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATATTGGATAAGTGGATATTCTTTTAAAG
* *
51867340 TAAAGGAAATATTCCGAGTTTGGGATTCTAGAGGTATCGTGCCCTAACGTATTGCGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGCGTGTGATTTC
*
51867405 TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
66 TTAAATATTGGATAAGTGGATATTCTTTTAAAG
51867438 T
1 T
51867439 TTTATTGTAC
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGCGTGTGATTTC
TTAAATATTGGATAAGTGGATATTCTTTTAAAG
Found at i:51869575 original size:6 final size:6
Alignment explanation
Indices: 51869564--51869589 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
51869554 AAAATTTTTC
51869564 AAAATA AAAATA AAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AA
51869590 GCCACTGCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:51869906 original size:20 final size:22
Alignment explanation
Indices: 51869881--51869922 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
51869871 AAAAGTTATA
*
51869881 AAAAATATTAA-TT-TTTAAAT
1 AAAAATATAAAGTTATTTAAAT
51869901 AAAAATATAAAGTTATTTAAAT
1 AAAAATATAAAGTTATTTAAAT
51869923 TTTATTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 2 0.11
22 7 0.37
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
AAAAATATAAAGTTATTTAAAT
Found at i:51870272 original size:18 final size:19
Alignment explanation
Indices: 51870236--51870272 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
51870226 GTTGAAGTAC
51870236 TTTTTTGATTCATTTTATA
1 TTTTTTGATTCATTTTATA
51870255 TTTTTT-ATT-ATTTCTATA
1 TTTTTTGATTCATTT-TATA
51870273 AAATTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.24
18 7 0.41
19 6 0.35
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.70
Consensus pattern (19 bp):
TTTTTTGATTCATTTTATA
Found at i:51870764 original size:19 final size:19
Alignment explanation
Indices: 51870732--51870773 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
51870722 AAAAATGGCA
51870732 GAAAGCAATAGAG-AGAGAT
1 GAAAGCAATAGAGAAGA-AT
* *
51870751 GAAAGCTATCGAGAAGAAT
1 GAAAGCAATAGAGAAGAAT
51870770 GAAA
1 GAAA
51870774 CTTGAGAGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.52, C:0.07, G:0.29, T:0.12
Consensus pattern (19 bp):
GAAAGCAATAGAGAAGAAT
Found at i:51871769 original size:22 final size:22
Alignment explanation
Indices: 51871707--51871775 Score: 111
Period size: 22 Copynumber: 3.1 Consensus size: 22
51871697 ATTGTTCAAA
* **
51871707 CATGAGAGCTTAGTACGTGAAA
1 CATGAGAGCTTAGTACGTTAGC
51871729 CATGAGAGCTTAGTACGTTAGC
1 CATGAGAGCTTAGTACGTTAGC
51871751 CATGAGAGCTTAGTACGTTAGC
1 CATGAGAGCTTAGTACGTTAGC
51871773 CAT
1 CAT
51871776 ATCATAAAGG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (22 bp):
CATGAGAGCTTAGTACGTTAGC
Found at i:51875922 original size:9 final size:9
Alignment explanation
Indices: 51875843--51876031 Score: 98
Period size: 9 Copynumber: 20.1 Consensus size: 9
51875833 TATTTTTCTC
*
51875843 ATAAAATTT
1 ATAAAAATT
51875852 ATAATAAA-T
1 ATAA-AAATT
51875861 -TAAAAA-T
1 ATAAAAATT
*
51875868 ATTAAAATT
1 ATAAAAATT
*
51875877 GATAAAAAAT
1 -ATAAAAATT
**
51875887 ATAAAAAAC
1 ATAAAAATT
**
51875896 ATAAAAGCGT
1 ATAAAA-ATT
51875906 ATAAAAATT
1 ATAAAAATT
51875915 ATAAAAATT
1 ATAAAAATT
*
51875924 CTAATAAATT
1 ATAA-AAATT
51875934 AT-AAAATT
1 ATAAAAATT
*
51875942 TTATAAAATT
1 ATA-AAAATT
51875952 AATAAAACATAT
1 -ATAAAA-AT-T
* *
51875964 TTAAAATTTT
1 ATAAAA-ATT
* *
51875974 ATAATGACTT
1 ATAA-AAATT
*
51875984 ATAAAAAAT
1 ATAAAAATT
51875993 ATAAAAATTT
1 ATAAAAA-TT
*
51876003 CTAACAAATT
1 ATAA-AAATT
*
51876013 ATAACAATT
1 ATAAAAATT
51876022 ATAAAAATT
1 ATAAAAATT
51876031 A
1 A
51876032 AAATTTATAT
Statistics
Matches: 138, Mismatches: 28, Indels: 28
0.71 0.14 0.14
Matches are distributed among these distances:
7 4 0.03
8 14 0.10
9 56 0.41
10 49 0.36
11 14 0.10
12 1 0.01
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (9 bp):
ATAAAAATT
Found at i:51876000 original size:30 final size:30
Alignment explanation
Indices: 51875931--51876002 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 30
51875921 ATTCTAATAA
*
51875931 ATTATAAAATTTTATAAAATTAATAAAACAT
1 ATTA-AAAATTTTATAAAATTAATAAAAAAT
* *
51875962 ATTTAAAATTTTATAATGACTT-ATAAAAAAT
1 ATTAAAAATTTTATAA--AATTAATAAAAAAT
51875993 A-TAAAAATTT
1 ATTAAAAATTT
51876003 CTAACAAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
30 20 0.57
31 12 0.34
32 3 0.09
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (30 bp):
ATTAAAAATTTTATAAAATTAATAAAAAAT
Found at i:51876874 original size:8 final size:9
Alignment explanation
Indices: 51876796--51876972 Score: 113
Period size: 10 Copynumber: 18.1 Consensus size: 9
51876786 ATTGTGATTA
51876796 TTTATAATT
1 TTTATAATT
*
51876805 TATTAGAATTT
1 T-TTATAA-TT
51876816 TTTATAAGTT
1 TTTATAA-TT
**
51876826 TTTATAAAA
1 TTTATAATT
51876835 TTTATAAGTT
1 TTTATAA-TT
*
51876845 TTTCTGAATT
1 TTTAT-AATT
51876855 TTTATAATT
1 TTTATAATT
51876864 TTTATAATTT
1 TTTATAA-TT
* *
51876874 TTTAGAAAGT
1 TTTA-TAATT
51876884 TTTA-AATAT
1 TTTATAAT-T
*
51876893 TTTAAATATGT
1 TTTATA-AT-T
*
51876904 TTTATATTAT
1 TTTATAAT-T
51876914 TTTATAATAT
1 TTTATAAT-T
* *
51876924 ATTAGAATT
1 TTTATAATT
*
51876933 TTTATAATA
1 TTTATAATT
51876942 TTTATAAGTT
1 TTTATAA-TT
51876952 TTTATGAATTT
1 TTTAT-AA-TT
51876963 TTTATAATT
1 TTTATAATT
51876972 T
1 T
51876973 ATAAGTTTAT
Statistics
Matches: 133, Mismatches: 24, Indels: 22
0.74 0.13 0.12
Matches are distributed among these distances:
8 2 0.02
9 41 0.31
10 66 0.50
11 24 0.18
ACGTcount: A:0.35, C:0.01, G:0.06, T:0.59
Consensus pattern (9 bp):
TTTATAATT
Found at i:51876875 original size:19 final size:19
Alignment explanation
Indices: 51876796--51876972 Score: 112
Period size: 19 Copynumber: 9.0 Consensus size: 19
51876786 ATTGTGATTA
*
51876796 TTTATAATTTATTAGAATTT
1 TTTATAATTT-TTATAATTT
**
51876816 TTTATAAGTTTTTATAA-AA
1 TTTATAA-TTTTTATAATTT
*
51876835 TTTATAAGTTTTTCTGAA-TT
1 TTTATAA-TTTTTAT-AATTT
51876855 TTTATAATTTTTATAATTT
1 TTTATAATTTTTATAATTT
* * *
51876874 TTTAGAAAGTTTTA-AATAT
1 TTTA-TAATTTTTATAATTT
*
51876893 TTTAAATATGTTTTAT-ATTAT
1 TTTATA-AT-TTTTATAATT-T
* *
51876914 TTTATAATATATTAGAA-TT
1 TTTATAAT-TTTTATAATTT
* *
51876933 TTTATAATATTTATAAGTT
1 TTTATAATTTTTATAATTT
51876952 TTTATGAATTTTTTATAATTT
1 TTTAT-AA-TTTTTATAATTT
51876973 ATAAGTTTAT
Statistics
Matches: 124, Mismatches: 21, Indels: 23
0.74 0.12 0.14
Matches are distributed among these distances:
18 9 0.07
19 51 0.41
20 44 0.35
21 20 0.16
ACGTcount: A:0.35, C:0.01, G:0.06, T:0.59
Consensus pattern (19 bp):
TTTATAATTTTTATAATTT
Found at i:51876886 original size:29 final size:28
Alignment explanation
Indices: 51876796--51876966 Score: 93
Period size: 29 Copynumber: 5.8 Consensus size: 28
51876786 ATTGTGATTA
* *
51876796 TTTATAATTTATTAGAATTTTTTATAAGTT
1 TTTATAATTT-TTATAATTTTTTAGAAG-T
** *
51876826 TTTATAAAATTTATAAGTTTTTCT-GAATT
1 TTTATAATTTTTATAA-TTTTT-TAGAAGT
51876855 TTTATAATTTTTATAATTTTTTAGAAAGT
1 TTTATAATTTTTATAATTTTTTAG-AAGT
*
51876884 TTTA-AATATTTTA-AATATGTTTTATATTA-T
1 TTTATAAT-TTTTATAAT-T-TTTTAGA--AGT
* * *
51876914 TTTATAATATATTAGAA-TTTTTATAA-T
1 TTTATAAT-TTTTATAATTTTTTAGAAGT
51876941 ATTTATAAGTTTTTATGAATTTTTTA
1 -TTTATAA-TTTTTAT-AATTTTTTA
51876967 TAATTTATAA
Statistics
Matches: 114, Mismatches: 12, Indels: 30
0.73 0.08 0.19
Matches are distributed among these distances:
27 3 0.03
28 23 0.20
29 44 0.39
30 32 0.28
31 10 0.09
32 2 0.02
ACGTcount: A:0.35, C:0.01, G:0.06, T:0.58
Consensus pattern (28 bp):
TTTATAATTTTTATAATTTTTTAGAAGT
Found at i:51876992 original size:28 final size:30
Alignment explanation
Indices: 51876903--51876992 Score: 89
Period size: 28 Copynumber: 3.1 Consensus size: 30
51876893 TTTAAATATG
* * *
51876903 TTTTATATTATTTTATAA-TATAT-TAGAAT
1 TTTTATAATA-TTTATAAGTTTATATAAAAT
* * *
51876932 TTTTATAATATTTATAAGTTTTTATGAATT
1 TTTTATAATATTTATAAGTTTATATAAAAT
51876962 TTTTAT-A-ATTTATAAGTTTATATAAAAT
1 TTTTATAATATTTATAAGTTTATATAAAAT
51876990 TTT
1 TTT
51876993 GATATTTGAT
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
28 28 0.56
29 13 0.26
30 9 0.18
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (30 bp):
TTTTATAATATTTATAAGTTTATATAAAAT
Found at i:51877053 original size:20 final size:20
Alignment explanation
Indices: 51876796--51877056 Score: 95
Period size: 20 Copynumber: 13.2 Consensus size: 20
51876786 ATTGTGATTA
*
51876796 TTTATAATTTATTAGAAT-TT
1 TTTATAATTT-TTATAATATT
*
51876816 TTTATAAGTTTTTATAA-A-A
1 TTTATAA-TTTTTATAATATT
* *
51876835 TTTATAAGTTTTTCTGA-ATT
1 TTTATAA-TTTTTATAATATT
51876855 TTTATAATTTTTATAAT-TT
1 TTTATAATTTTTATAATATT
* *
51876874 TTTAGAAAGTTTTA-AATA-T
1 TTTA-TAATTTTTATAATATT
* *
51876893 TTTAAATATGTTTTATATTA-T
1 TTTATA-AT-TTTTATAATATT
* *
51876914 TTTATAATATATTA-GA-ATT
1 TTTATAAT-TTTTATAATATT
* *
51876933 TTTATAATATTTATAA-GTT
1 TTTATAATTTTTATAATATT
*
51876952 TTTATGAATTTTT-T-ATA-A
1 TTTAT-AATTTTTATAATATT
* *
51876970 TTTATAAGTTTATATAAAATT
1 TTTATAA-TTTTTATAATATT
* * *
51876991 TTGAT-A-TTTGATATTTGATAT
1 TTTATAATTTTTATA-AT-AT-T
* * ** *
51877012 TTTATTATTTTCATGTTTTT
1 TTTATAATTTTTATAATATT
51877032 TTTATAATTTTTATAATATT
1 TTTATAATTTTTATAATATT
51877052 TTTAT
1 TTTAT
51877057 GTTCTTTTCA
Statistics
Matches: 179, Mismatches: 40, Indels: 44
0.68 0.15 0.17
Matches are distributed among these distances:
17 2 0.01
18 21 0.12
19 57 0.32
20 69 0.39
21 22 0.12
22 3 0.02
23 5 0.03
ACGTcount: A:0.34, C:0.01, G:0.06, T:0.60
Consensus pattern (20 bp):
TTTATAATTTTTATAATATT
Found at i:51877053 original size:31 final size:31
Alignment explanation
Indices: 51877017--51877076 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
51877007 GATATTTTAT
* *
51877017 TATTTTCATGTTTTTTTTATAATTTTTATAA
1 TATTTTCATGTTCTTTTCATAATTTTTATAA
* *
51877048 TATTTTTATGTTCTTTTCATACTTTTTAT
1 TATTTTCATGTTCTTTTCATAATTTTTAT
51877077 GGATTGGTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.22, C:0.07, G:0.03, T:0.68
Consensus pattern (31 bp):
TATTTTCATGTTCTTTTCATAATTTTTATAA
Found at i:51877219 original size:13 final size:12
Alignment explanation
Indices: 51877199--51877235 Score: 56
Period size: 13 Copynumber: 3.0 Consensus size: 12
51877189 CCCATAAAGC
51877199 TAAATAAAAATA
1 TAAATAAAAATA
51877211 TACAATAAAAATA
1 TA-AATAAAAATA
*
51877224 TAAATATAAATA
1 TAAATAAAAATA
51877236 CACTCTTACT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (12 bp):
TAAATAAAAATA
Found at i:51877228 original size:19 final size:18
Alignment explanation
Indices: 51877200--51877235 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
51877190 CCATAAAGCT
51877200 AAATAAAAATATACAATAA
1 AAATAAAAATATA-AATAA
*
51877219 AAATATAAATATAAATA
1 AAATAAAAATATAAATA
51877236 CACTCTTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (18 bp):
AAATAAAAATATAAATAA
Found at i:51877254 original size:2 final size:2
Alignment explanation
Indices: 51877247--51877271 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
51877237 ACTCTTACTA
51877247 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
51877272 AATTTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:51880646 original size:11 final size:11
Alignment explanation
Indices: 51880632--51880656 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
51880622 GTTGAAGGAG
51880632 GATTATAAAAT
1 GATTATAAAAT
51880643 GATTATAAAAT
1 GATTATAAAAT
51880654 GAT
1 GAT
51880657 CCTAACTACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (11 bp):
GATTATAAAAT
Found at i:51881610 original size:19 final size:19
Alignment explanation
Indices: 51881572--51881610 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
51881562 AATTGTGATT
*
51881572 TTTTTAAATAATTTTATAA
1 TTTTTAAATAATTGTATAA
51881591 TTTTTAAATTAATTGT-TAA
1 TTTTTAAA-TAATTGTATAA
51881610 T
1 T
51881611 GTGGCATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (19 bp):
TTTTTAAATAATTGTATAA
Found at i:51887367 original size:40 final size:40
Alignment explanation
Indices: 51887280--51887389 Score: 134
Period size: 40 Copynumber: 2.7 Consensus size: 40
51887270 AGTACGAATT
*
51887280 ATTATACCGGC-CTGAAGCCTGCTAGGGCACTAAGCCCGACA
1 ATTACACCGGCAC-GAAGCCTGCTA-GGCACTAAGCCCGACA
* * *
51887321 ATTACACCGGTACGAAGCCTGCTAGGCATTAAGCCCGATA
1 ATTACACCGGCACGAAGCCTGCTAGGCACTAAGCCCGACA
*
51887361 GA-TACACTGGCACGAAGCCTGCTAGGCAC
1 -ATTACACCGGCACGAAGCCTGCTAGGCAC
51887390 AAGGCTTAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
40 38 0.63
41 21 0.35
42 1 0.02
ACGTcount: A:0.28, C:0.30, G:0.25, T:0.17
Consensus pattern (40 bp):
ATTACACCGGCACGAAGCCTGCTAGGCACTAAGCCCGACA
Found at i:51888126 original size:21 final size:19
Alignment explanation
Indices: 51888079--51888119 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
51888069 ATATTTATGA
51888079 ATTA-AATATTATTATATT
1 ATTATAATATTATTATATT
51888097 ATTATAATA-TATTATTATT
1 ATTATAATATTATTA-TATT
51888116 ATTA
1 ATTA
51888120 ACTAATACGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
ATTATAATATTATTATATT
Found at i:51888165 original size:15 final size:16
Alignment explanation
Indices: 51888145--51888180 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
51888135 AAATAAAGTA
*
51888145 AAAGAATAAAA-AAAC
1 AAAGAAGAAAAGAAAC
51888160 AAAGAAGAAAAGAAAC
1 AAAGAAGAAAAGAAAC
51888176 AAAGA
1 AAAGA
51888181 CCATTCGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.78, C:0.06, G:0.14, T:0.03
Consensus pattern (16 bp):
AAAGAAGAAAAGAAAC
Found at i:51888215 original size:14 final size:15
Alignment explanation
Indices: 51888196--51888232 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
51888186 CGAAACAGGG
51888196 GAAAGAAAAAGA-AA
1 GAAAGAAAAAGAGAA
*
51888210 GAAAGAAAAATAGAA
1 GAAAGAAAAAGAGAA
51888225 GAAA-AAAA
1 GAAAGAAAA
51888233 TTAAGGTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (15 bp):
GAAAGAAAAAGAGAA
Found at i:51888599 original size:17 final size:18
Alignment explanation
Indices: 51888577--51888610 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
51888567 TAAATGAGTT
51888577 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
51888594 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
51888611 AAAAGAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:51888934 original size:36 final size:35
Alignment explanation
Indices: 51888894--51888980 Score: 95
Period size: 37 Copynumber: 2.4 Consensus size: 35
51888884 TATATGTGTG
* *
51888894 GAATTGAAATGAATAT-TGACTTGAAAATGGAAAAGT
1 GAATTGAATTGAAT-TGTGA-TTGAAAATGAAAAAGT
*
51888930 GAATTTTGAATTGAATTGTGATTGAAAGTGAAAAAGT
1 GAA--TTGAATTGAATTGTGATTGAAAATGAAAAAGT
51888967 GAAATTGAATTGAA
1 G-AATTGAATTGAA
51888981 ATTTGAATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
36 13 0.30
37 16 0.36
38 15 0.34
ACGTcount: A:0.45, C:0.01, G:0.23, T:0.31
Consensus pattern (35 bp):
GAATTGAATTGAATTGTGATTGAAAATGAAAAAGT
Found at i:51892480 original size:24 final size:24
Alignment explanation
Indices: 51892450--51892497 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
51892440 GTCAAGCTGT
51892450 ACGTTGTGGTCAAGCCACTCAATA
1 ACGTTGTGGTCAAGCCACTCAATA
* *
51892474 ACATTGTGGCCAAGCCACTCAATA
1 ACGTTGTGGTCAAGCCACTCAATA
51892498 TCACAGGCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (24 bp):
ACGTTGTGGTCAAGCCACTCAATA
Found at i:51892545 original size:64 final size:63
Alignment explanation
Indices: 51892411--51892561 Score: 212
Period size: 64 Copynumber: 2.4 Consensus size: 63
51892401 ATAACACACC
* * * * * *
51892411 ACGTTGTGACCAAGCCACTCAATATCGCAGTCAAGCTGTACGTTGTGGTCAAGCCACTCAATA
1 ACGTTGTGGCCAAGCCACTCAATATCACAGGCAAACTGCACGTTATGGTCAAGCCACTCAATA
* *
51892474 ACATTGTGGCCAAGCCACTCAATATCACAGGCAAACTGCATCGTTATTGTCAAGCCACTCAATA
1 ACGTTGTGGCCAAGCCACTCAATATCACAGGCAAACTGCA-CGTTATGGTCAAGCCACTCAATA
*
51892538 GCGTTGTGGCCAAGCCACTCAATA
1 ACGTTGTGGCCAAGCCACTCAATA
51892562 ACGTTGTGGT
Statistics
Matches: 77, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
63 34 0.44
64 43 0.56
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (63 bp):
ACGTTGTGGCCAAGCCACTCAATATCACAGGCAAACTGCACGTTATGGTCAAGCCACTCAATA
Found at i:51892551 original size:24 final size:24
Alignment explanation
Indices: 51892524--51892582 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
51892514 TCGTTATTGT
*
51892524 CAAGCCACTCAATAGCGTTGTGGC
1 CAAGCCACTCAATAACGTTGTGGC
*
51892548 CAAGCCACTCAATAACGTTGTGGT
1 CAAGCCACTCAATAACGTTGTGGC
51892572 CAAGCCACTCA
1 CAAGCCACTCA
51892583 TTATTGCAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (24 bp):
CAAGCCACTCAATAACGTTGTGGC
Found at i:51892721 original size:42 final size:42
Alignment explanation
Indices: 51892672--51892769 Score: 126
Period size: 42 Copynumber: 2.3 Consensus size: 42
51892662 TATTTTCAGT
* *
51892672 GACATGCTTAACATGTAAAT-TGAATTTATAATCAACATAGTC
1 GACATGCTTAACATGCAAATCAG-ATTTATAATCAACATAGTC
* * * *
51892714 GGCATGCTTAACATGCGAATCAGATTTATAATTAATATAGTC
1 GACATGCTTAACATGCAAATCAGATTTATAATCAACATAGTC
51892756 GACATGCTTAACAT
1 GACATGCTTAACAT
51892770 ACGAATCATA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 47 0.98
43 1 0.02
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (42 bp):
GACATGCTTAACATGCAAATCAGATTTATAATCAACATAGTC
Found at i:51892775 original size:42 final size:42
Alignment explanation
Indices: 51892695--51892777 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
51892685 TGTAAATTGA
* *
51892695 ATTTATAATCAACATAGTCGGCATGCTTAACATGCGAATCAG
1 ATTTATAATCAACATAGTCGACATGCTTAACATACGAATCAG
* *
51892737 ATTTATAATTAATATAGTCGACATGCTTAACATACGAATCA
1 ATTTATAATCAACATAGTCGACATGCTTAACATACGAATCA
51892778 TATCTCAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (42 bp):
ATTTATAATCAACATAGTCGACATGCTTAACATACGAATCAG
Found at i:51895298 original size:16 final size:17
Alignment explanation
Indices: 51895279--51895315 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
51895269 ATAAACATTT
*
51895279 AAAACCTTAA-AAACCA
1 AAAACCCTAACAAACCA
51895295 AAAACCCTAACAAACCA
1 AAAACCCTAACAAACCA
51895312 AAAA
1 AAAA
51895316 ATTGTAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.65, C:0.27, G:0.00, T:0.08
Consensus pattern (17 bp):
AAAACCCTAACAAACCA
Found at i:51896222 original size:17 final size:16
Alignment explanation
Indices: 51896202--51896233 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51896192 TAAAATTTCT
*
51896202 AAAATTAAAAAAAATA
1 AAAAATAAAAAAAATA
51896218 AAAAATAAAAAAAATA
1 AAAAATAAAAAAAATA
51896234 TATTAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (16 bp):
AAAAATAAAAAAAATA
Found at i:51899975 original size:8 final size:7
Alignment explanation
Indices: 51899959--51900014 Score: 53
Period size: 7 Copynumber: 8.0 Consensus size: 7
51899949 CCCTTTTTTT
51899959 ATTTT-A
1 ATTTTAA
51899965 ATTTTAAA
1 ATTTT-AA
51899973 ATTTTTAA
1 A-TTTTAA
* *
51899981 TTTTTAT
1 ATTTTAA
*
51899988 ATTTCAA
1 ATTTTAA
51899995 ATTTTAA
1 ATTTTAA
51900002 ATTTT-A
1 ATTTTAA
51900008 ATTTTAA
1 ATTTTAA
51900015 TTATTAGTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
6 11 0.28
7 21 0.52
8 4 0.10
9 4 0.10
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (7 bp):
ATTTTAA
Found at i:51899985 original size:22 final size:21
Alignment explanation
Indices: 51899959--51900014 Score: 76
Period size: 22 Copynumber: 2.6 Consensus size: 21
51899949 CCCTTTTTTT
*
51899959 ATTTTAATTTTAAAATTTTTA
1 ATTTTAATTTTAAAATTTTAA
* *
51899980 ATTTTTATATTTCAAATTTTAA
1 ATTTTAAT-TTTAAAATTTTAA
51900002 ATTTTAATTTTAA
1 ATTTTAATTTTAA
51900015 TTATTAGTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 11 0.38
22 18 0.62
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
ATTTTAATTTTAAAATTTTAA
Found at i:51900723 original size:24 final size:24
Alignment explanation
Indices: 51900696--51900759 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
51900686 TTTCTAGAAG
* * *
51900696 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTGATTAGCATAATAT
51900720 ATTTAGCATTGATTAGCATAATAT
1 ATTTAGCATTGATTAGCATAATAT
51900744 ATTT-GACATTGATTAG
1 ATTTAG-CATTGATTAG
51900760 AATTAGGTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
23 1 0.03
24 35 0.97
ACGTcount: A:0.36, C:0.05, G:0.12, T:0.47
Consensus pattern (24 bp):
ATTTAGCATTGATTAGCATAATAT
Found at i:51903865 original size:26 final size:26
Alignment explanation
Indices: 51903829--51903881 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
51903819 ACTAGAGTGT
51903829 TTTATAGTCTCAAAAAAGGAGGACTA
1 TTTATAGTCTCAAAAAAGGAGGACTA
51903855 TTTATAGTCTCAAAAAAGGAGGACTA
1 TTTATAGTCTCAAAAAAGGAGGACTA
51903881 T
1 T
51903882 GTTTGTTTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (26 bp):
TTTATAGTCTCAAAAAAGGAGGACTA
Found at i:51905204 original size:24 final size:24
Alignment explanation
Indices: 51905153--51905205 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
51905143 TTTAGTGCTT
* *
51905153 ATTAGTATAATATATTTAGCATTT
1 ATTAGCATAATATATTTAGCATTG
51905177 ATTAGCATAATATATTT-GACATTG
1 ATTAGCATAATATATTTAG-CATTG
51905201 ATTAG
1 ATTAG
51905206 AATTAGGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 25 0.96
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.45
Consensus pattern (24 bp):
ATTAGCATAATATATTTAGCATTG
Found at i:51912516 original size:12 final size:12
Alignment explanation
Indices: 51912499--51912525 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
51912489 CAAATTTTTT
51912499 TATACATATATA
1 TATACATATATA
51912511 TATACATATATA
1 TATACATATATA
51912523 TAT
1 TAT
51912526 TACTTTTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (12 bp):
TATACATATATA
Found at i:51914325 original size:15 final size:15
Alignment explanation
Indices: 51914302--51914351 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
51914292 TGAATTGCAT
* *
51914302 TGTTCTGCTCTGTTC
1 TGTTTTGCTTTGTTC
51914317 TGTTTTGCTTTGTTTC
1 TGTTTTGCTTTG-TTC
*
51914333 TGTTTTACTTTGTTC
1 TGTTTTGCTTTGTTC
51914348 TGTT
1 TGTT
51914352 GTATTACATC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
15 17 0.55
16 14 0.45
ACGTcount: A:0.02, C:0.16, G:0.18, T:0.64
Consensus pattern (15 bp):
TGTTTTGCTTTGTTC
Found at i:51914335 original size:16 final size:15
Alignment explanation
Indices: 51914312--51914351 Score: 62
Period size: 16 Copynumber: 2.6 Consensus size: 15
51914302 TGTTCTGCTC
*
51914312 TGTTCTGTTTTGCTT
1 TGTTCTGTTTTACTT
51914327 TGTTTCTGTTTTACTT
1 TG-TTCTGTTTTACTT
51914343 TGTTCTGTT
1 TGTTCTGTT
51914352 GTATTACATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.03, C:0.12, G:0.17, T:0.68
Consensus pattern (15 bp):
TGTTCTGTTTTACTT
Found at i:51924083 original size:5 final size:5
Alignment explanation
Indices: 51924075--51924103 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
51924065 TATATTTTGT
51924075 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
51924104 AAGGAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTC
Found at i:51925783 original size:39 final size:40
Alignment explanation
Indices: 51925653--51925789 Score: 138
Period size: 40 Copynumber: 3.5 Consensus size: 40
51925643 GGCGTTTGGA
* * * *
51925653 TAAAAAACGCCTCTAAAAATCAATCTTTAGCGGCG-CTTC
1 TAAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGTTTTC
* * * *
51925692 TAGAAAAACGCCGCTACAGATCAAGTATTCGCGGCGCTTTTC
1 TA-AAAAACGCCGCTAAAAATCAAGCATTAGCGGCG-TTTTC
51925734 T-AAAAACGCCGCTAAAAATC-AGCATTAGCGGCGTTTTC
1 TAAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGTTTTC
* *
51925772 CAAAAAGCGCCGC-AAAAA
1 TAAAAAACGCCGCTAAAAA
51925790 CCTAAGCCCA
Statistics
Matches: 80, Mismatches: 14, Indels: 9
0.78 0.14 0.09
Matches are distributed among these distances:
38 10 0.12
39 23 0.29
40 43 0.54
42 4 0.05
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.21
Consensus pattern (40 bp):
TAAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGTTTTC
Found at i:51925879 original size:41 final size:41
Alignment explanation
Indices: 51925822--51926061 Score: 374
Period size: 41 Copynumber: 5.9 Consensus size: 41
51925812 TTGTTAGTTT
* *
51925822 TTGGGACTTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGC
1 TTGGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
* *
51925863 TTGGGTCTTTAGCGGCGCTTTTGAAGAAGCGCTGCTAATGC
1 TTGGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
*
51925904 TTGGGTCTTTAGTGGCGTTTTTGAAGAAGCGCCGCTAATGC
1 TTGGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
* * * *
51925945 TCGGGTCTTTAGCGGCGGTTTTGAAGAAGCGTCGTTAATGC
1 TTGGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
*
51925986 TTGGGTCTTTAGCGGCGCTTTTGAAGAAGCGCCGCTAATGC
1 TTGGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
51926027 TTGGGTCTTTAGCGGCGTTTTTGGAA-AAGCGCCGC
1 TTGGGTCTTTAGCGGCGTTTTT-GAAGAAGCGCCGC
51926062 AAAAAATATT
Statistics
Matches: 181, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
41 178 0.98
42 3 0.02
ACGTcount: A:0.17, C:0.19, G:0.32, T:0.31
Consensus pattern (41 bp):
TTGGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
Found at i:51926545 original size:14 final size:14
Alignment explanation
Indices: 51926358--51926548 Score: 95
Period size: 14 Copynumber: 13.4 Consensus size: 14
51926348 TATCACAATA
* *
51926358 GTTTAAGGTTTTTG
1 GTTTAGGGTTTATG
*
51926372 GTTTAGGGTATATG
1 GTTTAGGGTTTATG
* **
51926386 GTTTAGAGTTTAAA
1 GTTTAGGGTTTATG
51926400 GTTTAGGAGTTACTAT-
1 GTTTAGG-GTT--TATG
*
51926416 -TTTAAGGTTTATG
1 GTTTAGGGTTTATG
* *
51926429 GATTATGGGTTTAGG
1 GTTTA-GGGTTTATG
* * *
51926444 GGTTATGTTTTATG
1 GTTTAGGGTTTATG
* *
51926458 GTTTATGGTTTAAAG
1 GTTTAGGGTTT-ATG
* *
51926473 G-TTGGGGTTTAAG
1 GTTTAGGGTTTATG
51926486 GTTTAGAGG-TTATG
1 GTTTAG-GGTTTATG
* *
51926500 TGTTAAGGGTTTAGG
1 -GTTTAGGGTTTATG
51926515 GTTTTAGGGTTTA-G
1 G-TTTAGGGTTTATG
* *
51926529 GTTTATGGTTTAGG
1 GTTTAGGGTTTATG
51926543 GTTTAG
1 GTTTAG
51926549 ATTAACTAGT
Statistics
Matches: 135, Mismatches: 29, Indels: 26
0.71 0.15 0.14
Matches are distributed among these distances:
12 3 0.02
13 14 0.10
14 73 0.54
15 43 0.32
17 2 0.01
ACGTcount: A:0.20, C:0.01, G:0.32, T:0.47
Consensus pattern (14 bp):
GTTTAGGGTTTATG
Found at i:51926548 original size:7 final size:7
Alignment explanation
Indices: 51926416--51926548 Score: 74
Period size: 7 Copynumber: 18.7 Consensus size: 7
51926406 GAGTTACTAT
*
51926416 TTTAAGG
1 TTTAGGG
*
51926423 TTTATGG
1 TTTAGGG
*
51926430 ATTATGGG
1 TTTA-GGG
51926438 TTTAGGG
1 TTTAGGG
* * *
51926445 GTTATGT
1 TTTAGGG
*
51926452 TTTATGG
1 TTTAGGG
*
51926459 TTTATGG
1 TTTAGGG
*
51926466 TTTAAAGG
1 TTT-AGGG
*
51926474 -TTGGGG
1 TTTAGGG
*
51926480 TTTAAGG
1 TTTAGGG
51926487 TTTAGAGG
1 TTTAG-GG
*
51926495 -TTATGTG
1 TTTA-GGG
*
51926502 TTAAGGG
1 TTTAGGG
51926509 TTTAGGG
1 TTTAGGG
51926516 TTTTAGGG
1 -TTTAGGG
51926524 TTTA-GG
1 TTTAGGG
*
51926530 TTTATGG
1 TTTAGGG
51926537 TTTAGGG
1 TTTAGGG
51926544 TTTAG
1 TTTAG
51926549 ATTAACTAGT
Statistics
Matches: 98, Mismatches: 20, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
6 8 0.08
7 70 0.71
8 20 0.20
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.47
Consensus pattern (7 bp):
TTTAGGG
Found at i:51927170 original size:13 final size:15
Alignment explanation
Indices: 51927142--51927173 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
51927132 CTCGTATTAT
51927142 TATTAATTTAATATA
1 TATTAATTTAATATA
51927157 TATTAA-TT-ATATA
1 TATTAATTTAATATA
51927170 TATT
1 TATT
51927174 TTTCATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 9 0.53
14 2 0.12
15 6 0.35
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATTAATTTAATATA
Found at i:51931422 original size:42 final size:43
Alignment explanation
Indices: 51931390--51931617 Score: 248
Period size: 43 Copynumber: 5.3 Consensus size: 43
51931380 TTTTTGCTAG
* * *
51931390 AAGCGCCGCTAAAGGT-TTGTTCTTTAGCGGCGTTTGT-AAGAA
1 AAGCGCCGCTAAAGATCGTGGTCTTTAGCGGCGTTTGTGAA-AA
* * * * *
51931432 AAGTGCCGTTAAAGGTCGTGGTCTTTAGCGGCGTTTGTGGAAT
1 AAGCGCCGCTAAAGATCGTGGTCTTTAGCGGCGTTTGTGAAAA
* *
51931475 AAGCGCCGCTATAGATCGTGGTCTTTAGCGGCGTTTGTGGGAAA
1 AAGCGCCGCTAAAGATCGTGGTCTTTAGCGGCGTTTGT-GAAAA
* * *
51931519 AA-CGCCGTTATAGATCGTGGTCTTTAGCGGCGTTTGTTG-GAA
1 AAGCGCCGCTAAAGATCGTGGTCTTTAGCGGCGTTTG-TGAAAA
* * **
51931561 AAGCGTCGCTATAGATCGTGGTCTTTAGCGGCGTTTGTGGGAA
1 AAGCGCCGCTAAAGATCGTGGTCTTTAGCGGCGTTTGTGAAAA
51931604 AAGCGCCGCTAAAG
1 AAGCGCCGCTAAAG
51931618 TTAGCGATGC
Statistics
Matches: 163, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
42 20 0.12
43 135 0.83
44 8 0.05
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.29
Consensus pattern (43 bp):
AAGCGCCGCTAAAGATCGTGGTCTTTAGCGGCGTTTGTGAAAA
Found at i:51931466 original size:43 final size:43
Alignment explanation
Indices: 51931410--51931614 Score: 304
Period size: 43 Copynumber: 4.8 Consensus size: 43
51931400 AAAGGTTTGT
** * * * *
51931410 TCTTTAGCGGCGTTTGTAAGAAAAGTGCCGTTAAAGGTCGTGG
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTATAGATCGTGG
51931453 TCTTTAGCGGCGTTTGT-GGAATAAGCGCCGCTATAGATCGTGG
1 TCTTTAGCGGCGTTTGTGGGAA-AAGCGCCGCTATAGATCGTGG
* *
51931496 TCTTTAGCGGCGTTTGTGGGAAAAACGCCGTTATAGATCGTGG
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTATAGATCGTGG
* *
51931539 TCTTTAGCGGCGTTTGTTGGAAAAGCGTCGCTATAGATCGTGG
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTATAGATCGTGG
51931582 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTA
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTA
51931615 AAGTTAGCGA
Statistics
Matches: 147, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
42 3 0.02
43 140 0.95
44 4 0.03
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.30
Consensus pattern (43 bp):
TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTATAGATCGTGG
Found at i:51931717 original size:22 final size:22
Alignment explanation
Indices: 51931689--51931732 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
51931679 TAGCGGCGCT
*
51931689 AAAAAGCGCCGCTAAAGGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
51931711 AAAAAGCGCCGCTAAAAGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
51931733 TTTTGGTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.27, G:0.20, T:0.09
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAGCCTA
Found at i:51934274 original size:26 final size:26
Alignment explanation
Indices: 51934236--51934297 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
51934226 ACATATTTTC
51934236 TCAAAATTTTACC-AGAGACAAAATCG
1 TCAAAATTTTACCAAG-GACAAAATCG
* *
51934262 TTAAAATTTTACCAAGGATAAAATCG
1 TCAAAATTTTACCAAGGACAAAATCG
*
51934288 TCAAGATTTT
1 TCAAAATTTT
51934298 GCTTGGGGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 29 0.94
27 2 0.06
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.31
Consensus pattern (26 bp):
TCAAAATTTTACCAAGGACAAAATCG
Found at i:51934685 original size:19 final size:19
Alignment explanation
Indices: 51934661--51934703 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
51934651 ATTTAGTATT
51934661 TAATTGTAATCTAAAATGA
1 TAATTGTAATCTAAAATGA
51934680 TAATTGTAATCTAAAATGA
1 TAATTGTAATCTAAAATGA
*
51934699 CAATT
1 TAATT
51934704 ACTCACCCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (19 bp):
TAATTGTAATCTAAAATGA
Found at i:51936560 original size:23 final size:23
Alignment explanation
Indices: 51936534--51936577 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
51936524 CATTGCATCG
*
51936534 AAGTGCCACTTTTATTTGCACCA
1 AAGTGCCACTTTCATTTGCACCA
51936557 AAGTGCCACTTTCATTTGCAC
1 AAGTGCCACTTTCATTTGCAC
51936578 GCATAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (23 bp):
AAGTGCCACTTTCATTTGCACCA
Found at i:51940569 original size:91 final size:90
Alignment explanation
Indices: 51940410--51940576 Score: 280
Period size: 91 Copynumber: 1.8 Consensus size: 90
51940400 CTCCTGCTTA
* *
51940410 TGGATGAACCACAAGTGTTGTAGGTTAATACACTACCAGTAATTGTGAATACACAACGGATTTGC
1 TGGATAAACCACAAGTGTTGTAGGTTAATACACTACCAGTAATTGTGAATACACAACGGATTTAC
51940475 AGATAAAAGTTGCCATTAAATGTTG
66 AGATAAAAGTTGCCATTAAATGTTG
* * *
51940500 TGGATAAACCACAATTGTTTGTAGGTTAATACGCTACCAGTAATTGTGAATACACAATGGATTTA
1 TGGATAAACCACAAGTG-TTGTAGGTTAATACACTACCAGTAATTGTGAATACACAACGGATTTA
51940565 CAGATAAAAGTT
65 CAGATAAAAGTT
51940577 ACAAGTAAAA
Statistics
Matches: 71, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
90 15 0.21
91 56 0.79
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.30
Consensus pattern (90 bp):
TGGATAAACCACAAGTGTTGTAGGTTAATACACTACCAGTAATTGTGAATACACAACGGATTTAC
AGATAAAAGTTGCCATTAAATGTTG
Found at i:51956416 original size:41 final size:40
Alignment explanation
Indices: 51956371--51956573 Score: 223
Period size: 41 Copynumber: 5.0 Consensus size: 40
51956361 TTGTATAAAA
* * * *
51956371 CACCGGCATAAAGCCTGCTAGGCACAAAGCCCGATACATT
1 CACCGGCATAAAGCCTGCTAGACATAAAGTCTGATACATT
* *
51956411 CCACCGGCACAAAGCCTGCTAGACATAAGGTCTGATACATTT
1 -CACCGGCATAAAGCCTGCTAGACATAAAGTCTGATACA-TT
51956453 CACCGGCACT-AAGCCTGCTAGACATAAAGTCTGAAGTA-ATT
1 CACCGGCA-TAAAGCCTGCTAGACATAAAGTCTG-A-TACATT
* *
51956494 CACCGGCATCAAGCCTGCTAGACGTAAAGTCTGAAATA-ATT
1 CACCGGCATAAAGCCTGCTAGACATAAAGTCTG--ATACATT
* * *
51956535 CACCGGCATCAAGCCTGCTAGACGTAAAGTCTGAAACAT
1 CACCGGCATAAAGCCTGCTAGACATAAAGTCTGATACAT
51956574 CTTATTTTCA
Statistics
Matches: 145, Mismatches: 10, Indels: 15
0.85 0.06 0.09
Matches are distributed among these distances:
39 2 0.01
40 3 0.02
41 132 0.91
42 6 0.04
43 2 0.01
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.20
Consensus pattern (40 bp):
CACCGGCATAAAGCCTGCTAGACATAAAGTCTGATACATT
Found at i:51957242 original size:16 final size:17
Alignment explanation
Indices: 51957221--51957255 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
51957211 ATCTAATAAT
51957221 TTATACAT-GTATATAC
1 TTATACATCGTATATAC
*
51957237 TTATACATCGTTTATAC
1 TTATACATCGTATATAC
51957254 TT
1 TT
51957256 CGACTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.49
Consensus pattern (17 bp):
TTATACATCGTATATAC
Found at i:51971546 original size:21 final size:21
Alignment explanation
Indices: 51971522--51971589 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
51971512 ACTCATATGA
*
51971522 GTTTCAGTTTAACCCTTCTGG
1 GTTTCAATTTAACCCTTCTGG
* * *
51971543 GTTTCAATTCAACTCTTCTGA
1 GTTTCAATTTAACCCTTCTGG
* *
51971564 GCTTCAATTTAACCCTTATGG
1 GTTTCAATTTAACCCTTCTGG
51971585 GTTTC
1 GTTTC
51971590 CATTCAGCTC
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.43
Consensus pattern (21 bp):
GTTTCAATTTAACCCTTCTGG
Found at i:51971576 original size:42 final size:42
Alignment explanation
Indices: 51971511--51971631 Score: 134
Period size: 42 Copynumber: 2.9 Consensus size: 42
51971501 AGCTTCAGTT
* * * *
51971511 AACTCATATGAGTTTCAGTTTAACCCTTCTGGGTTTCAATTC
1 AACTCCTATGAGCTTCAATTTAACCCTTATGGGTTTCAATTC
* * *
51971553 AACTCTTCTGAGCTTCAATTTAACCCTTATGGGTTTCCATTC
1 AACTCCTATGAGCTTCAATTTAACCCTTATGGGTTTCAATTC
* ** * *
51971595 AGCTCCTATGAGCTTCTCTTCAACCCTTACGGGTTTC
1 AACTCCTATGAGCTTCAATTTAACCCTTATGGGTTTC
51971632 TGTTTAGCAC
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 66 1.00
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (42 bp):
AACTCCTATGAGCTTCAATTTAACCCTTATGGGTTTCAATTC
Found at i:51973820 original size:15 final size:16
Alignment explanation
Indices: 51973796--51973825 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
51973786 GCATTGGAAC
51973796 TTTTATTTTATTTTAT
1 TTTTATTTTATTTTAT
51973812 TTTTA-TTTATTTTA
1 TTTTATTTTATTTTA
51973826 CTTAGTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTATTTTATTTTAT
Found at i:51975544 original size:26 final size:26
Alignment explanation
Indices: 51975515--51975584 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
51975505 TGCAGATACT
*
51975515 CCACAGCTTGTGTGAGCAGGCCCATC
1 CCACAGCTCGTGTGAGCAGGCCCATC
* * * *
51975541 CCACAACTCATGTGAACAGGCCCATT
1 CCACAGCTCGTGTGAGCAGGCCCATC
*
51975567 TCACAGCTCGTGTGAGCA
1 CCACAGCTCGTGTGAGCA
51975585 ATGATGTAAA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.24, C:0.33, G:0.23, T:0.20
Consensus pattern (26 bp):
CCACAGCTCGTGTGAGCAGGCCCATC
Found at i:51979178 original size:19 final size:19
Alignment explanation
Indices: 51979156--51979198 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
51979146 TATTAAGATG
51979156 AAATTAAT-ATATAAAAAA
1 AAATTAATAATATAAAAAA
* *
51979174 TAAATTAGTAATATAATAAA
1 -AAATTAATAATATAAAAAA
51979194 AAATT
1 AAATT
51979199 TCAAAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (19 bp):
AAATTAATAATATAAAAAA
Found at i:51992619 original size:15 final size:15
Alignment explanation
Indices: 51992599--51992628 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
51992589 TGTCATATAG
51992599 ATTCAGAAGTTGTCT
1 ATTCAGAAGTTGTCT
51992614 ATTCAGAAGTTGTCT
1 ATTCAGAAGTTGTCT
51992629 TTCTTAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (15 bp):
ATTCAGAAGTTGTCT
Found at i:51993231 original size:91 final size:91
Alignment explanation
Indices: 51993076--51993283 Score: 319
Period size: 91 Copynumber: 2.3 Consensus size: 91
51993066 GACAGGTTCT
* ** * *
51993076 CTACAAACACTGGTGGTTTATCCACAAGTTTTACTGGTAGCTTTTATCTGCAAACCCATTGTGTA
1 CTACAAACACTTGTGGTTTATCCACAACATTTAATGGCAGCTTTTATCTGCAAACCCATTGTGTA
*
51993141 TTCACAACTACTGGTAGCGTATTAAC
66 TTCACAACTACTAGTAGCGTATTAAC
* *
51993167 CTACAAACAATTGTGGTTTATCCACAACATTTAATGGCAGCTTTTATCTGTAAACCCATTGTGTA
1 CTACAAACACTTGTGGTTTATCCACAACATTTAATGGCAGCTTTTATCTGCAAACCCATTGTGTA
*
51993232 TTCACAATTACTAGTAGCGTATTAAC
66 TTCACAACTACTAGTAGCGTATTAAC
*
51993258 CTAC-AACACTTGTGGTTCATCCACAA
1 CTACAAACACTTGTGGTTTATCCACAA
51993284 GCCCGAGATA
Statistics
Matches: 106, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
90 20 0.19
91 86 0.81
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (91 bp):
CTACAAACACTTGTGGTTTATCCACAACATTTAATGGCAGCTTTTATCTGCAAACCCATTGTGTA
TTCACAACTACTAGTAGCGTATTAAC
Found at i:51999467 original size:16 final size:16
Alignment explanation
Indices: 51999446--51999483 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
51999436 TTTGGTTCGC
51999446 TGTAATGGAATAAAGG
1 TGTAATGGAATAAAGG
*
51999462 TGTAATGGAATAGAGG
1 TGTAATGGAATAAAGG
*
51999478 CGTAAT
1 TGTAAT
51999484 AGTAATTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.03, G:0.32, T:0.26
Consensus pattern (16 bp):
TGTAATGGAATAAAGG
Found at i:51999516 original size:45 final size:44
Alignment explanation
Indices: 51999465--51999557 Score: 152
Period size: 44 Copynumber: 2.1 Consensus size: 44
51999455 ATAAAGGTGT
51999465 AATGGAATAGAGGCGTAATAGTAATTCAAT-TGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATAGT-ATTC-ATGTGTTTGGTTGAATGG
*
51999510 AATGGAATAGAGGCGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATAGTATTCATGTGTTTGGTTGAATGG
51999554 AATG
1 AATG
51999558 ATGTTGTAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.50
45 22 0.48
ACGTcount: A:0.31, C:0.04, G:0.30, T:0.34
Consensus pattern (44 bp):
AATGGAATAGAGGCGTAATAGTATTCATGTGTTTGGTTGAATGG
Found at i:51999833 original size:120 final size:119
Alignment explanation
Indices: 51999696--52000054 Score: 621
Period size: 120 Copynumber: 3.0 Consensus size: 119
51999686 TTAATCATAT
* *
51999696 TTTAACATAATTATTATTAATTATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATA
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT-
*
51999761 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATAGTATAAAATATAA
65 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
51999816 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATA-T
* *
51999881 AAATATTCTTAAATGAATTTGCTAAAATCATAATATATAATACTATAAAATATAA
65 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
*
51999936 TCTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATA
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATA
**
52000001 GTTATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAA-ATAA
66 AATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
52000054 T
1 T
52000055 ATATAATATA
Statistics
Matches: 228, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
118 5 0.02
119 47 0.21
120 175 0.77
121 1 0.00
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (119 bp):
TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATA
AATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Done.