Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62681010
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1052928 characters in sequence are not A, C, G, or T
File 188 of 210
Found at i:55468291 original size:53 final size:53
Alignment explanation
Indices: 55468209--55468441 Score: 233
Period size: 53 Copynumber: 4.4 Consensus size: 53
55468199 GCACAATAAT
* * *
55468209 AATTGTTTGAAAACACGTAAATTTGTGAAACACGAGAATTTTTTGAAAACGCGAA
1 AATT-TTTGAAAACACGAAAATTTTTGAAACACGA-AATTTTTTGAAAACACGAA
* * *
55468264 AATTTTTG-AAACACAAAAATTTTTGAAACATAGGAATTTTTTGAAAACACGAA
1 AATTTTTGAAAACACGAAAATTTTTGAAACA-CGAAATTTTTTGAAAACACGAA
* * *
55468317 AATTTTTG-AAACACCGAAAA-TTTTGAAAACACGAAGA-GTTTTG-AAACACCAG
1 AATTTTTGAAAACA-CGAAAATTTTTG-AAACACGAA-ATTTTTTGAAAACACGAA
* * ** * *
55468369 AATTTTTGAAAACACGAAGATTTTTGAAGCACGATTTTTTTTAAAAACAAGAA
1 AATTTTTGAAAACACGAAAATTTTTGAAACACGAAATTTTTTGAAAACACGAA
*
55468422 AATTTGTGAAAACACGAAAA
1 AATTTTTGAAAACACGAAAA
55468442 AAAACGAAGA
Statistics
Matches: 147, Mismatches: 23, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
52 31 0.21
53 96 0.65
54 16 0.11
55 4 0.03
ACGTcount: A:0.45, C:0.11, G:0.15, T:0.29
Consensus pattern (53 bp):
AATTTTTGAAAACACGAAAATTTTTGAAACACGAAATTTTTTGAAAACACGAA
Found at i:55468410 original size:35 final size:34
Alignment explanation
Indices: 55468209--55468440 Score: 189
Period size: 35 Copynumber: 6.5 Consensus size: 34
55468199 GCACAATAAT
*
55468209 AATTGTTTGAAAACACGTAAATTTGTG-AAACACGAGA
1 AATT-TTTG-AAACACG-AAATTTTTGAAAACACGA-A
* * *
55468246 ATTTTTTGAAAACGCGAAAATTTTTG-AAACACAAA
1 AATTTTTG-AAACACG-AAATTTTTGAAAACACGAA
* *
55468281 AATTTTTGAAACATAGGAATTTTTTGAAAACACGAA
1 AATTTTTGAAAC--ACGAAATTTTTGAAAACACGAA
*
55468317 AATTTTTGAAACACCGAAAATTTTGAAAACACGAA
1 AATTTTTGAAACA-CGAAATTTTTGAAAACACGAA
* * *
55468352 GAGTTTTGAAACACCAGAATTTTTGAAAACACGAA
1 AATTTTTGAAACACGA-AATTTTTGAAAACACGAA
* * ** * *
55468387 GATTTTTGAAGCACGATTTTTTTTAAAAACAAGAA
1 AATTTTTGAAACACGA-AATTTTTGAAAACACGAA
*
55468422 AATTTGTGAAAACACGAAA
1 AATTTTTG-AAACACGAAA
55468441 AAAAACGAAG
Statistics
Matches: 159, Mismatches: 30, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
34 7 0.04
35 95 0.60
36 54 0.34
37 3 0.02
ACGTcount: A:0.45, C:0.11, G:0.15, T:0.29
Consensus pattern (34 bp):
AATTTTTGAAACACGAAATTTTTGAAAACACGAA
Found at i:55468435 original size:18 final size:18
Alignment explanation
Indices: 55468209--55468441 Score: 201
Period size: 18 Copynumber: 13.1 Consensus size: 18
55468199 GCACAATAAT
*
55468209 AATTGTTTGAAAACACGTA
1 AATT-TTTGAAAACACGAA
*
55468228 AATTTGTG-AAACACGAGA
1 AATTTTTGAAAACACGA-A
* *
55468246 ATTTTTTGAAAACGCGAA
1 AATTTTTGAAAACACGAA
*
55468264 AATTTTTG-AAACACAAA
1 AATTTTTGAAAACACGAA
* *
55468281 AATTTTTG-AAACATAGGA
1 AATTTTTGAAAACA-CGAA
*
55468299 ATTTTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
55468317 AATTTTTG-AAACACCGAA
1 AATTTTTGAAAACA-CGAA
55468335 AA-TTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
* * * *
55468352 GAGTTTTG-AAACACCAG
1 AATTTTTGAAAACACGAA
55468369 AATTTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
* * *
55468387 GATTTTTG-AAGCACGAT
1 AATTTTTGAAAACACGAA
** * *
55468404 TTTTTTTAAAAACAAGAA
1 AATTTTTGAAAACACGAA
*
55468422 AATTTGTGAAAACACGAA
1 AATTTTTGAAAACACGAA
55468440 AA
1 AA
55468442 AAAACGAAGA
Statistics
Matches: 169, Mismatches: 36, Indels: 19
0.75 0.16 0.08
Matches are distributed among these distances:
17 67 0.40
18 86 0.51
19 16 0.09
ACGTcount: A:0.45, C:0.11, G:0.15, T:0.29
Consensus pattern (18 bp):
AATTTTTGAAAACACGAA
Found at i:55468492 original size:18 final size:19
Alignment explanation
Indices: 55468458--55468493 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
55468448 AAGATTTGTG
*
55468458 AAAACATGGATTTTTTTTT
1 AAAACATGGAATTTTTTTT
55468477 AAAACAT-GAATTTTTTT
1 AAAACATGGAATTTTTTT
55468494 ATTTTTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.36, C:0.06, G:0.08, T:0.50
Consensus pattern (19 bp):
AAAACATGGAATTTTTTTT
Found at i:55468634 original size:19 final size:19
Alignment explanation
Indices: 55468610--55468647 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
55468600 CGTGATTCTA
55468610 TTAAAACACGAAAATTTTT
1 TTAAAACACGAAAATTTTT
55468629 TTAAAACACGAAAATTTTT
1 TTAAAACACGAAAATTTTT
55468648 GAATATTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.11, G:0.05, T:0.37
Consensus pattern (19 bp):
TTAAAACACGAAAATTTTT
Found at i:55468996 original size:11 final size:11
Alignment explanation
Indices: 55468975--55469030 Score: 58
Period size: 11 Copynumber: 4.6 Consensus size: 11
55468965 TTGGGCCTCT
55468975 TTTTCTTTCTTC
1 TTTT-TTTCTTC
*
55468987 TTTTTTTCTTT
1 TTTTTTTCTTC
55468998 TTTTTTCTCTTC
1 TTTTTT-TCTTC
55469010 TTTTTTCTTTCTTC
1 --TTTT-TTTCTTC
55469024 TTTTTTT
1 TTTTTTT
55469031 TCTGGCCTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
11 15 0.39
12 12 0.32
14 9 0.24
15 2 0.05
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTTTTCTTC
Found at i:55469000 original size:10 final size:10
Alignment explanation
Indices: 55468972--55469019 Score: 60
Period size: 10 Copynumber: 4.5 Consensus size: 10
55468962 GACTTGGGCC
*
55468972 TCTTTTTCTT
1 TCTTTTTTTT
55468982 TCTTCTTTTTT
1 TCTT-TTTTTT
55468993 TCTTTTTTTT
1 TCTTTTTTTT
55469003 TCTCTTCTTTTT
1 TCT-TT-TTTTT
55469015 TCTTT
1 TCTTT
55469020 CTTCTTTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
10 13 0.38
11 13 0.38
12 8 0.24
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (10 bp):
TCTTTTTTTT
Found at i:55469008 original size:23 final size:21
Alignment explanation
Indices: 55468974--55469026 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 21
55468964 CTTGGGCCTC
55468974 TTTTTCTTTCTTCTTTTTTTCT
1 TTTTTCTTTCTTC-TTTTTTCT
*
55468996 TTTTTTTTCTCTTCTTTTTTCT
1 TTTTTCTT-TCTTCTTTTTTCT
*
55469018 TTCTTCTTT
1 TTTTTCTTT
55469027 TTTTTCTGGC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.04
22 21 0.78
23 5 0.19
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (21 bp):
TTTTTCTTTCTTCTTTTTTCT
Found at i:55469010 original size:26 final size:26
Alignment explanation
Indices: 55468974--55469030 Score: 82
Period size: 25 Copynumber: 2.2 Consensus size: 26
55468964 CTTGGGCCTC
55468974 TTTTTCTTTCTTCTTTT-TTTCTT-TT
1 TTTTTCTTTCTT-TTTTCTTTCTTCTT
55468999 TTTTTCTCTTCTTTTTTCTTTCTTCTT
1 TTTTTCT-TTCTTTTTTCTTTCTTCTT
55469026 TTTTT
1 TTTTT
55469031 TCTGGCCTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 11 0.38
26 11 0.38
27 7 0.24
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (26 bp):
TTTTTCTTTCTTTTTTCTTTCTTCTT
Found at i:55469030 original size:15 final size:14
Alignment explanation
Indices: 55468974--55469029 Score: 68
Period size: 12 Copynumber: 4.4 Consensus size: 14
55468964 CTTGGGCCTC
55468974 TTTTTCTTTCTTC-
1 TTTTTCTTTCTTCT
55468987 -TTTT-TTTCTT-T
1 TTTTTCTTTCTTCT
*
55468998 TTTTT-TCTCTTCT
1 TTTTTCTTTCTTCT
55469011 TTTTTCTTTCTTCT
1 TTTTTCTTTCTTCT
55469025 TTTTT
1 TTTTT
55469030 TTCTGGCCTG
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
11 6 0.16
12 13 0.35
13 6 0.16
14 12 0.32
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTCTTTCTTCT
Found at i:55469436 original size:18 final size:17
Alignment explanation
Indices: 55469413--55469466 Score: 69
Period size: 17 Copynumber: 3.3 Consensus size: 17
55469403 TTTTTTCTTC
55469413 TTTTTCTTCTCTTTTTT
1 TTTTTCTTCTCTTTTTT
55469430 TTCTTTC--C-CTTTTTT
1 TT-TTTCTTCTCTTTTTT
*
55469445 CTTTTCTTCTCTTTTTT
1 TTTTTCTTCTCTTTTTT
55469462 TTTTT
1 TTTTT
55469467 TCCTTTTCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
14 4 0.13
15 8 0.26
16 2 0.06
17 13 0.42
18 4 0.13
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTTTCTTCTCTTTTTT
Found at i:55469450 original size:32 final size:33
Alignment explanation
Indices: 55469405--55469474 Score: 108
Period size: 32 Copynumber: 2.2 Consensus size: 33
55469395 TTTTTTATTT
55469405 TTTTCTTCTTTTTCTTCTCTTTTTTTTCTTTCCC
1 TTTTCTTCTTTTTCTTCTCTTTTTTTT-TTTCCC
*
55469439 TTTT-TTC-TTTTCTTCTCTTTTTTTTTTTTCC
1 TTTTCTTCTTTTTCTTCTCTTTTTTTTTTTCCC
55469470 TTTTC
1 TTTTC
55469475 CAAACCCTAG
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
31 9 0.26
32 18 0.53
33 3 0.09
34 4 0.12
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (33 bp):
TTTTCTTCTTTTTCTTCTCTTTTTTTTTTTCCC
Found at i:55469467 original size:18 final size:18
Alignment explanation
Indices: 55469413--55469468 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
55469403 TTTTTTCTTC
55469413 TTTTTCTTCTCTTTTTTT
1 TTTTTCTTCTCTTTTTTT
*
55469431 TCTTTC--C-C-TTTTTT
1 TTTTTCTTCTCTTTTTTT
*
55469445 CTTTTCTTCTCTTTTTTT
1 TTTTTCTTCTCTTTTTTT
55469463 TTTTTC
1 TTTTTC
55469469 CTTTTCCAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
14 10 0.33
15 1 0.03
16 2 0.07
17 1 0.03
18 16 0.53
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTCTTCTCTTTTTTT
Found at i:55470230 original size:29 final size:29
Alignment explanation
Indices: 55470149--55470257 Score: 94
Period size: 30 Copynumber: 3.7 Consensus size: 29
55470139 AGAAAAATAT
*
55470149 GGGCCAAAATGTAATTTCTAGAAAGTTTAG
1 GGGCCAAAATGTAATTTATA-AAAGTTTAG
** *
55470179 GGGCCTGAATGTAATTTACAAAA-TATTAG
1 GGGCCAAAATGTAATTTATAAAAGT-TTAG
* * * *
55470208 GGGTCAAAATGTAATTTTTAAAAAATTTAA
1 GGGCCAAAATGTAATTTAT-AAAAGTTTAG
* *
55470238 AGGCTAAAATGTAATTTATA
1 GGGCCAAAATGTAATTTATA
55470258 TTTTTTGCAT
Statistics
Matches: 62, Mismatches: 14, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
28 1 0.02
29 22 0.35
30 38 0.61
31 1 0.02
ACGTcount: A:0.41, C:0.07, G:0.18, T:0.33
Consensus pattern (29 bp):
GGGCCAAAATGTAATTTATAAAAGTTTAG
Found at i:55471496 original size:8 final size:8
Alignment explanation
Indices: 55471483--55471512 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
55471473 ACAAATTTAA
55471483 AAAATTCT
1 AAAATTCT
55471491 AAAATTCT
1 AAAATTCT
*
55471499 AAAATTCC
1 AAAATTCT
55471507 AAAATT
1 AAAATT
55471513 GAAAGTTACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (8 bp):
AAAATTCT
Found at i:55475458 original size:11 final size:11
Alignment explanation
Indices: 55475442--55475468 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
55475432 TTTACTTTAT
55475442 TTATTTTATTA
1 TTATTTTATTA
55475453 TTATTTTATTA
1 TTATTTTATTA
55475464 TTATT
1 TTATT
55475469 AAAATTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:55481840 original size:9 final size:9
Alignment explanation
Indices: 55481822--55481906 Score: 118
Period size: 9 Copynumber: 9.4 Consensus size: 9
55481812 TTTGGTTAAA
55481822 AATTAACCG
1 AATTAACCG
*
55481831 AATTACCCG
1 AATTAACCG
55481840 AATTAACCG
1 AATTAACCG
*
55481849 AATTAA-CT
1 AATTAACCG
*
55481857 AGATTACCCG
1 A-ATTAACCG
55481867 AATTAACCG
1 AATTAACCG
*
55481876 AATTACCCG
1 AATTAACCG
55481885 AATTAACCG
1 AATTAACCG
55481894 AATTAACCG
1 AATTAACCG
55481903 AATT
1 AATT
55481907 GAATCACTAC
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
8 2 0.03
9 62 0.94
10 2 0.03
ACGTcount: A:0.41, C:0.24, G:0.11, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:55482049 original size:18 final size:18
Alignment explanation
Indices: 55482009--55482052 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
55481999 AATTTTTATG
**
55482009 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
55482027 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
55482045 CTTGGGTT
1 ATTGGGTT
55482053 TGGATTGAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:55484448 original size:33 final size:29
Alignment explanation
Indices: 55484396--55484458 Score: 81
Period size: 33 Copynumber: 2.0 Consensus size: 29
55484386 TCTAACTTAG
*
55484396 ATAAAAAAAAATAAATTCAAACCCCTAAT
1 ATAAAAAAAAATAAATTCAAACCCCAAAT
55484425 ATAAAAAAAAATTGACAATTTCAAACCCCAAAT
1 ATAAAAAAAAA-T-A-AA-TTCAAACCCCAAAT
55484458 A
1 A
55484459 ATAATTTAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 11 0.38
30 1 0.03
31 1 0.03
32 2 0.07
33 14 0.48
ACGTcount: A:0.60, C:0.17, G:0.02, T:0.21
Consensus pattern (29 bp):
ATAAAAAAAAATAAATTCAAACCCCAAAT
Found at i:55488095 original size:11 final size:11
Alignment explanation
Indices: 55488075--55488133 Score: 55
Period size: 11 Copynumber: 5.3 Consensus size: 11
55488065 AGATAAATGT
*
55488075 TATTTAATTAA
1 TATTTTATTAA
55488086 TATTTTATTAA
1 TATTTTATTAA
* *
55488097 GATTTTTAGTAA
1 TA-TTTTATTAA
*
55488109 TATTTTATTAT
1 TATTTTATTAA
**
55488120 TAAATTATTAA
1 TATTTTATTAA
55488131 TAT
1 TAT
55488134 AGAAGGGAGG
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
11 28 0.76
12 9 0.24
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:55492959 original size:72 final size:72
Alignment explanation
Indices: 55492833--55492973 Score: 228
Period size: 72 Copynumber: 2.0 Consensus size: 72
55492823 TTAGGTTTAG
* ** * *
55492833 AAAAGGGATCATGCCCAGTAAGTTAGGACACAATCTTTTCTTAATTCCCTAGATCTTTTAAAACT
1 AAAAAGGATCATGCCCAGTAAGTTAGGACACAATCTCCTCTTAATTCCCGAGATCGTTTAAAACT
55492898 TGAGAAA
66 TGAGAAA
*
55492905 AAAAAGGATCATGCCCAGTAAGTTAGGACACGATCTCCTCTTAATTCCCGAGATCGTTTAAAACT
1 AAAAAGGATCATGCCCAGTAAGTTAGGACACAATCTCCTCTTAATTCCCGAGATCGTTTAAAACT
55492970 TGAG
66 TGAG
55492974 TTTGAAAGGA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 63 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (72 bp):
AAAAAGGATCATGCCCAGTAAGTTAGGACACAATCTCCTCTTAATTCCCGAGATCGTTTAAAACT
TGAGAAA
Found at i:55493677 original size:8 final size:8
Alignment explanation
Indices: 55493664--55493689 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
55493654 AATATTAAAC
55493664 ATGTATAT
1 ATGTATAT
55493672 ATGTATAT
1 ATGTATAT
55493680 ATGTATAT
1 ATGTATAT
55493688 AT
1 AT
55493690 ATAGCAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (8 bp):
ATGTATAT
Found at i:55493873 original size:3 final size:3
Alignment explanation
Indices: 55493816--55493853 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
55493806 AAATCTGATG
55493816 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
55493854 GATGATGATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:55495622 original size:20 final size:21
Alignment explanation
Indices: 55495586--55495624 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
55495576 TAGGCGCCAA
55495586 TGAATAAAATAATAATTTTTT
1 TGAATAAAATAATAATTTTTT
55495607 TGAATAAAAT-ATAATTTT
1 TGAATAAAATAATAATTTT
55495625 ATACTTTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (21 bp):
TGAATAAAATAATAATTTTTT
Found at i:55495715 original size:27 final size:27
Alignment explanation
Indices: 55495672--55495774 Score: 179
Period size: 27 Copynumber: 3.8 Consensus size: 27
55495662 TAGTATTGGC
* *
55495672 GCCTATCTGGAATGCGCCAATGGTGGT
1 GCCTATCTGGGAGGCGCCAATGGTGGT
55495699 GCCTATCTGGGAGGCGCCAATGGTGGT
1 GCCTATCTGGGAGGCGCCAATGGTGGT
*
55495726 GCCTATTTGGGAGGCGCCAATGGTGGT
1 GCCTATCTGGGAGGCGCCAATGGTGGT
55495753 GCCTATCTGGGAGGCGCCAATG
1 GCCTATCTGGGAGGCGCCAATG
55495775 TGATTTTTCT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.17, C:0.22, G:0.38, T:0.23
Consensus pattern (27 bp):
GCCTATCTGGGAGGCGCCAATGGTGGT
Found at i:55497427 original size:29 final size:30
Alignment explanation
Indices: 55497368--55497427 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
55497358 TCCGAGCCTT
**
55497368 GGGGCAAAAATGTAATTATGTAAAATTTTA
1 GGGGCAAAAATGTAATTATGTAAAAAGTTA
* *
55497398 GGGGCAAAATTGTAATTTTG-AAAAAGTTA
1 GGGGCAAAAATGTAATTATGTAAAAAGTTA
55497427 G
1 G
55497428 AGTCGAGGGC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.42, C:0.03, G:0.23, T:0.32
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGTAAAAAGTTA
Found at i:55497656 original size:13 final size:13
Alignment explanation
Indices: 55497638--55497668 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
55497628 TTCCAGCAAC
55497638 TATGAATTTATTT
1 TATGAATTTATTT
55497651 TATGAATTTATTT
1 TATGAATTTATTT
*
55497664 GATGA
1 TATGA
55497669 TGATCTAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (13 bp):
TATGAATTTATTT
Found at i:55497877 original size:50 final size:50
Alignment explanation
Indices: 55497763--55498004 Score: 277
Period size: 50 Copynumber: 4.7 Consensus size: 50
55497753 ATTTGGGTAA
* * * * * *
55497763 AGAGATCCCATGTAAGACCATGTGTGGGACATGCCATTGGCATCCTTAAGATCATA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC----GA-GATG
* *
55497819 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
* *
55497869 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
* * * *
55497919 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACCAACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
**
55497969 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
55498005 TTTGGCATGT
Statistics
Matches: 163, Mismatches: 22, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
50 93 0.57
51 31 0.19
55 2 0.01
56 37 0.23
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
Found at i:55497952 original size:100 final size:103
Alignment explanation
Indices: 55497763--55498012 Score: 335
Period size: 100 Copynumber: 2.4 Consensus size: 103
55497753 ATTTGGGTAA
* *
55497763 AGAGATCCCATGTAAGACCATGTGTGGGACATGCCATTGGCATCCTTAAGATCATAAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATAAGAGGTCCC
* * *
55497828 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACCAACACG
* * * *
55497869 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATAAGAGGTCCCCTA
*
55497931 TAAGACCATGTCTGGGACATGGCATGGGCACCAACATG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCAACACG
* *
55497969 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
55498013 GTTATTATCA
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
100 50 0.39
101 39 0.30
105 2 0.02
106 38 0.29
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATAAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCAACACG
Found at i:55505077 original size:29 final size:30
Alignment explanation
Indices: 55505018--55505075 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
55505008 TCCGAGCCTT
*
55505018 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
55505048 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
55505076 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:55505306 original size:13 final size:13
Alignment explanation
Indices: 55505288--55505318 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
55505278 TTCCAGCAAC
55505288 TATGAATTTATTT
1 TATGAATTTATTT
55505301 TATGAATTTATTT
1 TATGAATTTATTT
*
55505314 GATGA
1 TATGA
55505319 TGATCTAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (13 bp):
TATGAATTTATTT
Found at i:55505527 original size:50 final size:50
Alignment explanation
Indices: 55505418--55505575 Score: 181
Period size: 50 Copynumber: 3.0 Consensus size: 50
55505408 GGTAAATAGA
* * * * *
55505418 TCCCATGTAAGACCATGTGTGGGACATGCCATTGGCATCCTTAAGATCATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--GAGAGG
*
55505474 TCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACGAGAGG
* * *
55505524 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACGAGAGG
55505574 TC
1 TC
55505576 NNNNNNNNNN
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
50 53 0.58
52 1 0.01
53 3 0.03
55 2 0.02
56 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.21
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACGAGAGG
Found at i:55508104 original size:38 final size:38
Alignment explanation
Indices: 55508050--55508123 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
55508040 TCAAAAACCC
55508050 AAACTTTTAATAAAATGATTTTTAATTTTTTTATAATT
1 AAACTTTTAATAAAATGATTTTTAATTTTTTTATAATT
*
55508088 AAACTTTTAATGAAATGATTTTTAATTTTTTTATAA
1 AAACTTTTAATAAAATGATTTTTAATTTTTTTATAA
55508124 ACTTTATATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (38 bp):
AAACTTTTAATAAAATGATTTTTAATTTTTTTATAATT
Found at i:55508396 original size:49 final size:49
Alignment explanation
Indices: 55508266--55508544 Score: 368
Period size: 49 Copynumber: 5.7 Consensus size: 49
55508256 AATTAATTAT
*
55508266 AAAATAATTACAATATTCATACAAAAAATTACAATATTACAATA-T-AT-C
1 AAAAAAATTACAATATTCATAC--AAAATTACAATATTACAATATTCATAC
*** *
55508314 -CCCACATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
1 AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
* *
55508362 AAAAAAATTGCAATATTCATACAAAATTATAATATTACAATATTCATAC
1 AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
* * * *
55508411 AAAAAAAATATAATATTCATATAAAATTACAAAATTACAATATTCATAC
1 AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
* * * *
55508460 AAAAGAATTGCAATATTCATACAAAACTATAATATTACAATATTCATAC
1 AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
*
55508509 AAAAAAATTATAATATTCATACAAAATTACAATATT
1 AAAAAAATTACAATATTCATACAAAATTACAATATT
55508545 CATACAAAAA
Statistics
Matches: 197, Mismatches: 30, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
45 20 0.10
46 1 0.01
47 18 0.09
48 1 0.01
49 157 0.80
ACGTcount: A:0.54, C:0.14, G:0.01, T:0.32
Consensus pattern (49 bp):
AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
Found at i:55508425 original size:30 final size:27
Alignment explanation
Indices: 55508319--55508544 Score: 186
Period size: 27 Copynumber: 9.1 Consensus size: 27
55508309 ATATCCCCAC
* *
55508319 ATTACAATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAAATATAAT
55508346 ATTACAATATTCATAC--AAA-A-AA-
1 ATTACAATATTCATACAAAAATATAAT
* *
55508368 ATTGCAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAAATATAAT
55508395 ATTACAATATTCATACAAAAA-A-AAT
1 ATTACAATATTCATACAAAAATATAAT
* * * *
55508420 A-T--AATATTCATATAAAATTACAAA
1 ATTACAATATTCATACAAAAATATAAT
*
55508444 ATTACAATATTCATAC--AAA-A-GA-
1 ATTACAATATTCATACAAAAATATAAT
* *
55508466 ATTGCAATATTCATACAAAACTATAAT
1 ATTACAATATTCATACAAAAATATAAT
55508493 ATTACAATATTCATAC--AAA-A-AA-
1 ATTACAATATTCATACAAAAATATAAT
* * *
55508515 ATTATAATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAAATATAAT
55508542 ATT
1 ATT
55508545 CATACAAAAA
Statistics
Matches: 161, Mismatches: 18, Indels: 40
0.74 0.08 0.18
Matches are distributed among these distances:
22 59 0.37
23 6 0.04
24 13 0.08
25 14 0.09
26 6 0.04
27 63 0.39
ACGTcount: A:0.54, C:0.12, G:0.01, T:0.32
Consensus pattern (27 bp):
ATTACAATATTCATACAAAAATATAAT
Found at i:55508580 original size:98 final size:93
Alignment explanation
Indices: 55508441--55508660 Score: 193
Period size: 103 Copynumber: 2.3 Consensus size: 93
55508431 ATAAAATTAC
* ** *
55508441 AAAATTACAATATTCATACAAAAGAA-T---TGCAATATTCATACAAAACTATAATATTACAATA
1 AAAATTACAATATTCATACAAAA-AATTAAATCCAATATAAATACAAAATTATAATATTACAATA
*
55508502 TTCATACAAAAAAATTATAATATTCATAC
65 TTCATACAAAAAAATTATAATATTCATAA
55508531 AAAATTACAATATTCATACAAAAAATTACTAATCCAAAACTATAAATACAAATTTAATTATAAAA
1 AAAATTACAATATTCATACAAAAAATTA--AATCC--AA-TATAAATAC-AA---AATTAT--AA
* *
55508596 TAATTACAATATTCATAC---AACATTACAATATTCATAAA
55 T-ATTACAATATTCATACAAAAAAATTATAATATTCAT-AA
*
55508634 AAAATTATAATATTCATACAAAAAATT
1 AAAATTACAATATTCATACAAAAAATT
55508661 TAAAATATTC
Statistics
Matches: 105, Mismatches: 8, Indels: 21
0.78 0.06 0.16
Matches are distributed among these distances:
89 2 0.02
90 24 0.23
95 2 0.02
97 2 0.02
98 7 0.07
99 2 0.02
102 20 0.19
103 27 0.26
104 3 0.03
105 16 0.15
ACGTcount: A:0.55, C:0.13, G:0.01, T:0.31
Consensus pattern (93 bp):
AAAATTACAATATTCATACAAAAAATTAAATCCAATATAAATACAAAATTATAATATTACAATAT
TCATACAAAAAAATTATAATATTCATAA
Found at i:55508667 original size:22 final size:21
Alignment explanation
Indices: 55508514--55508678 Score: 103
Period size: 19 Copynumber: 8.0 Consensus size: 21
55508504 CATACAAAAA
*
55508514 AATTATAATATTCATAC--AA
1 AATTAAAATATTCATACAAAA
*
55508533 AATTACAATATTCATACAAAA
1 AATTAAAATATTCATACAAAA
** * * * *
55508554 AATTACTA-ATCCAAAACTATA
1 AATTAAAATATTC-ATACAAAA
* *
55508575 AA-TACAAAT-TTAATTATAAAA
1 AATTA-AAATATTCA-TACAAAA
*
55508596 TAATTACAATATTCATAC--AA
1 -AATTAAAATATTCATACAAAA
* *
55508616 CATTACAATATTCATA-AAAA
1 AATTAAAATATTCATACAAAA
*
55508636 AATTATAATATTCATACAAAA
1 AATTAAAATATTCATACAAAA
55508657 AATTTAAAATATTCATACAAAA
1 AA-TTAAAATATTCATACAAAA
55508679 TTCTAATCTA
Statistics
Matches: 112, Mismatches: 21, Indels: 23
0.72 0.13 0.15
Matches are distributed among these distances:
19 31 0.28
20 24 0.21
21 27 0.24
22 25 0.22
23 5 0.04
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (21 bp):
AATTAAAATATTCATACAAAA
Found at i:55508680 original size:20 final size:20
Alignment explanation
Indices: 55508603--55508680 Score: 86
Period size: 20 Copynumber: 3.9 Consensus size: 20
55508593 AAATAATTAC
* *
55508603 AATATTCATACAACA-TTAC
1 AATATTCATACAAAATTTAA
* * *
55508622 AATATTCATAAAAAAATTAT
1 AATATTCATACAAAATTTAA
55508642 AATATTCATACAAAAAATTTAA
1 AATATTCATAC--AAAATTTAA
55508664 AATATTCATACAAAATT
1 AATATTCATACAAAATT
55508681 CTAATCTAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
19 13 0.26
20 19 0.38
22 18 0.36
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (20 bp):
AATATTCATACAAAATTTAA
Found at i:55508853 original size:3 final size:3
Alignment explanation
Indices: 55508847--55508894 Score: 64
Period size: 3 Copynumber: 16.3 Consensus size: 3
55508837 TTTTTTTTCT
*
55508847 TTC TTC TTC -TC TTC TTC TTC -TC TTC TTC TTC TTC TCC TTC TCTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T-TC
55508891 TTC T
1 TTC T
55508895 CCTTTCTCTC
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
2 4 0.10
3 33 0.82
4 3 0.08
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (3 bp):
TTC
Found at i:55508863 original size:11 final size:11
Alignment explanation
Indices: 55508843--55508894 Score: 72
Period size: 11 Copynumber: 4.8 Consensus size: 11
55508833 ACCTTTTTTT
55508843 TTCT-TTCTTC
1 TTCTCTTCTTC
55508853 TTCTCTTCTTC
1 TTCTCTTCTTC
55508864 TTCTCTTCTTC
1 TTCTCTTCTTC
*
55508875 TTCTTCTCCTTC
1 TTC-TCTTCTTC
55508887 -TCTCTTCT
1 TTCTCTTCT
55508895 CCTTTCTCTC
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
10 9 0.24
11 22 0.58
12 7 0.18
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (11 bp):
TTCTCTTCTTC
Found at i:55508875 original size:22 final size:22
Alignment explanation
Indices: 55508843--55508904 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
55508833 ACCTTTTTTT
*
55508843 TTCT-TTCTTCTTCTCTTCTTC
1 TTCTCTTCTTCTTCTCTCCTTC
55508864 TTCTCTTCTTCTTCTTCTCCTTC
1 TTCTCTTCTTCTTC-TCTCCTTC
*
55508887 -TCTCTTCTCCTTTCTCTC
1 TTCTCTTCTTC-TTCTCTC
55508905 TTTTTTTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
21 4 0.11
22 22 0.61
23 10 0.28
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (22 bp):
TTCTCTTCTTCTTCTCTCCTTC
Found at i:55508901 original size:14 final size:13
Alignment explanation
Indices: 55508845--55508906 Score: 67
Period size: 14 Copynumber: 4.8 Consensus size: 13
55508835 CTTTTTTTTT
55508845 CTTTCTTCTTCT-
1 CTTTCTTCTTCTC
55508857 C-TTCTTCTTCTC
1 CTTTCTTCTTCTC
*
55508869 TTCTTCTTCTTCTC
1 CT-TTCTTCTTCTC
55508883 C-TTCTCTCTTCTC
1 CTTTCT-TCTTCTC
55508896 CTTTCTCTCTT
1 CTTTCT-TCTT
55508907 TTTTTTTTCT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
11 10 0.23
12 5 0.12
13 8 0.19
14 20 0.47
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (13 bp):
CTTTCTTCTTCTC
Found at i:55522170 original size:35 final size:35
Alignment explanation
Indices: 55522092--55522162 Score: 103
Period size: 34 Copynumber: 2.1 Consensus size: 35
55522082 TTTGTGCCCC
*
55522092 TTTTT-TTTTT-ATTTTAATCTCCCTTCTTCAAAA
1 TTTTTATTTTTAATTTTAATCTCCCTTCTACAAAA
*
55522125 TTTTTATTTTTAATTTT-ATCTTCCTTCTACAAAA
1 TTTTTATTTTTAATTTTAATCTCCCTTCTACAAAA
55522159 TTTT
1 TTTT
55522163 ACCTTTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
33 5 0.15
34 24 0.71
35 5 0.15
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (35 bp):
TTTTTATTTTTAATTTTAATCTCCCTTCTACAAAA
Found at i:55524745 original size:4 final size:4
Alignment explanation
Indices: 55524736--55524767 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
55524726 AACATAGATG
55524736 ATAA ATAA ATAA ATAA ATAA ATAA AT-A ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
55524768 ATTAACAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAA
Found at i:55524769 original size:12 final size:12
Alignment explanation
Indices: 55524742--55524804 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
55524732 GATGATAAAT
55524742 AAATAAATAA-A
1 AAATAAATAATA
55524753 TAAATAAATAATA
1 -AAATAAATAATA
* *
55524766 AAATTAACAATA
1 AAATAAATAATA
*
55524778 CGAA-AAATAATA
1 -AAATAAATAATA
*
55524790 ATA-AAATAATA
1 AAATAAATAATA
55524801 AAAT
1 AAAT
55524805 TCAAACTCAA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
11 11 0.28
12 26 0.65
13 3 0.08
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (12 bp):
AAATAAATAATA
Found at i:55525098 original size:29 final size:29
Alignment explanation
Indices: 55525047--55525102 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
55525037 ACAAGAATGC
*
55525047 TTGATTTTATTGATTATGATTAGGTTTAG
1 TTGATTTTATTGATTAAGATTAGGTTTAG
* *
55525076 TTGATTTTATTGCTTAAGTTTAGGTTT
1 TTGATTTTATTGATTAAGATTAGGTTT
55525103 TTAGATGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.21, C:0.02, G:0.20, T:0.57
Consensus pattern (29 bp):
TTGATTTTATTGATTAAGATTAGGTTTAG
Found at i:55533354 original size:25 final size:26
Alignment explanation
Indices: 55533298--55533354 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
55533288 TTAAGATTTG
* *
55533298 TTTTTAATTATTATTATTTAAATTTT
1 TTTTTAATTATTATTACTTAAATATT
55533324 TGTTTTAATT-TTA-TACTTAAATAATT
1 T-TTTTAATTATTATTACTTAAAT-ATT
55533350 TTTTT
1 TTTTT
55533355 TGCTATTGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
25 12 0.44
26 7 0.26
27 8 0.30
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (26 bp):
TTTTTAATTATTATTACTTAAATATT
Found at i:55533355 original size:26 final size:27
Alignment explanation
Indices: 55533293--55533355 Score: 69
Period size: 27 Copynumber: 2.3 Consensus size: 27
55533283 TTAGATTAAG
*
55533293 ATTTGTTTTTAATTATTATTATTTAAAT
1 ATTT-TTTTTAATTATTATTACTTAAAT
55533321 -TTTTGTTTTAATT-TTA-TACTTAAAT
1 ATTTT-TTTTAATTATTATTACTTAAAT
55533346 AATTTTTTTT
1 -ATTTTTTTT
55533356 GCTATTGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
25 8 0.26
26 8 0.26
27 15 0.48
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.67
Consensus pattern (27 bp):
ATTTTTTTTAATTATTATTACTTAAAT
Found at i:55534112 original size:16 final size:16
Alignment explanation
Indices: 55534091--55534122 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
55534081 GTAACCTAAG
55534091 GGAAACAAAAGTGATT
1 GGAAACAAAAGTGATT
55534107 GGAAACAAAAGTGATT
1 GGAAACAAAAGTGATT
55534123 ATTTTGATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.25, T:0.19
Consensus pattern (16 bp):
GGAAACAAAAGTGATT
Found at i:55534259 original size:22 final size:21
Alignment explanation
Indices: 55534234--55534295 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 21
55534224 AATTATAAAT
55534234 TATTGATATTATTTAAATAATA
1 TATT-ATATTATTTAAATAATA
*
55534256 TATTA-A-AATTTAAA-AATTA
1 TATTATATTATTTAAATAA-TA
55534275 TATTATATT-TTTGAAATAATA
1 TATTATATTATTT-AAATAATA
55534296 AAAAAGAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
18 2 0.06
19 14 0.42
20 5 0.15
21 6 0.18
22 6 0.18
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (21 bp):
TATTATATTATTTAAATAATA
Found at i:55534937 original size:21 final size:20
Alignment explanation
Indices: 55534912--55534950 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
55534902 TCTAATTTCG
*
55534912 AATTTAATAAATTTTTATTCC
1 AATTT-ATAAAATTTTATTCC
*
55534933 AATTTTTAAAATTTTATT
1 AATTTATAAAATTTTATT
55534951 TGTAAAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (20 bp):
AATTTATAAAATTTTATTCC
Found at i:55538298 original size:21 final size:21
Alignment explanation
Indices: 55538269--55538371 Score: 75
Period size: 21 Copynumber: 4.9 Consensus size: 21
55538259 AGATAAACAG
*
55538269 AAACCCATAAGGGTTGAACGA
1 AAACCCATAAGGGTTAAACGA
* * * *
55538290 AAGCTCATAAGAGCTAAACGA
1 AAACCCATAAGGGTTAAACGA
*
55538311 AAACCCATAAGGGTCAAAC-A
1 AAACCCATAAGGGTTAAACGA
* * * * *
55538331 GAAGCTCAAAAGAGCTT-AACGG
1 -AAACCCATAAG-GGTTAAACGA
55538353 AAACCCATAAGGGTTAAAC
1 AAACCCATAAGGGTTAAAC
55538372 AGAAGCTCAA
Statistics
Matches: 58, Mismatches: 20, Indels: 8
0.67 0.23 0.09
Matches are distributed among these distances:
20 4 0.07
21 52 0.90
22 2 0.03
ACGTcount: A:0.46, C:0.20, G:0.20, T:0.14
Consensus pattern (21 bp):
AAACCCATAAGGGTTAAACGA
Found at i:55538315 original size:42 final size:42
Alignment explanation
Indices: 55538243--55538435 Score: 205
Period size: 42 Copynumber: 4.6 Consensus size: 42
55538233 CTGAAGGCTG
* * * *
55538243 AACAGAAGTTCATGAGAGATAAAC-AGAAACCCATAAGGGTTG
1 AACAGAAGCTCATAAGAGCTAAACGA-AAACCCATAAGGGTTA
*
55538285 AAC-GAAAGCTCATAAGAGCTAAACGAAAACCCATAAGGGTCA
1 AACAG-AAGCTCATAAGAGCTAAACGAAAACCCATAAGGGTTA
* * *
55538327 AACAGAAGCTCAAAAGAGCTTAACGGAAACCCATAAGGGTTA
1 AACAGAAGCTCATAAGAGCTAAACGAAAACCCATAAGGGTTA
* * *
55538369 AACAGAAGCTCA-ATAGAGCTAAAC-AGAAACTCATATGAGTTA
1 AACAGAAGCTCATA-AGAGCTAAACGA-AAACCCATAAGGGTTA
* *
55538411 AATAGAAGCTCATGAGAGCTAAACG
1 AACAGAAGCTCATAAGAGCTAAACG
55538436 GAAAGTAAAC
Statistics
Matches: 128, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
41 2 0.02
42 124 0.97
43 2 0.02
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.16
Consensus pattern (42 bp):
AACAGAAGCTCATAAGAGCTAAACGAAAACCCATAAGGGTTA
Found at i:55538393 original size:21 final size:20
Alignment explanation
Indices: 55538326--55538434 Score: 83
Period size: 21 Copynumber: 5.2 Consensus size: 20
55538316 CATAAGGGTC
*
55538326 AAACAGAAGCTCAAAAGAGCT
1 AAACAGAAGCTC-ATAGAGCT
* * * * * *
55538347 TAACGGAAACCCATAAGGGTT
1 AAACAGAAGCTCAT-AGAGCT
55538368 AAACAGAAGCTCAATAGAGCT
1 AAACAGAAGCTC-ATAGAGCT
* *
55538389 AAACAGAAACTCATATGAGTT
1 AAACAGAAGCTCATA-GAGCT
*
55538410 AAATAGAAGCTCATGAGAGCT
1 AAACAGAAGCTCAT-AGAGCT
55538431 AAAC
1 AAAC
55538435 GGAAAGTAAA
Statistics
Matches: 65, Mismatches: 19, Indels: 8
0.71 0.21 0.09
Matches are distributed among these distances:
20 4 0.06
21 58 0.89
22 3 0.05
ACGTcount: A:0.47, C:0.17, G:0.19, T:0.17
Consensus pattern (20 bp):
AAACAGAAGCTCATAGAGCT
Found at i:55540002 original size:51 final size:50
Alignment explanation
Indices: 55539885--55540201 Score: 458
Period size: 51 Copynumber: 6.3 Consensus size: 50
55539875 CTTGCGTATG
*
55539885 ATCACTT-ATCACTTGTCCCTGATCAGATAAGTGTAGCTAAGCTACCACTT
1 ATCACTTGA-CACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTT
* * *
55539935 ATCACTTGCCATTTGTCACTGATCAGATAAGTGTAGCTGAAGCTATCACTT
1 ATCACTTGACACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTT
55539986 ATCACTTGACACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTT
1 ATCACTTGACACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTT
* * *
55540037 GTCACTTGTCACTTGTCACTGATCAAATAAGTGTAGCTAAGCTACCACTT
1 ATCACTTGACACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTT
55540087 ATCACTT-ATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
1 ATCACTTGA-CACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTT
* * * *
55540138 ATCACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGGTACCATTT
1 ATCACTTGACACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTT
*
55540189 ATCACTTGTCACT
1 ATCACTTGACACT
55540202 GATCAAAAGT
Statistics
Matches: 245, Mismatches: 17, Indels: 9
0.90 0.06 0.03
Matches are distributed among these distances:
50 80 0.33
51 165 0.67
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.32
Consensus pattern (50 bp):
ATCACTTGACACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTT
Found at i:55540044 original size:7 final size:7
Alignment explanation
Indices: 55540032--55540056 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
55540022 CTGAAGCTAC
55540032 CACTTGT
1 CACTTGT
55540039 CACTTGT
1 CACTTGT
55540046 CACTTGT
1 CACTTGT
55540053 CACT
1 CACT
55540057 GATCAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.32, G:0.12, T:0.40
Consensus pattern (7 bp):
CACTTGT
Found at i:55540069 original size:152 final size:152
Alignment explanation
Indices: 55539885--55540201 Score: 508
Period size: 152 Copynumber: 2.1 Consensus size: 152
55539875 CTTGCGTATG
* * * * *
55539885 ATCACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTGCCATTTG
1 ATCACTTGTCACTTGTCACTGATCAAATAAGTGTAGCTAAGCTACCACTTATCACTTACCACTTG
* * *
55539950 TCACTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTGACACTTGTCACTGATCAGATA
66 TCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGACACTTGTCACTAATCAGATA
*
55540015 AGTGTAGCTGAAGCTACCACTT
131 AGTGTAGCTAAAGCTACCACTT
* *
55540037 GTCACTTGTCACTTGTCACTGATCAAATAAGTGTAGCTAAGCTACCACTTATCACTTATCACTTG
1 ATCACTTGTCACTTGTCACTGATCAAATAAGTGTAGCTAAGCTACCACTTATCACTTACCACTTG
*
55540102 TCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCACTTGTCACTAATCAGATA
66 TCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGACACTTGTCACTAATCAGATA
* *
55540167 AGTGTAGCTAAAGGTACCATTT
131 AGTGTAGCTAAAGCTACCACTT
55540189 ATCACTTGTCACT
1 ATCACTTGTCACT
55540202 GATCAAAAGT
Statistics
Matches: 150, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
152 150 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.32
Consensus pattern (152 bp):
ATCACTTGTCACTTGTCACTGATCAAATAAGTGTAGCTAAGCTACCACTTATCACTTACCACTTG
TCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGACACTTGTCACTAATCAGATA
AGTGTAGCTAAAGCTACCACTT
Found at i:55540079 original size:101 final size:101
Alignment explanation
Indices: 55539885--55540201 Score: 494
Period size: 101 Copynumber: 3.1 Consensus size: 101
55539875 CTTGCGTATG
* * *
55539885 ATCACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTGCCATTTG
1 ATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTGTCACTTG
* *
55539950 TCACTGATCAGATAAGTGTAGCTGAAGCTATCACTT
66 TCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
*
55539986 ATCACTTGA-CACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACCACTTGTCACTTGTCACT
1 ATCACTT-ATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTTGTCACT
*
55540050 TGTCACTGATCAAATAAGTGTAGCT-AAGCTACCACTT
64 TGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
55540087 ATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCACTT
1 ATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTTGTCACTT
* * *
55540152 GTCACTAATCAGATAAGTGTAGCTAAAGGTACCATTT
65 GTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
*
55540189 ATCACTTGTCACT
1 ATCACTTATCACT
55540202 GATCAAAAGT
Statistics
Matches: 199, Mismatches: 13, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
100 1 0.01
101 129 0.65
102 69 0.35
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.32
Consensus pattern (101 bp):
ATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTGTCACTTG
TCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
Found at i:55546063 original size:22 final size:22
Alignment explanation
Indices: 55546017--55546084 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 22
55546007 GTTAATAATT
*
55546017 AAATAAATATTTTAAAATCTAA
1 AAATAAATATATTAAAATCTAA
* *
55546039 AAATAAATATATTATATTCTTAA
1 AAATAAATATATTAAAATC-TAA
* * *
55546062 AAGTAAAAATA-TAAAAACTAA
1 AAATAAATATATTAAAATCTAA
55546083 AA
1 AA
55546085 TTTAAATTTA
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
21 5 0.14
22 20 0.54
23 12 0.32
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.32
Consensus pattern (22 bp):
AAATAAATATATTAAAATCTAA
Found at i:55548101 original size:41 final size:41
Alignment explanation
Indices: 55548042--55548121 Score: 108
Period size: 41 Copynumber: 2.0 Consensus size: 41
55548032 CACATGGTCG
* * *
55548042 TGTGGTAGGTCATGTGGGTCACGCAGT-CATGTGGTAGACCA
1 TGTGGTAGGCCATATGGGTCACAC-GTCCATGTGGTAGACCA
*
55548083 TGTGGTAGGCCGTATGGGTCACACGTCCATGTGGTAGAC
1 TGTGGTAGGCCATATGGGTCACACGTCCATGTGGTAGAC
55548122 TGTATAGGTC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 2 0.06
41 32 0.94
ACGTcount: A:0.19, C:0.19, G:0.36, T:0.26
Consensus pattern (41 bp):
TGTGGTAGGCCATATGGGTCACACGTCCATGTGGTAGACCA
Found at i:55548112 original size:29 final size:29
Alignment explanation
Indices: 55548079--55548157 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
55548069 CATGTGGTAG
*
55548079 ACCATGTGGTAGGCCGTATGGGTCACACG
1 ACCATGTGGTAGGCCGTATGGGTCACACA
* * * *
55548108 TCCATGTGGTAGACTGTATAGGTCACACA
1 ACCATGTGGTAGGCCGTATGGGTCACACA
55548137 ACTC-TGTGGTAGGCCGTATGG
1 AC-CATGTGGTAGGCCGTATGG
55548158 TGGCCCTTGT
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
29 39 0.98
30 1 0.03
ACGTcount: A:0.22, C:0.22, G:0.32, T:0.25
Consensus pattern (29 bp):
ACCATGTGGTAGGCCGTATGGGTCACACA
Found at i:55548710 original size:48 final size:46
Alignment explanation
Indices: 55548607--55548720 Score: 126
Period size: 48 Copynumber: 2.5 Consensus size: 46
55548597 TAATCTGCCT
* *
55548607 TATTTGGTGGTTTAACCATATATCTGTTCTGGTAACTTTATTGCGA
1 TATTTGGTGGCTTGACCATATATCTGTTCTGGTAACTTTATTGCGA
* * *
55548653 T-TATAGTGGCTTGACCATCCATATCTGATTCTGGT-AGTTTATTTGC-A
1 TATTTGGTGGCTTGACCAT--ATATCTG-TTCTGGTAACTTTA-TTGCGA
55548700 TATTTGGTGGCTTGACCATAT
1 TATTTGGTGGCTTGACCATAT
55548721 TTATTTGATT
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
45 13 0.23
46 3 0.05
47 14 0.25
48 26 0.46
ACGTcount: A:0.21, C:0.15, G:0.20, T:0.44
Consensus pattern (46 bp):
TATTTGGTGGCTTGACCATATATCTGTTCTGGTAACTTTATTGCGA
Found at i:55548901 original size:12 final size:12
Alignment explanation
Indices: 55548884--55548913 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
55548874 ATGGGGTGGG
*
55548884 ATCTGTTTCTGC
1 ATCTGTGTCTGC
55548896 ATCTGTGTCTGC
1 ATCTGTGTCTGC
55548908 ATCTGT
1 ATCTGT
55548914 ATTTACATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.23, G:0.20, T:0.47
Consensus pattern (12 bp):
ATCTGTGTCTGC
Found at i:55548944 original size:18 final size:18
Alignment explanation
Indices: 55548935--55548969 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
55548925 AATCTTCATT
*
55548935 CGTATCTGAAACTGTATC
1 CGTATCTGAATCTGTATC
55548953 CGTATCTGAATCTGTAT
1 CGTATCTGAATCTGTAT
55548970 ATTATATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (18 bp):
CGTATCTGAATCTGTATC
Found at i:55549600 original size:15 final size:15
Alignment explanation
Indices: 55549559--55549605 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
55549549 CATGCATAAC
55549559 TTGCTTTATACTTTAG
1 TTGCTTT-TACTTTAG
* *
55549575 TTAAC-TATACTTTAG
1 TT-GCTTTTACTTTAG
55549590 TTGCTTTTACTTTAG
1 TTGCTTTTACTTTAG
55549605 T
1 T
55549606 ACTTTAGTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
14 1 0.04
15 20 0.80
16 3 0.12
17 1 0.04
ACGTcount: A:0.21, C:0.13, G:0.11, T:0.55
Consensus pattern (15 bp):
TTGCTTTTACTTTAG
Found at i:55550567 original size:23 final size:23
Alignment explanation
Indices: 55550519--55550569 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
55550509 AAGTTTATTA
* * *
55550519 GAAAAATTGTTTGGTTTGGGAGT
1 GAAATATTGTCTGGTTTGGGACT
55550542 GAAATATTGTCTGGATTT-GGACT
1 GAAATATTGTCTGG-TTTGGGACT
55550565 GAAAT
1 GAAAT
55550570 TAGAGTTGCG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 21 0.88
24 3 0.12
ACGTcount: A:0.29, C:0.04, G:0.29, T:0.37
Consensus pattern (23 bp):
GAAATATTGTCTGGTTTGGGACT
Found at i:55551853 original size:29 final size:28
Alignment explanation
Indices: 55551818--55551943 Score: 126
Period size: 29 Copynumber: 4.4 Consensus size: 28
55551808 GTCATATGGT
*
55551818 CATGTGGTAGCTCGTGTGGGTTACACAAC
1 CATGTGGTAGC-CGTGTGGGTCACACAAC
* *
55551847 CGTGTGGTAAGCCGTGTGGGTTACACAAC
1 CATGTGGT-AGCCGTGTGGGTCACACAAC
* * *
55551876 TATATGGTAGCCTGTGTGGGTCACACGAC
1 CATGTGGTAGCC-GTGTGGGTCACACAAC
* * *
55551905 CATATGGTAGACTGTATGGGTCACACAAC
1 CATGTGGTAG-CCGTGTGGGTCACACAAC
*
55551934 AATGTGGTAG
1 CATGTGGTAG
55551944 GTCATATGAC
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
28 4 0.05
29 74 0.90
30 4 0.05
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (28 bp):
CATGTGGTAGCCGTGTGGGTCACACAAC
Found at i:55553031 original size:26 final size:25
Alignment explanation
Indices: 55552969--55553051 Score: 82
Period size: 26 Copynumber: 3.3 Consensus size: 25
55552959 TGGTTCCTGC
* *
55552969 GAGCTTTCTG-TTAATA-GCTCTTCG
1 GAGCTTCCTGATTAA-AGGCTCTTTG
*
55552993 GAGCAT-CTCGATTAAAGGCTCTTTG
1 GAGCTTCCT-GATTAAAGGCTCTTTG
*
55553018 TGAGCTTCCTGATTAATGGCTCTTTG
1 -GAGCTTCCTGATTAAAGGCTCTTTG
55553044 GAGCTTCC
1 GAGCTTCC
55553052 CGATATTGGC
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
23 2 0.04
24 7 0.14
25 19 0.38
26 20 0.40
27 2 0.04
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (25 bp):
GAGCTTCCTGATTAAAGGCTCTTTG
Found at i:55553235 original size:25 final size:27
Alignment explanation
Indices: 55553191--55553256 Score: 73
Period size: 25 Copynumber: 2.5 Consensus size: 27
55553181 AGCCCGGATA
* *
55553191 AGCTTCCAGTTACATAGCTC-ACA-AG
1 AGCTTCCCGTTATATAGCTCGACAGAG
* *
55553216 AGCTTCCCGTTATATGGCTCGAGAGAG
1 AGCTTCCCGTTATATAGCTCGACAGAG
55553243 AGCTTCCCGATTAT
1 AGCTTCCCG-TTAT
55553257 GTGCTCTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
25 17 0.50
26 2 0.06
27 11 0.32
28 4 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (27 bp):
AGCTTCCCGTTATATAGCTCGACAGAG
Found at i:55557118 original size:21 final size:22
Alignment explanation
Indices: 55557094--55557137 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
55557084 TAAACATGAT
*
55557094 AATAGCAATAACAATA-TAAAA
1 AATAACAATAACAATAGTAAAA
* *
55557115 AATAATAATAATAATAGTAAAA
1 AATAACAATAACAATAGTAAAA
55557137 A
1 A
55557138 TAATGATAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.23
Consensus pattern (22 bp):
AATAACAATAACAATAGTAAAA
Found at i:55557877 original size:16 final size:17
Alignment explanation
Indices: 55557846--55557880 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
55557836 AAAATAAAGA
55557846 AAAAAACAAAACAAAAC
1 AAAAAACAAAACAAAAC
*
55557863 AAAAAATAAAA-AAAAC
1 AAAAAACAAAACAAAAC
55557879 AA
1 AA
55557881 CCTTTGAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.86, C:0.11, G:0.00, T:0.03
Consensus pattern (17 bp):
AAAAAACAAAACAAAAC
Found at i:55558695 original size:129 final size:129
Alignment explanation
Indices: 55558553--55558934 Score: 480
Period size: 129 Copynumber: 3.0 Consensus size: 129
55558543 AAGTCTGATG
* * ** ** *
55558553 CGATCTGCTCTACTACAACTTCAGAGAGAAAAGATCCATCATTTTGATCCGCT-TCACTGCAACT
1 CGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCT-ACTGCAACT
* * ** *
55558617 TTAGAAAGATAGGATTGATTTCTTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTGGATA
65 TCAGAGAGATAGGATTGATTTCTTCTGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTGGATA
* * *
55558682 CGATCTGCTCTACTGCAATTTCAGAGAGATAAGGTCTGTGGTTTTAATCTGCTCTACTGCAACTT
1 CGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCTACTGCAACTT
* * * * * * *
55558747 CAGAGAGATAGGATTGTTTTTTTCTGTTTGCCCCACTGTAACTTCAGGGAGATAAGACTGGATG
66 CAGAGAGATAGGATTGATTTCTTCTGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTGGATA
* *
55558811 CGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCACTCTACTGCAACTT
1 CGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCTACTGCAACTT
* ** *
55558876 CAGGGAGATAGGATTGGCTTCTTCTGTCTGCTCCACTGCAACTTCA-AGGAGATGAGACT
66 CAGAGAGATAGGATTGATTTCTTCTGTCTGCTCCACTGCAACTTCAGA-GAGATAAGACT
55558935 TTTCGTTTTC
Statistics
Matches: 215, Mismatches: 36, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
129 214 1.00
130 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (129 bp):
CGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCTACTGCAACTT
CAGAGAGATAGGATTGATTTCTTCTGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTGGATA
Found at i:55558914 original size:44 final size:42
Alignment explanation
Indices: 55558607--55558921 Score: 183
Period size: 44 Copynumber: 7.3 Consensus size: 42
55558597 TGATCCGCTT
* * * *
55558607 CACTGCAACTTTAGAAAGATAGGATTGATTTCTTCAATCTGCTC
1 CACTGCAACTTCAGAGAGATAGGATTG-GTT-TTCAGTCTGCTC
* * *
55558651 CACTGCAACTTCAGAGAGATAAGATTGG-ATAC-GATCTGCTC
1 CACTGCAACTTCAGAGAGATAGGATTGGTTTTCAG-TCTGCTC
* * * *
55558692 TACTGCAATTTCAGAGAGATAAGGTCTGTGGTTTT-AATCTGCTC
1 CACTGCAACTTCAGAGAGAT-AGG-AT-TGGTTTTCAGTCTGCTC
* * * * *
55558736 TACTGCAACTTCAGAGAGATAGGATTGTTTTTTTCTGTTTGCCC
1 CACTGCAACTTCAGAGAGATAGGATTG--GTTTTCAGTCTGCTC
* * * * * * *
55558780 CACTGTAACTTCAGGGAGATAAGACTGG-ATGC-GATCTACTC
1 CACTGCAACTTCAGAGAGATAGGATTGGTTTTCAG-TCTGCTC
* * * **
55558821 TACTGCAACTTCAGAGAGATAAGATCTGTGGTTTT-AATCCACTC
1 CACTGCAACTTCAGAGAGATAGGA--T-TGGTTTTCAGTCTGCTC
* * *
55558865 TACTGCAACTTCAGGGAGATAGGATTGGCTTCTTCTGTCTGCTC
1 CACTGCAACTTCAGAGAGATAGGATTGG-TT-TTCAGTCTGCTC
55558909 CACTGCAACTTCA
1 CACTGCAACTTCA
55558922 AGGAGATGAG
Statistics
Matches: 206, Mismatches: 47, Indels: 36
0.71 0.16 0.12
Matches are distributed among these distances:
40 1 0.00
41 59 0.29
42 6 0.03
43 10 0.05
44 128 0.62
45 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (42 bp):
CACTGCAACTTCAGAGAGATAGGATTGGTTTTCAGTCTGCTC
Found at i:55559068 original size:50 final size:50
Alignment explanation
Indices: 55558953--55559793 Score: 590
Period size: 50 Copynumber: 16.8 Consensus size: 50
55558943 TCAATCTGTT
* * * * * ** * *
55558953 CGCCAGGGAAGTAAGATTCACTGTCGTGGCTTCAATCTTTTTTACTGTAA
1 CGCCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAACTGCAC
* * * * * * * *
55559003 TGTCGGGAAAATAAGATTTGCCGTTGTAGCTTGAATCTGTTCCACTGCAC
1 CGCCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAACTGCAC
* * * * * * *
55559053 CGCCAGGGAAGTAAGATTCTCTGTTGTGGCTTCAATCTTTTTAATTGCAA
1 CGCCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAACTGCAC
* * * * * * * *
55559103 TGTCGGGGAAGCAAGATTCACCGTTGTAGTTTCAATCTGTTCCACTACAC
1 CGCCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAACTGCAC
* ** * * * * *
55559153 CGCCAGGGAAGTAAGATTCATCGTTGTGGCTTTAATCTTTTTAATTGCAA
1 CGCCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAACTGCAC
* * * * * * *
55559203 TGTCGGGGAAGCAAGATTTGCCGTTGTAGCTTCAATCTGTTCTACTTCAC
1 CGCCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAACTGCAC
* * * * * * *
55559253 CACCTGAGAAAGTAAGATTCACTGTTGTAGCTTCAATCTTTTCAACCGCAA
1 CGCC-GGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAACTGCAC
*** * * *
55559304 TATCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCAC
1 CGCCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAACTGCAC
* * * * *
55559354 CGCCTGGGAAAGTAAAATTCGCTGTT-TAGCTTCAATATTTTCAACTGCAA
1 CGCC-GGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAACTGCAC
* * * * * *
55559404 TGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAAT-TTGTTCTATTGCAT
1 CGCCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTT-TTCAACTGCAC
* * * * *
55559454 CGCCAGGGAAGTAAGATTCGCCATTGTGGCTTCAATCTTTTGAATTGCTA-
1 CGCCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAACTGC-AC
* * * * * *
55559504 TGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCAC
1 CGCCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAACTGCAC
* * ** * *
55559554 CACCTGGGAAAGTAAGATTCGTTGTTGTAGCTTTAATCTTTTCAACTGCAA
1 CGCC-GGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAACTGCAC
* * * * * * * * *
55559605 TGTCGGGTAAGCAAGATTCGTCGTTGTAACTTCAATCTGTTCCATTGCAC
1 CGCCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAACTGCAC
* * * *
55559655 CGCCTGAGAAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTCAACTGCAA
1 CGCC-GGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAACTGCAC
* * * * * * *
55559706 TGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGTAC
1 CGCCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAACTGCAC
* * * * *
55559756 CGCCAGGGAAGTAAGAATCACTGTTGTAACTTCAATCT
1 CGCCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT
55559794 ATTCTACTAC
Statistics
Matches: 590, Mismatches: 192, Indels: 18
0.74 0.24 0.02
Matches are distributed among these distances:
49 20 0.03
50 437 0.74
51 133 0.23
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (50 bp):
CGCCGGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTCAACTGCAC
Found at i:55559127 original size:100 final size:100
Alignment explanation
Indices: 55558953--55559793 Score: 1056
Period size: 100 Copynumber: 8.4 Consensus size: 100
55558943 TCAATCTGTT
* * ** * * **
55558953 CGCCAGGGAAGTAAGATTCACTGTCGTGGCTTCAATCTTTTTTACTGTAATGTCGGGAAAATAAG
1 CGCCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAAG
* *
55559018 ATTTGCCGTTGTAGCTTGAATCTGTTCCACTGCAC
66 ATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
* * * *
55559053 CGCCAGGGAAGTAAGATTCTCTGTTGTGGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAG
1 CGCCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAAG
* * *
55559118 ATTCACCGTTGTAGTTTCAATCTGTTCCACTACAC
66 ATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
* * * *
55559153 CGCCAGGGAAGTAAGATTCA-TCGTTGTGGCTTTAATCTTTTTAATTGCAATGTCGGGGAAGCAA
1 CGCCAGGGAAGTAAGATTCACT-GTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAA
* * *
55559217 GATTTGCCGTTGTAGCTTCAATCTGTTCTACTTCAC
65 GATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
* * * * *
55559253 CACCTGAGAAAGTAAGATTCACTGTTGTAGCTTCAATCTTTTCAACCGCAATATCGGGGAAGCAA
1 CGCCAG-GGAAGTAAGATTCACTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAA
*
55559318 GATTCGCCGTTGTAGCTTCAATCTATTCCACTGCAC
65 GATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
* * * *
55559354 CGCCTGGGAAAGTAAAATTCGCTGTT-TAGCTTCAATATTTTCAACTGCAATGTCGGGGAAGCAA
1 CGCCAGGG-AAGTAAGATTCACTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAA
* * * *
55559418 GATTCGCCGTTGTAGCTTCAATTTGTTCTATTGCAT
65 GATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
* ** * * * *
55559454 CGCCAGGGAAGTAAGATTCGCCATTGTGGCTTCAATCTTTTGAATTGCTATGTCGGGGAAGCAAG
1 CGCCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAAG
*
55559519 ATTCACCGTTGTAGCTTCAATCTGTTCCACTGCAC
66 ATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
* * ** * *
55559554 CACCTGGGAAAGTAAGATTCGTTGTTGTAGCTTTAATCTTTTCAACTGCAATGTCGGGTAAGCAA
1 CGCCAGGG-AAGTAAGATTCACTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAA
* * *
55559619 GATTCGTCGTTGTAACTTCAATCTGTTCCATTGCAC
65 GATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
* * *
55559655 CGCCTGAGAAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAA
1 CGCCAG-GGAAGTAAGATTCACTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAA
* * *
55559720 GATTCACCGTTGTAGCTTCAATCTATTCCACTGTAC
65 GATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
* *
55559756 CGCCAGGGAAGTAAGAATCACTGTTGTAACTTCAATCT
1 CGCCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCT
55559794 ATTCTACTAC
Statistics
Matches: 644, Mismatches: 90, Indels: 14
0.86 0.12 0.02
Matches are distributed among these distances:
99 15 0.02
100 354 0.55
101 273 0.42
102 2 0.00
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (100 bp):
CGCCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGGAAGCAAG
ATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAC
Found at i:55559509 original size:301 final size:302
Alignment explanation
Indices: 55558961--55559776 Score: 1177
Period size: 301 Copynumber: 2.7 Consensus size: 302
55558951 TTCGCCAGGG
* * ** * ** *
55558961 AAGTAAGATTCACTGTCGTGGCTTCAATCTTTTTTACTGTAATGTCGGGAAAATAAGATTTGCCG
1 AAGTAAGATTCACTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGAAAGCAAGATTCGCCG
* * * *
55559026 TTGTAGCTTGAATCTGTTCCACTGCACCGCCAGGG-AAGTAAGATTCTCTGTTGTGGCTTCAATC
66 TTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGGAAAGTAAGATTCGCTGTTGTAGCTTCAATC
* * * *
55559090 TTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGTTTCAATCTGTTCCACTACACCG
131 TTTTCAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCG
* * * *
55559155 CCAGGGAAGTAAGATTCATCGTTGTGGCTTTAATCTTTTTAATTGCAATGTCGGGGAAGCAAGAT
196 CCAGGGAAGTAAGATTCACCATTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGCAAGAT
** * *
55559220 TTGCCGTTGTAGCTTCAATCTGTTCTACTTCACCACCTGAGA
261 TCACCGTTGTAGCTTCAATCTGTTCCACTGCACCACCTGAGA
* * *
55559262 AAGTAAGATTCACTGTTGTAGCTTCAATCTTTTCAACCGCAATATCGGGGAAGCAAGATTCGCCG
1 AAGTAAGATTCACTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGAAAGCAAGATTCGCCG
* * *
55559327 TTGTAGCTTCAATCTATTCCACTGCACCGCCTGGGAAAGTAAAATTCGCTGTT-TAGCTTCAATA
66 TTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGGAAAGTAAGATTCGCTGTTGTAGCTTCAATC
* * * * *
55559391 TTTTCAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATTTGTTCTATTGCATCG
131 TTTTCAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCG
* *
55559456 CCAGGGAAGTAAGATTCGCCATTGTGGCTTCAATCTTTTGAATTGCTATGTCGGGGAAGCAAGAT
196 CCAGGGAAGTAAGATTCACCATTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGCAAGAT
*
55559521 TCACCGTTGTAGCTTCAATCTGTTCCACTGCACCACCTGGGA
261 TCACCGTTGTAGCTTCAATCTGTTCCACTGCACCACCTGAGA
** * * *
55559563 AAGTAAGATTCGTTGTTGTAGCTTTAATCTTTTCAACTGCAATGTCGGGTAAGCAAGATTCGTCG
1 AAGTAAGATTCACTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGAAAGCAAGATTCGCCG
* * *
55559628 TTGTAACTTCAATCTGTTCCATTGCACCGCCTGAGAAAGTAAGATTCGCTGTTGTAGCTTCAATC
66 TTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGGAAAGTAAGATTCGCTGTTGTAGCTTCAATC
* *
55559693 TTTTCAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGTACCG
131 TTTTCAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCG
*
55559758 CCAGGGAAGTAAGAATCAC
196 CCAGGGAAGTAAGATTCAC
55559777 TGTTGTAACT
Statistics
Matches: 453, Mismatches: 60, Indels: 3
0.88 0.12 0.01
Matches are distributed among these distances:
301 353 0.78
302 100 0.22
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (302 bp):
AAGTAAGATTCACTGTTGTAGCTTCAATCTTTTCAACTGCAATGTCGGGAAAGCAAGATTCGCCG
TTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGGAAAGTAAGATTCGCTGTTGTAGCTTCAATC
TTTTCAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCG
CCAGGGAAGTAAGATTCACCATTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGCAAGAT
TCACCGTTGTAGCTTCAATCTGTTCCACTGCACCACCTGAGA
Found at i:55559812 original size:50 final size:49
Alignment explanation
Indices: 55559711--55559814 Score: 120
Period size: 50 Copynumber: 2.1 Consensus size: 49
55559701 TGCAATGTCG
* * *
55559711 GGGAAGCAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGTACCGCCA
1 GGGAAGCAAGAATCACCGTTGTAACTTCAATCTATTCCAC-GTACAGCCA
* * *
55559761 GGGAAGTAAGAATCACTGTTGTAACTTCAATCTATTCTAC-TACAGAACCA
1 GGGAAGCAAGAATCACCGTTGTAACTTCAATCTATTCCACGTACAG--CCA
55559811 GGGA
1 GGGA
55559815 TATGAGATCT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
48 4 0.09
50 42 0.91
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (49 bp):
GGGAAGCAAGAATCACCGTTGTAACTTCAATCTATTCCACGTACAGCCA
Found at i:55559971 original size:132 final size:132
Alignment explanation
Indices: 55559820--55560139 Score: 478
Period size: 132 Copynumber: 2.4 Consensus size: 132
55559810 AGGGATATGA
*
55559820 GATCTACAATCTTCAACCTACTCCACTGTTGCTAAGGGAGATAGGACTAATGGCTTAAATCTACT
1 GATCTACAATCTTCGACCTACTCCACTGTTGCTAAGGGAGATAGGACTAATGGCTTAAATCTACT
* *
55559885 TCCCTACTACCTTAGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTACTTAGGGAGAC
66 TCCCTACTACCTTAGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACAACCTAGGGAGAC
55559950 AG
131 AG
* * ** * * ** * *
55559952 GATCTACAATTTTCGACCTATTCCACTACTGCTTAGAGAGATAGGACTGGTGGTTTAAATCTGCT
1 GATCTACAATCTTCGACCTACTCCACTGTTGCTAAGGGAGATAGGACTAATGGCTTAAATCTACT
* *
55560017 TCCCTACTACCTTGGGAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACAACCTAGGGAGAC
66 TCCCTACTACCTTAGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACAACCTAGGGAGAC
55560082 AG
131 AG
* * *
55560084 GATCTACAATCTTCGACCTACTCCACTGTTGCTCAGGGAAATAGGACTAATTGCTT
1 GATCTACAATCTTCGACCTACTCCACTGTTGCTAAGGGAGATAGGACTAATGGCTT
55560140 CACCGATCTG
Statistics
Matches: 162, Mismatches: 26, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
132 162 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (132 bp):
GATCTACAATCTTCGACCTACTCCACTGTTGCTAAGGGAGATAGGACTAATGGCTTAAATCTACT
TCCCTACTACCTTAGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACAACCTAGGGAGAC
AG
Found at i:55560394 original size:24 final size:23
Alignment explanation
Indices: 55560366--55560422 Score: 80
Period size: 22 Copynumber: 2.5 Consensus size: 23
55560356 CAGATTGCCC
55560366 CCACTGTAATCTTCAAGGTCCAAT
1 CCACTGTAAT-TTCAAGGTCCAAT
* *
55560390 CCACTGTAA-TTCTATGTCCAAT
1 CCACTGTAATTTCAAGGTCCAAT
55560412 CCACTGTAATT
1 CCACTGTAATT
55560423 GAACCATCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
22 20 0.67
23 1 0.03
24 9 0.30
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (23 bp):
CCACTGTAATTTCAAGGTCCAAT
Found at i:55561362 original size:14 final size:15
Alignment explanation
Indices: 55561338--55561379 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
55561328 GACCTCTCCT
*
55561338 TTTCTTTTTCTTTTC
1 TTTCTTCTTCTTTTC
55561353 -TTCTTCTTC-TTTC
1 TTTCTTCTTCTTTTC
*
55561366 TTTTTTCTTCTTTT
1 TTTCTTCTTCTTTT
55561380 TCCTTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 4 0.17
14 16 0.70
15 3 0.13
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTCTTCTTCTTTTC
Found at i:55561364 original size:20 final size:20
Alignment explanation
Indices: 55561339--55561377 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
55561329 ACCTCTCCTT
55561339 TTCTTT-TTCTTTTCTTCTTC
1 TTCTTTCTT-TTTTCTTCTTC
55561359 TTCTTTCTTTTTTCTTCTT
1 TTCTTTCTTTTTTCTTCTT
55561378 TTTCCTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (20 bp):
TTCTTTCTTTTTTCTTCTTC
Found at i:55561373 original size:17 final size:16
Alignment explanation
Indices: 55561339--55561398 Score: 77
Period size: 17 Copynumber: 3.6 Consensus size: 16
55561329 ACCTCTCCTT
55561339 TTCTTTTTCTTTTCTTC
1 TTCTTTTTCTTTT-TTC
55561356 TTCTTCTTTCTTTTTTC
1 TTCTT-TTTCTTTTTTC
*
55561373 TTCTTTTTCCTTATTT-
1 TTCTTTTT-CTTTTTTC
55561389 TTCTTTTTCT
1 TTCTTTTTCT
55561399 CTCAATTTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
15 2 0.05
16 11 0.28
17 19 0.47
18 8 0.20
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.77
Consensus pattern (16 bp):
TTCTTTTTCTTTTTTC
Found at i:55561389 original size:20 final size:20
Alignment explanation
Indices: 55561348--55561390 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
55561338 TTTCTTTTTC
* *
55561348 TTTTCTTCTTCTTCTTTCTT
1 TTTTCTTCTTCTTCCTTATT
*
55561368 TTTTCTTCTTTTTCCTTATT
1 TTTTCTTCTTCTTCCTTATT
55561388 TTT
1 TTT
55561391 CTTTTTCTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTCTTCTTCTTCCTTATT
Found at i:55569991 original size:5 final size:5
Alignment explanation
Indices: 55569981--55570019 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
55569971 GCCTAAGATG
* *
55569981 TGAAT TGAAT TGAAT TGAAT ATGAAT TGTAT TAAAT TGA
1 TGAAT TGAAT TGAAT TGAAT -TGAAT TGAAT TGAAT TGA
55570020 GTTAAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (5 bp):
TGAAT
Found at i:55575300 original size:2 final size:2
Alignment explanation
Indices: 55575293--55575374 Score: 155
Period size: 2 Copynumber: 41.0 Consensus size: 2
55575283 GGAACTCAAG
*
55575293 GA GA GA GA GA GA GA CA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
55575335 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
55575375 ATAGATAATG
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
2 78 1.00
ACGTcount: A:0.50, C:0.01, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Found at i:55581569 original size:23 final size:23
Alignment explanation
Indices: 55581538--55581659 Score: 183
Period size: 23 Copynumber: 5.3 Consensus size: 23
55581528 CAACCTGTTG
* *
55581538 ATCAGTGGTAGATTCGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACAT
*
55581561 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
55581584 AACAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
55581607 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
55581630 AAT-AGTGGTAGCTTCGGCTACAT
1 -ATCAGTGGTAGCTTCGGCTACAT
55581653 ATCAGTG
1 ATCAGTG
55581660 TTGCACTTAT
Statistics
Matches: 89, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
22 2 0.02
23 86 0.97
24 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:55581610 original size:46 final size:46
Alignment explanation
Indices: 55581540--55581659 Score: 204
Period size: 46 Copynumber: 2.6 Consensus size: 46
55581530 ACCTGTTGAT
* *
55581540 CAGTGGTAGATTCGGCTACGTTTCAGTGGTAGCTTCGGCTACATAA
1 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTCGGCTACATAA
55581586 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTCGGCTACATAA
1 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTCGGCTACATAA
* *
55581632 TAGTGGTAGCTTCGGCTACATATCAGTG
1 CAGTGGTAGCTTCGGCTACATTTCAGTG
55581660 TTGCACTTAT
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTCGGCTACATAA
Found at i:55587173 original size:13 final size:13
Alignment explanation
Indices: 55587157--55587207 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 13
55587147 TTTAAACCAA
55587157 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
55587170 ACTTCTCAAAAGT
1 ACTTTTCAAAAGC
* *
55587183 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
55587196 ACTTTTCAAAAG
1 ACTTTTCAAAAG
55587208 TAATGAAGAA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.31
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:55587196 original size:26 final size:26
Alignment explanation
Indices: 55587157--55587209 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
55587147 TTTAAACCAA
55587157 ACTTTTCAAAAGCACTTCTCAAAAGT
1 ACTTTTCAAAAGCACTTCTCAAAAGT
* * *
55587183 ACTTTTCCACAGCACTTTTCAAAAGT
1 ACTTTTCAAAAGCACTTCTCAAAAGT
55587209 A
1 A
55587210 ATGAAGAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.25, G:0.08, T:0.32
Consensus pattern (26 bp):
ACTTTTCAAAAGCACTTCTCAAAAGT
Found at i:55590171 original size:16 final size:16
Alignment explanation
Indices: 55590152--55590182 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
55590142 CCTAAACTAA
*
55590152 TAAAGTAATAAATTAT
1 TAAACTAATAAATTAT
55590168 TAAACTAATAAATTA
1 TAAACTAATAAATTA
55590183 ACACATAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.35
Consensus pattern (16 bp):
TAAACTAATAAATTAT
Found at i:55596825 original size:29 final size:29
Alignment explanation
Indices: 55596788--55596843 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
55596778 ATTTATTAGA
**
55596788 GTTAAGTGGGGTGATTTAGGGTTTAAATG
1 GTTAAGTGGAATGATTTAGGGTTTAAATG
* *
55596817 GTTAGGTGGAATGATTTCGGGTTTAAA
1 GTTAAGTGGAATGATTTAGGGTTTAAA
55596844 ATAAATGATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.25, C:0.02, G:0.36, T:0.38
Consensus pattern (29 bp):
GTTAAGTGGAATGATTTAGGGTTTAAATG
Found at i:55599370 original size:23 final size:23
Alignment explanation
Indices: 55599343--55599394 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
55599333 TTCACACCAA
*
55599343 AATTTGGACAGCATA-AATACATC
1 AATTTGGACAGCATATAA-ACAAC
*
55599366 AATTTGGGCAGCATATAAACAAC
1 AATTTGGACAGCATATAAACAAC
55599389 AATTTG
1 AATTTG
55599395 AGCAACATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 24 0.92
24 2 0.08
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (23 bp):
AATTTGGACAGCATATAAACAAC
Found at i:55599455 original size:35 final size:34
Alignment explanation
Indices: 55599396--55599470 Score: 105
Period size: 35 Copynumber: 2.2 Consensus size: 34
55599386 AACAATTTGA
*
55599396 GCAACATTTTACACCAAAACTGGACAGCATATAT
1 GCAACATTTAACACCAAAACTGGACAGCATATAT
* *
55599430 GCAACATTTAAGCATCAAAATTGGACAGCATATAT
1 GCAACATTTAA-CACCAAAACTGGACAGCATATAT
*
55599465 GTAACA
1 GCAACA
55599471 AATTGGGCAG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
34 10 0.28
35 26 0.72
ACGTcount: A:0.43, C:0.20, G:0.13, T:0.24
Consensus pattern (34 bp):
GCAACATTTAACACCAAAACTGGACAGCATATAT
Found at i:55599506 original size:24 final size:24
Alignment explanation
Indices: 55599434--55599644 Score: 169
Period size: 23 Copynumber: 9.0 Consensus size: 24
55599424 ATATATGCAA
55599434 CATTTAAGCATCAAAATTGGACAG
1 CATTTAAGCATCAAAATTGGACAG
* * * * *
55599458 CATATATGTAAC-AAATTGGGCAG
1 CATTTAAGCATCAAAATTGGACAG
* *
55599481 CATTTAAACATCAAAATTGGAAAG
1 CATTTAAGCATCAAAATTGGACAG
* * * * *
55599505 CATATATGTAAC-AAATTGGGCAG
1 CATTTAAGCATCAAAATTGGACAG
*
55599528 CATTTAAGCATCAAAATTGGGCAG
1 CATTTAAGCATCAAAATTGGACAG
* * * * * *
55599552 TATATATGTAAC-AAATTGGGCAG
1 CATTTAAGCATCAAAATTGGACAG
*
55599575 CATTTAAGCATCAAAATTTGACAG
1 CATTTAAGCATCAAAATTGGACAG
* * * * *
55599599 CATATATGTAAC-AAATTGGGCAG
1 CATTTAAGCATCAAAATTGGACAG
55599622 CATTTAAGCATCAAAATTGGACA
1 CATTTAAGCATCAAAATTGGACA
55599645 ACATATATGT
Statistics
Matches: 137, Mismatches: 46, Indels: 8
0.72 0.24 0.04
Matches are distributed among these distances:
23 69 0.50
24 68 0.50
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (24 bp):
CATTTAAGCATCAAAATTGGACAG
Found at i:55599507 original size:47 final size:47
Alignment explanation
Indices: 55599434--55599664 Score: 408
Period size: 47 Copynumber: 4.9 Consensus size: 47
55599424 ATATATGCAA
55599434 CATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGGGCAG
1 CATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGGGCAG
* *
55599481 CATTTAAACATCAAAATTGGAAAGCATATATGTAACAAATTGGGCAG
1 CATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGGGCAG
* *
55599528 CATTTAAGCATCAAAATTGGGCAGTATATATGTAACAAATTGGGCAG
1 CATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGGGCAG
*
55599575 CATTTAAGCATCAAAATTTGACAGCATATATGTAACAAATTGGGCAG
1 CATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGGGCAG
*
55599622 CATTTAAGCATCAAAATTGGACAACATATATGTAACAAATTGG
1 CATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGG
55599665 TTCAACTCAT
Statistics
Matches: 173, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 173 1.00
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.27
Consensus pattern (47 bp):
CATTTAAGCATCAAAATTGGACAGCATATATGTAACAAATTGGGCAG
Found at i:55600582 original size:43 final size:43
Alignment explanation
Indices: 55600514--55600641 Score: 127
Period size: 43 Copynumber: 3.0 Consensus size: 43
55600504 AGCTCGTACA
* **
55600514 ATGCCATCGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCATCGTCCCAGACGTGATCTTACACATAATCACATATCG
*
55600557 ATGCCA-CTGTCCCAGACAG-GATCTTACACATAATCAGATATCG
1 ATGCCATC-GTCCCAGAC-GTGATCTTACACATAATCACATATCG
* * * * *
55600600 ATGCCGA-AGTCTCAGACGTGGTCTTACACAAAAACACATATC
1 ATGCC-ATCGTCCCAGACGTGATCTTACACATAATCACATATC
55600642 AGAATCCTAT
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
42 2 0.03
43 67 0.94
44 2 0.03
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCATCGTCCCAGACGTGATCTTACACATAATCACATATCG
Found at i:55601566 original size:28 final size:28
Alignment explanation
Indices: 55601526--55601582 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
55601516 TATGTTTGTT
55601526 TTTATTATAATAA-CTTTATAATATATTA
1 TTTATTATAATAACCTTTATAAT-TATTA
*
55601554 TTTATTATTATAACCTTTATAATTATTA
1 TTTATTATAATAACCTTTATAATTATTA
55601582 T
1 T
55601583 AAAAACTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 18 0.67
29 9 0.33
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTATTATAATAACCTTTATAATTATTA
Found at i:55601801 original size:14 final size:15
Alignment explanation
Indices: 55601782--55601810 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
55601772 TCACGAAACT
55601782 TTCACACAT-ATAAA
1 TTCACACATAATAAA
55601796 TTCACACATAATAAA
1 TTCACACATAATAAA
55601811 CACAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:55601931 original size:26 final size:26
Alignment explanation
Indices: 55601901--55601955 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
55601891 TATTACACTA
55601901 TCTGTAGATAATGAGGGTTTCAAACT
1 TCTGTAGATAATGAGGGTTTCAAACT
*
55601927 TCTGTAGATAATGAGGGTTTCAAATT
1 TCTGTAGATAATGAGGGTTTCAAACT
55601953 TCT
1 TCT
55601956 CAATCCCCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (26 bp):
TCTGTAGATAATGAGGGTTTCAAACT
Found at i:55603194 original size:18 final size:16
Alignment explanation
Indices: 55603171--55603204 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
55603161 AGTAAAATAT
55603171 AAATTACAAACATAAAAA
1 AAATTA-AAACA-AAAAA
55603189 AAATTAAAACAAAAAA
1 AAATTAAAACAAAAAA
55603205 CTCCAACACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 5 0.31
18 6 0.38
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (16 bp):
AAATTAAAACAAAAAA
Found at i:55603204 original size:17 final size:18
Alignment explanation
Indices: 55603171--55603204 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
55603161 AGTAAAATAT
*
55603171 AAATTACAAACATAAAAA
1 AAATTACAAACAAAAAAA
55603189 AAATTA-AAACAAAAAA
1 AAATTACAAACAAAAAA
55603205 CTCCAACACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (18 bp):
AAATTACAAACAAAAAAA
Found at i:55603319 original size:15 final size:14
Alignment explanation
Indices: 55603282--55603332 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
55603272 ATATAATCTT
*
55603282 AAAAATTA-AATAT
1 AAAAATTATAATAA
*
55603295 AAATATTATAAGTAA
1 AAAAATTATAA-TAA
*
55603310 AAAAATTATAATAT
1 AAAAATTATAATAA
*
55603324 AGAAATTAT
1 AAAAATTAT
55603333 TGTTACAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 7 0.23
14 12 0.39
15 12 0.39
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (14 bp):
AAAAATTATAATAA
Found at i:55604173 original size:2 final size:2
Alignment explanation
Indices: 55604166--55604198 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
55604156 ATTTCAAACT
55604166 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
55604199 CGTATAAGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:55606112 original size:21 final size:21
Alignment explanation
Indices: 55606086--55606141 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
55606076 AATAGCGGTG
*
55606086 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
*
55606107 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
*
55606128 GCAGTGAGATTAGA
1 GCGGTGAGATTAGA
55606142 AACAATGGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.27, C:0.09, G:0.36, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:55608088 original size:13 final size:13
Alignment explanation
Indices: 55608070--55608119 Score: 77
Period size: 13 Copynumber: 4.0 Consensus size: 13
55608060 CAATGACATT
55608070 TATTCAAGCTCAA
1 TATTCAAGCTCAA
*
55608083 TATTCAAG-T-AT
1 TATTCAAGCTCAA
55608094 TATTCAAGCTCAA
1 TATTCAAGCTCAA
55608107 TATTCAAGCTCAA
1 TATTCAAGCTCAA
55608120 GAGGAAACTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
11 9 0.27
12 2 0.06
13 22 0.67
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (13 bp):
TATTCAAGCTCAA
Found at i:55608097 original size:24 final size:24
Alignment explanation
Indices: 55608069--55608114 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
55608059 TCAATGACAT
55608069 TTATTCAAGCTCAATATTCAAGTA
1 TTATTCAAGCTCAATATTCAAGTA
55608093 TTATTCAAGCTCAATATTCAAG
1 TTATTCAAGCTCAATATTCAAG
55608115 CTCAAGAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (24 bp):
TTATTCAAGCTCAATATTCAAGTA
Found at i:55611974 original size:13 final size:13
Alignment explanation
Indices: 55611956--55612005 Score: 77
Period size: 13 Copynumber: 4.0 Consensus size: 13
55611946 AATGACATAT
55611956 TATTCAAGCTCAA
1 TATTCAAGCTCAA
*
55611969 TATTCAAG-T-AT
1 TATTCAAGCTCAA
55611980 TATTCAAGCTCAA
1 TATTCAAGCTCAA
55611993 TATTCAAGCTCAA
1 TATTCAAGCTCAA
55612006 GAGGAAACTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
11 9 0.27
12 2 0.06
13 22 0.67
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (13 bp):
TATTCAAGCTCAA
Found at i:55611985 original size:24 final size:24
Alignment explanation
Indices: 55611953--55612000 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
55611943 TTCAATGACA
55611953 TATTATTCAAGCTCAATATTCAAG
1 TATTATTCAAGCTCAATATTCAAG
55611977 TATTATTCAAGCTCAATATTCAAG
1 TATTATTCAAGCTCAATATTCAAG
55612001 CTCAAGAGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.38
Consensus pattern (24 bp):
TATTATTCAAGCTCAATATTCAAG
Found at i:55613379 original size:32 final size:34
Alignment explanation
Indices: 55613337--55613409 Score: 96
Period size: 32 Copynumber: 2.2 Consensus size: 34
55613327 TTTTGTTATG
* *
55613337 TATTTCATTAATTAA-AACAATACATTTT-AATA
1 TATTTTATTAATTAATAACAATACATTTTAAAAA
**
55613369 TATTTTATTAATTAATATGAATACATTTTAAAAA
1 TATTTTATTAATTAATAACAATACATTTTAAAAA
55613403 TATTTTA
1 TATTTTA
55613410 AAATATATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 14 0.40
33 11 0.31
34 10 0.29
ACGTcount: A:0.45, C:0.05, G:0.01, T:0.48
Consensus pattern (34 bp):
TATTTTATTAATTAATAACAATACATTTTAAAAA
Found at i:55615304 original size:7 final size:7
Alignment explanation
Indices: 55615292--55615320 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
55615282 GTCAAGATTT
55615292 CTAACTA
1 CTAACTA
55615299 CTAACTA
1 CTAACTA
55615306 CTAACTA
1 CTAACTA
55615313 CTAACTA
1 CTAACTA
55615320 C
1 C
55615321 CATAGCTGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.41, C:0.31, G:0.00, T:0.28
Consensus pattern (7 bp):
CTAACTA
Found at i:55619832 original size:14 final size:13
Alignment explanation
Indices: 55619813--55619848 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
55619803 CCCAAAGCAA
55619813 AAAAAAAAAACCAG
1 AAAAAAAAAA-CAG
*
55619827 AAAAAAGAAACAG
1 AAAAAAAAAACAG
55619840 AAAAAAAAA
1 AAAAAAAAA
55619849 TCATAATAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.83, C:0.08, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAACAG
Found at i:55619897 original size:19 final size:19
Alignment explanation
Indices: 55619873--55619911 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
55619863 CATTTTCAGT
55619873 AGGCCCAA-CTCAGCAGGCC
1 AGGCCCAAGC-CAGCAGGCC
55619892 AGGCCCAAGCCAGCAGGCC
1 AGGCCCAAGCCAGCAGGCC
55619911 A
1 A
55619912 CCAGCAGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 18 0.95
20 1 0.05
ACGTcount: A:0.28, C:0.41, G:0.28, T:0.03
Consensus pattern (19 bp):
AGGCCCAAGCCAGCAGGCC
Found at i:55619988 original size:1 final size:1
Alignment explanation
Indices: 55619982--55620053 Score: 54
Period size: 1 Copynumber: 72.0 Consensus size: 1
55619972 AGCCCAGCAG
* * * * * * * * * *
55619982 AAAAAAAAGAAAAGAGAAGAAAAGAAAAAAGAAAAAAAGAAAAAAAGAAAAAAAGAAAAAAAAAG
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
55620047 AAAAAAA
1 AAAAAAA
55620054 GTTTAATTTG
Statistics
Matches: 51, Mismatches: 20, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (1 bp):
A
Found at i:55619994 original size:8 final size:8
Alignment explanation
Indices: 55619983--55620054 Score: 94
Period size: 8 Copynumber: 9.0 Consensus size: 8
55619973 GCCCAGCAGA
55619983 AAAAAAAG
1 AAAAAAAG
*
55619991 -AAAAGAG
1 AAAAAAAG
*
55619998 AAGAAAAG
1 AAAAAAAG
55620006 -AAAAAAG
1 AAAAAAAG
55620013 AAAAAAAG
1 AAAAAAAG
55620021 AAAAAAAG
1 AAAAAAAG
55620029 AAAAAAAG
1 AAAAAAAG
55620037 AAAAAAAAAG
1 --AAAAAAAG
55620047 AAAAAAAG
1 AAAAAAAG
55620055 TTTAATTTGT
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
7 12 0.21
8 36 0.64
10 8 0.14
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:55620006 original size:15 final size:15
Alignment explanation
Indices: 55619983--55620042 Score: 93
Period size: 15 Copynumber: 3.9 Consensus size: 15
55619973 GCCCAGCAGA
*
55619983 AAAAAAAGAAAAGAG
1 AAAAAAAGAAAAAAG
*
55619998 AAGAAAAGAAAAAAG
1 AAAAAAAGAAAAAAG
55620013 AAAAAAAGAAAAAAAG
1 AAAAAAAG-AAAAAAG
55620029 AAAAAAAGAAAAAA
1 AAAAAAAGAAAAAA
55620043 AAAGAAAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
15 26 0.63
16 15 0.37
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAAAAGAAAAAAG
Found at i:55620018 original size:31 final size:32
Alignment explanation
Indices: 55619980--55620052 Score: 96
Period size: 31 Copynumber: 2.3 Consensus size: 32
55619970 TTAGCCCAGC
* *
55619980 AGAAAAAAAAG-AAAAGAGAAGAAAAGAAAAA
1 AGAAAAAAAAGAAAAAAAGAAAAAAAGAAAAA
55620011 AG-AAAAAAAGAAAAAAAGAAAAAAAGAAAAA
1 AGAAAAAAAAGAAAAAAAGAAAAAAAGAAAAA
*
55620042 AAAAGAAAAAA
1 AGAA-AAAAAA
55620053 AGTTTAATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 8 0.22
31 21 0.58
32 1 0.03
33 6 0.17
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (32 bp):
AGAAAAAAAAGAAAAAAAGAAAAAAAGAAAAA
Found at i:55620050 original size:15 final size:14
Alignment explanation
Indices: 55619982--55620053 Score: 76
Period size: 15 Copynumber: 5.1 Consensus size: 14
55619972 AGCCCAGCAG
55619982 AAAAAAAAGAAAAGA
1 AAAAAAAAGAAAA-A
* *
55619997 GAAGAAAAGAAAAA
1 AAAAAAAAGAAAAA
55620011 AGAAAAAAAG-AAAA
1 A-AAAAAAAGAAAAA
* *
55620025 AAAGAAAA-AAAGA
1 AAAAAAAAGAAAAA
55620038 AAAAAAAAGAAAAA
1 AAAAAAAAGAAAAA
55620052 AA
1 AA
55620054 GTTTAATTTG
Statistics
Matches: 46, Mismatches: 8, Indels: 7
0.75 0.13 0.11
Matches are distributed among these distances:
13 16 0.35
14 12 0.26
15 18 0.39
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (14 bp):
AAAAAAAAGAAAAA
Found at i:55620704 original size:71 final size:69
Alignment explanation
Indices: 55620598--55621092 Score: 263
Period size: 71 Copynumber: 7.0 Consensus size: 69
55620588 AAATCTTTCT
* *** * *
55620598 GTGTTTCAAAAATCTTCGT-TTTTTTTAAATTTCGGTG-TTTCAAAAATTTCCGCGTTTCCAAAA
1 GTGTTTAAAAAAT-TTCGTGTTTTCAAAAATTTCGGTGTTTTCAAAAATTTCCGTGTTTCAAAAA
55620661 ATTCA
65 ATTCA
* * *
55620666 GGTGATTTAAAAAATCTTCGTGTTTTCAAAAACTTCGGTG-TTTC-AAAATTTTCATGTTTTCAA
1 -GTG-TTTAAAAAAT-TTCGTGTTTTCAAAAATTTCGGTGTTTTCAAAAATTTCCGTG-TTTC-A
*
55620729 AAAAATTCCC
61 AAAAATT-CA
* * *
55620739 GTGTTTTAAAAATTTCCGTGTTTTCAAAAATTTTC-GTGTTTTCAAAAACTCCCGTGTTTCAAAA
1 GTGTTTAAAAAATTT-CGTGTTTTCAAAAA-TTTCGGTGTTTTCAAAAATTTCCGTGTTTCAAAA
**
55620803 TTTTCA
64 AATTCA
* *
55620809 -TGTTTTCAAAAAAATTCTCGTGTTTT-AAAAATTTCCGTGTTTTCAAAAATTTTCGTGTTTCAA
1 GTG-TTT--AAAAAATT-TCGTGTTTTCAAAAATTTCGGTGTTTTCAAAAATTTCCGTGTTTC-A
55620872 AAAAATCCTC-
61 AAAAAT--TCA
* * * * * * * *
55620882 GTATATTTAAAACTTCCGTG-TTTCAAAAATTTTC-GTGTTTTAAAAAAAATTCTGATTTTTCAA
1 GTGT-TTAAAAAATTTCGTGTTTTCAAAAA-TTTCGGTGTTTT-CAAAAATTTCCG-TGTTTCAA
55620945 AAAATTTTCGA
62 AAAA--TTC-A
* *
55620956 GCT-TTT-AAAAATTTCG-GTGATTCAAAAATTTTC-GTGTTTTCAAAAATTTTCCCCTGTTTC-
1 G-TGTTTAAAAAATTTCGTGT-TTTCAAAAA-TTTCGGTGTTTTCAAAAA-TTT-CCGTGTTTCA
*
55621016 AAAATTGTC-
61 AAAAAT-TCA
* * * * *
55621025 GTGTTTTCAAAAATTTTCGTGTTTTTAAGAATTTTC-GTG-TTTCTAAAA-TTCTCGTGTTTTAA
1 GTG-TTT-AAAAAATTTCGTGTTTTCAA-AAATTTCGGTGTTTTCAAAAATTTC-CGTGTTTCAA
55621087 AAAATT
62 AAAATT
55621093 TTTCGTGTTC
Statistics
Matches: 334, Mismatches: 51, Indels: 82
0.72 0.11 0.18
Matches are distributed among these distances:
68 2 0.01
69 15 0.04
70 46 0.14
71 108 0.32
72 104 0.31
73 49 0.15
74 9 0.03
75 1 0.00
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.44
Consensus pattern (69 bp):
GTGTTTAAAAAATTTCGTGTTTTCAAAAATTTCGGTGTTTTCAAAAATTTCCGTGTTTCAAAAAA
TTCA
Found at i:55620768 original size:89 final size:88
Alignment explanation
Indices: 55620675--55621090 Score: 400
Period size: 89 Copynumber: 4.6 Consensus size: 88
55620665 AGGTGATTTA
* *
55620675 AAAAATCTTCGTGTTTTCAAAAACTTCGGTGTTTCAAAATTTTCATGTTTTCAAAAAAATTCCCG
1 AAAAATTTTCGTGTTTTCAAAAACTTC-GTGTTTCAAAATTTTCGTGTTTTCAAAAAAATTCCCG
55620740 TGTTTTAAAAATTTCCGTGTTTTC
65 TGTTTTAAAAATTTCCGTGTTTTC
* * *
55620764 AAAAATTTTCGTGTTTTCAAAAACTCCCGTGTTTCAAAATTTTCATGTTTTCAAAAAAATTCTCG
1 AAAAATTTTCGTGTTTTCAAAAACT-TCGTGTTTCAAAATTTTCGTGTTTTCAAAAAAATTCCCG
55620829 TGTTTTAAAAATTTCCGTGTTTTC
65 TGTTTTAAAAATTTCCGTGTTTTC
* * * * * *
55620853 AAAAATTTTCGTG-TTTCAAAAAAATCCTCGTATATTTAAAACTTCCGTG-TTTC--AAAAATTT
1 AAAAATTTTCGTGTTTTC--AAAAA-CTTCGTGT-TTCAAAATTTTCGTGTTTTCAAAAAAATTC
* * *
55620914 TCGTGTTTTAAAAAAAATTCTGAT-TTTTC
62 CCGTGTTTT--AAAAATTTCCG-TGTTTTC
* * * **
55620943 AAAAAATTTTCGAGCTTTT-AAAAATTTCGGTGATTCAAAAATTTTCGTGTTTTCAAAAATTTTC
1 -AAAAATTTTCGTG-TTTTCAAAAACTTC-GTGTTTC-AAAATTTTCGTGTTTTCAAAAAAATTC
* *
55621007 CCCTG-TTTCAAAATTGT-CGTGTTTTC
62 CCGTGTTTTAAAAATT-TCCGTGTTTTC
* ** *
55621033 AAAAATTTTCGTGTTTTTAAGAATTTTCGTGTTTCTAAAATTCTCGTGTTTT-AAAAAA
1 AAAAATTTTCGTGTTTTCAA-AAACTTCGTGTTTC-AAAATTTTCGTGTTTTCAAAAAA
55621091 TTTTTCGTGT
Statistics
Matches: 272, Mismatches: 35, Indels: 41
0.78 0.10 0.12
Matches are distributed among these distances:
88 29 0.11
89 137 0.50
90 62 0.23
91 30 0.11
92 3 0.01
93 11 0.04
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.44
Consensus pattern (88 bp):
AAAAATTTTCGTGTTTTCAAAAACTTCGTGTTTCAAAATTTTCGTGTTTTCAAAAAAATTCCCGT
GTTTTAAAAATTTCCGTGTTTTC
Found at i:55620875 original size:18 final size:17
Alignment explanation
Indices: 55620586--55621109 Score: 297
Period size: 18 Copynumber: 29.3 Consensus size: 17
55620576 TGTGTAAAAA
55620586 AAAAATCTTTCTGTGTTTC
1 AAAAAT-TTTC-GTGTTTC
* * *
55620605 AAAAATCTTCGTTTTTT
1 AAAAATTTTCGTGTTTC
**
55620622 TTAAA-TTTCGGTGTTTC
1 AAAAATTTTC-GTGTTTC
* *
55620639 AAAAATTTCCGCGTTTCC
1 AAAAATTTTCGTGTTT-C
*** *
55620657 AAAAATTCAGGTGATTTA
1 AAAAATTTTCGTG-TTTC
*
55620675 AAAAATCTTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
*
55620693 AAAAA-CTTCGGTGTTTC
1 AAAAATTTTC-GTGTTTC
*
55620710 -AAAATTTTCATGTTTTC
1 AAAAATTTTCGTG-TTTC
** *
55620727 AAAAAAATTCCCGTGTTTT
1 --AAAAATTTTCGTGTTTC
*
55620746 AAAAATTTCCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
55620764 AAAAATTTTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
* **
55620782 AAAAACTCCCGTGTTTC
1 AAAAATTTTCGTGTTTC
*
55620799 -AAAATTTTCATGTTTTC
1 AAAAATTTTCGTG-TTTC
* *
55620816 AAAAAAATTCTCGTGTTTT
1 --AAAAATTTTCGTGTTTC
*
55620835 AAAAATTTCCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
55620853 AAAAATTTTCGTGTTTC
1 AAAAATTTTCGTGTTTC
** *
55620870 AAAAAAATCCTCGTATATT-
1 --AAAAATTTTCGTGT-TTC
* * *
55620889 TAAAACTTCCGTGTTTC
1 AAAAATTTTCGTGTTTC
*
55620906 AAAAATTTTCGTGTTTTA
1 AAAAATTTTCGTG-TTTC
** *
55620924 AAAAAAATTCTGATTTTTC
1 AAAAATTTTC-G-TGTTTC
* *
55620943 AAAAAATTTTCGAGCTTTT
1 -AAAAATTTTCGTG-TTTC
*
55620962 AAAAA-TTTCGGTGATTC
1 AAAAATTTTC-GTGTTTC
55620979 AAAAATTTTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
*
55620997 AAAAATTTTCCCCTGTTTC
1 AAAAATTTT--CGTGTTTC
*
55621016 -AAAATTGTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
*
55621033 AAAAATTTTCGTGTTTTT
1 AAAAATTTTCGTG-TTTC
*
55621051 AAGAATTTTCGTGTTTC
1 AAAAATTTTCGTGTTTC
* * *
55621068 TAAAATTCTCGTGTTTTA
1 AAAAATTTTCGTG-TTTC
55621086 AAAAATTTTTCGTGTTCTC
1 AAAAA-TTTTCGTGTT-TC
55621105 AAAAA
1 AAAAA
55621110 AAATAATTAT
Statistics
Matches: 384, Mismatches: 86, Indels: 70
0.71 0.16 0.13
Matches are distributed among these distances:
16 22 0.06
17 120 0.31
18 158 0.41
19 51 0.13
20 33 0.09
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.44
Consensus pattern (17 bp):
AAAAATTTTCGTGTTTC
Done.