Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62681010
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1052928 characters in sequence are not A, C, G, or T
File 31 of 210
Found at i:9988623 original size:20 final size:20
Alignment explanation
Indices: 9988587--9988624 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9988577 AAAAGGCCAT
*
9988587 TTGACCGTAAACTTTAACAA
1 TTGACCGTAAACGTTAACAA
9988607 TTGACCGTTAAA-GTTAAC
1 TTGACCG-TAAACGTTAAC
9988625 TGCCCATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (20 bp):
TTGACCGTAAACGTTAACAA
Found at i:9988762 original size:11 final size:11
Alignment explanation
Indices: 9988745--9988769 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
9988735 TAAAAATCGT
9988745 AAAAAAATTTA
1 AAAAAAATTTA
9988756 AAAAAAATTTA
1 AAAAAAATTTA
9988767 AAA
1 AAA
9988770 TTTTATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAAAAATTTA
Found at i:9988769 original size:18 final size:19
Alignment explanation
Indices: 9988748--9988788 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
9988738 AAATCGTAAA
9988748 AAAATTTAAAAAAAATT-T
1 AAAATTTAAAAAAAATTAT
* *
9988766 AAAATTTTATAAAAATTAT
1 AAAATTTAAAAAAAATTAT
9988785 AAAA
1 AAAA
9988789 AAATATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAATTTAAAAAAAATTAT
Found at i:9988769 original size:29 final size:29
Alignment explanation
Indices: 9988716--9988799 Score: 80
Period size: 29 Copynumber: 2.8 Consensus size: 29
9988706 AAACTTTAAT
* *
9988716 AAAAATTAGAAAATATATATAAAAATCGTAA
1 AAAAATTATAAAA-AAATAT-AAAATCGTAA
* ** *
9988747 AAAAATT-TAAAAAAAATTTAAAATTTTAT
1 AAAAATTAT-AAAAAAATATAAAATCGTAA
9988776 AAAAATTATAAAAAAATATAAAAT
1 AAAAATTATAAAAAAATATAAAAT
9988800 GCATCAAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
29 28 0.64
30 5 0.11
31 11 0.25
ACGTcount: A:0.67, C:0.01, G:0.02, T:0.30
Consensus pattern (29 bp):
AAAAATTATAAAAAAATATAAAATCGTAA
Found at i:9988976 original size:9 final size:9
Alignment explanation
Indices: 9988962--9989104 Score: 58
Period size: 9 Copynumber: 15.0 Consensus size: 9
9988952 TTTTGGTATA
9988962 ATAATTTTT
1 ATAATTTTT
9988971 ATAATTTTTTT
1 ATAA--TTTTT
* *
9988982 ACAAATTTT
1 ATAATTTTT
9988991 ATAATTTTT
1 ATAATTTTT
*
9989000 TTACATTTTTT
1 ATA-A-TTTTT
*
9989011 ATCATTTTT
1 ATAATTTTT
*
9989020 -TACGACTTTAT
1 ATA--A-TTTTT
9989031 ATAA-TTTT
1 ATAATTTTT
*
9989039 ATTTATTTTT
1 A-TAATTTTT
*
9989049 CT-ATATTTT
1 ATAAT-TTTT
9989058 ATAATTTTT
1 ATAATTTTT
**
9989067 ACGATTTTT
1 ATAATTTTT
*
9989076 ATAAAATTTT
1 AT-AATTTTT
* *
9989086 ATGATTTAT
1 ATAATTTTT
9989095 ATAATATTTT
1 ATAAT-TTTT
9989105 TCTAACTTTT
Statistics
Matches: 97, Mismatches: 23, Indels: 27
0.66 0.16 0.18
Matches are distributed among these distances:
8 7 0.07
9 50 0.52
10 20 0.21
11 18 0.19
12 2 0.02
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (9 bp):
ATAATTTTT
Found at i:9988992 original size:20 final size:20
Alignment explanation
Indices: 9988967--9989043 Score: 84
Period size: 20 Copynumber: 3.8 Consensus size: 20
9988957 GTATAATAAT
9988967 TTTTATAATTTTTTTACAAA
1 TTTTATAATTTTTTTACAAA
**
9988987 TTTTATAATTTTTTTACATT
1 TTTTATAATTTTTTTACAAA
* * *
9989007 TTTTATCA-TTTTTTACGAC
1 TTTTATAATTTTTTTACAAA
9989026 TTTATATAATTTTATTTA
1 TTT-TATAATTTT-TTTA
9989044 TTTTTCTATA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
19 11 0.23
20 29 0.62
21 3 0.06
22 4 0.09
ACGTcount: A:0.29, C:0.06, G:0.01, T:0.64
Consensus pattern (20 bp):
TTTTATAATTTTTTTACAAA
Found at i:9989000 original size:10 final size:10
Alignment explanation
Indices: 9988962--9989066 Score: 55
Period size: 10 Copynumber: 10.9 Consensus size: 10
9988952 TTTTGGTATA
9988962 ATAA-TTTTT
1 ATAATTTTTT
9988971 ATAATTTTTT
1 ATAATTTTTT
**
9988981 -TACAAATTTT
1 ATA-ATTTTTT
9988991 ATAATTTTTT
1 ATAATTTTTT
9989001 -TACATTTTTT
1 ATA-ATTTTTT
*
9989011 ATCATTTTTT
1 ATAATTTTTT
** * *
9989021 ACGACTTTAT
1 ATAATTTTTT
9989031 ATAATTTTATT
1 ATAATTTT-TT
9989042 -T-ATTTTTCT
1 ATAATTTTT-T
9989051 AT-A--TTTT
1 ATAATTTTTT
9989058 ATAATTTTT
1 ATAATTTTT
9989067 ACGATTTTTA
Statistics
Matches: 72, Mismatches: 13, Indels: 21
0.68 0.12 0.20
Matches are distributed among these distances:
7 3 0.04
8 5 0.07
9 14 0.19
10 46 0.64
11 4 0.06
ACGTcount: A:0.29, C:0.06, G:0.01, T:0.65
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:9989011 original size:40 final size:41
Alignment explanation
Indices: 9988966--9989043 Score: 106
Period size: 40 Copynumber: 1.9 Consensus size: 41
9988956 GGTATAATAA
9988966 TTTTTATAATTTTTTTACAAATTT-TATAATTTT-TTTACAT
1 TTTTTATAA-TTTTTTACAAATTTATATAATTTTATTTACAT
* * *
9989006 TTTTTATCATTTTTTACGACTTTATATAATTTTATTTA
1 TTTTTATAATTTTTTACAAATTTATATAATTTTATTTA
9989044 TTTTTCTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
39 12 0.36
40 17 0.52
41 4 0.12
ACGTcount: A:0.28, C:0.06, G:0.01, T:0.64
Consensus pattern (41 bp):
TTTTTATAATTTTTTACAAATTTATATAATTTTATTTACAT
Found at i:9989085 original size:19 final size:19
Alignment explanation
Indices: 9989054--9989104 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
9989044 TTTTTCTATA
*
9989054 TTTTAT-AATTTTTACGAT
1 TTTTATAAAATTTTACGAT
*
9989072 TTTTATAAAATTTTATGAT
1 TTTTATAAAATTTTACGAT
* *
9989091 TTATATAATATTTT
1 TTTTATAAAATTTT
9989105 TCTAACTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
18 6 0.21
19 22 0.79
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (19 bp):
TTTTATAAAATTTTACGAT
Found at i:9989131 original size:30 final size:29
Alignment explanation
Indices: 9989097--9989175 Score: 77
Period size: 30 Copynumber: 2.6 Consensus size: 29
9989087 TGATTTATAT
9989097 AATATTTTTCTAACTTTTTAATAAAAATTA
1 AATATTTTT-TAACTTTTTAATAAAAATTA
* * * * *
9989127 AATATTTCTTATATTTTTTTATTAAAATTT
1 AATATTTTTTA-ACTTTTTAATAAAAATTA
9989157 AATAATTTTTATAACTTTT
1 AAT-ATTTTT-TAACTTTT
9989176 ATTGATTTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
29 2 0.05
30 25 0.64
31 10 0.26
32 2 0.05
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (29 bp):
AATATTTTTTAACTTTTTAATAAAAATTA
Found at i:9992577 original size:22 final size:24
Alignment explanation
Indices: 9992542--9992586 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 24
9992532 ATTTGATATA
*
9992542 TTTTGATATAAAAAATTGAAATTT
1 TTTTGATATAAAAAATTAAAATTT
*
9992566 TTTTGA-AT-AAAAGTTAAAATT
1 TTTTGATATAAAAAATTAAAATT
9992587 GAACAATGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 2 0.11
24 6 0.32
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (24 bp):
TTTTGATATAAAAAATTAAAATTT
Found at i:9996953 original size:41 final size:41
Alignment explanation
Indices: 9996908--9996988 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
9996898 CTATAACGGC
*
9996908 GTTTATGAGAAAAACGCTGCAAAAAGTCAAGCAGTAGCGGT
1 GTTTATGAGAAAAACGCCGCAAAAAGTCAAGCAGTAGCGGT
* * * *
9996949 GTTTATGATAAAAATGCCGTAAAAGGTCAAGCAGTAGCGG
1 GTTTATGAGAAAAACGCCGCAAAAAGTCAAGCAGTAGCGG
9996989 CTTTTTTATC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.38, C:0.14, G:0.27, T:0.21
Consensus pattern (41 bp):
GTTTATGAGAAAAACGCCGCAAAAAGTCAAGCAGTAGCGGT
Found at i:9997014 original size:41 final size:41
Alignment explanation
Indices: 9996876--9997014 Score: 104
Period size: 41 Copynumber: 3.4 Consensus size: 41
9996866 CGCTAATAGG
* * * * *
9996876 AAAATGCCACAAAAGGTTAGAGCTA-TAACGGCGTTTATGAGA
1 AAAATGCCACAAAAGGTCA-AGC-AGTAGCGGTGTTTATCATA
* ** * *
9996918 AAAACGCTGCAAAAAGTCAAGCAGTAGCGGTGTTTATGATA
1 AAAATGCCACAAAAGGTCAAGCAGTAGCGGTGTTTATCATA
** *
9996959 AAAATGCCGTAAAAGGTCAAGCAGTAGCGGCTTTTTTATCAT-
1 AAAATGCCACAAAAGGTCAAGCAGTAGCGG--TGTTTATCATA
9997001 AAAA-GCCACAAAAG
1 AAAATGCCACAAAAG
9997015 CAAAAAAAAA
Statistics
Matches: 78, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
40 1 0.01
41 51 0.65
42 18 0.23
43 8 0.10
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (41 bp):
AAAATGCCACAAAAGGTCAAGCAGTAGCGGTGTTTATCATA
Found at i:9997093 original size:28 final size:27
Alignment explanation
Indices: 9997032--9997094 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 27
9997022 AAATATTTTA
* * *
9997032 TTTTAGGATTTAGGGTTTAGAGTTTTAG
1 TTTTA-GATTTAGGGTTTAAAATTTAAG
9997060 TGTTTAGATTTAGGGTTTAAAATTTAATG
1 T-TTTAGATTTAGGGTTTAAAATTTAA-G
9997089 TTTTAG
1 TTTTAG
9997095 TGTTTATGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
28 24 0.80
29 6 0.20
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (27 bp):
TTTTAGATTTAGGGTTTAAAATTTAAG
Found at i:10004477 original size:23 final size:23
Alignment explanation
Indices: 10004425--10004478 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
10004415 TTAAGTTAAT
* **
10004425 CGAATCAAGTTATTCGAGTCGACT
1 CGAAT-AAGTTATTCGAGTCAAAG
*
10004449 CAAATAAGTTATTCGAGTCAAAG
1 CGAATAAGTTATTCGAGTCAAAG
10004472 CGAATAA
1 CGAATAA
10004479 ATGGACAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 21 0.84
24 4 0.16
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.26
Consensus pattern (23 bp):
CGAATAAGTTATTCGAGTCAAAG
Found at i:10006674 original size:14 final size:15
Alignment explanation
Indices: 10006657--10006696 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
10006647 CTAAAAATTT
10006657 ATTTTAAAAATAA-A
1 ATTTTAAAAATAAGA
*
10006671 ATTTTAAAAA-AAGT
1 ATTTTAAAAATAAGA
10006685 ATTTTAAAAATA
1 ATTTTAAAAATA
10006697 TTTTAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 2 0.09
14 20 0.87
15 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (15 bp):
ATTTTAAAAATAAGA
Found at i:10010019 original size:3 final size:3
Alignment explanation
Indices: 10010011--10010083 Score: 112
Period size: 3 Copynumber: 24.3 Consensus size: 3
10010001 ATGAATTAAA
* *
10010011 TAT TAT TA- TAT TAT TAT AAT AAT GTAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
10010056 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
10010084 GAAATAAAGT
Statistics
Matches: 66, Mismatches: 2, Indels: 4
0.92 0.03 0.06
Matches are distributed among these distances:
2 2 0.03
3 62 0.94
4 2 0.03
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:10010916 original size:36 final size:37
Alignment explanation
Indices: 10010844--10010939 Score: 108
Period size: 37 Copynumber: 2.6 Consensus size: 37
10010834 TAATATATGT
*
10010844 GTGAAATTGAAATGAAAAT-TGACTTGAAAATGG-AAAA
1 GTGAAATTGAATTG-AAATGTGA-TTGAAAATGGAAAAA
* * *
10010881 GTGAATTTTGAATTGAATTGTGATTGAAAGT-GAAAAA
1 GTGAA-ATTGAATTGAAATGTGATTGAAAATGGAAAAA
10010918 GTGAAATTGAATTGAAATGTGA
1 GTGAAATTGAATTGAAATGTGA
10010940 ATTTGGAGAC
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
36 16 0.32
37 24 0.48
38 10 0.20
ACGTcount: A:0.45, C:0.01, G:0.24, T:0.30
Consensus pattern (37 bp):
GTGAAATTGAATTGAAATGTGATTGAAAATGGAAAAA
Found at i:10028798 original size:26 final size:26
Alignment explanation
Indices: 10028751--10028803 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
10028741 TAAATTTCAC
*
10028751 TTTTTTAACTATTTATATTATTGAAT
1 TTTTTTAACTATTTATAATATTGAAT
*
10028777 TTTTTTAATTATATTA-AATATTGAAT
1 TTTTTTAACTAT-TTATAATATTGAAT
10028803 T
1 T
10028804 ATTGATGTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (26 bp):
TTTTTTAACTATTTATAATATTGAAT
Found at i:10034611 original size:14 final size:15
Alignment explanation
Indices: 10034582--10034619 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
10034572 ATATCTCAAT
*
10034582 TTAATTTCATACCAA
1 TTAATTACATACCAA
*
10034597 TT-ATTACATATCAA
1 TTAATTACATACCAA
10034611 TTAATTACA
1 TTAATTACA
10034620 CCATTTTCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (15 bp):
TTAATTACATACCAA
Found at i:10036020 original size:25 final size:23
Alignment explanation
Indices: 10035976--10036021 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
10035966 TATTAAAATG
*
10035976 AAAAAAAAAATTAAATTGTAAGT
1 AAAAAAAAAATTAAAATGTAAGT
*
10035999 AAAATAAAAATTTAAACATGTAA
1 AAAA-AAAAAATTAAA-ATGTAA
10036022 ATACATCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 10 0.53
25 5 0.26
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (23 bp):
AAAAAAAAAATTAAAATGTAAGT
Found at i:10036241 original size:20 final size:19
Alignment explanation
Indices: 10036192--10036241 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
10036182 AATGTAAATA
*
10036192 TTTTATTGAATAAAGTTTTG
1 TTTTATTG-ATAAAGTTATG
* *
10036212 GTTTAGTGATAAAGTTAATG
1 TTTTATTGATAAAGTT-ATG
10036232 TTTTATTGAT
1 TTTTATTGAT
10036242 GTAAATAGTA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.30, C:0.00, G:0.18, T:0.52
Consensus pattern (19 bp):
TTTTATTGATAAAGTTATG
Found at i:10040196 original size:58 final size:58
Alignment explanation
Indices: 10040122--10040313 Score: 185
Period size: 58 Copynumber: 3.3 Consensus size: 58
10040112 TTAATATAAT
* * *
10040122 ATTTGGTACATGAACTTCACACTTTTTC-TAATTTGGCATCTAAACTTTTTTTG-GTCAA
1 ATTTGGTAC-TAAACTTGACACTTTTTCTTAATTTGGTA-CTAAACTTTTTTTGAGTCAA
* * * *
10040180 ATTTGGTACTCAAACTTGACACTTTTTCTTAAGTTGGTACTTAA-TCTTTTTGGAGTCCA
1 ATTTGGTACT-AAACTTGACACTTTTTCTTAATTTGGTACTAAACT-TTTTTTGAGTCAA
* * * * * *
10040239 ATTTGGTACTGAACTTGACTCTTTTTCTTAATTTGGTACCTAATCTTTTTTTTATTC-G
1 ATTTGGTACTAAACTTGACACTTTTTCTTAATTTGGTA-CTAAACTTTTTTTGAGTCAA
10040297 ATTTGGTACTTAAACTT
1 ATTTGGTAC-TAAACTT
10040314 ATCAAACGTT
Statistics
Matches: 110, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
57 2 0.02
58 68 0.62
59 39 0.35
60 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.13, T:0.47
Consensus pattern (58 bp):
ATTTGGTACTAAACTTGACACTTTTTCTTAATTTGGTACTAAACTTTTTTTGAGTCAA
Found at i:10040500 original size:31 final size:31
Alignment explanation
Indices: 10040462--10040531 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 31
10040452 TTAATATAAC
*
10040462 ATTTGGTACTTGAACTTGACACTTTTT-CTTA
1 ATTTGGTACTTGAACTTGACA-TTTTTCCCTA
*
10040493 ATTTGGTACTTGAACTTGGCATTTTTCCCTA
1 ATTTGGTACTTGAACTTGACATTTTTCCCTA
10040524 ATTTGGTA
1 ATTTGGTA
10040532 GCTAAACTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 5 0.14
31 31 0.86
ACGTcount: A:0.21, C:0.16, G:0.16, T:0.47
Consensus pattern (31 bp):
ATTTGGTACTTGAACTTGACATTTTTCCCTA
Found at i:10040540 original size:31 final size:31
Alignment explanation
Indices: 10040462--10040540 Score: 90
Period size: 31 Copynumber: 2.5 Consensus size: 31
10040452 TTAATATAAC
* *
10040462 ATTTGGTACTTGAACTTGACACTTTTTCTTA
1 ATTTGGTACTTAAACTTGACACTTTTTCCTA
* *
10040493 ATTTGGTACTTGAACTTGGCA-TTTTTCCCTA
1 ATTTGGTACTTAAACTTGACACTTTTT-CCTA
10040524 ATTTGGTAGC-TAAACTT
1 ATTTGGTA-CTTAAACTT
10040541 TTTCTTAAGT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
30 5 0.12
31 37 0.86
32 1 0.02
ACGTcount: A:0.23, C:0.16, G:0.15, T:0.46
Consensus pattern (31 bp):
ATTTGGTACTTAAACTTGACACTTTTTCCTA
Found at i:10040901 original size:60 final size:60
Alignment explanation
Indices: 10040832--10040944 Score: 142
Period size: 60 Copynumber: 1.9 Consensus size: 60
10040822 AAATCGAATA
10040832 AAAAAAGATT-AGATACCAAATT-AGAAAAAAGAGTCAAGTTCAGA-TACCAAATTAGACCCC
1 AAAAAAGATTAAG-TACCAAATTAAG-AAAAAGAGTCAAGTT-AGAGTACCAAATTAGACCCC
* * * *
10040892 AAAAAAGATTAAGTGCCAACTTAAGAAAAAGTGTCAAGTTTGAGTACCAAATT
1 AAAAAAGATTAAGTACCAAATTAAGAAAAAGAGTCAAGTTAGAGTACCAAATT
10040945 GGACAAAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
59 2 0.04
60 40 0.87
61 4 0.09
ACGTcount: A:0.50, C:0.14, G:0.15, T:0.21
Consensus pattern (60 bp):
AAAAAAGATTAAGTACCAAATTAAGAAAAAGAGTCAAGTTAGAGTACCAAATTAGACCCC
Found at i:10040956 original size:60 final size:60
Alignment explanation
Indices: 10040831--10040958 Score: 136
Period size: 60 Copynumber: 2.1 Consensus size: 60
10040821 CAAATCGAAT
**
10040831 AAAAAAAGATTAGATACCAAATTAGAAAAAAGAGTCAAGTTCAGATACCAAATTAGACCC
1 AAAAAAAGATTAGATACCAAATTAGAAAAAAGAGTCAAGTTCAGATACCAAATTAGACAA
* * * * * *
10040891 CAAAAAAGATTA-AGTGCCAACTTA-AGAAAAAGTGTCAAGTT-TGAGTACCAAATTGGACAA
1 AAAAAAAGATTAGA-TACCAAATTAGA-AAAAAGAGTCAAGTTCAGA-TACCAAATTAGACAA
10040951 AAAAAAAG
1 AAAAAAAG
10040959 TGTCATTCCG
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
59 4 0.07
60 52 0.93
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.19
Consensus pattern (60 bp):
AAAAAAAGATTAGATACCAAATTAGAAAAAAGAGTCAAGTTCAGATACCAAATTAGACAA
Found at i:10041217 original size:60 final size:60
Alignment explanation
Indices: 10041148--10041260 Score: 142
Period size: 60 Copynumber: 1.9 Consensus size: 60
10041138 AAATCGAATA
10041148 AAAAAAGATT-AGATACCAAATT-AGAAAAAAGAGTCAAGTTCAGA-TACCAAATTAGACCCC
1 AAAAAAGATTAAG-TACCAAATTAAG-AAAAAGAGTCAAGTT-AGAGTACCAAATTAGACCCC
* * * *
10041208 AAAAAAGATTAAGTGCCAACTTAAGAAAAAGTGTCAAGTTTGAGTACCAAATT
1 AAAAAAGATTAAGTACCAAATTAAGAAAAAGAGTCAAGTTAGAGTACCAAATT
10041261 GGACAAAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
59 2 0.04
60 40 0.87
61 4 0.09
ACGTcount: A:0.50, C:0.14, G:0.15, T:0.21
Consensus pattern (60 bp):
AAAAAAGATTAAGTACCAAATTAAGAAAAAGAGTCAAGTTAGAGTACCAAATTAGACCCC
Found at i:10041237 original size:316 final size:315
Alignment explanation
Indices: 10040664--10041294 Score: 1253
Period size: 316 Copynumber: 2.0 Consensus size: 315
10040654 TAATTAATTA
10040664 AACAAATAAAGCTAAAAGTAATTGAACATATAAAATACAAAAAAATCATATTATTTATCACATGT
1 AACAAATAAAGCTAAAAGTAATTGAACATATAAAATACAAAAAAATCATATTATTTATCACATGT
10040729 CGGTCATACATTGATTATTTTTATTGCCTCATAAAAAACAACATTGTTAGTATATTGGAGTAATT
66 CGGTCATACATTGATTATTTTTATTGCCTCATAAAAAACAACATTGTTAGTATATTGGAGTAATT
10040794 TGTAAAAAGTTTGACAAGTTCAAGTACCAAATCGAATAAAAAAAGATTAGATACCAAATTAGAAA
131 TGTAAAAAGTTTGACAAGTTCAAGTACCAAATCGAATAAAAAAAGATTAGATACCAAATTAGAAA
10040859 AAAGAGTCAAGTTCAGATACCAAATTAGACCCCAAAAAAGATTAAGTGCCAACTTAAGAAAAAGT
196 AAAGAGTCAAGTTCAGATACCAAATTAGACCCCAAAAAAGATTAAGTGCCAACTTAAGAAAAAGT
10040924 GTCAAGTTTGAGTACCAAATTGGACAAAAAAAAAGTGTCATTCCGGCAATCTATTG
261 GTCAAGTTTGAGTACCAAATTGGAC-AAAAAAAAGTGTCATTCCGGCAATCTATTG
10040980 AACAAATAAAGCTAAAAGTAATTGAACATATAAAATACAAAAAAATCATATTATTTATCACATGT
1 AACAAATAAAGCTAAAAGTAATTGAACATATAAAATACAAAAAAATCATATTATTTATCACATGT
10041045 CGGTCATACATTGATTATTTTTATTGCCTCATAAAAAACAACATTGTTAGTATATTGGAGTAATT
66 CGGTCATACATTGATTATTTTTATTGCCTCATAAAAAACAACATTGTTAGTATATTGGAGTAATT
10041110 TGTAAAAAGTTTGACAAGTTCAAGTACCAAATCGAATAAAAAAAGATTAGATACCAAATTAGAAA
131 TGTAAAAAGTTTGACAAGTTCAAGTACCAAATCGAATAAAAAAAGATTAGATACCAAATTAGAAA
10041175 AAAGAGTCAAGTTCAGATACCAAATTAGACCCCAAAAAAGATTAAGTGCCAACTTAAGAAAAAGT
196 AAAGAGTCAAGTTCAGATACCAAATTAGACCCCAAAAAAGATTAAGTGCCAACTTAAGAAAAAGT
10041240 GTCAAGTTTGAGTACCAAATTGGACAAAAAAAAGTGTCATTCCGGCAATCTATTG
261 GTCAAGTTTGAGTACCAAATTGGACAAAAAAAAGTGTCATTCCGGCAATCTATTG
10041295 TTTTTTGCAA
Statistics
Matches: 315, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
315 30 0.10
316 285 0.90
ACGTcount: A:0.46, C:0.13, G:0.14, T:0.27
Consensus pattern (315 bp):
AACAAATAAAGCTAAAAGTAATTGAACATATAAAATACAAAAAAATCATATTATTTATCACATGT
CGGTCATACATTGATTATTTTTATTGCCTCATAAAAAACAACATTGTTAGTATATTGGAGTAATT
TGTAAAAAGTTTGACAAGTTCAAGTACCAAATCGAATAAAAAAAGATTAGATACCAAATTAGAAA
AAAGAGTCAAGTTCAGATACCAAATTAGACCCCAAAAAAGATTAAGTGCCAACTTAAGAAAAAGT
GTCAAGTTTGAGTACCAAATTGGACAAAAAAAAGTGTCATTCCGGCAATCTATTG
Found at i:10041272 original size:60 final size:60
Alignment explanation
Indices: 10041147--10041272 Score: 132
Period size: 60 Copynumber: 2.1 Consensus size: 60
10041137 CAAATCGAAT
**
10041147 AAAAAAAGATTAGATACCAAATTAGAAAAAAGAGTCAAGTTCAGATACCAAATTAGACCC
1 AAAAAAAGATTAGATACCAAATTAGAAAAAAGAGTCAAGTTCAGATACCAAATTAGACAA
* * * * * *
10041207 CAAAAAAGATTA-AGTGCCAACTTA-AGAAAAAGTGTCAAGTT-TGAGTACCAAATTGGACAA
1 AAAAAAAGATTAGA-TACCAAATTAGA-AAAAAGAGTCAAGTTCAGA-TACCAAATTAGACAA
10041267 AAAAAA
1 AAAAAA
10041273 GTGTCATTCC
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
59 4 0.07
60 50 0.93
ACGTcount: A:0.52, C:0.13, G:0.15, T:0.19
Consensus pattern (60 bp):
AAAAAAAGATTAGATACCAAATTAGAAAAAAGAGTCAAGTTCAGATACCAAATTAGACAA
Found at i:10047863 original size:55 final size:55
Alignment explanation
Indices: 10047787--10047899 Score: 226
Period size: 55 Copynumber: 2.1 Consensus size: 55
10047777 CTTATAATAA
10047787 TACTAATATTAACTAAACTAAAACTCAATCGGTCGATAAACTTTTTTTTATATTC
1 TACTAATATTAACTAAACTAAAACTCAATCGGTCGATAAACTTTTTTTTATATTC
10047842 TACTAATATTAACTAAACTAAAACTCAATCGGTCGATAAACTTTTTTTTATATTC
1 TACTAATATTAACTAAACTAAAACTCAATCGGTCGATAAACTTTTTTTTATATTC
10047897 TAC
1 TAC
10047900 CCTTTAAATT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 58 1.00
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.40
Consensus pattern (55 bp):
TACTAATATTAACTAAACTAAAACTCAATCGGTCGATAAACTTTTTTTTATATTC
Found at i:10048537 original size:52 final size:52
Alignment explanation
Indices: 10048480--10048590 Score: 179
Period size: 52 Copynumber: 2.1 Consensus size: 52
10048470 ATTGTATGTT
10048480 TTTTTTTTAATGG-AGCCTATCTGAAAGGCACCAATGAATATTTTATATTAAA
1 TTTTTTTTAATGGCA-CCTATCTGAAAGGCACCAATGAATATTTTATATTAAA
* * *
10048532 TTTTTTTTAATGGCACCTATCTGACAGGCGCCAATGAATTTTTTATATTAAA
1 TTTTTTTTAATGGCACCTATCTGAAAGGCACCAATGAATATTTTATATTAAA
10048584 TTTTTTT
1 TTTTTTT
10048591 CTTTTAATAA
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
52 54 0.98
53 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.45
Consensus pattern (52 bp):
TTTTTTTTAATGGCACCTATCTGAAAGGCACCAATGAATATTTTATATTAAA
Found at i:10056438 original size:19 final size:18
Alignment explanation
Indices: 10056411--10056467 Score: 71
Period size: 19 Copynumber: 3.2 Consensus size: 18
10056401 AAAAAAACAT
10056411 TTTAATTTTCCTATTATTA
1 TTTAATTTTCCTATT-TTA
* *
10056430 TTTATTTTTACTATTTTA
1 TTTAATTTTCCTATTTTA
*
10056448 TTTAATTTTCAT-TTTTA
1 TTTAATTTTCCTATTTTA
10056465 TTT
1 TTT
10056468 TTACAGGAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
17 8 0.24
18 12 0.36
19 13 0.39
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTAATTTTCCTATTTTA
Found at i:10061486 original size:17 final size:16
Alignment explanation
Indices: 10061461--10061515 Score: 55
Period size: 15 Copynumber: 3.6 Consensus size: 16
10061451 ATCTTTTTTC
10061461 TTTCT-TTCTTCTTCT
1 TTTCTCTTCTTCTTCT
*
10061476 TCTTCTCTTCTTC-TCC
1 T-TTCTCTTCTTCTTCT
10061492 TTTCTC-TCTT-TTCT
1 TTTCTCTTCTTCTTCT
10061506 TTCTCTCTTC
1 TT-TCTCTTC
10061516 CGTTCATGCA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
14 8 0.24
15 10 0.30
16 9 0.27
17 6 0.18
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTCTCTTCTTCTTCT
Found at i:10061505 original size:27 final size:27
Alignment explanation
Indices: 10061464--10061515 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
10061454 TTTTTTCTTT
10061464 CTTTCTTCTTCTTC-TTCTCTTCTTCTC
1 CTTTCTTCTTCTTCTTTCTC-TCTTCTC
10061491 CTTTCTCTCTT-TTCTTTCTCTCTTC
1 CTTTCT-TCTTCTTCTTTCTCTCTTC
10061516 CGTTCATGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
27 14 0.61
28 9 0.39
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (27 bp):
CTTTCTTCTTCTTCTTTCTCTCTTCTC
Found at i:10061509 original size:13 final size:14
Alignment explanation
Indices: 10061462--10061515 Score: 69
Period size: 13 Copynumber: 4.0 Consensus size: 14
10061452 TCTTTTTTCT
10061462 TTCTTTCT-TCTTC
1 TTCTTTCTCTCTTC
10061475 TTC-TTCTCTTCTTC
1 TTCTTTCTC-TCTTC
*
10061489 TCCTTTCTCTCTT-
1 TTCTTTCTCTCTTC
10061502 TTCTTTCTCTCTTC
1 TTCTTTCTCTCTTC
10061516 CGTTCATGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
12 4 0.11
13 15 0.43
14 11 0.31
15 5 0.14
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (14 bp):
TTCTTTCTCTCTTC
Found at i:10063965 original size:17 final size:18
Alignment explanation
Indices: 10063943--10063980 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
10063933 AAGAAAAATG
10063943 TAAAAA-TAT-AATATTTA
1 TAAAAATTATAAAT-TTTA
10063960 TAAAAATTATAAATTTTA
1 TAAAAATTATAAATTTTA
10063978 TAA
1 TAA
10063981 TTATTTCCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 10 0.53
19 3 0.16
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TAAAAATTATAAATTTTA
Found at i:10064092 original size:19 final size:20
Alignment explanation
Indices: 10064066--10064103 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
10064056 TTGGAAACAA
10064066 ATTAATAAT-TTT-TAGAAT
1 ATTAATAATATTTGTAGAAT
10064084 ATTATATAATATTTGTAGAA
1 ATTA-ATAATATTTGTAGAA
10064104 GCTCAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 3 0.18
21 5 0.29
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (20 bp):
ATTAATAATATTTGTAGAAT
Found at i:10065552 original size:14 final size:15
Alignment explanation
Indices: 10065524--10065563 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
10065514 GCATGTACCC
10065524 ATTTATATATATATA
1 ATTTATATATATATA
* *
10065539 TTTTATAT-TCTATA
1 ATTTATATATATATA
10065553 ATTTATATATA
1 ATTTATATATA
10065564 CATTTAGATC
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (15 bp):
ATTTATATATATATA
Found at i:10065779 original size:6 final size:6
Alignment explanation
Indices: 10065768--10065809 Score: 52
Period size: 6 Copynumber: 7.0 Consensus size: 6
10065758 TGTGCGATGC
10065768 ATTTTT ATTTTT ATTTTT ATTATTT A--TTT ATTTTT ACTTTTT
1 ATTTTT ATTTTT ATTTTT ATT-TTT ATTTTT ATTTTT A-TTTTT
10065810 TAATCTGGGC
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
4 4 0.12
6 19 0.59
7 9 0.28
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (6 bp):
ATTTTT
Found at i:10066244 original size:108 final size:108
Alignment explanation
Indices: 10066055--10066345 Score: 496
Period size: 108 Copynumber: 2.7 Consensus size: 108
10066045 GTTTCAAAAA
*
10066055 AGGCAATGTTTTGCATTTGAAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGTTTTTCTC
1 AGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGTTTTTCTC
10066120 GTTTAACCAAATGGCTTAATATCCTTTTAAAAATTTTACAATG
66 GTTTAACCAAATGGCTTAATATCCTTTTAAAAATTTTACAATG
*
10066163 AGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATACCCTAAGGTGCTGGGTGTCGTTTTTCTC
1 AGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGTTTTTCTC
*
10066228 GTTTAACCAAATGGCTTAATATCCTTTTAAAATTTTTACAATG
66 GTTTAACCAAATGGCTTAATATCCTTTTAAAAATTTTACAATG
* * * * *
10066271 AGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAAGGTGCTGGGTTTCG-ATTTCTC
1 AGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGTTTTTCTC
10066334 GTTTAACCAAAT
66 GTTTAACCAAAT
10066346 TGCCAAATAT
Statistics
Matches: 174, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
106 18 0.10
107 23 0.13
108 133 0.76
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (108 bp):
AGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGTTTTTCTC
GTTTAACCAAATGGCTTAATATCCTTTTAAAAATTTTACAATG
Found at i:10080847 original size:16 final size:16
Alignment explanation
Indices: 10080824--10080863 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
10080814 CGTTTGGTTC
*
10080824 GCTGTAATGGAATAGA
1 GCTGTAATGGAAGAGA
*
10080840 GGTGTAATGGAAGAGA
1 GCTGTAATGGAAGAGA
10080856 GCTGTAAT
1 GCTGTAAT
10080864 AGTAATTCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.35, C:0.05, G:0.35, T:0.25
Consensus pattern (16 bp):
GCTGTAATGGAAGAGA
Found at i:10080929 original size:44 final size:45
Alignment explanation
Indices: 10080848--10080935 Score: 126
Period size: 44 Copynumber: 2.0 Consensus size: 45
10080838 GAGGTGTAAT
*
10080848 GGAAGAGAGCTGTAATAGTAATTCAATTGTTTGGTTGAATGGAAC
1 GGAAGAGAACTGTAATAGTAATTCAATTGTTTGGTTGAATGGAAC
* *
10080893 GGAATAGAACTGTAATAGT-ATTC-TTGTGTTTGGTTGAATGGAA
1 GGAAGAGAACTGTAATAGTAATTCAAT-TGTTTGGTTGAATGGAA
10080936 TGATGTTATA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
43 1 0.03
44 21 0.54
45 17 0.44
ACGTcount: A:0.32, C:0.06, G:0.28, T:0.34
Consensus pattern (45 bp):
GGAAGAGAACTGTAATAGTAATTCAATTGTTTGGTTGAATGGAAC
Found at i:10081155 original size:56 final size:56
Alignment explanation
Indices: 10081040--10081168 Score: 145
Period size: 56 Copynumber: 2.3 Consensus size: 56
10081030 AATAAGATTA
* *
10081040 TTAATATAAATAATAAATAATTTAATCATATTTTAACATAATTATTATTAAATATAAT
1 TTAATA-AAATAATAAATAATTTAATAAAATTTTAACATAATTATTATT-AATATAAT
* * *
10081098 TTAATAAAA-AATATATAATTTAATAAAATTCTTAATATAATTATTCTT-ATATGAAT
1 TTAATAAAATAATAAATAATTTAATAAAATT-TTAACATAATTATTATTAATAT-AAT
* *
10081154 TTACTAAAATCATAA
1 TTAATAAAATAATAA
10081169 TATATAATAC
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
55 4 0.07
56 29 0.48
57 21 0.35
58 6 0.10
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.43
Consensus pattern (56 bp):
TTAATAAAATAATAAATAATTTAATAAAATTTTAACATAATTATTATTAATATAAT
Found at i:10081412 original size:23 final size:24
Alignment explanation
Indices: 10081401--10081446 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
10081391 TCATAATATC
10081401 CAAACATAATATTCAT-ATATTAA
1 CAAACATAATATTCATAATATTAA
10081424 CAAACATAATATTCAT-ATATTAA
1 CAAACATAATATTCATAATATTAA
10081447 TAAAAAGACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (24 bp):
CAAACATAATATTCATAATATTAA
Found at i:10085146 original size:51 final size:51
Alignment explanation
Indices: 10085068--10085206 Score: 181
Period size: 50 Copynumber: 2.7 Consensus size: 51
10085058 ATAATAACAT
* * **
10085068 GCCAAAGCCATGTCCCAGCCATGGTCTTACATGGGATGTTCTCATATCGGC
1 GCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATATCGGC
* * ** * *
10085119 GCCCATGCCATGTCCCAGACATGGTCTTACGGGGGA-CCTCTCATCTCGGT
1 GCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATATCGGC
10085169 GCCAACGCCATGTCCCAGACATGGTCTTACATGGGATC
1 GCCAACGCCATGTCCCAGACATGGTCTTACATGGGATC
10085207 TCTTTACCTA
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
50 42 0.57
51 32 0.43
ACGTcount: A:0.20, C:0.32, G:0.24, T:0.24
Consensus pattern (51 bp):
GCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATATCGGC
Found at i:10096367 original size:31 final size:32
Alignment explanation
Indices: 10096331--10096395 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
10096321 CTTAGATAAT
10096331 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
10096362 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
10096394 TT
1 TT
10096396 GTAATTTGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 9 0.27
32 24 0.73
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (32 bp):
TTTAAAGAGTTTTTATTAGGATTCAATTACTC
Found at i:10096916 original size:13 final size:15
Alignment explanation
Indices: 10096898--10096933 Score: 58
Period size: 13 Copynumber: 2.5 Consensus size: 15
10096888 TAATTTCTAT
10096898 ATATATATT-ATAAA
1 ATATATATTCATAAA
10096912 A-ATATATTCATAAA
1 ATATATATTCATAAA
10096926 ATATATAT
1 ATATATAT
10096934 AGTATTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 7 0.35
14 7 0.35
15 6 0.30
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (15 bp):
ATATATATTCATAAA
Found at i:10104397 original size:31 final size:31
Alignment explanation
Indices: 10104359--10104432 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 31
10104349 AATTCCCTTT
10104359 TATCATTATATTAAAATATTTAAATATAATC
1 TATCATTATATTAAAATATTTAAATATAATC
* * * *
10104390 TATCATTATAATAAATTATTTAAATATTATT
1 TATCATTATATTAAAATATTTAAATATAATC
*
10104421 TATTATTATATT
1 TATCATTATATT
10104433 TAAGTTTTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (31 bp):
TATCATTATATTAAAATATTTAAATATAATC
Found at i:10104443 original size:31 final size:31
Alignment explanation
Indices: 10104357--10104449 Score: 98
Period size: 31 Copynumber: 3.0 Consensus size: 31
10104347 AAAATTCCCT
* * *
10104357 TTTATCATTATATTAAAATATTTAAATATAA
1 TTTATCATTATATTTAAATTTTTAAATATTA
* *
10104388 TCTATCATTATA-ATAAATTATTTAAATATTA
1 TTTATCATTATATTTAAATT-TTTAAATATTA
* *
10104419 TTTATTATTATATTTAAGTTTTTAAAATATT
1 TTTATCATTATATTTAAATTTTT-AAATATT
10104450 TTATGTATTG
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
30 4 0.08
31 34 0.68
32 12 0.24
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.53
Consensus pattern (31 bp):
TTTATCATTATATTTAAATTTTTAAATATTA
Found at i:10107488 original size:17 final size:17
Alignment explanation
Indices: 10107466--10107498 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
10107456 ATATTTTTCA
10107466 TTTTTAATCAAATATAC
1 TTTTTAATCAAATATAC
10107483 TTTTTAATCAAATATA
1 TTTTTAATCAAATATA
10107499 TATATTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTTAATCAAATATAC
Found at i:10109568 original size:2 final size:2
Alignment explanation
Indices: 10109513--10109550 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
10109503 ATTTTTTCCC
10109513 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
10109551 TGACAATGGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:10109950 original size:15 final size:17
Alignment explanation
Indices: 10109923--10109962 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
10109913 TCCGATTTTT
*
10109923 TTTTGTTTG-TTTAC-G
1 TTTTGTCTGTTTTACTG
10109938 TTTT-TCTGTTTTACTG
1 TTTTGTCTGTTTTACTG
10109954 TTTTGTCTG
1 TTTTGTCTG
10109963 AATTATTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 3 0.14
15 9 0.43
16 5 0.24
17 4 0.19
ACGTcount: A:0.05, C:0.10, G:0.17, T:0.68
Consensus pattern (17 bp):
TTTTGTCTGTTTTACTG
Found at i:10114480 original size:3 final size:3
Alignment explanation
Indices: 10114472--10114499 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
10114462 TTGCAACCTA
10114472 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
10114500 CAGATATATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:10114998 original size:3 final size:3
Alignment explanation
Indices: 10114990--10115056 Score: 84
Period size: 3 Copynumber: 22.7 Consensus size: 3
10114980 CTGCCAAATG
* * *
10114990 TAT TAT TAT TAT T-T T-T TGAC AAT TAC TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT
10115034 TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TA
10115057 AGAAGAGGGT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
2 4 0.07
3 52 0.93
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:10116669 original size:19 final size:17
Alignment explanation
Indices: 10116643--10116696 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
10116633 AAAGCTGTAT
10116643 ACAATTAGAACTCTAAG
1 ACAATTAGAACTCTAAG
* *
10116660 ACATAATTAGAAACTGT-AT
1 AC--AATTAG-AACTCTAAG
10116679 ACAATTAGAACTCTAAG
1 ACAATTAGAACTCTAAG
10116696 A
1 A
10116697 TTAAATAATC
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
16 5 0.17
17 10 0.34
19 9 0.31
20 5 0.17
ACGTcount: A:0.48, C:0.15, G:0.11, T:0.26
Consensus pattern (17 bp):
ACAATTAGAACTCTAAG
Found at i:10116677 original size:36 final size:36
Alignment explanation
Indices: 10116626--10116696 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
10116616 ATCAAAGGCT
10116626 ATAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
1 ATAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
10116662 ATAATTAGAAA-CTGTATACAATTAGAACTCTAAGA
1 ATAATTA-AAAGCTGTATACAATTAGAACTCTAAGA
10116697 TTAAATAATC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
36 31 0.91
37 3 0.09
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.28
Consensus pattern (36 bp):
ATAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
Found at i:10116686 original size:17 final size:17
Alignment explanation
Indices: 10116628--10116688 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
10116618 CAAAGGCTAT
10116628 AATTA-AAAGCTGTATAC
1 AATTAGAAA-CTGTATAC
* *
10116645 AATTAG-AACTCTAAGAC
1 AATTAGAAACTGT-ATAC
10116662 ATAATTAGAAACTGTATAC
1 --AATTAGAAACTGTATAC
10116681 AATTAGAA
1 AATTAGAA
10116689 CTCTAAGATT
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
16 3 0.09
17 18 0.51
19 9 0.26
20 5 0.14
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.28
Consensus pattern (17 bp):
AATTAGAAACTGTATAC
Found at i:10117600 original size:26 final size:26
Alignment explanation
Indices: 10117571--10117621 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
10117561 AATATATGAA
10117571 TAATATAATATATAAAAAACACTAAG
1 TAATATAATATATAAAAAACACTAAG
*
10117597 TAATATAATATATGAAAAACACTAA
1 TAATATAATATATAAAAAACACTAA
10117622 CTTAACTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.61, C:0.08, G:0.04, T:0.27
Consensus pattern (26 bp):
TAATATAATATATAAAAAACACTAAG
Found at i:10121170 original size:4 final size:4
Alignment explanation
Indices: 10121157--10121195 Score: 69
Period size: 4 Copynumber: 9.8 Consensus size: 4
10121147 AATCAAGTAA
*
10121157 ACAT ATAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA
10121196 CATTTTTCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ACAT
Found at i:10142474 original size:27 final size:26
Alignment explanation
Indices: 10142444--10142494 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
10142434 ACTAAAGCAT
* *
10142444 ATTGACGATAAAGTTAAAAATAAATAA
1 ATTGA-GAGAAAGTTAAAAAAAAATAA
*
10142471 ATTGAGAGAAATTTAAAAAAAAAT
1 ATTGAGAGAAAGTTAAAAAAAAAT
10142495 TAGAGTCAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.61, C:0.02, G:0.12, T:0.25
Consensus pattern (26 bp):
ATTGAGAGAAAGTTAAAAAAAAATAA
Found at i:10143024 original size:23 final size:24
Alignment explanation
Indices: 10142996--10143043 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
10142986 GTTTTGGTGC
*
10142996 TGTTATTTTT-CTGCTGTTTTTGT
1 TGTTATTTTTGCTACTGTTTTTGT
*
10143019 TGTTATTTTTGCTATTGTTTTTGT
1 TGTTATTTTTGCTACTGTTTTTGT
10143043 T
1 T
10143044 ATTGGTACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 10 0.45
24 12 0.55
ACGTcount: A:0.06, C:0.06, G:0.17, T:0.71
Consensus pattern (24 bp):
TGTTATTTTTGCTACTGTTTTTGT
Found at i:10143042 original size:21 final size:22
Alignment explanation
Indices: 10142996--10143046 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 22
10142986 GTTTTGGTGC
*
10142996 TGTTATTTTTCTGCTGTTTTTGT
1 TGTTA-TTTTCTGCTATTTTTGT
10143019 TGTTATTTT-TGCTATTGTTT-T
1 TGTTATTTTCTGCTATT-TTTGT
10143040 TGTTATT
1 TGTTATT
10143047 GGTACTGGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 14 0.54
22 7 0.27
23 5 0.19
ACGTcount: A:0.08, C:0.06, G:0.16, T:0.71
Consensus pattern (22 bp):
TGTTATTTTCTGCTATTTTTGT
Found at i:10144325 original size:98 final size:99
Alignment explanation
Indices: 10144141--10144337 Score: 236
Period size: 98 Copynumber: 2.0 Consensus size: 99
10144131 TATTTATTGA
* * *
10144141 TTAACTCCGATTGGGTCATTGCTTTAGTTCAGTTCAGAAAACGTGAAAATTAAGGTTACTTTAAG
1 TTAACTCCGATTGCGTCACTGCTTTAGTTCAGTTCAGAAAACGTGAAAATTAAGGTTACTTTAAC
*
10144206 ATTGGAGTATTGATTAATTACTTTATAATTCAAT
66 ATCGGAGTATTGATTAATTACTTTATAATTCAAT
* * * * * * * *
10144240 TTAATTCCGATTGCGTCACTGTTTTGGTTCAGTT-AGAAAATGTGAGAGTT-TGGATTTCTTTAA
1 TTAACTCCGATTGCGTCACTGCTTTAGTTCAGTTCAGAAAACGTGAAAATTAAGG-TTACTTTAA
* * *
10144303 CATCGGATTATTTATTAGTTACTTTATAATTCAAT
65 CATCGGAGTATTGATTAATTACTTTATAATTCAAT
10144338 AGGTATTTGA
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
97 2 0.02
98 51 0.62
99 29 0.35
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.42
Consensus pattern (99 bp):
TTAACTCCGATTGCGTCACTGCTTTAGTTCAGTTCAGAAAACGTGAAAATTAAGGTTACTTTAAC
ATCGGAGTATTGATTAATTACTTTATAATTCAAT
Found at i:10161693 original size:22 final size:21
Alignment explanation
Indices: 10161668--10161720 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
10161658 TGGAGTGTCA
*
10161668 TTAGTATATTATTAAAGTTTTG
1 TTAGTAAATT-TTAAAGTTTTG
* *
10161690 TTAGAAAATTTTAACGTTTTG
1 TTAGTAAATTTTAAAGTTTTG
* *
10161711 ATAGTTAATT
1 TTAGTAAATT
10161721 AATTAAAAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 17 0.68
22 8 0.32
ACGTcount: A:0.34, C:0.02, G:0.13, T:0.51
Consensus pattern (21 bp):
TTAGTAAATTTTAAAGTTTTG
Found at i:10162885 original size:42 final size:42
Alignment explanation
Indices: 10162815--10162928 Score: 133
Period size: 42 Copynumber: 2.7 Consensus size: 42
10162805 TGTTGACTCA
* * * *
10162815 TATGAGTTTCAGTTTAACCCTATT-GGTTTTCGTTCAGCTCT
1 TATGAGCTTCAGTTTAACCCTTTTGGGTTTCCATTCAGCTCT
*
10162856 CT-TGAGCTTCAGTTTAACCTTTTTGGGTTTCCATTCAGCTCT
1 -TATGAGCTTCAGTTTAACCCTTTTGGGTTTCCATTCAGCTCT
* * *
10162898 TATGAGCTTCCGTTCAACCCTTATGGGTTTC
1 TATGAGCTTCAGTTTAACCCTTTTGGGTTTC
10162929 TGTTTAGCAC
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
41 20 0.33
42 41 0.67
ACGTcount: A:0.16, C:0.23, G:0.18, T:0.44
Consensus pattern (42 bp):
TATGAGCTTCAGTTTAACCCTTTTGGGTTTCCATTCAGCTCT
Found at i:10162913 original size:21 final size:21
Alignment explanation
Indices: 10162884--10162949 Score: 51
Period size: 21 Copynumber: 3.1 Consensus size: 21
10162874 CTTTTTGGGT
* *
10162884 TTCCATTCAGCTCTTATGAGC
1 TTCCGTTCAGCACTTATGAGC
* * * *
10162905 TTCCGTTCAACCCTTATGGGT
1 TTCCGTTCAGCACTTATGAGC
* * *
10162926 TTCTGTTTAGCACTTATGTGC
1 TTCCGTTCAGCACTTATGAGC
10162947 TTC
1 TTC
10162950 TATGCAGCCT
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.15, C:0.26, G:0.17, T:0.42
Consensus pattern (21 bp):
TTCCGTTCAGCACTTATGAGC
Found at i:10162942 original size:42 final size:42
Alignment explanation
Indices: 10162815--10162949 Score: 112
Period size: 42 Copynumber: 3.2 Consensus size: 42
10162805 TGTTGACTCA
* * * * * *
10162815 TATGAGTTTCAGTTTAACCC-TATTGGTTTTCGTTCAGCTCT
1 TATGAGCTTCAGTTCAACCCTTATGGGTTTCCATTCAGCACT
* * * *
10162856 CT-TGAGCTTCAGTTTAACCTTTTTGGGTTTCCATTCAGCTCT
1 -TATGAGCTTCAGTTCAACCCTTATGGGTTTCCATTCAGCACT
* ** *
10162898 TATGAGCTTCCGTTCAACCCTTATGGGTTTCTGTTTAGCACT
1 TATGAGCTTCAGTTCAACCCTTATGGGTTTCCATTCAGCACT
*
10162940 TATGTGCTTC
1 TATGAGCTTC
10162950 TATGCAGCCT
Statistics
Matches: 76, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
41 17 0.22
42 59 0.78
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.44
Consensus pattern (42 bp):
TATGAGCTTCAGTTCAACCCTTATGGGTTTCCATTCAGCACT
Found at i:10170473 original size:21 final size:21
Alignment explanation
Indices: 10170408--10170474 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
10170398 AACTTTCGTG
*
10170408 TTAACTC-ATATGAGTTTTAGT
1 TTAACTCTAT-TGAGTTTCAGT
* *
10170429 TTAACCCTATTG-GTTTCCGT
1 TTAACTCTATTGAGTTTCAGT
*
10170449 TTAACTCTATTGAGCTTCAGT
1 TTAACTCTATTGAGTTTCAGT
10170470 TTAAC
1 TTAAC
10170475 CCTTATGGGT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
20 17 0.45
21 19 0.50
22 2 0.05
ACGTcount: A:0.24, C:0.18, G:0.13, T:0.45
Consensus pattern (21 bp):
TTAACTCTATTGAGTTTCAGT
Found at i:10170502 original size:21 final size:21
Alignment explanation
Indices: 10170476--10170544 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
10170466 CAGTTTAACC
*
10170476 CTTATGGGTTTCCGTTCAGCT
1 CTTATGGGTTTCCGTTCAGCA
* * * *
10170497 CTTATGAGCTTCCGTTCAACC
1 CTTATGGGTTTCCGTTCAGCA
* * *
10170518 CTTATAGGTTTCTGTTTAGCA
1 CTTATGGGTTTCCGTTCAGCA
10170539 CTTATG
1 CTTATG
10170545 TGCTTCTGTG
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.16, C:0.23, G:0.19, T:0.42
Consensus pattern (21 bp):
CTTATGGGTTTCCGTTCAGCA
Found at i:10170505 original size:42 final size:42
Alignment explanation
Indices: 10170416--10170550 Score: 148
Period size: 42 Copynumber: 3.2 Consensus size: 42
10170406 TGTTAACTCA
* * * *
10170416 TATGAGTTTTAGTTTAACCC-TATTGGTTTCCGTTTAACTC-
1 TATGAGCTTCAGTTTAACCCTTATAGGTTTCCGTTTAGCTCT
* *
10170456 TATTGAGCTTCAGTTTAACCCTTATGGGTTTCCGTTCAGCTCT
1 TA-TGAGCTTCAGTTTAACCCTTATAGGTTTCCGTTTAGCTCT
* * * *
10170499 TATGAGCTTCCGTTCAACCCTTATAGGTTTCTGTTTAGCACT
1 TATGAGCTTCAGTTTAACCCTTATAGGTTTCCGTTTAGCTCT
*
10170541 TATGTGCTTC
1 TATGAGCTTC
10170551 TGTGCAGCCT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
40 2 0.03
41 16 0.20
42 60 0.75
43 2 0.03
ACGTcount: A:0.18, C:0.21, G:0.17, T:0.44
Consensus pattern (42 bp):
TATGAGCTTCAGTTTAACCCTTATAGGTTTCCGTTTAGCTCT
Found at i:10171682 original size:42 final size:42
Alignment explanation
Indices: 10171593--10171688 Score: 111
Period size: 42 Copynumber: 2.3 Consensus size: 42
10171583 CCTATGACAT
* * *
10171593 TGGCGTGTCTCCTGGCCATGTGAGCCACACTACCGGCCACAC
1 TGGCGTGTGTCCTGGCCATGTGAGCCACACGACCGACCACAC
* * * ** *
10171635 GGGCGTGTGTCCTGGCCGTGTGAGCCATACGGGCGACTACAC
1 TGGCGTGTGTCCTGGCCATGTGAGCCACACGACCGACCACAC
10171677 TGGCGTGTGTCC
1 TGGCGTGTGTCC
10171689 CCTATTCCTA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.14, C:0.32, G:0.33, T:0.21
Consensus pattern (42 bp):
TGGCGTGTGTCCTGGCCATGTGAGCCACACGACCGACCACAC
Found at i:10184123 original size:25 final size:24
Alignment explanation
Indices: 10184073--10184124 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
10184063 TTGTCTTGAC
** * *
10184073 TATGTATTTGGTTTATGTTTGGGT
1 TATGTATTTGGACTATGTTAGCGT
10184097 TATGTAATTTGGACTATGTTAGCGT
1 TATGT-ATTTGGACTATGTTAGCGT
10184122 TAT
1 TAT
10184125 ATTTGACTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.19, C:0.04, G:0.25, T:0.52
Consensus pattern (24 bp):
TATGTATTTGGACTATGTTAGCGT
Found at i:10187558 original size:12 final size:12
Alignment explanation
Indices: 10187541--10187584 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
10187531 GGACACACAG
10187541 CCGTGTCCCAGC
1 CCGTGTCCCAGC
*
10187553 CCGTGTCCTTA-C
1 CCGTGTCC-CAGC
10187565 CCGTGTCCCAGC
1 CCGTGTCCCAGC
10187577 CCGTGTCC
1 CCGTGTCC
10187585 TTACCCGTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 1 0.04
12 26 0.93
13 1 0.04
ACGTcount: A:0.07, C:0.48, G:0.23, T:0.23
Consensus pattern (12 bp):
CCGTGTCCCAGC
Found at i:10187573 original size:24 final size:24
Alignment explanation
Indices: 10187541--10187594 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
10187531 GGACACACAG
10187541 CCGTGTCCCAGCCCGTGTCCTTAC
1 CCGTGTCCCAGCCCGTGTCCTTAC
10187565 CCGTGTCCCAGCCCGTGTCCTTAC
1 CCGTGTCCCAGCCCGTGTCCTTAC
10187589 CCGTGT
1 CCGTGT
10187595 AACTCTCTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.07, C:0.44, G:0.22, T:0.26
Consensus pattern (24 bp):
CCGTGTCCCAGCCCGTGTCCTTAC
Found at i:10187591 original size:12 final size:12
Alignment explanation
Indices: 10187552--10187594 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
10187542 CGTGTCCCAG
10187552 CCCGTGTCCTTA
1 CCCGTGTCCTTA
*
10187564 CCCGTGTCC-CA
1 CCCGTGTCCTTA
10187575 GCCCGTGTCCTTA
1 -CCCGTGTCCTTA
10187588 CCCGTGT
1 CCCGTGT
10187595 AACTCTCTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 1 0.04
12 25 0.93
13 1 0.04
ACGTcount: A:0.07, C:0.44, G:0.21, T:0.28
Consensus pattern (12 bp):
CCCGTGTCCTTA
Found at i:10188797 original size:24 final size:25
Alignment explanation
Indices: 10188695--10188799 Score: 83
Period size: 25 Copynumber: 4.2 Consensus size: 25
10188685 ATGCTCATAC
* * *
10188695 GAGCACATA-AACTGGAAGCTCTTTT
1 GAGC-CATATAACAGGAAGCTCATGT
10188720 GAGCCATATAACAGGAAGCTCATGT
1 GAGCCATATAACAGGAAGCTCATGT
* * * *
10188745 GAGTCATGTAAC-GAGAAGCTC-CGAA
1 GAGCCATATAACAG-GAAGCTCATG-T
*
10188770 GAGCCAT-TAACAGGAAACTCATGT
1 GAGCCATATAACAGGAAGCTCATGT
10188794 GAGCCA
1 GAGCCA
10188800 ATATCTGGAA
Statistics
Matches: 64, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
24 22 0.34
25 42 0.66
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (25 bp):
GAGCCATATAACAGGAAGCTCATGT
Found at i:10188848 original size:24 final size:24
Alignment explanation
Indices: 10188794--10188849 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
10188784 AAACTCATGT
* * *
10188794 GAGCCAATATCTGGAAGGTTAAGC
1 GAGCCAATATCGGGAAGCTTAAGA
*
10188818 GACCCAATATCGGGAAGCTCT-AGA
1 GAGCCAATATCGGGAAGCT-TAAGA
10188842 GAGCCAAT
1 GAGCCAAT
10188850 TAATTAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 25 0.96
25 1 0.04
ACGTcount: A:0.34, C:0.21, G:0.27, T:0.18
Consensus pattern (24 bp):
GAGCCAATATCGGGAAGCTTAAGA
Found at i:10192514 original size:15 final size:16
Alignment explanation
Indices: 10192489--10192518 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
10192479 TTAAGGATAT
10192489 TTAATAAAATTTATTA
1 TTAATAAAATTTATTA
10192505 TTAA-AAAATTTATT
1 TTAATAAAATTTATT
10192519 TAATACCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTAATAAAATTTATTA
Found at i:10192521 original size:13 final size:14
Alignment explanation
Indices: 10192486--10192523 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
10192476 TGATTAAGGA
10192486 TATTTAATAAAATT
1 TATTTAATAAAATT
10192500 TATTATTAA-AAAATT
1 TA-T-TTAATAAAATT
10192515 TATTTAATA
1 TATTTAATA
10192524 CCCATAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
13 4 0.19
14 4 0.19
15 9 0.43
16 4 0.19
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TATTTAATAAAATT
Found at i:10235967 original size:18 final size:18
Alignment explanation
Indices: 10235944--10235986 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
10235934 ACCCAATCCA
**
10235944 AACCCAAGTATTCAACCC
1 AACCCAAGTACACAACCC
*
10235962 AACCCAATTACACAACCC
1 AACCCAAGTACACAACCC
10235980 AACCCAA
1 AACCCAA
10235987 TCATAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.42, G:0.02, T:0.12
Consensus pattern (18 bp):
AACCCAAGTACACAACCC
Found at i:10236104 original size:9 final size:9
Alignment explanation
Indices: 10236090--10236147 Score: 64
Period size: 9 Copynumber: 6.4 Consensus size: 9
10236080 GTAGTGATTC
10236090 AATTCGGTT
1 AATTCGGTT
*
10236099 AATTCGGGT
1 AATTCGGTT
*
10236108 AATTTGGTT
1 AATTCGGTT
10236117 AATTCGAG-T
1 AATTCG-GTT
*
10236126 AATCCGGTT
1 AATTCGGTT
*
10236135 AATTCGATT
1 AATTCGGTT
10236144 AATT
1 AATT
10236148 TTTAACCAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
8 1 0.03
9 38 0.95
10 1 0.03
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (9 bp):
AATTCGGTT
Found at i:10236116 original size:18 final size:18
Alignment explanation
Indices: 10236090--10236147 Score: 80
Period size: 18 Copynumber: 3.2 Consensus size: 18
10236080 GTAGTGATTC
*
10236090 AATTCGGTTAATTCGGGT
1 AATTCGGTTAATTCGAGT
*
10236108 AATTTGGTTAATTCGAGT
1 AATTCGGTTAATTCGAGT
* *
10236126 AATCCGGTTAATTCGATT
1 AATTCGGTTAATTCGAGT
10236144 AATT
1 AATT
10236148 TTTAACCAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (18 bp):
AATTCGGTTAATTCGAGT
Found at i:10242792 original size:98 final size:98
Alignment explanation
Indices: 10242623--10242819 Score: 322
Period size: 98 Copynumber: 2.0 Consensus size: 98
10242613 AAACAATAAA
* * *
10242623 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAACCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAAAATCAACTCATCCAAGATTTAAGAAACCACACCCAATACGTTAGGGCACAATC
*
10242688 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAAAATTTCCTTT
* * *
10242721 ACTTTAAAAGAAAATCAACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAAAATCAACTCATCCAAGATTTAAGAAACCACACCCAATACGTTAGGGCACAATC
*
10242786 CCTTTAGAATCTCAAACTCGGAAAATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAAAATTTCCTTT
10242819 A
1 A
10242820 TGATTTTTTT
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 91 1.00
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAAAATCAACTCATCCAAGATTTAAGAAACCACACCCAATACGTTAGGGCACAATC
CCTTTAGAATCCCAAACTCGGAAAATTTCCTTT
Found at i:10243362 original size:28 final size:28
Alignment explanation
Indices: 10243305--10243363 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
10243295 ATAATAACAA
* *
10243305 TAATTTCAAAAAAAATTATTTGAAATAC
1 TAATTTCAAAAAAAATTATGTGAAAGAC
* *
10243333 TAATTTTAAGAAAAA-TATGTGAAAGGAC
1 TAATTTCAAAAAAAATTATGTGAAA-GAC
10243361 TAA
1 TAA
10243364 ATTGGAACAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 8 0.31
28 18 0.69
ACGTcount: A:0.53, C:0.05, G:0.10, T:0.32
Consensus pattern (28 bp):
TAATTTCAAAAAAAATTATGTGAAAGAC
Found at i:10247897 original size:59 final size:59
Alignment explanation
Indices: 10247830--10247947 Score: 218
Period size: 59 Copynumber: 2.0 Consensus size: 59
10247820 ATCAAACTCC
*
10247830 TTACCTCTCAACCAAACAAATGTAGGTTTCAACTTAAAATTTTCAATATTAAGTAATAA
1 TTACCTCTCAACCAAACAAATGTAGGTTTCAACTTAAAATTTTCAAAATTAAGTAATAA
*
10247889 TTACCTCTCAACCAAACGAATGTAGGTTTCAACTTAAAATTTTCAAAATTAAGTAATAA
1 TTACCTCTCAACCAAACAAATGTAGGTTTCAACTTAAAATTTTCAAAATTAAGTAATAA
10247948 GTAACTAACT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (59 bp):
TTACCTCTCAACCAAACAAATGTAGGTTTCAACTTAAAATTTTCAAAATTAAGTAATAA
Found at i:10264687 original size:73 final size:73
Alignment explanation
Indices: 10264610--10264747 Score: 161
Period size: 73 Copynumber: 1.9 Consensus size: 73
10264600 CTCATAAGAG
* * * *
10264610 CCATAT-TCAAGAAGCTCATGTGAGTCAATAACGGGTAGCTCCGAAAAGCCATTAATCGAGAAGC
1 CCATATATCAAGAAGCTCAAGAGAG-CAATAACAGGTAGCTCCGAAAAGCCATTAATCAAGAAGC
10264674 TTCGGATAA
65 TTCGGATAA
* * * * * * *
10264683 CCATATATCAGGAAGTTCAAGAGAGCCATATCAGGTAGCTCTGGAGAGCCATTAATCAAGAAGCT
1 CCATATATCAAGAAGCTCAAGAGAGCAATAACAGGTAGCTCCGAAAAGCCATTAATCAAGAAGCT
10264748 CACAAAGATC
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
73 39 0.74
74 14 0.26
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (73 bp):
CCATATATCAAGAAGCTCAAGAGAGCAATAACAGGTAGCTCCGAAAAGCCATTAATCAAGAAGCT
TCGGATAA
Found at i:10264747 original size:25 final size:23
Alignment explanation
Indices: 10264703--10264748 Score: 56
Period size: 25 Copynumber: 1.9 Consensus size: 23
10264693 GGAAGTTCAA
* *
10264703 GAGAGCCATATCAGGTAGCTCTG
1 GAGAGCCATATCAAGAAGCTCTG
10264726 GAGAGCCATTAATCAAGAAGCTC
1 GAGAGCCA-T-ATCAAGAAGCTC
10264749 ACAAAGATCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 1 0.05
25 10 0.53
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.20
Consensus pattern (23 bp):
GAGAGCCATATCAAGAAGCTCTG
Found at i:10264794 original size:26 final size:26
Alignment explanation
Indices: 10264742--10264801 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
10264732 CATTAATCAA
* *
10264742 GAAGCTCACAAAGATCCTTTAATTGG
1 GAAGCTCACAAAGAGCCTATAATTGG
*
10264768 GAAGCTCACGAAGAGCCATATAA-TGG
1 GAAGCTCACAAAGAGCC-TATAATTGG
*
10264794 GACGCTCA
1 GAAGCTCA
10264802 TAAGAGCTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (26 bp):
GAAGCTCACAAAGAGCCTATAATTGG
Found at i:10265409 original size:11 final size:11
Alignment explanation
Indices: 10265393--10265420 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
10265383 AAAATTCAGA
10265393 AATTTTCCATG
1 AATTTTCCATG
10265404 AATTTTCCATG
1 AATTTTCCATG
10265415 AATTTT
1 AATTTT
10265421 ACAATTTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.29, C:0.14, G:0.07, T:0.50
Consensus pattern (11 bp):
AATTTTCCATG
Found at i:10265755 original size:13 final size:13
Alignment explanation
Indices: 10265737--10265764 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
10265727 TTTTATTTTA
10265737 TTATTTATCATCT
1 TTATTTATCATCT
10265750 TTATTTATCATCT
1 TTATTTATCATCT
10265763 TT
1 TT
10265765 CCAAATTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.64
Consensus pattern (13 bp):
TTATTTATCATCT
Found at i:10270151 original size:16 final size:19
Alignment explanation
Indices: 10270124--10270165 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 19
10270114 ACTTTATACT
10270124 ATTTTTTAATAA-TTTT-A
1 ATTTTTTAATAATTTTTGA
10270141 ATTTTTT-ATAATTTTTGA
1 ATTTTTTAATAATTTTTGA
10270159 ATTTTTT
1 ATTTTTT
10270166 TTATAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.17
17 11 0.48
18 8 0.35
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (19 bp):
ATTTTTTAATAATTTTTGA
Found at i:10270167 original size:20 final size:20
Alignment explanation
Indices: 10270142--10270181 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
10270132 ATAATTTTAA
* *
10270142 TTTTTTATAATTTTTGAATT
1 TTTTTTATAAATTTTAAATT
10270162 TTTTTTATAAATTTTAAATT
1 TTTTTTATAAATTTTAAATT
10270182 ATTTATTGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (20 bp):
TTTTTTATAAATTTTAAATT
Found at i:10278940 original size:20 final size:20
Alignment explanation
Indices: 10278915--10278971 Score: 57
Period size: 18 Copynumber: 3.0 Consensus size: 20
10278905 TATATCAAAC
10278915 TCATATTAAGAAAAAGAAAA
1 TCATATTAAGAAAAAGAAAA
* * *
10278935 TCATA-TATGAAACA-ACAA
1 TCATATTAAGAAAAAGAAAA
*
10278953 -CATATTAGGAAAAAGAAAA
1 TCATATTAAGAAAAAGAAAA
10278972 AAATAATAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
17 4 0.14
18 10 0.34
19 10 0.34
20 5 0.17
ACGTcount: A:0.61, C:0.09, G:0.11, T:0.19
Consensus pattern (20 bp):
TCATATTAAGAAAAAGAAAA
Found at i:10290266 original size:23 final size:21
Alignment explanation
Indices: 10290231--10290273 Score: 50
Period size: 23 Copynumber: 2.0 Consensus size: 21
10290221 TTCTGTCACA
*
10290231 ATTTATCATAATAATTTATTTTG
1 ATTTATCAAAAT-A-TTATTTTG
*
10290254 ATTTATTAAAATATTATTTT
1 ATTTATCAAAATATTATTTT
10290274 TAATTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 1 0.06
23 10 0.56
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
ATTTATCAAAATATTATTTTG
Found at i:10291245 original size:13 final size:13
Alignment explanation
Indices: 10291229--10291253 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10291219 AAAAAAAAGT
10291229 ATTAATTAAAAAC
1 ATTAATTAAAAAC
10291242 ATTAATTAAAAA
1 ATTAATTAAAAA
10291254 TTCAAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAC
Found at i:10294120 original size:69 final size:71
Alignment explanation
Indices: 10293994--10294124 Score: 178
Period size: 69 Copynumber: 1.9 Consensus size: 71
10293984 GTTCTGGACA
* *
10293994 TTGTTTTGATAGTCTGCTGGAAAATGCTATTTTAGTTTGTTAGTGAGTAGAAGATGAAACTGTTG
1 TTGTTTTGATAGTCTGCTGGAAAATGCTATTTGAGTTTGTTAGTCAGTAGAAGATGAAACTGTTG
10294059 TGGCAG
66 TGGCAG
* ** *
10294065 TTGTTTTGATTGTCTGCTGGAACTTG-T-TCTTGA-TTTGTTAGTCAGTAGAATATGAAACTG
1 TTGTTTTGATAGTCTGCTGGAAAATGCTAT-TTGAGTTTGTTAGTCAGTAGAAGATGAAACTG
10294125 GAACTTTATT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
69 26 0.49
70 4 0.08
71 23 0.43
ACGTcount: A:0.24, C:0.08, G:0.26, T:0.42
Consensus pattern (71 bp):
TTGTTTTGATAGTCTGCTGGAAAATGCTATTTGAGTTTGTTAGTCAGTAGAAGATGAAACTGTTG
TGGCAG
Found at i:10298537 original size:18 final size:17
Alignment explanation
Indices: 10298509--10298543 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10298499 ATTATTAAGA
*
10298509 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
10298526 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
10298544 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:10298661 original size:16 final size:17
Alignment explanation
Indices: 10298629--10298666 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
10298619 ATTATTAAGA
10298629 ATTT-TATTAAATTATAT
1 ATTTATATTAAA-TATAT
10298646 ATTTATATTAAA-ATAT
1 ATTTATATTAAATATAT
10298662 ATTTA
1 ATTTA
10298667 ATAAAAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 9 0.45
17 4 0.20
18 7 0.35
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTTATATTAAATATAT
Found at i:10301083 original size:30 final size:29
Alignment explanation
Indices: 10301047--10301112 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 29
10301037 ATACTTTACA
10301047 AAAATTAGATC-AAATCAAAATTTCATATAT
1 AAAATTAGA-CAAAATCAAAATTT-ATATAT
*
10301077 AAAATTATACAAAATCAAAATTTATATAT
1 AAAATTAGACAAAATCAAAATTTATATAT
*
10301106 ACAATTA
1 AAAATTA
10301113 CACATTAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 13 0.39
30 20 0.61
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (29 bp):
AAAATTAGACAAAATCAAAATTTATATAT
Found at i:10319315 original size:2 final size:2
Alignment explanation
Indices: 10319310--10319343 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
10319300 TTAAAAAACA
10319310 AT AT AT -T AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10319344 TTATCAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 28 0.93
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:10319586 original size:6 final size:6
Alignment explanation
Indices: 10319575--10319600 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
10319565 AGGTTTTAAA
10319575 ATTTAT ATTTAT ATTTAT ATTTAT AT
1 ATTTAT ATTTAT ATTTAT ATTTAT AT
10319601 ATTAGAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
ATTTAT
Found at i:10321995 original size:19 final size:19
Alignment explanation
Indices: 10321973--10322025 Score: 52
Period size: 21 Copynumber: 2.7 Consensus size: 19
10321963 ATTAATATAT
10321973 TTTAAATATATTAAAAAAA
1 TTTAAATATATTAAAAAAA
* * *
10321992 TTTAAAAATTAATTACAATAA
1 TTTAAATA-T-ATTAAAAAAA
*
10322013 TTAAAATATATTA
1 TTTAAATATATTA
10322026 TTTAAAAATT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
19 11 0.41
20 2 0.07
21 14 0.52
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
TTTAAATATATTAAAAAAA
Found at i:10322006 original size:21 final size:23
Alignment explanation
Indices: 10321982--10322033 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 23
10321972 TTTTAAATAT
*
10321982 ATTAAAAAAATTTAAA-A-ATTA
1 ATTAAAAAAATTAAAATATATTA
* *
10322003 ATTACAATAATTAAAATATATTA
1 ATTAAAAAAATTAAAATATATTA
*
10322026 TTTAAAAA
1 ATTAAAAA
10322034 TTAAACTCGT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
21 13 0.57
22 1 0.04
23 9 0.39
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (23 bp):
ATTAAAAAAATTAAAATATATTA
Found at i:10322262 original size:16 final size:15
Alignment explanation
Indices: 10322241--10322324 Score: 67
Period size: 16 Copynumber: 5.9 Consensus size: 15
10322231 TAAATATATA
10322241 TAAAAATATATTTGAT
1 TAAAAATATATTT-AT
10322257 TAAAAATATATATT-T
1 TAAAAATATAT-TTAT
* *
10322272 T---TATATATATA-
1 TAAAAATATATTTAT
10322283 TAAAAATATATTTGAT
1 TAAAAATATATTT-AT
10322299 TAAAAATATA--TA-
1 TAAAAATATATTTAT
10322311 TAAAAATATATTTA
1 TAAAAATATATTTA
10322325 ATATATATAA
Statistics
Matches: 55, Mismatches: 4, Indels: 20
0.70 0.05 0.25
Matches are distributed among these distances:
11 2 0.04
12 16 0.29
13 1 0.02
14 10 0.18
15 3 0.05
16 21 0.38
17 2 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (15 bp):
TAAAAATATATTTAT
Found at i:10322284 original size:42 final size:45
Alignment explanation
Indices: 10322227--10322373 Score: 167
Period size: 49 Copynumber: 3.2 Consensus size: 45
10322217 GGCCCGACCC
*
10322227 ATATTAAATATATATAAAAATATATTTGATT-AAAA-ATATATAT
1 ATATTTAATATATATAAAAATATATTTGATTAAAAATATATATAT
10322270 -T-TTTATATATATATAAAAATATATTTGATTAAAAATATATATAAAAAT
1 ATATTTA-ATATATATAAAAATATATTTGATTAAAAATATATAT----AT
* * * *
10322318 ATATTTAATATATATAAATATATATTTGATTAAAAATAAAAAAAAT
1 ATATTTAATATATATAAAAATATATTTGATTAAAAAT-ATATATAT
10322364 ATATTTAATA
1 ATATTTAATA
10322374 CGTAATTCGG
Statistics
Matches: 89, Mismatches: 5, Indels: 17
0.80 0.05 0.15
Matches are distributed among these distances:
41 3 0.03
42 25 0.28
43 4 0.04
44 6 0.07
46 12 0.13
48 2 0.02
49 30 0.34
50 7 0.08
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (45 bp):
ATATTTAATATATATAAAAATATATTTGATTAAAAATATATATAT
Found at i:10322308 original size:28 final size:31
Alignment explanation
Indices: 10322276--10322342 Score: 104
Period size: 28 Copynumber: 2.3 Consensus size: 31
10322266 ATATTTTTAT
*
10322276 ATATATATAAAAATATATTTGAT-TA-A-AA
1 ATATATATAAAAATATATTTAATATATATAA
10322304 ATATATATAAAAATATATTTAATATATATAA
1 ATATATATAAAAATATATTTAATATATATAA
10322335 ATATATAT
1 ATATATAT
10322343 TTGATTAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
28 22 0.63
29 2 0.06
30 1 0.03
31 10 0.29
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (31 bp):
ATATATATAAAAATATATTTAATATATATAA
Found at i:10322342 original size:10 final size:10
Alignment explanation
Indices: 10322302--10322342 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
10322292 ATTTGATTAA
10322302 AAATATATAT
1 AAATATATAT
*
10322312 AAAAATATATT
1 AAATATATA-T
*
10322323 TAATATATAT
1 AAATATATAT
10322333 AAATATATAT
1 AAATATATAT
10322343 TTGATTAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
10 18 0.69
11 8 0.31
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
AAATATATAT
Found at i:10322613 original size:17 final size:17
Alignment explanation
Indices: 10322591--10322629 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
10322581 TATGTTTATA
*
10322591 ATTTAAAAAAAATACTC
1 ATTTAAAAAAAACACTC
* *
10322608 ATTTAAAGAAAACACTT
1 ATTTAAAAAAAACACTC
10322625 ATTTA
1 ATTTA
10322630 TGTTTATAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.54, C:0.10, G:0.03, T:0.33
Consensus pattern (17 bp):
ATTTAAAAAAAACACTC
Found at i:10323235 original size:19 final size:18
Alignment explanation
Indices: 10323207--10323245 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 18
10323197 TCAATTAAAC
10323207 TTGTTCAATTATT-AATTT
1 TTGTTCAATT-TTCAATTT
10323225 TTGTCTCAATTTTCAATTT
1 TTGT-TCAATTTTCAATTT
10323244 TT
1 TT
10323246 ATCAATTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.23, C:0.10, G:0.05, T:0.62
Consensus pattern (18 bp):
TTGTTCAATTTTCAATTT
Found at i:10331692 original size:9 final size:9
Alignment explanation
Indices: 10331678--10331711 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
10331668 TCAAATATAC
*
10331678 TAAAAATAT
1 TAAAAATTT
10331687 TAAAAATTT
1 TAAAAATTT
10331696 TAAAAAATTT
1 T-AAAAATTT
10331706 TAAAAA
1 TAAAAA
10331712 AAATTATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (9 bp):
TAAAAATTT
Found at i:10331713 original size:11 final size:10
Alignment explanation
Indices: 10331679--10331712 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
10331669 CAAATATACT
*
10331679 AAAAATATT-
1 AAAAATTTTA
10331688 AAAAATTTTA
1 AAAAATTTTA
10331698 AAAAATTTTA
1 AAAAATTTTA
10331708 AAAAA
1 AAAAA
10331713 AATTATTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (10 bp):
AAAAATTTTA
Found at i:10335669 original size:50 final size:49
Alignment explanation
Indices: 10335450--10335733 Score: 327
Period size: 51 Copynumber: 5.6 Consensus size: 49
10335440 TATTGATGAA
* ***
10335450 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAA-CG-TAAAACTTGGT
* * ***
10335501 CACATGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAA-CG-TAAAACTTGGT
* * * * *
10335552 CACATGTGTAGTACTAAGTGAATGCTACTATGTGTACCG-AAAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-AACGTAAAA-C-TTGGT
*
10335603 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACAGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAAC-GTAAAACTTGGT
*
10335653 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAA-CGTAAAACTTGGT
*
10335703 TACGTGTGTAGTACTATGTGAAGGCTACTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTAC
10335734 ACGTATCGAA
Statistics
Matches: 211, Mismatches: 16, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
49 3 0.01
50 84 0.40
51 119 0.56
52 5 0.02
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (49 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACGTAAAACTTGGT
Found at i:10336003 original size:37 final size:38
Alignment explanation
Indices: 10335934--10336006 Score: 112
Period size: 37 Copynumber: 1.9 Consensus size: 38
10335924 ATGTGTGGAA
* *
10335934 TTGAATTGAATATTGACTTGAAAATGACAAAGTGAATT
1 TTGAATTGAATACTGACTTGAAAATGAAAAAGTGAATT
*
10335972 TTGAATTGAATACTGA-TTGAAAGTGAAAAAGTGAA
1 TTGAATTGAATACTGACTTGAAAATGAAAAAGTGAA
10336007 ATTATGAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
37 17 0.53
38 15 0.47
ACGTcount: A:0.44, C:0.04, G:0.21, T:0.32
Consensus pattern (38 bp):
TTGAATTGAATACTGACTTGAAAATGAAAAAGTGAATT
Found at i:10338282 original size:311 final size:308
Alignment explanation
Indices: 10337712--10338328 Score: 948
Period size: 311 Copynumber: 2.0 Consensus size: 308
10337702 TTTGATACCA
10337712 ATTTATTAAAAATAGAACGTCGATAATGACAATGTATCACAAAGAAAAAGAGAGAGAAAAATAAA
1 ATTTATTAAAAATAGAACGTCGATAATGACAATGTATCACAAAGAAAAAGAGAGAGAAAAATAAA
* * * *
10337777 AAACACAGATTTTACGTGAAAACACTTTCGTGAAAAAGCCACGGGGCAGAGTAGAAGATAATTCA
66 AAACACAGATTTTACGTGAAAACACTTTCGGGAAAAAACCACAGGGCAGAGGAGAAGATAATTCA
* * * *
10337842 CTATGTCGAATTCGAATAATTACTAGAGGAGTAGACTATGTCTATTTATAGGCTTGTAAAATCAT
131 CTATGTCGAATTCAAATAATTACAAGAGGAGTAGACTATGTCTATTTATAGACTTGTAAAACCAT
*
10337907 ATTCTAATAGGAGTGTAGTAAGAGTGAAACACCTTATTCTAATCAATATAAAATAGAAGGAGTTT
196 ATTCTAATAGGAATGTAGTAAGAGTGAAACACCTTATTCTAATCAATATAAAATAGAAGGAGTTT
* *
10337972 AATATGGTTTAAAAAACCTTATTCTAAAATAAAATAAAAGAAGTGTAGT
261 AATAAGGTTT-AAAAACCTTATTCTAAAATAAAATAAAAAAAGTGTAGT
* * * * *
10338021 ATTTGTTAGAAATAGAATGTCGGTAATGGCAATGTATCACAAAGAAAAAGAGAGAGAAAAATAAA
1 ATTTATTAAAAATAGAACGTCGATAATGACAATGTATCACAAAGAAAAAGAGAGAGAAAAATAAA
* * * * *
10338086 GAGCACACAGATTTTATGTGGAAACCCTTTCGGGAAAAAAATCA-AGGGCAGAGGAGAAGATAAT
66 -A-AACACAGATTTTACGTGAAAACACTTTCGGG-AAAAAACCACAGGGCAGAGGAGAAGATAAT
10338150 TCACTATGTCGAATTCAAATAATTACAAGAGGAGTAGACTATGTCTATTTATAGACTTGTAAAAC
128 TCACTATGTCGAATTCAAATAATTACAAGAGGAGTAGACTATGTCTATTTATAGACTTGTAAAAC
* * * *
10338215 CATGTTCTAATAGGAATGTAGTAAGATTGAAACACCTTATTCTAATCAATATCAAATAGATGGAG
193 CATATTCTAATAGGAATGTAGTAAGAGTGAAACACCTTATTCTAATCAATATAAAATAGAAGGAG
**
10338280 TTTAATAAGGTTTTTAAACCTTATTCTAAAATAAAATAAAAAAAGTGTA
258 TTTAATAAGGTTTAAAAACCTTATTCTAAAATAAAATAAAAAAAGTGTA
10338329 ATTCTATAGG
Statistics
Matches: 278, Mismatches: 27, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
309 60 0.22
310 34 0.12
311 177 0.64
312 7 0.03
ACGTcount: A:0.44, C:0.11, G:0.18, T:0.27
Consensus pattern (308 bp):
ATTTATTAAAAATAGAACGTCGATAATGACAATGTATCACAAAGAAAAAGAGAGAGAAAAATAAA
AAACACAGATTTTACGTGAAAACACTTTCGGGAAAAAACCACAGGGCAGAGGAGAAGATAATTCA
CTATGTCGAATTCAAATAATTACAAGAGGAGTAGACTATGTCTATTTATAGACTTGTAAAACCAT
ATTCTAATAGGAATGTAGTAAGAGTGAAACACCTTATTCTAATCAATATAAAATAGAAGGAGTTT
AATAAGGTTTAAAAACCTTATTCTAAAATAAAATAAAAAAAGTGTAGT
Found at i:10340381 original size:51 final size:50
Alignment explanation
Indices: 10340314--10340443 Score: 161
Period size: 55 Copynumber: 2.5 Consensus size: 50
10340304 AAAATAGTTG
* *
10340314 AAAGCTACAAAAGAGCTAATATATCAATATTTGGTACTACGAAATTAGATA
1 AAAGCT-CCAAAGAGCTAATATATCAATATTTGGTACTACAAAATTAGATA
*
10340365 AAAGCTCCAAACGAGCTAGCTAATATATCAATATTTGGTACTACAAAATTAGATG
1 AAAGCTCC-AA--AG--AGCTAATATATCAATATTTGGTACTACAAAATTAGATA
*
10340420 AAAGCTCCAGAATAGCTAATATAT
1 AAAGCTCCA-AAGAGCTAATATAT
10340444 TAGTATATGA
Statistics
Matches: 69, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
50 1 0.01
51 19 0.28
53 3 0.04
54 1 0.01
55 45 0.65
ACGTcount: A:0.45, C:0.15, G:0.14, T:0.27
Consensus pattern (50 bp):
AAAGCTCCAAAGAGCTAATATATCAATATTTGGTACTACAAAATTAGATA
Found at i:10341949 original size:7 final size:7
Alignment explanation
Indices: 10341939--10342024 Score: 154
Period size: 7 Copynumber: 12.0 Consensus size: 7
10341929 TCCTCTATCC
10341939 AGGGTTT
1 AGGGTTT
10341946 AGGGTTTT
1 AGGG-TTT
10341954 AGGGTTT
1 AGGGTTT
10341961 AGGGTTT
1 AGGGTTT
10341968 AGGGTTT
1 AGGGTTT
10341975 AGGGTTTT
1 AGGG-TTT
10341983 AGGGTTT
1 AGGGTTT
10341990 AGGGTTT
1 AGGGTTT
10341997 AGGGTTT
1 AGGGTTT
10342004 AGGGTTT
1 AGGGTTT
10342011 AGGGTTT
1 AGGGTTT
10342018 AGGGTTT
1 AGGGTTT
10342025 GCCTAAAATA
Statistics
Matches: 77, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
7 63 0.82
8 14 0.18
ACGTcount: A:0.14, C:0.00, G:0.42, T:0.44
Consensus pattern (7 bp):
AGGGTTT
Found at i:10341981 original size:29 final size:29
Alignment explanation
Indices: 10341939--10342024 Score: 165
Period size: 29 Copynumber: 3.0 Consensus size: 29
10341929 TCCTCTATCC
10341939 AGGGTTTAGGGTTTTAGGGTTTAGGGTTT
1 AGGGTTTAGGGTTTTAGGGTTTAGGGTTT
10341968 AGGGTTTAGGGTTTTAGGGTTTAGGGTTT
1 AGGGTTTAGGGTTTTAGGGTTTAGGGTTT
10341997 AGGGTTTAGGG-TTTAGGGTTTAGGGTTT
1 AGGGTTTAGGGTTTTAGGGTTTAGGGTTT
10342025 GCCTAAAATA
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
28 17 0.30
29 40 0.70
ACGTcount: A:0.14, C:0.00, G:0.42, T:0.44
Consensus pattern (29 bp):
AGGGTTTAGGGTTTTAGGGTTTAGGGTTT
Found at i:10343299 original size:25 final size:24
Alignment explanation
Indices: 10343247--10343303 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 24
10343237 TAGCTCGTAT
* * **
10343247 GAGCTTCCCGTTAATGGTTCTTCG
1 GAGCTTCCCGTTAATGGCTCATAA
10343271 GAGCTTCCCGTTACATGGCTCATAA
1 GAGCTTCCCGTTA-ATGGCTCATAA
10343296 GAGCTTCC
1 GAGCTTCC
10343304 TGTTTATGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 13 0.46
25 15 0.54
ACGTcount: A:0.18, C:0.28, G:0.23, T:0.32
Consensus pattern (24 bp):
GAGCTTCCCGTTAATGGCTCATAA
Found at i:10351657 original size:30 final size:30
Alignment explanation
Indices: 10351597--10351657 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
10351587 ATGTCTATGT
* **
10351597 AAATTATCATTGGTTTGGGATTTTTCTGGA
1 AAATTATCATTGGTCTGGGATTTTGATGGA
10351627 AAATTAAT-ATTGGTCTGGGATTTTGATGGA
1 AAATT-ATCATTGGTCTGGGATTTTGATGGA
10351657 A
1 A
10351658 GAGTATTGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.28, C:0.05, G:0.25, T:0.43
Consensus pattern (30 bp):
AAATTATCATTGGTCTGGGATTTTGATGGA
Done.