Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62681010
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1052928 characters in sequence are not A, C, G, or T
File 24 of 210
Found at i:8066598 original size:25 final size:27
Alignment explanation
Indices: 8066541--8066599 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 27
8066531 TATTCATACC
*
8066541 TTATTTCACTATCTCAATTCCATTGGA
1 TTATTTCACTATCTCAATTCCATTAGA
8066568 TT-TTTCAC-ATCTC-ATTCCATTAG-
1 TTATTTCACTATCTCAATTCCATTAGA
8066591 TTGATTTCA
1 TT-ATTTCA
8066600 ATTCATATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
23 2 0.07
24 9 0.31
25 10 0.34
26 6 0.21
27 2 0.07
ACGTcount: A:0.24, C:0.22, G:0.07, T:0.47
Consensus pattern (27 bp):
TTATTTCACTATCTCAATTCCATTAGA
Found at i:8073498 original size:15 final size:16
Alignment explanation
Indices: 8073478--8073512 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
8073468 GAGGGCCTAA
8073478 TAAA-TTATTAGGCCT
1 TAAATTTATTAGGCCT
*
8073493 TAAATTTATTATGCCT
1 TAAATTTATTAGGCCT
8073509 TAAA
1 TAAA
8073513 ATTAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (16 bp):
TAAATTTATTAGGCCT
Found at i:8075149 original size:2 final size:2
Alignment explanation
Indices: 8075142--8075180 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8075132 AATCATATTC
8075142 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8075181 CTTTTGAGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8075638 original size:42 final size:42
Alignment explanation
Indices: 8075591--8075690 Score: 130
Period size: 42 Copynumber: 2.4 Consensus size: 42
8075581 GCTCTCGGTA
8075591 TCGCACACTTAGTGCTCGTTATTCAACATC-TCCATTTTAATT
1 TCGCACACTTAGTGCTCGTTATTCAACATCGT-CATTTTAATT
* * * * *
8075633 TCGCACGCTTAGTGCCCTTTATTCAACCTCGTCATTTTAGTT
1 TCGCACACTTAGTGCTCGTTATTCAACATCGTCATTTTAATT
*
8075675 TTGCACACTTAGTGCT
1 TCGCACACTTAGTGCT
8075691 GTTCATATAA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 48 0.98
43 1 0.02
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (42 bp):
TCGCACACTTAGTGCTCGTTATTCAACATCGTCATTTTAATT
Found at i:8078339 original size:2 final size:2
Alignment explanation
Indices: 8078332--8078360 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8078322 TTCATTATTC
8078332 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8078361 ATGTATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8083977 original size:17 final size:17
Alignment explanation
Indices: 8083955--8083989 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
8083945 AATCAATACA
8083955 ACAATGCTTCAAAGTGG
1 ACAATGCTTCAAAGTGG
8083972 ACAATGCTTCAAAGTGG
1 ACAATGCTTCAAAGTGG
8083989 A
1 A
8083990 TATCGAGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (17 bp):
ACAATGCTTCAAAGTGG
Found at i:8091753 original size:8 final size:8
Alignment explanation
Indices: 8091740--8091768 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
8091730 TTTTAAATGA
8091740 TATTTTAT
1 TATTTTAT
8091748 TATTTTAT
1 TATTTTAT
8091756 TATTTTAT
1 TATTTTAT
8091764 TATTT
1 TATTT
8091769 AGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:8111959 original size:16 final size:16
Alignment explanation
Indices: 8111938--8111973 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
8111928 TTTGGTTCGC
8111938 TGTAATGGAATAGAAT
1 TGTAATGGAATAGAAT
* *
8111954 TGTAATGTAATAGAGT
1 TGTAATGGAATAGAAT
8111970 TGTA
1 TGTA
8111974 GTCAGTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.25, T:0.36
Consensus pattern (16 bp):
TGTAATGGAATAGAAT
Found at i:8112180 original size:11 final size:11
Alignment explanation
Indices: 8112161--8112237 Score: 52
Period size: 11 Copynumber: 7.1 Consensus size: 11
8112151 AGAATGATTA
*
8112161 TTAAAAATAAT
1 TTAATAATAAT
8112172 TTAATAATAA-
1 TTAATAATAAT
*
8112182 ATAATAAATAAT
1 TTAAT-AATAAT
* *
8112194 TTAATCATATT
1 TTAATAATAAT
*
8112205 TTTAT-ATAAT
1 TTAATAATAAT
* *
8112215 TTAACAATATTT
1 TTAATAATA-AT
8112227 TTAAT-ATAAT
1 TTAATAATAAT
8112237 T
1 T
8112238 ATTTTTATAT
Statistics
Matches: 50, Mismatches: 12, Indels: 9
0.70 0.17 0.13
Matches are distributed among these distances:
10 13 0.26
11 28 0.56
12 9 0.18
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.47
Consensus pattern (11 bp):
TTAATAATAAT
Found at i:8112215 original size:21 final size:22
Alignment explanation
Indices: 8112189--8112237 Score: 75
Period size: 21 Copynumber: 2.3 Consensus size: 22
8112179 TAAATAATAA
8112189 ATAATTTAATC-ATATTTTT-AT
1 ATAATTTAA-CAATATTTTTAAT
8112210 ATAATTTAACAATATTTTTAAT
1 ATAATTTAACAATATTTTTAAT
8112232 ATAATT
1 ATAATT
8112238 ATTTTTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.04
21 17 0.65
22 8 0.31
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (22 bp):
ATAATTTAACAATATTTTTAAT
Found at i:8112270 original size:25 final size:25
Alignment explanation
Indices: 8112240--8112291 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
8112230 ATATAATTAT
* *
8112240 TTTTATATTATATTATGTTAAAATA
1 TTTTATATTAAATTATATTAAAATA
* *
8112265 TTTTATTTTAAATTATATTAAAGTA
1 TTTTATATTAAATTATATTAAAATA
8112290 TT
1 TT
8112292 CAAATATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (25 bp):
TTTTATATTAAATTATATTAAAATA
Found at i:8118288 original size:44 final size:43
Alignment explanation
Indices: 8118238--8118662 Score: 183
Period size: 44 Copynumber: 9.6 Consensus size: 43
8118228 TTAGGGAGAT
8118238 AAGATCTGTAATATTCGATCTACTTCACGCCAGTACATGAAGAC
1 AAGATCTGT-ATATTCGATCTACTTCACGCCAGTACATGAAGAC
* * * * *** *
8118282 AAGATCTGTTTTCTTCGATCTGCTTTGC-CACCAGTATGGGAAGGC
1 AAGATCTG-TATATTCGATCTAC-TT-CACGCCAGTACATGAAGAC
8118327 AAGATCTGGTATA-TCTGATCTACTTCACGCCAGTACATGAAGAC
1 AAGATCT-GTATATTC-GATCTACTTCACGCCAGTACATGAAGAC
* * * * * * *** *
8118371 AAGATCTGCTTTCTTTGATCTGCTTCGCCACCAGTATGGGAAGAT
1 AAGATCTG-TATATTCGATCTACTTC-ACGCCAGTACATGAAGAC
* * * * * *
8118416 AAGATCTGTATATTTGATCCACTTCGCTACC-GATATAGGAAGAC
1 AAGATCTGTATATTCGATCTACTTCAC-GCCAG-TACATGAAGAC
* * * * * ** * *
8118460 AGGACCTACTATCTTTGATCTGTTTCACGCCGGTACATGAAAAC
1 AAGATCT-GTATATTCGATCTACTTCACGCCAGTACATGAAGAC
* * * * * * * *
8118504 AAGATCTGCTTTCTTTGATCTGCTTCGCCACCAGTATGA-GAAGGC
1 AAGATCTG-TATATTCGATCTACTTC-ACGCCAGTA-CATGAAGAC
* ** *
8118549 AAGATCTGGTATCTAAGATCTACTTCACGCCAGTACATGAAGGC
1 AAGATCT-GTATATTCGATCTACTTCACGCCAGTACATGAAGAC
* * * * *** *
8118593 AGGATCTGTTTTCTTCGATCTACTTCACCACCAGTATGGGAAGAT
1 AAGATCTG-TATATTCGATCTACTTCA-CGCCAGTACATGAAGAC
*
8118638 AAGATCTGTATATTCGATCCACTTC
1 AAGATCTGTATATTCGATCTACTTC
8118663 GCTACCGATA
Statistics
Matches: 284, Mismatches: 77, Indels: 40
0.71 0.19 0.10
Matches are distributed among these distances:
43 6 0.02
44 160 0.56
45 114 0.40
46 4 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
AAGATCTGTATATTCGATCTACTTCACGCCAGTACATGAAGAC
Found at i:8118391 original size:89 final size:87
Alignment explanation
Indices: 8118238--8118440 Score: 307
Period size: 89 Copynumber: 2.3 Consensus size: 87
8118228 TTAGGGAGAT
*
8118238 AAGATCTGTAATATTCGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCT
1 AAGATCTGT-ATATT-GATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCT
* *
8118303 GCTTTGCCACCAGTATGGGAAGGC
64 GCTTCGCCACCAGTATGGGAAGAC
*
8118327 AAGATCTGGTATATCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTTGATCT
1 AAGATCT-GTATAT-TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCT
*
8118392 GCTTCGCCACCAGTATGGGAAGAT
64 GCTTCGCCACCAGTATGGGAAGAC
*
8118416 AAGATCTGTATATTTGATCCACTTC
1 AAGATCTGTATA-TTGATCTACTTC
8118441 GCTACCGATA
Statistics
Matches: 105, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
88 15 0.14
89 87 0.83
90 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (87 bp):
AAGATCTGTATATTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCTGC
TTCGCCACCAGTATGGGAAGAC
Found at i:8118458 original size:89 final size:89
Alignment explanation
Indices: 8118238--8118481 Score: 262
Period size: 89 Copynumber: 2.7 Consensus size: 89
8118228 TTAGGGAGAT
* * * * *
8118238 AAGATCT-GTAATAT-TCGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGAT
1 AAGATCTGGT-ATATCT-GATCCACTTCACACCAGTACAGGAAGACAAGATCTGCTTTCTTTGAT
* *
8118301 CTGCTTTGCCACCAGTATGGGAAGGC
64 CTGCTTCGCCACCAGTATGGGAAGAC
* * *
8118327 AAGATCTGGTATATCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTTGATCT
1 AAGATCTGGTATATCTGATCCACTTCACACCAGTACAGGAAGACAAGATCTGCTTTCTTTGATCT
*
8118392 GCTTCGCCACCAGTATGGGAAGAT
66 GCTTCGCCACCAGTATGGGAAGAC
* * * * * * *
8118416 AAGATCT-GTATATTTGATCCACTTCGCTACC-GATATAGGAAGACAGGACCTACTATCTTTGAT
1 AAGATCTGGTATATCTGATCCACTTCAC-ACCAG-TACAGGAAGACAAGATCTGCTTTCTTTGAT
8118479 CTG
64 CTG
8118482 TTTCACGCCG
Statistics
Matches: 136, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
88 18 0.13
89 115 0.85
90 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (89 bp):
AAGATCTGGTATATCTGATCCACTTCACACCAGTACAGGAAGACAAGATCTGCTTTCTTTGATCT
GCTTCGCCACCAGTATGGGAAGAC
Found at i:8118562 original size:89 final size:89
Alignment explanation
Indices: 8118483--8118645 Score: 227
Period size: 89 Copynumber: 1.8 Consensus size: 89
8118473 TTTGATCTGT
* * * * *
8118483 TTCACGCCGGTACATGAAAACAAGATCTGCTTTCTTTGATCTGCTTCGCCACCAGTATGAGAAGG
1 TTCACGCCAGTACATGAAAACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGAGAAGA
8118548 CAAGATCTGGTATCTAAGATCTAC
66 CAAGATCTGGTATCTAAGATCTAC
** * * *
8118572 TTCACGCCAGTACATGAAGGCAGGATCTGTTTTCTTCGATCTACTTCACCACCAGTATGGGAAGA
1 TTCACGCCAGTACATGAAAACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGAGAAGA
*
8118637 TAAGATCTG
66 CAAGATCTG
8118646 TATATTCGAT
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
89 63 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (89 bp):
TTCACGCCAGTACATGAAAACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGAGAAGA
CAAGATCTGGTATCTAAGATCTAC
Found at i:8118620 original size:133 final size:133
Alignment explanation
Indices: 8118343--8118620 Score: 335
Period size: 133 Copynumber: 2.1 Consensus size: 133
8118333 TGGTATATCT
*
8118343 GATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTTGATCTGCTTCGCCACCAGTAT
1 GATCTACTTCACGCCAGTACATGAAAACAAGATCTGCTTTCTTTGATCTGCTTCGCCACCAGTAT
* * ** * *
8118408 GGGAAGATAAGATCTGTATATTTGATCCACTTCGCTACCGATATAGGAAGACAGGACCTACTATC
66 GAGAAGACAAGATCTGTATATAAGATCCACTTCACTACCGATACAGGAAGACAGGACCTACTATC
*
8118473 TTT
131 TTC
** *
8118476 GATCTGTTTCACGCCGGTACATGAAAACAAGATCTGCTTTCTTTGATCTGCTTCGCCACCAGTAT
1 GATCTACTTCACGCCAGTACATGAAAACAAGATCTGCTTTCTTTGATCTGCTTCGCCACCAGTAT
* * * * * * * ** *
8118541 GAGAAGGCAAGATCTGGTATCTAAGATCTACTTCAC-GCC-AGTACATGAAGGCAGGATCTGTTT
66 GAGAAGACAAGATCT-GTATATAAGATCCACTTCACTACCGA-TACAGGAAGACAGGACCTACTA
8118604 TCTTC
129 TCTTC
8118609 GATCTACTTCAC
1 GATCTACTTCAC
8118621 CACCAGTATG
Statistics
Matches: 120, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
132 1 0.01
133 104 0.87
134 15 0.12
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (133 bp):
GATCTACTTCACGCCAGTACATGAAAACAAGATCTGCTTTCTTTGATCTGCTTCGCCACCAGTAT
GAGAAGACAAGATCTGTATATAAGATCCACTTCACTACCGATACAGGAAGACAGGACCTACTATC
TTC
Found at i:8118647 original size:222 final size:222
Alignment explanation
Indices: 8118261--8118685 Score: 706
Period size: 222 Copynumber: 1.9 Consensus size: 222
8118251 TTCGATCTAC
* * * *
8118261 TTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTTGCCACCAGTATGGGAAGG
1 TTCACGCCAGTACATGAAAACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGAGAAGG
** *
8118326 CAAGATCTGGTATATCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTTGATC
66 CAAGATCTGGTATATAAGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATC
* * *
8118391 TGCTTCGCCACCAGTATGGGAAGATAAGATCTGTATATTTGATCCACTTCGCTACCGATATAGGA
131 TACTTCACCACCAGTATGGGAAGATAAGATCTGTATATTCGATCCACTTCGCTACCGATATAGGA
8118456 AGACAGGACCTACTATCTTTGATCTGT
196 AGACAGGACCTACTATCTTTGATCTGT
* *
8118483 TTCACGCCGGTACATGAAAACAAGATCTGCTTTCTTTGATCTGCTTCGCCACCAGTATGAGAAGG
1 TTCACGCCAGTACATGAAAACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGAGAAGG
* * * *
8118548 CAAGATCTGGTATCTAAGATCTACTTCACGCCAGTACATGAAGGCAGGATCTGTTTTCTTCGATC
66 CAAGATCTGGTATATAAGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATC
8118613 TACTTCACCACCAGTATGGGAAGATAAGATCTGTATATTCGATCCACTTCGCTACCGATATAGGA
131 TACTTCACCACCAGTATGGGAAGATAAGATCTGTATATTCGATCCACTTCGCTACCGATATAGGA
8118678 AGACAGGA
196 AGACAGGA
8118686 TCTGCTGCTT
Statistics
Matches: 187, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
222 187 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (222 bp):
TTCACGCCAGTACATGAAAACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGAGAAGG
CAAGATCTGGTATATAAGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATC
TACTTCACCACCAGTATGGGAAGATAAGATCTGTATATTCGATCCACTTCGCTACCGATATAGGA
AGACAGGACCTACTATCTTTGATCTGT
Found at i:8132979 original size:18 final size:19
Alignment explanation
Indices: 8132952--8133025 Score: 105
Period size: 19 Copynumber: 3.8 Consensus size: 19
8132942 AATTTTTGAG
8132952 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
8132971 GAT-TGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
8132989 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
8133010 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
8133026 GGATATGATT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
18 15 0.31
19 17 0.35
20 2 0.04
21 15 0.31
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:8133000 original size:21 final size:21
Alignment explanation
Indices: 8132953--8133014 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
8132943 ATTTTTGAGG
8132953 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
*
8132972 AT-TGCAATCCTAGATATGAT
1 ATATGCAATCTTAGATATGAT
8132992 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
8133013 AT
1 AT
8133015 GTAATCTTAG
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.39
19 2 0.05
20 2 0.05
21 19 0.50
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:8133033 original size:22 final size:23
Alignment explanation
Indices: 8132984--8133049 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
8132974 TGCAATCCTA
*
8132984 GATATGATATATGCAATCTT--A-
1 GATATGAT-TATGTAATCTTAGAG
8133005 GATATGA-TATGTAATCTTAGAG
1 GATATGATTATGTAATCTTAGAG
*
8133027 GATATGATTTTGTAATCTTAGAG
1 GATATGATTATGTAATCTTAGAG
8133050 ATTTAATTTG
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 10 0.26
21 8 0.21
22 7 0.18
23 14 0.36
ACGTcount: A:0.35, C:0.06, G:0.20, T:0.39
Consensus pattern (23 bp):
GATATGATTATGTAATCTTAGAG
Found at i:8133061 original size:21 final size:23
Alignment explanation
Indices: 8133005--8133061 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
8132995 TGCAATCTTA
*
8133005 GATATG-ATATGTAATCTTAGAG
1 GATATGAATTTGTAATCTTAGAG
*
8133027 GATATGATTTTGTAATCTTAGA-
1 GATATGAATTTGTAATCTTAGAG
*
8133049 GAT-TTAATTTGTA
1 GATATGAATTTGTA
8133062 GATACCATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 8 0.27
22 9 0.30
23 13 0.43
ACGTcount: A:0.33, C:0.04, G:0.19, T:0.44
Consensus pattern (23 bp):
GATATGAATTTGTAATCTTAGAG
Found at i:8133654 original size:31 final size:31
Alignment explanation
Indices: 8133590--8133656 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
8133580 AATTTTGTTA
* *
8133590 ATGTAATTATTATTATTATTATTATTTTCAT
1 ATGTAATTATTATTATTATTACTATTATCAT
8133621 ATGTAATTATTATTATT-TTAGCTATATAT-AT
1 ATGTAATTATTATTATTATTA-CTAT-TATCAT
8133652 ATGTA
1 ATGTA
8133657 TACTTGTTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 3 0.09
31 27 0.84
32 2 0.06
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.57
Consensus pattern (31 bp):
ATGTAATTATTATTATTATTACTATTATCAT
Found at i:8133809 original size:16 final size:16
Alignment explanation
Indices: 8133746--8133809 Score: 53
Period size: 15 Copynumber: 4.2 Consensus size: 16
8133736 ATTTTTATTT
*
8133746 TATTT-TATTTATATA
1 TATTTATATTTGTATA
* * *
8133761 TAATTATTTTTTTATA
1 TATTTATATTTGTATA
*
8133777 -ATCTATATTTGT-TA
1 TATTTATATTTGTATA
*
8133791 TATTTATCTTTGTATA
1 TATTTATATTTGTATA
8133807 TAT
1 TAT
8133810 ATGTATGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 5
0.73 0.18 0.10
Matches are distributed among these distances:
14 2 0.05
15 22 0.59
16 13 0.35
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (16 bp):
TATTTATATTTGTATA
Found at i:8134250 original size:19 final size:20
Alignment explanation
Indices: 8134209--8134250 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
8134199 ATTTCTAGGC
* *
8134209 CATTGTAATATTTATTATTG
1 CATTGTAATATTTAATATAG
8134229 CATTGT-ATATTTAATATAG
1 CATTGTAATATTTAATATAG
8134248 CAT
1 CAT
8134251 CACATCATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (20 bp):
CATTGTAATATTTAATATAG
Found at i:8144551 original size:6 final size:6
Alignment explanation
Indices: 8144540--8144564 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8144530 TCAATCACAA
8144540 CTCCAT CTCCAT CTCCAT CTCCAT C
1 CTCCAT CTCCAT CTCCAT CTCCAT C
8144565 ATGGGACTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.52, G:0.00, T:0.32
Consensus pattern (6 bp):
CTCCAT
Found at i:8149014 original size:14 final size:14
Alignment explanation
Indices: 8148978--8149016 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
8148968 GCTTAATAAA
8148978 TTATGACATATGCT
1 TTATGACATATGCT
* * *
8148992 TAATAACATATGGT
1 TTATGACATATGCT
8149006 TTATGACATAT
1 TTATGACATAT
8149017 AAACTAATGA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (14 bp):
TTATGACATATGCT
Found at i:8149289 original size:58 final size:57
Alignment explanation
Indices: 8149227--8149389 Score: 145
Period size: 58 Copynumber: 2.8 Consensus size: 57
8149217 TATAGTATTA
* * *
8149227 TATATTATGATTTTAGTAAATTCATA-TAATAATAATTATATTAAGAATTTTATTAAAT
1 TATATTATAATTTTAGTAAATT-ATATTAATAATAATTATATTAA-AATATGATTAAAT
* * * *
8149285 TATA-TAAAATTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGGTTAAAT
1 TATATTATAATTTTAGTAAATTATA-TTAATAATAATTATATTAAAATATGATTAAAT
* * * *
8149342 TAT-TTATTATTTTTATTAAATCATTTTTAATAATAATCT-TATTAAAAT
1 TATATTA-TAATTTTAGTAAATTA-TATTAATAATAAT-TATATTAAAAT
8149390 TTAATAACAA
Statistics
Matches: 87, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
56 3 0.03
57 29 0.33
58 53 0.61
59 2 0.02
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (57 bp):
TATATTATAATTTTAGTAAATTATATTAATAATAATTATATTAAAATATGATTAAAT
Found at i:8149297 original size:20 final size:21
Alignment explanation
Indices: 8149260--8149309 Score: 84
Period size: 20 Copynumber: 2.4 Consensus size: 21
8149250 ATATAATAAT
8149260 AATTATATTAAGAATTTTATTA
1 AATTATA-TAAGAATTTTATTA
8149282 AATTATATAA-AATTTTATTA
1 AATTATATAAGAATTTTATTA
8149302 AATTATAT
1 AATTATAT
8149310 TTAATAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 18 0.64
21 3 0.11
22 7 0.25
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (21 bp):
AATTATATAAGAATTTTATTA
Found at i:8149310 original size:10 final size:10
Alignment explanation
Indices: 8149260--8149310 Score: 57
Period size: 10 Copynumber: 4.9 Consensus size: 10
8149250 ATATAATAAT
8149260 AATTATATTAA
1 AATTATATT-A
*
8149271 GAATTTTATTA
1 -AATTATATTA
*
8149282 AATTATATAA
1 AATTATATTA
*
8149292 AATTTTATTA
1 AATTATATTA
8149302 AATTATATT
1 AATTATATT
8149311 TAATAATAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
10 24 0.73
11 1 0.03
12 8 0.24
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (10 bp):
AATTATATTA
Found at i:8149571 original size:45 final size:44
Alignment explanation
Indices: 8149484--8149574 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 44
8149474 TACAACATCC
8149484 TTCCATTCAACCAAACACAAGAATACTATTACAGCTCTATTCCA
1 TTCCATTCAACCAAACACAAGAATACTATTACAGCTCTATTCCA
* *
8149528 TTCCATTCAACCAAACA-ATTGAATTATTATTACAGCTCTATTCCA
1 TTCCATTCAACCAAACACA-AGAA-TACTATTACAGCTCTATTCCA
8149573 TT
1 TT
8149575 ACAGTGAACC
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 20 0.47
45 22 0.51
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.33
Consensus pattern (44 bp):
TTCCATTCAACCAAACACAAGAATACTATTACAGCTCTATTCCA
Found at i:8154945 original size:2 final size:2
Alignment explanation
Indices: 8154938--8154963 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8154928 TATGTATTGG
8154938 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
8154964 GACTTTGGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8157107 original size:15 final size:15
Alignment explanation
Indices: 8157087--8157116 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8157077 TATTTAGGCA
*
8157087 TGCATTTCATGCATT
1 TGCATTACATGCATT
8157102 TGCATTACATGCATT
1 TGCATTACATGCATT
8157117 AGAGTCCATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.20, G:0.13, T:0.43
Consensus pattern (15 bp):
TGCATTACATGCATT
Found at i:8161808 original size:44 final size:43
Alignment explanation
Indices: 8161759--8161942 Score: 106
Period size: 44 Copynumber: 4.2 Consensus size: 43
8161749 GAAATTACAG
*
8161759 ATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACAGCGA
1 ATCTTATCTCCCTAAGCAGTAGCGGAACAGATCGAAGACA-CGA
* ** *
8161803 ATCTTATCTTCCCCAAG-AGTAG-GGAAACAGATTTAAGCCAC-A
1 ATCTTATC-TCCCTAAGCAGTAGCGG-AACAGATCGAAGACACGA
* * * * * * * * * *
8161845 AGTCCTATGTCCCTGACCAGCAGAGGAATAGATTGGAA-ATTACAA
1 A-TCTTATCTCCCTAAGCAGTAGCGGAACAGA-TCGAAGA-CACGA
* * * *
8161890 ATCTTGTCTCTCTAAGCAGTAGCGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGCGGAACAGATCGAAGAC-ACGA
8161934 ATCTTATCT
1 ATCTTATCT
8161943 TCCCCAGGAG
Statistics
Matches: 99, Mismatches: 31, Indels: 20
0.66 0.21 0.13
Matches are distributed among these distances:
42 7 0.07
43 21 0.21
44 62 0.63
45 9 0.09
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (43 bp):
ATCTTATCTCCCTAAGCAGTAGCGGAACAGATCGAAGACACGA
Found at i:8161873 original size:131 final size:130
Alignment explanation
Indices: 8161710--8162075 Score: 588
Period size: 131 Copynumber: 2.8 Consensus size: 130
8161700 TTGGTGAAAT
* *
8161710 CACAAGTCCTATGTACCTGACCAGCAGTGGAATAGGTTAGAAATTACAGATCTTATCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTT-GAAATTACAGATCTTGTCTCCCTAAG
*
8161775 CAGTAGCGGAGCAGATCGAAGACAGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTTAAG
65 CAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTTAAG
8161840 C
130 C
* * * *
8161841 CACAAGTCCTATGTCCCTGACCAGCAGAGGAATAGATTGGAAATTACAAATCTTGTCTCTCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTT-GAAATTACAGATCTTGTCTCCCTAAG
*
8161906 CAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGGAGTAGGGAAACAGATTTAAG
65 CAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTTAAG
8161971 C
130 C
* *
8161972 CACACGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGAAAATTGCAGATCTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTG-AAATTACAGATCTTGTCTCCCTAAG
* **
8162037 CAATAGCGGAGCAGATCGAAGACGGTAAATCTTATCTTC
65 CAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTC
8162076 AAGTGAAATG
Statistics
Matches: 216, Mismatches: 18, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
130 1 0.00
131 215 1.00
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (130 bp):
CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGAAATTACAGATCTTGTCTCCCTAAGC
AGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTTAAGC
Found at i:8162227 original size:44 final size:44
Alignment explanation
Indices: 8162164--8162476 Score: 217
Period size: 44 Copynumber: 6.9 Consensus size: 44
8162154 GGAAATGGTG
* * *
8162164 AATCTTATCTCCCTGATGTTACAGTGGAGTAGATTAAAGCCAAA
1 AATCTCATCTCCCTGATGTTACAGTGGAGCAGATTAAAGCCAGA
*
8162208 AATCTCATCTCCCTGATGTTACAGTGGAGCAGATTAAAGCTAGA
1 AATCTCATCTCCCTGATGTTACAGTGGAGCAGATTAAAGCCAGA
* * * *
8162252 AATCTCATCTCCCTGATATTACAGCGGAGCAGATTGAAGCTC-GT
1 AATCTCATCTCCCTGATGTTACAGTGGAGCAGATTAAAGC-CAGA
* **
8162296 AATC-CTATCTCCCTGA-GATTACAGTGGAGCGGATTAAA-ATA-A
1 AATCTC-ATCTCCCTGATG-TTACAGTGGAGCAGATTAAAGCCAGA
* * * * *
8162338 AGGATTTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGATTGAAGCCAGA
1 A--ATCTCATCTCCCTGATGTTACAGT---G--GA--G---CAGATTAAAGCCAGA
* * *
8162394 AATCTTATCTCCCTGA-GATTACAGTGGAGCAGATTGAAGCTA-A
1 AATCTCATCTCCCTGATG-TTACAGTGGAGCAGATTAAAGCCAGA
* * * *
8162437 TAATCCCTTCTCCCTGATATTACAGTGGAGCGGATTAAAG
1 -AATCTCATCTCCCTGATGTTACAGTGGAGCAGATTAAAG
8162477 GATCTTATCT
Statistics
Matches: 214, Mismatches: 32, Indels: 46
0.73 0.11 0.16
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 171 0.80
45 1 0.00
47 2 0.01
49 4 0.02
51 2 0.01
53 1 0.00
54 27 0.13
55 1 0.00
56 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (44 bp):
AATCTCATCTCCCTGATGTTACAGTGGAGCAGATTAAAGCCAGA
Found at i:8162318 original size:88 final size:87
Alignment explanation
Indices: 8162164--8162472 Score: 268
Period size: 88 Copynumber: 3.4 Consensus size: 87
8162154 GGAAATGGTG
* * * * *
8162164 AATCTTATCTCCCTGATGTTACAGTGGAGTAGATTAAAGCCAAAAAT-CTCATCTCCCTGATG-T
1 AATCTCATCTCCCTGATATTACAGTGGAGCAGATTGAAGCCAGAAATCCT-ATCTCCCTGA-GAT
8162227 TACAGTGGAGCAGATTAAAGCTAGA
64 TACAGTGGAGCAGATTAAAGCTA-A
* *
8162252 AATCTCATCTCCCTGATATTACAGCGGAGCAGATTGAAGCTC-GTAATCCTATCTCCCTGAGATT
1 AATCTCATCTCCCTGATATTACAGTGGAGCAGATTGAAGC-CAGAAATCCTATCTCCCTGAGATT
* *
8162316 ACAGTGGAGCGGATTAAA-ATAA
65 ACAGTGGAGCAGATTAAAGCTAA
* * * *
8162338 AGGATTTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGTATCAGATTGAAGCCAGAAATCTTAT
1 A--ATCTCATCTCCCTGATA-TTACAGT---G--GA--G---CAGATTGAAGCCAGAAATCCTAT
*
8162402 CTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAA
53 CTCCCTGAGATTACAGTGGAGCAGATTAAAGCTAA
* * *
8162437 TAATCCCTTCTCCCTGATATTACAGTGGAGCGGATT
1 -AATCTCATCTCCCTGATATTACAGTGGAGCAGATT
8162473 AAAGGATCTT
Statistics
Matches: 177, Mismatches: 24, Indels: 40
0.73 0.10 0.17
Matches are distributed among these distances:
86 2 0.01
87 4 0.02
88 90 0.51
89 3 0.02
91 2 0.01
93 4 0.02
95 2 0.01
97 1 0.01
98 64 0.36
99 4 0.02
100 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (87 bp):
AATCTCATCTCCCTGATATTACAGTGGAGCAGATTGAAGCCAGAAATCCTATCTCCCTGAGATTA
CAGTGGAGCAGATTAAAGCTAA
Found at i:8162548 original size:137 final size:139
Alignment explanation
Indices: 8162237--8162558 Score: 497
Period size: 137 Copynumber: 2.3 Consensus size: 139
8162227 TACAGTGGAG
* * * * * **
8162237 CAGATTAAAGCTAGAAATCTCATCTCCCTGATATTACAGCGGAGCAGATTGAAGCTCGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAATAATCCT
*
8162302 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATTTTATCTCTCTGAAGTTACAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGGATT---ATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
*
8162367 AGTAGATCGTAT
128 AGTAGATCGCAT
8162379 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAATAATCCC
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAATAAT-CC
*
8162444 T-TCTCCCTGATATTACAGTGGAGCGGA-T-TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAG
65 TATCTCCCTGAGATTACAGTGGAGCGGATTATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAG
8162506 TAGATCGCAT
130 TAGATCGCAT
8162516 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGA
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGA
8162559 ATAGACCGAA
Statistics
Matches: 169, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
137 85 0.50
141 1 0.01
142 80 0.47
143 3 0.02
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (139 bp):
CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAATAATCCT
ATCTCCCTGAGATTACAGTGGAGCGGATTATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGT
AGATCGCAT
Found at i:8163703 original size:15 final size:16
Alignment explanation
Indices: 8163679--8163711 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
8163669 TTCGACTTGG
*
8163679 TTTTATTTTTTTTATT
1 TTTTATTTTTCTTATT
8163695 TTTTA-TTTTCTTATT
1 TTTTATTTTTCTTATT
8163710 TT
1 TT
8163712 CTTGCGTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTATTTTTCTTATT
Found at i:8167797 original size:17 final size:17
Alignment explanation
Indices: 8167775--8167813 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
8167765 AACTAGTATA
8167775 ATAATAA-ACAATAATAT
1 ATAATAATA-AATAATAT
*
8167792 ATAATAATAAGTAATAT
1 ATAATAATAAATAATAT
8167809 ATAAT
1 ATAAT
8167814 GTACTACTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 19 0.95
18 1 0.05
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (17 bp):
ATAATAATAAATAATAT
Found at i:8168224 original size:242 final size:238
Alignment explanation
Indices: 8167682--8168493 Score: 701
Period size: 242 Copynumber: 3.4 Consensus size: 238
8167672 TGCATATTAT
* * * * * * * *
8167682 ATGATATGATGTAACATTCTATAATATAGTAGGAGGGCTAAGTTTTAAATGTACAAAAAGTATAG
1 ATGATATGATATAACATTATATAATAAAGTAAGAGAGCTAACTTTCAAATGTACGAAAAGTATAG
* * * *
8167747 GGACTTAGAGTATATTTTAACTAGTATAATAATAAACAATAATATATAATAATAAGTAATATATA
66 GGACTTAGA-CATATTTAAACTAGTATAATAATAAACAA-AA-ATAT-ATAAGAATTAATATATA
* * * *
8167812 ATGTACTACTATTATGTATA--ACTCT-T-ATTATAAT-ATAG-ATTA-TAA-T--ATGACATTA
127 ATGT-CTACTATTAT-TATATTA-TATATAATTATAATAAAAGAAATAGTAATTACATGATATTA
*
8167867 CAATGTTTAATCATTTATGCATATAT--A-TA-TAA-ACTATTAATATA-TA
189 TAATGTTTAATCATTTATGCATATATAAACTATTAATA-TATT-ATATACTA
* * * * *
8167913 AT-AT-T-ATATAACATTATATAGTATAGTAGGATGA-CTAACTTTCTAATATAC-AAGAAGTAT
1 ATGATATGATATAACATTATATAATAAAGTAAGA-GAGCTAACTTTCAAATGTACGAA-AAGTAT
* *
8167973 AGGGACTTAGTACATATTTAAACTTGTATAATAACAAACAAAAATATATAAGAATTAATATATAA
64 AGGGACTTAG-ACATATTTAAACTAGTATAATAATAAACAAAAATATATAAGAATTAATATATAA
* *
8168038 TGTGCTGCTATTATTATATTATATATAAAATATAATAAAAGAAATAGTAATTACATGATATTATA
128 TGT-CTACTATTATTATATTATATAT-AATTATAATAAAAGAAATAGTAATTACATGATATTATA
*
8168103 ATGTTTAATCATTAATGCATATATAAACTATTAATATATTATATACTA
191 ATGTTTAATCATTTATGCATATATAAACTATTAATATATTATATACTA
* *
8168151 CATGATATGATATAATATTATATAATAAAGTAAGAGAGCTAACTTTCAAATGTATGAAAAGTATA
1 -ATGATATGATATAACATTATATAATAAAGTAAGAGAGCTAACTTTCAAATGTACGAAAAGTATA
* * * * * *
8168216 GAGACTTAGAACATATTTCAACCAGTATAATAATAAACAATAATA-AT-TGATATATAATGTACT
65 GGGACTTAG-ACATATTTAAACTAGTATAATAATAAACAAAAATATATAAGA-AT-TAATATA-T
* * * * * *
8168279 AATATTTTA-TATAACTATTATTATATTATAGATTACAATAAAAGATATAGT-ATTACATGATAT
126 AAT-GTCTACTATTATTA-TATTATA-TATA-ATTATAATAAAAGAAATAGTAATTACATGATAT
8168342 TATAATGTTTAATCATTTATGCATATATATAAACTATTAATATATTATATACTA
187 TATAATGTTTAATCATTTATGC--ATATATAAACTATTAATATATTATATACTA
* * * * * *
8168396 TATGATATGATATGATATAACATTATAATAG-AAG-G-GCTAACTTTCAAATTTACG-AAAGTAT
1 -ATGATATGATATAACATTATATAATAA-AGTAAGAGAGCTAACTTTCAAATGTACGAAAAGTAT
* * *
8168457 AGGGGCTTCGAGCATATTTCAACTATAGTATAATAAT
64 AGGGACTTAGA-CATATTTAAAC--TAGTATAATAAT
8168494 TAATATATAA
Statistics
Matches: 483, Mismatches: 59, Indels: 65
0.80 0.10 0.11
Matches are distributed among these distances:
224 4 0.01
225 30 0.06
226 6 0.01
227 4 0.01
228 84 0.17
229 6 0.01
230 5 0.01
231 5 0.01
232 1 0.00
234 32 0.07
236 1 0.00
237 7 0.01
238 9 0.02
239 3 0.01
240 4 0.01
241 8 0.02
242 118 0.24
243 65 0.13
244 33 0.07
245 56 0.12
246 2 0.00
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (238 bp):
ATGATATGATATAACATTATATAATAAAGTAAGAGAGCTAACTTTCAAATGTACGAAAAGTATAG
GGACTTAGACATATTTAAACTAGTATAATAATAAACAAAAATATATAAGAATTAATATATAATGT
CTACTATTATTATATTATATATAATTATAATAAAAGAAATAGTAATTACATGATATTATAATGTT
TAATCATTTATGCATATATAAACTATTAATATATTATATACTA
Found at i:8168437 original size:243 final size:243
Alignment explanation
Indices: 8168054--8168493 Score: 638
Period size: 243 Copynumber: 1.8 Consensus size: 243
8168044 GCTATTATTA
*
8168054 TATTATATATAAAATATAATAAAAGAAATAGTAATTACATGATATTATAATGTTTAATCATTAAT
1 TATTATATATAAAATACAATAAAAGAAATAGTAATTACATGATATTATAATGTTTAATCATTAAT
* *
8168119 GCATATATAAACTATTAATATATTATATACTACATGATATGATATAATATTATATAATAAAGTAA
66 GCATATATAAACTATTAATATATTATATACTACATGATATGATATAATATAACATAATAAAGTAA
*
8168184 GAGAGCTAACTTTCAAATGTATGAAAAGTATAGAGACTTAGAACATATTTCAAC-CAGTATAATA
131 GAGAGCTAACTTTCAAATGTACG-AAAGTATAGAGACTTAGAACATATTTCAACACAGTATAATA
8168248 ATAAACAATAATAATTGATATATAATGTACTAATATTTTATATAACTAT
195 ATAAACAATAATAATTGATATATAATGTACTAATATTTTATATAACTAT
* * * *
8168297 TATTATATTATAGATTACAATAAAAGATATAGT-ATTACATGATATTATAATGTTTAATCATTTA
1 TATTATA-TATAAAATACAATAAAAGAAATAGTAATTACATGATATTATAATGTTTAATCATTAA
* * *
8168361 TGCATATATATAAACTATTAATATATTATATACTATATGATATGATATGATATAACATTATAATA
65 TGC--ATATATAAACTATTAATATATTATATACTACATGATATGATATAATATAACATAATAA-A
* * * * * *
8168426 G-AAG-G-GCTAACTTTCAAATTTACGAAAGTATAGGGGCTTCGAGCATATTTCAACTATAGTAT
127 GTAAGAGAGCTAACTTTCAAATGTACGAAAGTATAGAGACTTAGAACATATTTCAAC-ACAGTAT
8168488 AATAAT
191 AATAAT
8168494 TAATATATAA
Statistics
Matches: 174, Mismatches: 17, Indels: 11
0.86 0.08 0.05
Matches are distributed among these distances:
242 26 0.15
243 57 0.33
244 33 0.19
245 56 0.32
246 2 0.01
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (243 bp):
TATTATATATAAAATACAATAAAAGAAATAGTAATTACATGATATTATAATGTTTAATCATTAAT
GCATATATAAACTATTAATATATTATATACTACATGATATGATATAATATAACATAATAAAGTAA
GAGAGCTAACTTTCAAATGTACGAAAGTATAGAGACTTAGAACATATTTCAACACAGTATAATAA
TAAACAATAATAATTGATATATAATGTACTAATATTTTATATAACTAT
Found at i:8178765 original size:2 final size:2
Alignment explanation
Indices: 8178760--8178786 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8178750 CATACGTGTG
8178760 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8178787 CTACATCCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8179052 original size:2 final size:2
Alignment explanation
Indices: 8179047--8179074 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8179037 TTTTTTTTGA
8179047 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8179075 TTGCATTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8186424 original size:3 final size:3
Alignment explanation
Indices: 8186416--8186449 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
8186406 TAATTTATAT
8186416 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
8186450 AGCAAATGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:8189476 original size:13 final size:13
Alignment explanation
Indices: 8189458--8189610 Score: 60
Period size: 13 Copynumber: 11.8 Consensus size: 13
8189448 GGTCAGTCTG
8189458 TTATGTATGTATA
1 TTATGTATGTATA
8189471 TTATGTATGT-TA
1 TTATGTATGTATA
8189483 TGCATAT-TACT-T-T-
1 T---TATGTA-TGTATA
* *
8189496 TTATGTATGTTTG
1 TTATGTATGTATA
8189509 TTATGTATGTATA
1 TTATGTATGTATA
8189522 TTATGTATG-ATA
1 TTATGTATGTATA
*
8189534 TGCATAT-TACTGTCTA
1 T---TATGTA-TGTATA
8189550 TGTATGTCA-GT-TA
1 T-TATGT-ATGTATA
*
8189563 TGTATGTATAT-TA
1 T-TATGTATGTATA
*
8189576 TCATGTATGTATA
1 TTATGTATGTATA
*
8189589 TTACAGT-T-TATA
1 TTA-TGTATGTATA
8189601 TTATGTATGT
1 TTATGTATGT
8189611 GCAGTGTTTT
Statistics
Matches: 110, Mismatches: 10, Indels: 40
0.69 0.06 0.25
Matches are distributed among these distances:
10 4 0.04
11 5 0.05
12 24 0.22
13 50 0.45
14 13 0.12
15 10 0.09
16 4 0.04
ACGTcount: A:0.27, C:0.05, G:0.16, T:0.52
Consensus pattern (13 bp):
TTATGTATGTATA
Found at i:8189477 original size:9 final size:9
Alignment explanation
Indices: 8189463--8189576 Score: 60
Period size: 9 Copynumber: 12.3 Consensus size: 9
8189453 GTCTGTTATG
8189463 TATGTATAT
1 TATGTATAT
*
8189472 TATGTATGT
1 TATGTATAT
*
8189481 TATGCATAT
1 TATGTATAT
8189490 TACT-T-T-T
1 TA-TGTATAT
*
8189497 TATGTATGT
1 TATGTATAT
8189506 T-TGT-TAT
1 TATGTATAT
8189513 GTATGTATAT
1 -TATGTATAT
8189523 TATGTATGA-
1 TATGTAT-AT
*
8189532 TATGCATAT
1 TATGTATAT
*
8189541 TACTGTCTAT
1 TA-TGTATAT
8189551 GTATGTCAGTTAT
1 -TATGT-A--TAT
8189564 GTATGTATAT
1 -TATGTATAT
8189574 TAT
1 TAT
8189577 CATGTATGTA
Statistics
Matches: 82, Mismatches: 9, Indels: 28
0.69 0.08 0.24
Matches are distributed among these distances:
6 1 0.01
7 6 0.07
8 7 0.09
9 40 0.49
10 16 0.20
11 2 0.02
12 1 0.01
13 9 0.11
ACGTcount: A:0.26, C:0.05, G:0.16, T:0.53
Consensus pattern (9 bp):
TATGTATAT
Found at i:8189536 original size:51 final size:50
Alignment explanation
Indices: 8189453--8189592 Score: 201
Period size: 51 Copynumber: 2.8 Consensus size: 50
8189443 TGAAAGGTCA
* *
8189453 GTCTGTTATGTATGTATATTATGTATGTTATGCATATTACTTTTTATGTAT
1 GTCTGTTATGTATGTATATTATGTATG-TATGCATATTACTGTCTATGTAT
*
8189504 GTTTGTTATGTATGTATATTATGTATGATATGCATATTACTGTCTATGTAT
1 GTCTGTTATGTATGTATATTATGTATG-TATGCATATTACTGTCTATGTAT
* * *
8189555 GTCAGTTATGTATGTATATTAT-CATGTATGTATATTAC
1 GTCTGTTATGTATGTATATTATGTATGTATGCATATTAC
8189593 AGTTTATATT
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
49 11 0.14
50 3 0.04
51 67 0.83
ACGTcount: A:0.26, C:0.06, G:0.16, T:0.51
Consensus pattern (50 bp):
GTCTGTTATGTATGTATATTATGTATGTATGCATATTACTGTCTATGTAT
Found at i:8189905 original size:42 final size:42
Alignment explanation
Indices: 8189858--8189943 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
8189848 TTATGATAAT
8189858 TCATCATTCATAGCAATGATTAGTCATAGTAGAAAAATAGGG
1 TCATCATTCATAGCAATGATTAGTCATAGTAGAAAAATAGGG
8189900 TCATCATTCATAGCAATGATTAGTCATAGTAGAAAAATAGGG
1 TCATCATTCATAGCAATGATTAGTCATAGTAGAAAAATAGGG
8189942 TC
1 TC
8189944 CATACATGTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.29
Consensus pattern (42 bp):
TCATCATTCATAGCAATGATTAGTCATAGTAGAAAAATAGGG
Found at i:8190569 original size:18 final size:18
Alignment explanation
Indices: 8190546--8190583 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
8190536 TATGATGTTT
8190546 AAAAGATTAGAAGAATTC
1 AAAAGATTAGAAGAATTC
8190564 AAAAGATTAGAAGAATTC
1 AAAAGATTAGAAGAATTC
8190582 AA
1 AA
8190584 GACTGCTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.58, C:0.05, G:0.16, T:0.21
Consensus pattern (18 bp):
AAAAGATTAGAAGAATTC
Found at i:8191099 original size:56 final size:56
Alignment explanation
Indices: 8191013--8191125 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
8191003 TCAGGGACAT
8191013 TGGTCCTATCTATCAACCAATGTGCCAAACAATGAGAAACACTAGTGGCTAATTTA
1 TGGTCCTATCTATCAACCAATGTGCCAAACAATGAGAAACACTAGTGGCTAATTTA
8191069 TGGTCCTATCTATCAACCAATGTGCCAAACAATGAGAAACACTAGTGGCTAATTTA
1 TGGTCCTATCTATCAACCAATGTGCCAAACAATGAGAAACACTAGTGGCTAATTTA
8191125 T
1 T
8191126 AGGTAGAAGA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.27
Consensus pattern (56 bp):
TGGTCCTATCTATCAACCAATGTGCCAAACAATGAGAAACACTAGTGGCTAATTTA
Found at i:8196303 original size:2 final size:2
Alignment explanation
Indices: 8196296--8196350 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
8196286 AAAATTTTAC
8196296 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8196338 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
8196351 CATTTGATAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8196896 original size:18 final size:18
Alignment explanation
Indices: 8196875--8196926 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
8196865 CTACAAATTA
**
8196875 AATTAAAATTTAAAACTT
1 AATTAAAATTTAAAAAGT
* *
8196893 AATTAAGAAGTAAAAAAGT
1 AATTAA-AATTTAAAAAGT
*
8196912 AATTTAAATTTAAAA
1 AATTAAAATTTAAAA
8196927 TCAAAATACA
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
18 13 0.50
19 13 0.50
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.33
Consensus pattern (18 bp):
AATTAAAATTTAAAAAGT
Found at i:8197100 original size:11 final size:12
Alignment explanation
Indices: 8197076--8197100 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8197066 GAAGTATAGT
8197076 AAAATATTTAAA
1 AAAATATTTAAA
8197088 AAAATATTTAAA
1 AAAATATTTAAA
8197100 A
1 A
8197101 TAAAGACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATATTTAAA
Found at i:8205245 original size:3 final size:3
Alignment explanation
Indices: 8205237--8205287 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
8205227 ATTTATTAGC
8205237 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8205285 ATT
1 ATT
8205288 GCCATATTTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:8207288 original size:13 final size:13
Alignment explanation
Indices: 8207270--8207295 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8207260 AAAGAGATTT
8207270 GTTTTCTAGTAAA
1 GTTTTCTAGTAAA
8207283 GTTTTCTAGTAAA
1 GTTTTCTAGTAAA
8207296 AAATTGAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
GTTTTCTAGTAAA
Found at i:8210262 original size:7 final size:7
Alignment explanation
Indices: 8210250--8210290 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
8210240 AAAAGTGATG
8210250 TGAAAAA
1 TGAAAAA
8210257 TGAAAAGA
1 TGAAAA-A
8210265 TG-AAAA
1 TGAAAAA
8210271 TGAAAAA
1 TGAAAAA
8210278 TGAAAAA
1 TGAAAAA
*
8210285 AGAAAA
1 TGAAAA
8210291 TGGAGAGGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 3 0.10
7 25 0.81
8 3 0.10
ACGTcount: A:0.71, C:0.00, G:0.17, T:0.12
Consensus pattern (7 bp):
TGAAAAA
Found at i:8210274 original size:21 final size:20
Alignment explanation
Indices: 8210250--8210292 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
8210240 AAAAGTGATG
*
8210250 TGAAAAATGAAAAGATGAAAA
1 TGAAAAATGAAAA-AAGAAAA
8210271 TGAAAAATGAAAAAAGAAAA
1 TGAAAAATGAAAAAAGAAAA
8210291 TG
1 TG
8210293 GAGAGGCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.67, C:0.00, G:0.19, T:0.14
Consensus pattern (20 bp):
TGAAAAATGAAAAAAGAAAA
Found at i:8211808 original size:132 final size:132
Alignment explanation
Indices: 8211579--8212361 Score: 1341
Period size: 132 Copynumber: 5.9 Consensus size: 132
8211569 TCCCTCGGTT
* *
8211579 GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCTCTGTGGTTACAGTAGAGTACATTGAAGC
1 GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
* * *
8211644 CAGTAATTCTACTTCCCTAGACAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAG
66 CAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAG
*
8211709 CG
131 CA
* *
8211711 GTAGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTAGAGTACATTGAAGC
1 GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
* *
8211776 CAGTAATTCTACTTCCTTGGGCAGCAGCGGAATAGATTGAATATTTCAGATCTTGTCTCCCTAAG
66 CAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAG
8211841 CA
131 CA
* *
8211843 GAAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTATGGTTACAGTGGAGTACATTGAAGC
1 GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
8211908 CAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAG
66 CAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAG
8211973 CA
131 CA
*
8211975 GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTTCCTGTGGTTACAGTGGAGTACATTGAAGC
1 GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
*
8212040 CAGTAATTCTACTTCCCTGGGCAGCAGCAGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAG
66 CAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAG
8212105 CA
131 CA
* * *
8212107 GTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCTCTGTGGTTACAATGGAGTACATTGAAGC
1 GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
8212172 CAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAG
66 CAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAG
8212237 CA
131 CA
* * * *
8212239 GTAGTAGAGCAGATCAAAGATGGCGGATTTTACTTCCCTGTGGTTACAGTGGAGTATATTGAAGC
1 GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
* * **
8212304 CAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTAAAGATACCAGATCTTGTCT
66 CAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCT
8212362 TCCCATACTG
Statistics
Matches: 617, Mismatches: 34, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 617 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
CAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAG
CA
Found at i:8212663 original size:132 final size:132
Alignment explanation
Indices: 8212426--8212663 Score: 338
Period size: 132 Copynumber: 1.8 Consensus size: 132
8212416 GGCGTGAAGT
*
8212426 AGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTATAGTGGAGTAGATTGAAGCCAGTAATTCT
1 AGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTAGATTGAAGCCAGTAATTCT
** * *
8212491 ATCTCCCTGGGTAGCAGTGGAATAGATTGAAGATTACAGATATTATCTCCCTAAGCAATAGTGGA
66 ATCTCCCCCGGTAGCAGTGGAATAGATCGAAGATAACAGATATTATCTCCCTAAGCAATAGTGGA
8212556 GC
131 GC
* * *
8212558 AGATCAAAGATGGTGGATTTTACCTCCCTGAGGTTGCAGTGGAGTATATTGAAGCCAGTAATTCT
1 AGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTAGATTGAAGCCAGTAATTCT
* *
8212623 AT-TCCCCCGGTCGGTAGTGGAATCA-ATCGAAGA-AAGCAGAT
66 ATCTCCCCCGGT-AGCAGTGGAAT-AGATCGAAGATAA-CAGAT
8212664 CTTGTCTTCA
Statistics
Matches: 93, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
131 8 0.09
132 84 0.90
133 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (132 bp):
AGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTAGATTGAAGCCAGTAATTCT
ATCTCCCCCGGTAGCAGTGGAATAGATCGAAGATAACAGATATTATCTCCCTAAGCAATAGTGGA
GC
Found at i:8212739 original size:309 final size:308
Alignment explanation
Indices: 8212117--8212716 Score: 780
Period size: 309 Copynumber: 1.9 Consensus size: 308
8212107 GTAGTGGAGC
* *
8212117 AGATCAAAGATGACAGATTTTACCTCTCTGTGGTTACAATGGAGTACATTGAAGCCAGTAATTCT
1 AGATCAAAGATGACAGATTTTACCTCCCTGAGGTTACAATGGAGTACATTGAAGCCAGTAATTCT
* * * *
8212182 ACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTAGA
66 ACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTACAGATATTATCTCCCTAAGCAATAGTAGA
* *
8212247 GCAGATCAAAGATGGCGGATTTTACTTCCCTGTGGTTACAGTGGAGTATATTGAAGCCAGTAATT
131 GCAGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTATATTGAAGCCAGTAATT
* * * *
8212312 CTACTTCCCTGGGCAGCAGTGGAATAGATTAAAGATACCAGATCTTGTCTTCCCATACTGGTGGC
196 CTACTTCCCCGGGCAGCAGTGGAATAGATCAAAGAAACCAGATCTTGTCTT-CCATACTAGTGGC
* * * **
8212377 GAAGTAGATCGAAGAAAACAGTTCTTGTCTTCATGTCTTGGCGTGAAGT
260 AAAGTAGAGCGAAGAAAACAGATCTTGTCTTCATCACTTGGCGTGAAGT
* * * * *
8212426 AGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTATAGTGGAGTAGATTGAAGCCAGTAATTCT
1 AGATCAAAGATGACAGATTTTACCTCCCTGAGGTTACAATGGAGTACATTGAAGCCAGTAATTCT
* * *
8212491 A-TCTCCCTGGGTAGCAGTGGAATAGATTGAAGATTACAGATATTATCTCCCTAAGCAATAGTGG
66 ACT-TCCCTGGGCAGCAGCGGAATAGATTGAAGATTACAGATATTATCTCCCTAAGCAATAGTAG
* *
8212555 AGCAGATCAAAGATGGTGGATTTTACCTCCCTGAGGTTGCAGTGGAGTATATTGAAGCCAGTAAT
130 AGCAGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTATATTGAAGCCAGTAAT
* * * * * * *
8212620 TCTA-TTCCCCCGGTCGGTAGTGGAATCA-ATCGAAGAAAGCAGATCTTGTCTT-CAT-GTATTG
195 TCTACTT-CCCCGGGCAGCAGTGGAAT-AGATCAAAGAAACCAGATCTTGTCTTCCATACTAGTG
*
8212681 GCATAAAGTAGAGCGAA-AAAAGTAGATCTTGTCTTC
258 GC--AAAGTAGAGCGAAGAAAA-CAGATCTTGTCTTC
8212717 CCACACTGGT
Statistics
Matches: 252, Mismatches: 33, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
306 5 0.02
307 7 0.03
308 26 0.10
309 213 0.85
310 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (308 bp):
AGATCAAAGATGACAGATTTTACCTCCCTGAGGTTACAATGGAGTACATTGAAGCCAGTAATTCT
ACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTACAGATATTATCTCCCTAAGCAATAGTAGA
GCAGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTATATTGAAGCCAGTAATT
CTACTTCCCCGGGCAGCAGTGGAATAGATCAAAGAAACCAGATCTTGTCTTCCATACTAGTGGCA
AAGTAGAGCGAAGAAAACAGATCTTGTCTTCATCACTTGGCGTGAAGT
Found at i:8213994 original size:3 final size:3
Alignment explanation
Indices: 8213986--8214042 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
8213976 ATTTATTAGC
8213986 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8214034 ATT ATT ATT
1 ATT ATT ATT
8214043 GCCATATTTA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:8216325 original size:9 final size:9
Alignment explanation
Indices: 8216311--8216341 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
8216301 GTTAAACGAA
8216311 TCGAGTTAT
1 TCGAGTTAT
*
8216320 TCGAGTTAA
1 TCGAGTTAT
8216329 TCGAGTTAT
1 TCGAGTTAT
8216338 TCGA
1 TCGA
8216342 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:8216412 original size:9 final size:9
Alignment explanation
Indices: 8216398--8216440 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
8216388 GTTTTCAAAT
8216398 TCGAATAAC
1 TCGAATAAC
8216407 TCGAATAAC
1 TCGAATAAC
*
8216416 TCGAATAAT
1 TCGAATAAC
*
8216425 TCGAATAAT
1 TCGAATAAC
8216434 TCGAATA
1 TCGAATA
8216441 TCAAACTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (9 bp):
TCGAATAAC
Found at i:8216517 original size:21 final size:21
Alignment explanation
Indices: 8216476--8216518 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
8216466 ACCCCAAACT
* *
8216476 CTCAAACCTTTTTACTTTTCC
1 CTCAAAACTTTTTACTCTTCC
8216497 CTCAAAAC-TTTTACTCCTTCC
1 CTCAAAACTTTTTACT-CTTCC
8216518 C
1 C
8216519 ACTTTCCCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.21, C:0.37, G:0.00, T:0.42
Consensus pattern (21 bp):
CTCAAAACTTTTTACTCTTCC
Found at i:8216688 original size:30 final size:31
Alignment explanation
Indices: 8216654--8216713 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
8216644 AAACCTTTTA
*
8216654 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
8216684 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
8216714 TCTCACCTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:8221840 original size:2 final size:2
Alignment explanation
Indices: 8221833--8221873 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
8221823 ACATCAAGAC
8221833 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8221874 AAGATATGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8228715 original size:21 final size:22
Alignment explanation
Indices: 8228691--8228731 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
8228681 AACGTCCAGC
*
8228691 AACAAAAAAT-CAAGAAAATGG
1 AACAAAAAATGAAAGAAAATGG
*
8228712 AACAAGAAATGAAAGAAAAT
1 AACAAAAAATGAAAGAAAAT
8228732 AGGCAATAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.68, C:0.07, G:0.15, T:0.10
Consensus pattern (22 bp):
AACAAAAAATGAAAGAAAATGG
Found at i:8229255 original size:43 final size:43
Alignment explanation
Indices: 8229146--8229292 Score: 136
Period size: 43 Copynumber: 3.4 Consensus size: 43
8229136 GATTCGGTTC
* * * * *
8229146 ATCCAATGATGCAC-CCATGTGCCAGTATAATTGCTTCGACTT
1 ATCCGATGATGCACTACAAGTGCCAGTATATTTCCTTCGACTT
* * ** *
8229188 ATTCGATGATGCTCTATGTA-TGCCAGTATGTTTCCTTCGACTT
1 ATCCGATGATGCACTA-CAAGTGCCAGTATATTTCCTTCGACTT
* * * *
8229231 ATCCGATGATGCACTACAAGTGCCAATATATTTCATTTGATTT
1 ATCCGATGATGCACTACAAGTGCCAGTATATTTCCTTCGACTT
*
8229274 ATCCGGTGATGCACTACAA
1 ATCCGATGATGCACTACAA
8229293 TGTCAGATTG
Statistics
Matches: 82, Mismatches: 20, Indels: 5
0.77 0.19 0.05
Matches are distributed among these distances:
42 12 0.15
43 70 0.85
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (43 bp):
ATCCGATGATGCACTACAAGTGCCAGTATATTTCCTTCGACTT
Found at i:8230516 original size:17 final size:18
Alignment explanation
Indices: 8230484--8230517 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8230474 TTTTTAAAAA
8230484 TTTTAAAGAAAAATATAT
1 TTTTAAAGAAAAATATAT
*
8230502 TTTTAAA-AAATATATA
1 TTTTAAAGAAAAATATA
8230518 AAATTAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (18 bp):
TTTTAAAGAAAAATATAT
Found at i:8235811 original size:51 final size:51
Alignment explanation
Indices: 8235751--8235865 Score: 194
Period size: 51 Copynumber: 2.3 Consensus size: 51
8235741 TCCTCTCTAG
*
8235751 TCCTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTCAATT
1 TCCTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTCCAATT
* *
8235802 TCCTCTCAATTTCCTTCTAAAATTCTCTCAAATCCATATTTAATTCCAATT
1 TCCTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTCCAATT
*
8235853 TCCCCTCAATTTC
1 TCCTCTCAATTTC
8235866 ATTTTTTAAA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.28, C:0.30, G:0.00, T:0.42
Consensus pattern (51 bp):
TCCTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTCCAATT
Found at i:8235923 original size:32 final size:28
Alignment explanation
Indices: 8235866--8235930 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 28
8235856 CCTCAATTTC
**
8235866 ATTTTTTAAAATAATTTAAATTTTTTTTAT
1 ATTTTTTAAAATAAAATAAA--TTTTTTAT
8235896 ATTTTTTAAAAATAAAAATAAATTTTTTAT
1 ATTTTTT-AAAAT-AAAATAAATTTTTTAT
8235926 ATTTT
1 ATTTT
8235931 CATCAATGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 20 0.65
31 5 0.16
32 6 0.19
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (28 bp):
ATTTTTTAAAATAAAATAAATTTTTTAT
Found at i:8237024 original size:7 final size:7
Alignment explanation
Indices: 8237012--8237036 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8237002 AGTCGATTGA
8237012 TATTTAG
1 TATTTAG
8237019 TATTTAG
1 TATTTAG
8237026 TATTTAG
1 TATTTAG
8237033 TATT
1 TATT
8237037 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:8237714 original size:18 final size:18
Alignment explanation
Indices: 8237688--8237722 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8237678 AGGTGTGTTT
* *
8237688 CCTAGCCCTTATATGTAC
1 CCTAACCCTTACATGTAC
8237706 CCTAACCCTTACATGTA
1 CCTAACCCTTACATGTA
8237723 TCCTTTTCCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.34, G:0.09, T:0.31
Consensus pattern (18 bp):
CCTAACCCTTACATGTAC
Found at i:8238425 original size:29 final size:29
Alignment explanation
Indices: 8238392--8238637 Score: 404
Period size: 29 Copynumber: 8.4 Consensus size: 29
8238382 ACCAAGACCG
* *
8238392 CTAA-CTAAGTTAATTAAGAACCCTAAACC
1 CTAACCTAATTTAATTAAAAACCCT-AACC
8238421 CTAACCTAATTTAATTAAAAACCCTAAACC
1 CTAACCTAATTTAATTAAAAACCCT-AACC
8238451 CTAACCTAATTTAATTAAAAACCCTAACC
1 CTAACCTAATTTAATTAAAAACCCTAACC
*
8238480 CTAACATAATTTAATTAAAAACCCTAACC
1 CTAACCTAATTTAATTAAAAACCCTAACC
*
8238509 CTAAACTAATTTAATTAAAAACCCTAACC
1 CTAACCTAATTTAATTAAAAACCCTAACC
8238538 CTAACCTAATTTAATTAAAAACCCTAAACC
1 CTAACCTAATTTAATTAAAAACCCT-AACC
8238568 CTAACCTAATTTAATTAAAAACCCTAACC
1 CTAACCTAATTTAATTAAAAACCCTAACC
*
8238597 CTAACCTAATTTAATTAAAAACCCTAACA
1 CTAACCTAATTTAATTAAAAACCCTAACC
*
8238626 TTAACCTAATTT
1 CTAACCTAATTT
8238638 TACATAATTT
Statistics
Matches: 207, Mismatches: 8, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
29 130 0.63
30 77 0.37
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.28
Consensus pattern (29 bp):
CTAACCTAATTTAATTAAAAACCCTAACC
Found at i:8238455 original size:59 final size:59
Alignment explanation
Indices: 8238392--8238637 Score: 408
Period size: 59 Copynumber: 4.2 Consensus size: 59
8238382 ACCAAGACCG
* *
8238392 CTAA-CTAAGTTAATTAAGAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAAACC
1 CTAACCTAATTTAATTAAAAACCCT-AACCCTAACCTAATTTAATTAAAAACCCTAAACC
*
8238451 CTAACCTAATTTAATTAAAAACCCTAACCCTAACATAATTTAATTAAAAACCCT-AACC
1 CTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACC
*
8238509 CTAAACTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACC
1 CTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACC
*
8238568 CTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT-AACA
1 CTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACC
*
8238626 TTAACCTAATTT
1 CTAACCTAATTT
8238638 TACATAATTT
Statistics
Matches: 177, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
58 70 0.40
59 89 0.50
60 18 0.10
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.28
Consensus pattern (59 bp):
CTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACC
Found at i:8238528 original size:88 final size:87
Alignment explanation
Indices: 8238392--8238637 Score: 404
Period size: 88 Copynumber: 2.8 Consensus size: 87
8238382 ACCAAGACCG
* *
8238392 CTAACTAAGTTAATTAAGAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACC
1 CTAACTAATTTAATTAAAAACCCT-AACCCTAACCTAATTTAATTAAAAACCCT-AACCCTAACC
8238457 TAATTTAATTAAAAACCCT-AACC
64 TAATTTAATTAAAAACCCTAAACC
*
8238480 CTAACATAATTTAATTAAAAACCCTAACCCTAAACTAATTTAATTAAAAACCCTAACCCTAACCT
1 CTAAC-TAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCT
8238545 AATTTAATTAAAAACCCTAAACC
65 AATTTAATTAAAAACCCTAAACC
**
8238568 CTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACATTAACCT
1 CTAA-CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCT
8238633 AATTT
65 AATTT
8238638 TACATAATTT
Statistics
Matches: 149, Mismatches: 6, Indels: 6
0.93 0.04 0.04
Matches are distributed among these distances:
87 29 0.19
88 102 0.68
89 18 0.12
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.28
Consensus pattern (87 bp):
CTAACTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTA
ATTTAATTAAAAACCCTAAACC
Found at i:8238566 original size:117 final size:118
Alignment explanation
Indices: 8238394--8238624 Score: 428
Period size: 117 Copynumber: 2.0 Consensus size: 118
8238384 CAAGACCGCT
*
8238394 AACTAAGTTAATTAAGAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTA
1 AACTAAGTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTA
8238459 ATTTAATTAAAAACCCTAACCCTAACATAATTTAATTAAAAACCCTAACCCTA
66 ATTTAATTAAAAACCCTAACCCTAACATAATTTAATTAAAAACCCTAACCCTA
*
8238512 AACTAATTTAATTAAAAACCCT-AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTA
1 AACTAAGTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTA
*
8238576 ATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAC
66 ATTTAATTAAAAACCCTAACCCTAACATAATTTAATTAAAAACCCTAAC
8238625 ATTAACCTAA
Statistics
Matches: 110, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
117 90 0.82
118 20 0.18
ACGTcount: A:0.47, C:0.26, G:0.01, T:0.27
Consensus pattern (118 bp):
AACTAAGTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTA
ATTTAATTAAAAACCCTAACCCTAACATAATTTAATTAAAAACCCTAACCCTA
Found at i:8238728 original size:55 final size:55
Alignment explanation
Indices: 8238632--8238809 Score: 322
Period size: 55 Copynumber: 3.3 Consensus size: 55
8238622 AACATTAACC
*
8238632 TAATTTTACATAATTTGATAGTTTT-CTAACCATTAACACAATTTTTGGACTTAA
1 TAATTTTACATAATTTGATAATTTTACTAACCATTAACACAATTTTTGGACTTAA
* *
8238686 TAGTTTTACATAATTTGATACTTTTACTAACCATTAACACAATTTTTGGACTTAA
1 TAATTTTACATAATTTGATAATTTTACTAACCATTAACACAATTTTTGGACTTAA
8238741 TAATTTTACATAATTTGATAATTTTACTAACCATTAACACAATTTTTGGACTTAA
1 TAATTTTACATAATTTGATAATTTTACTAACCATTAACACAATTTTTGGACTTAA
8238796 TAATTTTACATAAT
1 TAATTTTACATAAT
8238810 GTTAGATTTG
Statistics
Matches: 119, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
54 23 0.19
55 96 0.81
ACGTcount: A:0.37, C:0.13, G:0.06, T:0.44
Consensus pattern (55 bp):
TAATTTTACATAATTTGATAATTTTACTAACCATTAACACAATTTTTGGACTTAA
Found at i:8242562 original size:23 final size:23
Alignment explanation
Indices: 8242536--8242589 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
8242526 CAAACTAATC
8242536 CTCTCAAATTTCC-TCTC-AATTT
1 CTCTCAAATTTCCTTC-CAAATTT
8242558 GCTCTCAAA-TTCCTTCCAAATTT
1 -CTCTCAAATTTCCTTCCAAATTT
8242581 CTCTCAAAT
1 CTCTCAAAT
8242590 CCATATTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
22 13 0.46
23 15 0.54
ACGTcount: A:0.26, C:0.31, G:0.02, T:0.41
Consensus pattern (23 bp):
CTCTCAAATTTCCTTCCAAATTT
Found at i:8242588 original size:11 final size:12
Alignment explanation
Indices: 8242534--8242589 Score: 66
Period size: 11 Copynumber: 4.9 Consensus size: 12
8242524 CACAAACTAA
8242534 TCCTCTCAAATT
1 TCCTCTCAAATT
8242546 TCCTCTC-AATT
1 TCCTCTCAAATT
*
8242557 TGCTCTCAAA-T
1 TCCTCTCAAATT
8242568 TCCT-TCCAAATT
1 TCCTCT-CAAATT
8242580 T-CTCTCAAAT
1 TCCTCTCAAAT
8242590 CCATATTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
10 1 0.03
11 25 0.66
12 12 0.32
ACGTcount: A:0.25, C:0.32, G:0.02, T:0.41
Consensus pattern (12 bp):
TCCTCTCAAATT
Found at i:8242669 original size:10 final size:10
Alignment explanation
Indices: 8242644--8242684 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
8242634 CTTAACTCCC
*
8242644 TTTTTTAAAA
1 TTTTTTTAAA
*
8242654 TATTTTTTAAT
1 T-TTTTTTAAA
8242665 TTTTTTTAAA
1 TTTTTTTAAA
8242675 TTTTTTTAAA
1 TTTTTTTAAA
8242685 CCGTAAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
10 19 0.70
11 8 0.30
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTTTTTAAA
Found at i:8242670 original size:11 final size:11
Alignment explanation
Indices: 8242644--8242681 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
8242634 CTTAACTCCC
*
8242644 TTTTTTAAAAT
1 TTTTTTTAAAT
*
8242655 ATTTTTT-AAT
1 TTTTTTTAAAT
8242665 TTTTTTTAAAT
1 TTTTTTTAAAT
8242676 TTTTTT
1 TTTTTT
8242682 AAACCGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTTTTAAAT
Found at i:8245036 original size:68 final size:66
Alignment explanation
Indices: 8244954--8245952 Score: 820
Period size: 68 Copynumber: 15.1 Consensus size: 66
8244944 TTGGGTTATT
* * * *
8244954 ACTTAAAAACCCTAAACCCTTAAAATTAAAAACCCTAAACCTTTAACTTAAAAATCCTGAACTAA
1 ACTTAAAAACCCTAAACCCTT-AACTTAAAAACCCTAAACCTTTAACTTAAAAACCCTAAAC--C
8245019 TTTA
63 TTTA
* * * *
8245023 A-TTAAAAACCCTAAACCCTTAAAATTAAAAACCCTAAACCCTTAACTTAAAAA-CCTTAACCCT
1 ACTTAAAAACCCTAAACCCTT-AACTTAAAAACCCTAAACCTTTAACTTAAAAACCCTAAACCTT
8245086 TA
65 TA
* * * * *
8245088 ACTTAAAAACCCT-AACCCTTAAATTAAAAACCTTAAACCCTTAAAATTAAAAACCCTAAACCCT
1 ACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTAAA-CCTTTAACTTAAAAACCCTAAACCTT
8245152 TA
65 TA
** * **
8245154 ACTT-AAAACCCTAAACTAATTTAA-TTAAAAACCCTAAACCCTTAAAAATAAAAACCCTAAACC
1 ACTTAAAAACCCTAAAC--CCTTAACTTAAAAACCCTAAA-CCTTTAACTTAAAAACCCTAAACC
*
8245217 CTTA
63 TTTA
* * * *
8245221 ACTTTAAAACCCT-AACCCTTAACTTCAAAACCCTAAACTAATTTAA-TTAAAAATCCTAAACCC
1 ACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTAAAC--CTTTAACTTAAAAACCCTAAA-CC
*
8245284 TTAA
63 TTTA
* * * * * * *
8245288 AATTTAAAACTCTAACCCCTTAACTTAAAAAATCCTAAACTAATTTAA-TTAAAAACCCTGAACC
1 ACTTAAAAACCCTAAACCCTTAACTT-AAAAACCCTAAAC--CTTTAACTTAAAAACCCT-AAAC
*
8245352 CTTAA
62 CTTTA
* * *
8245357 ACTTAAAAACCCTAACCCCTTAACTTAAAAACCCTAAACTAATTTAA-TTAAAAATCCTAAACCC
1 ACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTAAAC--CTTTAACTTAAAAACCCTAAA-CC
*
8245421 TTAA
63 TTTA
* * * *
8245425 AATTAAAAACCCTAACCCCTTAACTTAAAAACCCTAAACTAATTTAA-TT-AAAACCATAAACCC
1 ACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTAAAC--CTTTAACTTAAAAACCCTAAA-CC
*
8245488 TTAA
63 TTTA
* *
8245492 ACTTAAAAACCCTAAAGCCTTAAACTTAAAAACCCT-AACTAATTTAA-TTAAAAACCCTAAACC
1 ACTTAAAAACCCTAAACCCTT-AACTTAAAAACCCTAAAC--CTTTAACTTAAAAACCCTAAACC
*
8245555 CTTA
63 TTTA
* * * *
8245559 ACTTAAAAACCCT-AACCCTCAACTTAAAAA-CCTTAACCCTTAACTTAAAAACCCTAAACTAAT
1 ACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTAAACCTTTAACTTAAAAACCCTAAAC--CT
8245622 TTA
64 TTA
* * * * *
8245625 A-TTAAAAACCTTAAACCCTTAAAATTAAAAACCATAAACCCTTAACTT-AAAACCCTAAACTAA
1 ACTTAAAAACCCTAAACCCTT-AACTTAAAAACCCTAAACCTTTAACTTAAAAACCCTAAAC--C
8245688 TTTA
63 TTTA
* * *
8245692 A-TT-AAAACCCTAAACTCTTAAACTTAAAAACCCTAACCCCTTAACTCT--AAA--CT-AA--T
1 ACTTAAAAACCCTAAACCCTT-AACTTAAAAACCCTAAACCTTTAACT-TAAAAACCCTAAACCT
8245748 TTA
64 TTA
* * *
8245751 A-TTAAAAACCCTAAACCCTTAAACTTAAAAACCCTAACCCCTTAACTTAAAAACCCTAAACTAA
1 ACTTAAAAACCCTAAACCCTT-AACTTAAAAACCCTAAACCTTTAACTTAAAAACCCTAAAC--C
8245815 TTTA
63 TTTA
* * * * *
8245819 A-TTAAAAACCCTAAACCCTTAACTTAAAAACTCT-AACCCTCAACTTAAAAA-CCTTAACCCTT
1 ACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTAAACCTTTAACTTAAAAACCCTAAACCTTT
8245881 A
66 A
* * ** ** * *
8245882 ACTTAAAAACCCTTAACCCTTAACTTTAAAACTTTAAA-CTAGAACTTAAAAACCAT-AACCCTT
1 ACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTAAACCTTTAACTTAAAAACCCTAAACCTTT
8245945 A
66 A
8245946 ACTTAAA
1 ACTTAAA
8245953 TTTATTTGAT
Statistics
Matches: 818, Mismatches: 74, Indels: 81
0.84 0.08 0.08
Matches are distributed among these distances:
59 8 0.01
60 42 0.05
61 3 0.00
63 12 0.01
64 94 0.11
65 69 0.08
66 125 0.15
67 184 0.22
68 220 0.27
69 59 0.07
70 2 0.00
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.26
Consensus pattern (66 bp):
ACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTAAACCTTTAACTTAAAAACCCTAAACCTTT
A
Found at i:8245737 original size:22 final size:22
Alignment explanation
Indices: 8244954--8245952 Score: 820
Period size: 23 Copynumber: 45.3 Consensus size: 22
8244944 TTGGGTTATT
8244954 ACTTAAAAACCCTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
* *
8244977 AATTAAAAACCCTAAACCTTTA
1 ACTTAAAAACCCTAAACCCTTA
* * **
8244999 ACTTAAAAATCCTGAACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
8245023 A-TTAAAAACCCTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
*
8245045 AATTAAAAACCCTAAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
*
8245067 ACTTAAAAA-CCTTAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
8245088 ACTTAAAAACCCT-AACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
* *
8245109 AATTAAAAACCTTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
*
8245132 AATTAAAAACCCTAAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
**
8245154 ACTT-AAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
8245177 A-TTAAAAACCCTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
**
8245199 AAATAAAAACCCTAAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
*
8245221 ACTTTAAAACCCT-AACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
* **
8245242 ACTTCAAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
*
8245266 A-TTAAAAATCCTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
* * * *
8245288 AATTTAAAACTCTAACCCCTTA
1 ACTTAAAAACCCTAAACCCTTA
* **
8245310 ACTTAAAAAATCCTAAACTAATTTA
1 ACTT-AAAAACCCTAAAC--CCTTA
*
8245335 A-TTAAAAACCCTGAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
*
8245357 ACTTAAAAACCCTAACCCCTTA
1 ACTTAAAAACCCTAAACCCTTA
**
8245379 ACTTAAAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
*
8245403 A-TTAAAAATCCTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
* *
8245425 AATTAAAAACCCTAACCCCTTA
1 ACTTAAAAACCCTAAACCCTTA
**
8245447 ACTTAAAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
*
8245471 A-TT-AAAACCATAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
*
8245492 ACTTAAAAACCCTAAAGCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
**
8245515 ACTTAAAAACCCT-AACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
8245538 A-TTAAAAACCCTAAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
*
8245559 ACTTAAAAACCCT-AACCCTCA
1 ACTTAAAAACCCTAAACCCTTA
*
8245580 ACTTAAAAA-CCTTAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
**
8245601 ACTTAAAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
*
8245625 A-TTAAAAACCTTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
* *
8245647 AATTAAAAACCATAAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
**
8245669 ACTT-AAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
*
8245692 A-TT-AAAACCCTAAACTCTTAA
1 ACTTAAAAACCCTAAACCCTT-A
*
8245713 ACTTAAAAACCCTAACCCCTTA
1 ACTTAAAAACCCTAAACCCTTA
*
8245735 ACTCT--AAA--CT-AA--TTTA
1 ACT-TAAAAACCCTAAACCCTTA
* * * ** * * *
8245751 ATTAAAAACCCTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTTA
*
8245773 ACTTAAAAACCCTAACCCCTTA
1 ACTTAAAAACCCTAAACCCTTA
**
8245795 ACTTAAAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAAC--CCTTA
8245819 A-TTAAAAACCCTAAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
* *
8245840 ACTTAAAAACTCT-AACCCTCA
1 ACTTAAAAACCCTAAACCCTTA
*
8245861 ACTTAAAAA-CCTTAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
*
8245882 ACTTAAAAACCCTTAACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
* ** *
8245904 ACTTTAAAACTTTAAA--CTAGA
1 ACTTAAAAACCCTAAACCCT-TA
*
8245925 ACTTAAAAACCAT-AACCCTTA
1 ACTTAAAAACCCTAAACCCTTA
8245946 ACTTAAA
1 ACTTAAA
8245953 TTTATTTGAT
Statistics
Matches: 793, Mismatches: 121, Indels: 126
0.76 0.12 0.12
Matches are distributed among these distances:
16 5 0.01
17 2 0.00
18 1 0.00
19 2 0.00
20 14 0.02
21 192 0.24
22 240 0.30
23 304 0.38
24 29 0.04
25 4 0.01
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.26
Consensus pattern (22 bp):
ACTTAAAAACCCTAAACCCTTA
Found at i:8245743 original size:37 final size:37
Alignment explanation
Indices: 8245701--8245772 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
8245691 AATTAAAACC
* *
8245701 CTAAACT-CTTAAACTTAAAAACCCTAACCCCTTAACT
1 CTAAACTAATTAAA-TTAAAAACCCTAAACCCTTAACT
*
8245738 CTAAACTAATTTAATTAAAAACCCTAAACCCTTAA
1 CTAAACTAATTAAATTAAAAACCCTAAACCCTTAA
8245773 ACTTAAAAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 27 0.87
38 4 0.13
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.28
Consensus pattern (37 bp):
CTAAACTAATTAAATTAAAAACCCTAAACCCTTAACT
Found at i:8249334 original size:125 final size:125
Alignment explanation
Indices: 8249108--8249484 Score: 612
Period size: 125 Copynumber: 3.0 Consensus size: 125
8249098 CCCAAACATG
* * * *
8249108 CTACTGTAGCAAAAGCGCGTCCACGATGGCGCGCTTTCACAAATTCTTCTTAAATATCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAACATCCTGC
*
8249173 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
*
8249233 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAACATCCTGC
* *
8249298 TAGAAGCGATTTTATACTATTTGCTCAGAAATGTCAACTCGAAATTATTT-TTTCAGGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
* * *
8249357 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTATCAAACAACATTCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAACATCCTGC
* * * *
8249422 TAGAAGCGATTTTCTACTATTTGATCAAAAACGTCAACTCGAAATTATTTCTTCTAGGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
8249482 CTA
1 CTA
8249485 AAAAGCCTGA
Statistics
Matches: 234, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
124 114 0.49
125 120 0.51
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAACATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
Found at i:8257891 original size:68 final size:68
Alignment explanation
Indices: 8257782--8257956 Score: 217
Period size: 68 Copynumber: 2.6 Consensus size: 68
8257772 GAGGTTTAAT
* * ** *
8257782 GTGTAAGACTAAAGCTC-AGCTATGAAAACCAATAGAGTCCGCCAAGACATTAAATATGGGGTTA
1 GTGTAAGACCATAGCTCGA-CTATGGCAACCAATAGAGTCCGCCAAGACATTAAACATGGGGTTA
*
8257846 CGAG
65 CAAG
* * * *
8257850 GTGTAAGACCATAGCTCGACTATGGCAACCCATAGAGTCCGCCAGGACATTAAACATGGTGTTGC
1 GTGTAAGACCATAGCTCGACTATGGCAACCAATAGAGTCCGCCAAGACATTAAACATGGGGTTAC
8257915 AAG
66 AAG
* * *
8257918 ATGTAAGACCATATCTCGACTATGGCAACCAATACAGTC
1 GTGTAAGACCATAGCTCGACTATGGCAACCAATAGAGTC
8257957 TACTAGGATG
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
68 91 0.99
69 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (68 bp):
GTGTAAGACCATAGCTCGACTATGGCAACCAATAGAGTCCGCCAAGACATTAAACATGGGGTTAC
AAG
Found at i:8257991 original size:68 final size:68
Alignment explanation
Indices: 8257782--8258000 Score: 194
Period size: 68 Copynumber: 3.2 Consensus size: 68
8257772 GAGGTTTAAT
* * ** * * * * * *
8257782 GTGTAAGACTAAAGCTC-AGCTATGAAAACCAATAGAGTCCGCCAAGACATTAAATATGGGGTTA
1 GTGTAAGACCATAGCTCGA-CTATGGCAACCAATACAGTCCACCAGGACATTAAACATGGTGTTG
*
8257846 CGAG
65 CAAG
* * *
8257850 GTGTAAGACCATAGCTCGACTATGGCAACCCATAGAGTCCGCCAGGACATTAAACATGGTGTTGC
1 GTGTAAGACCATAGCTCGACTATGGCAACCAATACAGTCCACCAGGACATTAAACATGGTGTTGC
8257915 AAG
66 AAG
* * * * *
8257918 ATGTAAGACCATATCTCGACTATGGCAACCAATACAGTCTACTAGGATGA-TAAACATGG-GTT-
1 GTGTAAGACCATAGCTCGACTATGGCAACCAATACAGTCCACCAGGA-CATTAAACATGGTGTTG
*
8257980 CAGG
65 CAAG
8257984 TTGTGTAAGACCATAGC
1 --GTGTAAGACCATAGC
8258001 GTCAGGTGAA
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
66 3 0.02
67 3 0.02
68 118 0.94
69 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.22
Consensus pattern (68 bp):
GTGTAAGACCATAGCTCGACTATGGCAACCAATACAGTCCACCAGGACATTAAACATGGTGTTGC
AAG
Found at i:8258937 original size:15 final size:14
Alignment explanation
Indices: 8258919--8258948 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8258909 AATTGAATAC
8258919 ATATATA-TTAAAT
1 ATATATATTTAAAT
8258932 ATATATATTTAAAT
1 ATATATATTTAAAT
8258946 ATA
1 ATA
8258949 ATAAGCTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATATATATTTAAAT
Found at i:8259357 original size:10 final size:10
Alignment explanation
Indices: 8259324--8259368 Score: 56
Period size: 10 Copynumber: 4.6 Consensus size: 10
8259314 TAGCATAACC
8259324 ATAAAAATAT
1 ATAAAAATAT
* *
8259334 ATATATATAT
1 ATAAAAATAT
*
8259344 ATAAATATAT
1 ATAAAAATAT
8259354 ATAAAAAT-T
1 ATAAAAATAT
8259363 ATAAAA
1 ATAAAA
8259369 TTTCCTGGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
9 7 0.23
10 24 0.77
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
ATAAAAATAT
Found at i:8260193 original size:41 final size:41
Alignment explanation
Indices: 8260119--8260210 Score: 130
Period size: 41 Copynumber: 2.2 Consensus size: 41
8260109 ACCGGCTTTT
* *
8260119 AGCCTGCTAGACCTATAGTCCGAAATGTATCACCAGCATTA
1 AGCCTGCTAGACCTAAAGTCCGAAATATATCACCAGCATTA
* * * *
8260160 AGCCTGCTAGACGTAAAGTCTGAATTATTTCACCAGCATTA
1 AGCCTGCTAGACCTAAAGTCCGAAATATATCACCAGCATTA
8260201 AGCCTGCTAG
1 AGCCTGCTAG
8260211 GCACATAGCC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (41 bp):
AGCCTGCTAGACCTAAAGTCCGAAATATATCACCAGCATTA
Found at i:8260224 original size:41 final size:41
Alignment explanation
Indices: 8260148--8260225 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
8260138 CCGAAATGTA
** *
8260148 TCACCAGCATTAAGCCTGCTAGACGTAAAGTCTGAATTATT
1 TCACCAGCATTAAGCCTGCTAGACACAAAGCCTGAATTATT
* *
8260189 TCACCAGCATTAAGCCTGCTAGGCACATAGCCTGAAT
1 TCACCAGCATTAAGCCTGCTAGACACAAAGCCTGAAT
8260226 AACTCAAATA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (41 bp):
TCACCAGCATTAAGCCTGCTAGACACAAAGCCTGAATTATT
Found at i:8260806 original size:2 final size:2
Alignment explanation
Indices: 8260799--8260848 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
8260789 ATAGATTTCC
8260799 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8260841 AT AT AT AT
1 AT AT AT AT
8260849 TCTTAGTTTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8261812 original size:13 final size:13
Alignment explanation
Indices: 8261794--8261818 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8261784 TCAAACTATC
8261794 AAATTTTCACACG
1 AAATTTTCACACG
8261807 AAATTTTCACAC
1 AAATTTTCACAC
8261819 ATATAACTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:8266967 original size:25 final size:25
Alignment explanation
Indices: 8266932--8266983 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
8266922 CTTCAAAGGC
*
8266932 TAGATACATATAAAAAGCTTATAAA
1 TAGATAAATATAAAAAGCTTATAAA
* * *
8266957 TAGATAAATATACAAGGTTTATAAA
1 TAGATAAATATAAAAAGCTTATAAA
8266982 TA
1 TA
8266984 ATCTAAAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.54, C:0.06, G:0.10, T:0.31
Consensus pattern (25 bp):
TAGATAAATATAAAAAGCTTATAAA
Found at i:8267750 original size:19 final size:20
Alignment explanation
Indices: 8267695--8267750 Score: 62
Period size: 18 Copynumber: 2.9 Consensus size: 20
8267685 AATTAATAAA
*
8267695 ATAAAATATTTAATTATTGAT
1 ATAAAATATTTTA-TATTGAT
*
8267716 ATAAGATATTTT-TATT-AT
1 ATAAAATATTTTATATTGAT
*
8267734 TTAAAATATTTTATATT
1 ATAAAATATTTTATATT
8267751 CTTAGAATTG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
18 12 0.40
19 8 0.27
21 10 0.33
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (20 bp):
ATAAAATATTTTATATTGAT
Found at i:8275495 original size:14 final size:15
Alignment explanation
Indices: 8275476--8275506 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
8275466 ATTAAAGATT
8275476 AAGTTAATTAA-TTA
1 AAGTTAATTAAGTTA
8275490 AAGTTAATTAAGTTA
1 AAGTTAATTAAGTTA
8275505 AA
1 AA
8275507 CCATGGTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (15 bp):
AAGTTAATTAAGTTA
Found at i:8282877 original size:10 final size:10
Alignment explanation
Indices: 8282832--8282878 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 10
8282822 AATCTCAATT
*
8282832 TATTTATTTT
1 TATTTATTTA
8282842 TATTTATTTA
1 TATTTATTTA
* *
8282852 T-TTGATTAA
1 TATTTATTTA
*
8282861 AATTTATTTA
1 TATTTATTTA
8282871 TATTTATT
1 TATTTATT
8282879 AAGAATTTAT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
9 6 0.21
10 23 0.79
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (10 bp):
TATTTATTTA
Found at i:8282885 original size:21 final size:19
Alignment explanation
Indices: 8282843--8282889 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
8282833 ATTTATTTTT
8282843 ATTTATTTATTTGATTAAA
1 ATTTATTTATTTGATTAAA
*
8282862 ATTTATTTATATTTATTAAGA
1 ATTTATTTAT-TTGATTAA-A
8282883 ATTTATT
1 ATTTATT
8282890 GTGTGTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 10 0.40
20 7 0.28
21 8 0.32
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (19 bp):
ATTTATTTATTTGATTAAA
Found at i:8284263 original size:21 final size:21
Alignment explanation
Indices: 8284231--8284277 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
8284221 ACTATTTGAA
8284231 ATATACTAAGTACTGATACCT
1 ATATACTAAGTACTGATACCT
*
8284252 ATAT-CTAGAGTATTGATACCT
1 ATATACTA-AGTACTGATACCT
8284273 A-ATAC
1 ATATAC
8284278 CAAATATGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (21 bp):
ATATACTAAGTACTGATACCT
Found at i:8289425 original size:2 final size:2
Alignment explanation
Indices: 8289418--8289447 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8289408 TGCTTAACAA
8289418 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8289448 TCCCTAGCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8295198 original size:2 final size:2
Alignment explanation
Indices: 8295193--8295218 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8295183 TTCTTTGCAA
8295193 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8295219 TTCCAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8303578 original size:68 final size:68
Alignment explanation
Indices: 8303444--8303582 Score: 235
Period size: 68 Copynumber: 2.0 Consensus size: 68
8303434 TGAAGGCAAA
8303444 AGGCATGATTTATAAGTGAAATATCAATTGTTTTTTAAGGAAGGAAATGCTTAATTGGACATATC
1 AGGCATGATTTATAAGTGAAATATCAATTGTTTTTT-A--AAGGAAATGCTTAATTGGACATATC
8303509 ATTAAT
63 ATTAAT
8303515 AGGCATGATTTATAAGGTGAAATATCAATTGTTTTTT-AAGGAAATGCTTAATTGGACATATCAT
1 AGGCATGATTTATAA-GTGAAATATCAATTGTTTTTTAAAGGAAATGCTTAATTGGACATATCAT
8303579 TAAT
65 TAAT
8303583 TTAGAATCTG
Statistics
Matches: 67, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
68 31 0.46
71 15 0.22
72 21 0.31
ACGTcount: A:0.37, C:0.07, G:0.18, T:0.37
Consensus pattern (68 bp):
AGGCATGATTTATAAGTGAAATATCAATTGTTTTTTAAAGGAAATGCTTAATTGGACATATCATT
AAT
Found at i:8306801 original size:21 final size:21
Alignment explanation
Indices: 8306776--8306815 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
8306766 ATCAAATAAA
*
8306776 TTTA-TTCGATTCGACTCGAAT
1 TTTATTTC-ATTCAACTCGAAT
8306797 TTTATTTCATTCAACTCGA
1 TTTATTTCATTCAACTCGA
8306816 TTCAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.25, C:0.20, G:0.10, T:0.45
Consensus pattern (21 bp):
TTTATTTCATTCAACTCGAAT
Found at i:8306935 original size:4 final size:4
Alignment explanation
Indices: 8306926--8307084 Score: 318
Period size: 4 Copynumber: 39.8 Consensus size: 4
8306916 AATATAATAA
8306926 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
8306974 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
8307022 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
8307070 ATGT ATGT ATGT ATG
1 ATGT ATGT ATGT ATG
8307085 AAAACAGAAG
Statistics
Matches: 155, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 155 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:8307537 original size:14 final size:14
Alignment explanation
Indices: 8307501--8307538 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
8307491 TCAGAACCCC
8307501 AAACCTTGAA-CTT
1 AAACCTTGAACCTT
*
8307514 AAACCCTGAACCTT
1 AAACCTTGAACCTT
*
8307528 AAATCTTGAAC
1 AAACCTTGAAC
8307539 TCCAAATCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.39, C:0.26, G:0.08, T:0.26
Consensus pattern (14 bp):
AAACCTTGAACCTT
Found at i:8315503 original size:204 final size:207
Alignment explanation
Indices: 8315129--8315769 Score: 921
Period size: 218 Copynumber: 3.0 Consensus size: 207
8315119 ATAACTTATG
* * *
8315129 TTTATTTTATTTATTTTTACTATATTAGTGACATTTTTATTTATGTAAAATC-ATATTTTAATTT
1 TTTATTTTATTTATTTTTATTATATTAGTAACATTTTTATTTATCTAAAATCAAT-TTTTAATTT
* *
8315193 AACTATATTTAGTAATTATTTTACATGTTTTTATTGTGAAAAAATAAGTATCGTATGCATTTTCA
65 AA-TATATTTAGTAATTATTTTACATGTTTTTATTGTG-AAAAATAAGTATCATATGCATTTTGA
* * *
8315258 TATTTTCATTTTCGTTTAACAAACATGATTTTTTCAATTTTTAAAATTAAAGATTCAAAATTATT
128 TATTTTCATTTTCATTTAACAAACATGATTTTTTTAATTTTTAAAATTAAAGAATCAAAATTATT
8315323 TTTTAAAAAT-AAAA
193 TTTTAAAAATAAAAA
*
8315337 TTTATTTTATTTATTTTTATTGTATTAGTAACATTTTTATTTATCTAAAATCAATTTTTAATTT-
1 TTTATTTTATTTATTTTTATTATATTAGTAACATTTTTATTTATCTAAAATCAATTTTTAATTTA
* ** *
8315401 A-ATATTTAGTAGTTAACTTACATGTTTTTATTGTGAAAAATACGTATCATATGCATTTTGATAT
66 ATATATTTAGTAATTATTTTACATGTTTTTATTGTGAAAAATAAGTATCATATGCATTTTGATAT
*
8315465 TTTCATTTTCATTTAACAAACATGATTTTTTTAATTTTTGAAATTAAAGAATCAAAATTATTTTT
131 TTTCATTTTCATTTAACAAACATGATTTTTTTAATTTTTAAAATTAAAGAATCAAAATTA-TTTT
8315530 TTAAAAACAAAATTAAATAA
195 TT----A-AAAA-TAAA-AA
*
8315550 TTTTATTTTATTTATTTTTATTATATTAGTAACATTTTCATTTATCTAAAATCATATTTTTAATT
1 -TTTATTTTATTTATTTTTATTATATTAGTAACATTTTTATTTATCTAAAATCA-ATTTTTAATT
* *
8315615 TGATTATATTTAGTAATTATTTTATATGTTTTTATTGTGAAAAATAAGTATCATATGCATTTTGA
64 T-AATATATTTAGTAATTATTTTACATGTTTTTATTGTGAAAAATAAGTATCATATGCATTTTGA
* * * *
8315680 TAATTTCATTTTCATTTAACAAACATAATTTTTTCTAATTTTTAAAATTAAAGAATAAAAAATAT
128 TATTTTCATTTTCATTTAACAAACATGATTTTTT-TAATTTTTAAAATTAAAGAATCAAAATTAT
8315745 TTTTTAAAAATAAAAA
192 TTTTTAAAAATAAAAA
8315761 TATTATTTT
1 T-TTATTTT
8315770 TGAAAGACAA
Statistics
Matches: 389, Mismatches: 27, Indels: 31
0.87 0.06 0.07
Matches are distributed among these distances:
204 82 0.21
205 37 0.10
207 1 0.00
208 57 0.15
209 3 0.01
210 5 0.01
211 10 0.03
212 6 0.02
213 6 0.02
214 52 0.13
215 11 0.03
218 93 0.24
219 26 0.07
ACGTcount: A:0.37, C:0.06, G:0.06, T:0.51
Consensus pattern (207 bp):
TTTATTTTATTTATTTTTATTATATTAGTAACATTTTTATTTATCTAAAATCAATTTTTAATTTA
ATATATTTAGTAATTATTTTACATGTTTTTATTGTGAAAAATAAGTATCATATGCATTTTGATAT
TTTCATTTTCATTTAACAAACATGATTTTTTTAATTTTTAAAATTAAAGAATCAAAATTATTTTT
TAAAAATAAAAA
Found at i:8315760 original size:21 final size:22
Alignment explanation
Indices: 8315727--8315776 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
8315717 ATTTTTAAAA
8315727 TTAAAGAATAAAA-AATATTTT
1 TTAAAGAATAAAATAATATTTT
*
8315748 TTAAA-AATAAAAATATTATTTT
1 TTAAAGAAT-AAAATAATATTTT
*
8315770 TGAAAGA
1 TTAAAGA
8315777 CAAATAGATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 3 0.12
21 9 0.38
22 11 0.46
23 1 0.04
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (22 bp):
TTAAAGAATAAAATAATATTTT
Found at i:8315761 original size:19 final size:22
Alignment explanation
Indices: 8315727--8315769 Score: 65
Period size: 19 Copynumber: 2.1 Consensus size: 22
8315717 ATTTTTAAAA
8315727 TTAAAGAATAAAAAATATT-TT
1 TTAAAGAATAAAAAATATTATT
8315748 TTAAA-AAT-AAAAATATTATT
1 TTAAAGAATAAAAAATATTATT
8315768 TT
1 TT
8315770 TGAAAGACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.43
20 7 0.33
21 5 0.24
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
TTAAAGAATAAAAAATATTATT
Found at i:8322375 original size:46 final size:44
Alignment explanation
Indices: 8322321--8322422 Score: 116
Period size: 46 Copynumber: 2.2 Consensus size: 44
8322311 AAAAACTTTA
* *
8322321 AAAATTAATAAAATTATATAATATTTAAATAATGGTACATGAAATAT
1 AAAATTAATAAAATTA-ATAATATATAAATAAT--TACATAAAATAT
*
8322368 -AAATTAATTGTAAAATTAATGATATATAAATAATTACATAAAATAT
1 AAAATTAA---TAAAATTAATAATATATAAATAATTACATAAAATAT
8322414 AAAATTAAT
1 AAAATTAAT
8322423 CGACATATCT
Statistics
Matches: 48, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
44 1 0.02
46 18 0.38
47 7 0.15
48 14 0.29
49 8 0.17
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (44 bp):
AAAATTAATAAAATTAATAATATATAAATAATTACATAAAATAT
Found at i:8322401 original size:48 final size:48
Alignment explanation
Indices: 8322329--8322422 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
8322319 TAAAAATTAA
* *
8322329 TAAAATTATATAATATTTAAATAATGGTACATGAAATAT-AAATTAATTG
1 TAAAATTATATAATATATAAATAAT--TACATAAAATATAAAATTAATTG
*
8322378 TAAAATTA-ATGATATATAAATAATTACATAAAATATAAAATTAAT
1 TAAAATTATATAATATATAAATAATTACATAAAATATAAAATTAAT
8322423 CGACATATCT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
46 11 0.27
47 8 0.20
48 14 0.34
49 8 0.20
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.37
Consensus pattern (48 bp):
TAAAATTATATAATATATAAATAATTACATAAAATATAAAATTAATTG
Found at i:8334505 original size:5 final size:5
Alignment explanation
Indices: 8334495--8334532 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
8334485 TAAAAGCATA
8334495 GGATG GGATG GGATG GGATG GGATG GGATG GGATG GGA
1 GGATG GGATG GGATG GGATG GGATG GGATG GGATG GGA
8334533 GAAAATGGAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.21, C:0.00, G:0.61, T:0.18
Consensus pattern (5 bp):
GGATG
Found at i:8336478 original size:2 final size:2
Alignment explanation
Indices: 8336471--8336506 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
8336461 AACACATGCG
8336471 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
8336507 TATATATACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:8337895 original size:27 final size:27
Alignment explanation
Indices: 8337843--8337895 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
8337833 CAAGAAAAAT
* * *
8337843 CGCAATCCTAATTTTCTAGGGGTTAAC
1 CGCAACCCTAATTTTCTAGAGATTAAC
8337870 CGCAACCCTAATTTTCTAGAGATTAA
1 CGCAACCCTAATTTTCTAGAGATTAA
8337896 TCAATAATGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (27 bp):
CGCAACCCTAATTTTCTAGAGATTAAC
Found at i:8344090 original size:98 final size:98
Alignment explanation
Indices: 8343974--8344170 Score: 340
Period size: 98 Copynumber: 2.0 Consensus size: 98
8343964 AAAAAAATCA
* *
8343974 TAAAGGAAATTTTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
8344039 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
* * *
8344072 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGGATCGTGCCCTAACGTATTGGGTGTGGTTTC
1 TAAAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
8344137 TTAAATCTTGGATGAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
8344170 T
1 T
8344171 TTTATTGTTT
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:8346790 original size:27 final size:27
Alignment explanation
Indices: 8346726--8346781 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
8346716 GTTCGTTTGT
*
8346726 AAATGTAATCTTTATTTGATTGTTTTC
1 AAATGTATTCTTTATTTGATTGTTTTC
*
8346753 AAATGTATTCTTTATTTGGTTGTTTTC
1 AAATGTATTCTTTATTTGATTGTTTTC
8346780 AA
1 AA
8346782 GTTAATTCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.25, C:0.07, G:0.12, T:0.55
Consensus pattern (27 bp):
AAATGTATTCTTTATTTGATTGTTTTC
Found at i:8347123 original size:29 final size:29
Alignment explanation
Indices: 8347081--8347141 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
8347071 TCAATAAAAC
8347081 AATTATGCTAAAAATAATACTTTATTTTG
1 AATTATGCTAAAAATAATACTTTATTTTG
8347110 AATTATGCTAAAAATAATACTTTATTTTG
1 AATTATGCTAAAAATAATACTTTATTTTG
8347139 AAT
1 AAT
8347142 AAAGTACCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.44
Consensus pattern (29 bp):
AATTATGCTAAAAATAATACTTTATTTTG
Found at i:8348930 original size:18 final size:18
Alignment explanation
Indices: 8348907--8348944 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
8348897 AGGTTGTGAC
8348907 ATGTATAT-AGTTGTCTTG
1 ATGTATATAAG-TGTCTTG
8348925 ATGTATATAAGTGTCTTG
1 ATGTATATAAGTGTCTTG
8348943 AT
1 AT
8348945 ACATATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.26, C:0.05, G:0.21, T:0.47
Consensus pattern (18 bp):
ATGTATATAAGTGTCTTG
Found at i:8358858 original size:22 final size:22
Alignment explanation
Indices: 8358828--8358870 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8358818 ACAACAAAAC
*
8358828 AGGCTTTTAGCGGCACTTTTTT
1 AGGCCTTTAGCGGCACTTTTTT
*
8358850 AGGCCTTTAGCGGCGCTTTTT
1 AGGCCTTTAGCGGCACTTTTT
8358871 AGCACCGGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.12, C:0.21, G:0.26, T:0.42
Consensus pattern (22 bp):
AGGCCTTTAGCGGCACTTTTTT
Found at i:8359030 original size:43 final size:42
Alignment explanation
Indices: 8358964--8359407 Score: 523
Period size: 43 Copynumber: 10.3 Consensus size: 42
8358954 TTCCAGTAAA
* *
8358964 AAACGCCGCTAAAGGCCGAGACCTTTAGCGGCGCTTCCAACAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCC-ACAC
* * *
8359007 AAATGCCGCCAAAGACCAAGACCTTTAGCGGCGCTTTCCACAT
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGC-TTCCACAC
** *
8359050 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCCTTTTATAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCG-CTTCCACAC
* *
8359093 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCATAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGC-TTCCACAC
*
8359136 AAACGCCGCTAAAGACCAAGACCTGTAGCGGCGCTTCCAACAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCC-ACAC
* * ** *
8359179 AAACGCCGCCAAAAGACCAAAACCTTTAGCGGCGCTTTTAATAC
1 AAACGCCG-CTAAAGACCAAGACCTTTAGCGGCGC-TTCCACAC
*
8359223 AAACGCCGCTAAAGACTAAGACCTTTAGCGGCGCTTTCCACAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGC-TTCCACAC
* *
8359266 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTCCCACAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTT-CCACAC
*
8359309 AAACGCCGCTAAAGA-CAACGACCATTTAGCGGCGCTTACACTAC
1 AAACGCCGCTAAAGACCAA-GACC-TTTAGCGGCGCTTCCAC-AC
** * * *
8359353 AAACGCTTCTAAAGATCGAGACCTTTAGCGGCGCTTTTCC-CAA
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGC--TTCCACAC
8359396 AAACGCCGCTAA
1 AAACGCCGCTAA
8359408 TTTTGGCGGA
Statistics
Matches: 349, Mismatches: 39, Indels: 26
0.84 0.09 0.06
Matches are distributed among these distances:
42 9 0.03
43 261 0.75
44 72 0.21
45 7 0.02
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (42 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCCACAC
Done.