Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62681010
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1052928 characters in sequence are not A, C, G, or T
File 33 of 210
Found at i:10589794 original size:15 final size:16
Alignment explanation
Indices: 10589759--10589794 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
10589749 CTTTATATAT
10589759 TTTTTTATCCCTTCAA
1 TTTTTTATCCCTTCAA
**
10589775 TTTTTTATCTTTTCAA
1 TTTTTTATCCCTTCAA
10589791 TTTT
1 TTTT
10589795 CTTTCCTCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTTTATCCCTTCAA
Found at i:10592633 original size:15 final size:15
Alignment explanation
Indices: 10592613--10592642 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
10592603 TTTAAGACCC
10592613 ATTTTATATATGGGT
1 ATTTTATATATGGGT
10592628 ATTTTATATATGGGT
1 ATTTTATATATGGGT
10592643 CAGGCCTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (15 bp):
ATTTTATATATGGGT
Found at i:10594576 original size:114 final size:113
Alignment explanation
Indices: 10594401--10594613 Score: 354
Period size: 114 Copynumber: 1.9 Consensus size: 113
10594391 ATAATAAGCA
*
10594401 TTAGCGGCGTTTTCCAAAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTT
1 TTAGCGGCGTTTTCCAAAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTATGAGCTTT
*
10594466 TGGGGATTTAACGGCGTTTTTAAGAAAGCGCCGCTAATGTTCAGGGCT
66 CGGGGATTTAACGGCGTTTTTAAGAAAGCGCCGCTAATGTTCAGGGCT
** *
10594514 TTAGCGGCGTTTTTGAAAAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTATGAGCTT
1 TTAGCGGCGTTTTCCAAAAAGCGCCGC-AAAAAACCTAAGCCCAACGACGCCGTTTTATGAGCTT
* *
10594579 TCGGGGCTTTAGCGGCGTTTTTAAGAAAGCGCCGC
65 TCGGGGATTTAACGGCGTTTTTAAGAAAGCGCCGC
10594614 AAAAAAACAT
Statistics
Matches: 92, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
113 25 0.27
114 67 0.73
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (113 bp):
TTAGCGGCGTTTTCCAAAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTATGAGCTTT
CGGGGATTTAACGGCGTTTTTAAGAAAGCGCCGCTAATGTTCAGGGCT
Found at i:10594628 original size:73 final size:73
Alignment explanation
Indices: 10594509--10594667 Score: 257
Period size: 73 Copynumber: 2.2 Consensus size: 73
10594499 CTAATGTTCA
* * *
10594509 GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTATG
1 GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTATG
10594574 AGCTTTCG
66 AGCTTTCG
*
10594582 GGGCTTTAGCGGCGTTTTT-AAGAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTGT
1 GGGCTTTAGCGGCGTTTTTGAA-AAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTAT
10594646 GAGCTTTCG
65 GAGCTTTCG
*
10594655 GGGATTTAGCGGC
1 GGGCTTTAGCGGC
10594668 CAAAAAAATA
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
72 2 0.03
73 78 0.98
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (73 bp):
GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCAAAAAAACATAAGCCAAACGACGCCGTTTTATG
AGCTTTCG
Found at i:10594783 original size:13 final size:13
Alignment explanation
Indices: 10594765--10594789 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10594755 TAATAATAAA
10594765 TTTGTTTAGGGTT
1 TTTGTTTAGGGTT
10594778 TTTGTTTAGGGT
1 TTTGTTTAGGGT
10594790 ATATGATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.32, T:0.60
Consensus pattern (13 bp):
TTTGTTTAGGGTT
Found at i:10594856 original size:14 final size:14
Alignment explanation
Indices: 10594819--10594867 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
10594809 TAAGGTCGGT
* *
10594819 TTAGGGAGTATGGGT
1 TTAGGGATTAT-GGA
*
10594834 TTAGAGATTATGGA
1 TTAGGGATTATGGA
10594848 TTAGGGATTATGGA
1 TTAGGGATTATGGA
10594862 TTAGGG
1 TTAGGG
10594868 GTTGGAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 21 0.70
15 9 0.30
ACGTcount: A:0.27, C:0.00, G:0.39, T:0.35
Consensus pattern (14 bp):
TTAGGGATTATGGA
Found at i:10595953 original size:147 final size:147
Alignment explanation
Indices: 10595646--10595914 Score: 402
Period size: 147 Copynumber: 1.8 Consensus size: 147
10595636 AAATCAATTT
*
10595646 AAAAAAAGCCCCCTTTTAGCATAGAATAGCAAAACGGCGTAGTTTTGATCAAAATGAATTTTTTT
1 AAAAAAAG-CCCCTTTTAGCATAGAATAGCAAAACGGAGTAGTTTTGATCAAAATGAATTTTTTT
* **
10595711 GCGGCGCTTTTATGAAAAACGCCGCTAAAGGTAAGCAATAGCTGCGTTTTTATAAAAAAACGCCA
65 GCGGCGCTTTTATGAAAAACACCGCTAAAGGTAAGCAATAGCTGCGCCTTTATAAAAAAACGCCA
**
10595776 CAAAATAATTTTACTTTA
130 CAAAATAATTAAACTTTA
* * *
10595794 AAAAAAAGCCCCTTTTAGCATA-ACATAGCAAAACGGATTAGTTTTGTTCAAGATGAATTTTTTT
1 AAAAAAAGCCCCTTTTAGCATAGA-ATAGCAAAACGGAGTAGTTTTGATCAAAATGAATTTTTTT
*
10595858 GTGGCGCTTTTATGAAAAACACCGCTAAAGGTAAGCAATAGC-G-GCCTTTA-AAAAAAA
65 GCGGCGCTTTTATGAAAAACACCGCTAAAGGTAAGCAATAGCTGCGCCTTTATAAAAAAA
10595915 TGGCCCGGTT
Statistics
Matches: 112, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
144 7 0.06
145 5 0.04
146 2 0.02
147 90 0.80
148 8 0.07
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (147 bp):
AAAAAAAGCCCCTTTTAGCATAGAATAGCAAAACGGAGTAGTTTTGATCAAAATGAATTTTTTTG
CGGCGCTTTTATGAAAAACACCGCTAAAGGTAAGCAATAGCTGCGCCTTTATAAAAAAACGCCAC
AAAATAATTAAACTTTA
Found at i:10597919 original size:18 final size:18
Alignment explanation
Indices: 10597893--10597928 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10597883 TATTTTTCAT
*
10597893 TTGCATCAATTTCTATGC
1 TTGCATCAATTTCCATGC
*
10597911 TTGCTTCAATTTCCATGC
1 TTGCATCAATTTCCATGC
10597929 CTTACAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.25, G:0.11, T:0.44
Consensus pattern (18 bp):
TTGCATCAATTTCCATGC
Found at i:10598300 original size:13 final size:13
Alignment explanation
Indices: 10598282--10598324 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
10598272 TTTTATTTTG
*
10598282 ATTTAAAATTAGA
1 ATTTAAAATTAAA
*
10598295 ATTTAAAAATAAA
1 ATTTAAAATTAAA
* *
10598308 ATTCAAAATTACA
1 ATTTAAAATTAAA
10598321 ATTT
1 ATTT
10598325 TGCATTGAGC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (13 bp):
ATTTAAAATTAAA
Found at i:10599957 original size:43 final size:43
Alignment explanation
Indices: 10599899--10600005 Score: 106
Period size: 43 Copynumber: 2.5 Consensus size: 43
10599889 GGCGTCTGTG
* *
10599899 GAAAAGGCGCTGCTAAAGGTCATGATCTTCAGCGGCAATTGTAA
1 GAAAA-GCGCCGCTAAAGGTCATGACCTTCAGCGGCAATTGTAA
* * * * ** * **
10599943 TAAAAGCGCCGCTAAAGATCCTGACCTTTAGCGGCGTTTTTGG
1 GAAAAGCGCCGCTAAAGGTCATGACCTTCAGCGGCAATTGTAA
10599986 GAAAAGCGCCGCTAAAGGTC
1 GAAAAGCGCCGCTAAAGGTC
10600006 CTTGCCTTTA
Statistics
Matches: 50, Mismatches: 13, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
43 46 0.92
44 4 0.08
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.22
Consensus pattern (43 bp):
GAAAAGCGCCGCTAAAGGTCATGACCTTCAGCGGCAATTGTAA
Found at i:10600166 original size:79 final size:79
Alignment explanation
Indices: 10600035--10600192 Score: 307
Period size: 79 Copynumber: 2.0 Consensus size: 79
10600025 GTTTCTAAAA
*
10600035 ACGCCGCAAATGTTAGCGACGTTGTCAACAGCGGCGTTTTTTGCAGCGCTTGTGAAAGTGCCGCT
1 ACGCCGCAAATGTTAGCGACGTTGTCAACAGCGGCGTTTTTTGCAGCACTTGTGAAAGTGCCGCT
10600100 AAAAGTATTAGCGG
66 AAAAGTATTAGCGG
10600114 ACGCCGCAAATGTTAGCGACGTTGTCAACAGCGGCGTTTTTTGCAGCACTTGTGAAAGTGCCGCT
1 ACGCCGCAAATGTTAGCGACGTTGTCAACAGCGGCGTTTTTTGCAGCACTTGTGAAAGTGCCGCT
10600179 AAAAGTATTAGCGG
66 AAAAGTATTAGCGG
10600193 CGCTAAAAAG
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
ACGCCGCAAATGTTAGCGACGTTGTCAACAGCGGCGTTTTTTGCAGCACTTGTGAAAGTGCCGCT
AAAAGTATTAGCGG
Found at i:10604662 original size:16 final size:15
Alignment explanation
Indices: 10604642--10604684 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
10604632 AAAGAGGGGT
*
10604642 TAAAATATAATAAAA
1 TAAAATACAATAAAA
10604657 TCAAAATACAATAAAA
1 T-AAAATACAATAAAA
*
10604673 TAAAATAGAATA
1 TAAAATACAATA
10604685 TTAGAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 11 0.44
16 14 0.56
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.23
Consensus pattern (15 bp):
TAAAATACAATAAAA
Found at i:10604669 original size:5 final size:5
Alignment explanation
Indices: 10604642--10604684 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
10604632 AAAGAGGGGT
* * *
10604642 TAAAA TATAA TAAAA TCAAAA TACAA TAAAA TAAAA TAGAA TA
1 TAAAA TAAAA TAAAA T-AAAA TAAAA TAAAA TAAAA TAAAA TA
10604685 TTAGAATTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
5 27 0.84
6 5 0.16
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.23
Consensus pattern (5 bp):
TAAAA
Found at i:10606098 original size:19 final size:19
Alignment explanation
Indices: 10606068--10606205 Score: 80
Period size: 19 Copynumber: 7.6 Consensus size: 19
10606058 TTAAATTTTA
10606068 ATTAAAAAA-T-T-AAAAT
1 ATTAAAAAATTATAAAAAT
* *
10606084 ATTAAAAATTTATTAAAA-
1 ATTAAAAAATTATAAAAAT
*
10606102 ATTAGAAAAAATATAAAAAT
1 ATTA-AAAAATTATAAAAAT
*
10606122 AGT-AAAAATTATAAAAAT
1 ATTAAAAAATTATAAAAAT
***
10606140 -TGTAAATTTTTATAAAAAT
1 AT-TAAAAAATTATAAAAAT
*
10606159 AGTAAAAAAATTAT-AAAAT
1 A-TTAAAAAATTATAAAAAT
*
10606178 A-TATAGAAA-TATAAAAA-
1 ATTA-AAAAATTATAAAAAT
*
10606195 ATTATAAAATT
1 ATTAAAAAATT
10606206 TTATAAGTTC
Statistics
Matches: 91, Mismatches: 18, Indels: 24
0.68 0.14 0.18
Matches are distributed among these distances:
16 8 0.09
17 9 0.10
18 31 0.34
19 33 0.36
20 9 0.10
21 1 0.01
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (19 bp):
ATTAAAAAATTATAAAAAT
Found at i:10606176 original size:9 final size:9
Alignment explanation
Indices: 10606067--10606203 Score: 88
Period size: 9 Copynumber: 15.1 Consensus size: 9
10606057 ATTAAATTTT
10606067 AATTA-AAA
1 AATTATAAA
10606075 AATTA-AAA
1 AATTATAAA
*
10606083 TATTA-AAA
1 AATTATAAA
*
10606091 ATTTATTAAA
1 AATTA-TAAA
*
10606101 AATTAGAAA
1 AATTATAAA
*
10606110 AAATATAAA
1 AATTATAAA
10606119 AA-TAGTAAA
1 AATTA-TAAA
10606128 AATTATAAA
1 AATTATAAA
*
10606137 AATTGTAAA
1 AATTATAAA
**
10606146 TTTTTATAAA
1 -AATTATAAA
*
10606156 AATAGTAAAAA
1 AAT--TATAAA
10606167 AATTAT-AA
1 AATTATAAA
*
10606175 AATATATAGA
1 AAT-TATAAA
10606185 AA-TATAAAA
1 AATTAT-AAA
10606194 AATTATAAA
1 AATTATAAA
10606203 A
1 A
10606204 TTTTATAAGT
Statistics
Matches: 101, Mismatches: 17, Indels: 21
0.73 0.12 0.15
Matches are distributed among these distances:
8 28 0.28
9 44 0.44
10 21 0.21
11 8 0.08
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (9 bp):
AATTATAAA
Found at i:10606191 original size:37 final size:33
Alignment explanation
Indices: 10606110--10606194 Score: 82
Period size: 37 Copynumber: 2.3 Consensus size: 33
10606100 AAATTAGAAA
10606110 AAATATAAAAATAGTAAAAATTATAAAAATTGT
1 AAATATAAAAATAGTAAAAATTATAAAAATTGT
10606143 AAATTTTTATAAAAATAGTAAAAAAATTATAAAATATATAG-
1 AAA----TATAAAAATAGT--AAAAATTATAAAA-AT-T-GT
10606184 AAATATAAAAA
1 AAATATAAAAA
10606195 ATTATAAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
33 3 0.07
37 20 0.47
39 13 0.30
40 2 0.05
41 4 0.09
42 1 0.02
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.31
Consensus pattern (33 bp):
AAATATAAAAATAGTAAAAATTATAAAAATTGT
Found at i:10606500 original size:18 final size:18
Alignment explanation
Indices: 10606459--10606525 Score: 55
Period size: 18 Copynumber: 3.5 Consensus size: 18
10606449 TTATAGAAAA
*
10606459 ATTATAATTTTTAATAATTT
1 ATTA-AATTTTTAA-ATTTT
10606479 -TTAAATTTTTAAATTTT
1 ATTAAATTTTTAAATTTT
*
10606496 ATTAAAATTTAATACAATTTT
1 ATT-AAATTT-TTA-AATTTT
*
10606517 ATAAAATTT
1 ATTAAATTT
10606526 ATTTTTTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
17 4 0.10
18 11 0.28
19 9 0.22
20 8 0.20
21 8 0.20
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTAAATTTTTAAATTTT
Found at i:10606505 original size:11 final size:10
Alignment explanation
Indices: 10606464--10606525 Score: 53
Period size: 10 Copynumber: 6.5 Consensus size: 10
10606454 GAAAAATTAT
10606464 AATTTT-TAA
1 AATTTTATAA
10606473 TAATTTT-T-A
1 -AATTTTATAA
10606482 AATTTT-T-A
1 AATTTTATAA
10606490 AATTTTATTAA
1 AATTTTA-TAA
* *
10606501 AATTTAATAC
1 AATTTTATAA
10606511 AATTTTATAA
1 AATTTTATAA
10606521 AATTT
1 AATTT
10606526 ATTTTTTTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
8 14 0.31
9 1 0.02
10 23 0.51
11 7 0.16
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (10 bp):
AATTTTATAA
Found at i:10611686 original size:18 final size:19
Alignment explanation
Indices: 10611663--10611709 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
10611653 ACATTAGTTA
10611663 TTCTTCTTCTAT-TTT-CTT
1 TTCTTCTTCT-TCTTTACTT
10611681 TTCTTCTTCTTCTTTACTT
1 TTCTTCTTCTTCTTTACTT
10611700 TTCTT-TTCTT
1 TTCTTCTTCTT
10611710 TTGTGATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 1 0.04
18 18 0.67
19 8 0.30
ACGTcount: A:0.04, C:0.23, G:0.00, T:0.72
Consensus pattern (19 bp):
TTCTTCTTCTTCTTTACTT
Found at i:10611701 original size:24 final size:24
Alignment explanation
Indices: 10611663--10611709 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
10611653 ACATTAGTTA
10611663 TTCTTCTTCTATTTTCTTTTCTTC
1 TTCTTCTTCTATTTTCTTTTCTTC
10611687 TTCTTCTT-TACTTTTCTTTTCTT
1 TTCTTCTTCTA-TTTTCTTTTCTT
10611710 TTGTGATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 2 0.09
24 20 0.91
ACGTcount: A:0.04, C:0.23, G:0.00, T:0.72
Consensus pattern (24 bp):
TTCTTCTTCTATTTTCTTTTCTTC
Found at i:10612454 original size:64 final size:63
Alignment explanation
Indices: 10612382--10612530 Score: 210
Period size: 64 Copynumber: 2.3 Consensus size: 63
10612372 ACGAGCATGT
*
10612382 GTCCAGGCCGTGTAACTCATTGATTACAAGATAAAGATCACACGGGTTAAGGACAAGAGG-GTGG
1 GTCCAGGCCGTGTAACTCACTGATTACAAGATAAAGATCACACGGG-TAAGGACAA-AGGCGTGG
* * * *
10612446 GTCCAGGCCGTGTAACTCACTGATTACAAGATAAGGATCATACGGGTAGGGACAAAGGCGTGT
1 GTCCAGGCCGTGTAACTCACTGATTACAAGATAAAGATCACACGGGTAAGGACAAAGGCGTGG
* *
10612509 GTCTAGGCCGTGTGACTCACTG
1 GTCCAGGCCGTGTAACTCACTG
10612531 TTGCTATTAG
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
62 3 0.04
63 31 0.40
64 43 0.56
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.21
Consensus pattern (63 bp):
GTCCAGGCCGTGTAACTCACTGATTACAAGATAAAGATCACACGGGTAAGGACAAAGGCGTGG
Found at i:10620668 original size:9 final size:9
Alignment explanation
Indices: 10620654--10620693 Score: 71
Period size: 9 Copynumber: 4.4 Consensus size: 9
10620644 GTTAAACGAA
10620654 TCGAGTTAT
1 TCGAGTTAT
10620663 TCGAGTTAT
1 TCGAGTTAT
*
10620672 TCGAGTTAA
1 TCGAGTTAT
10620681 TCGAGTTAT
1 TCGAGTTAT
10620690 TCGA
1 TCGA
10620694 ATCAACTCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.25, C:0.12, G:0.23, T:0.40
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:10621044 original size:30 final size:31
Alignment explanation
Indices: 10620990--10621049 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
10620980 AAACCTTTTA
* *
10620990 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTCTACTCCCTTCCCAC
* *
10621020 TTTTCCCCTAAAACTTCTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTCTACTCCCTTCCCA
10621050 TCCCACCTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.20, C:0.42, G:0.00, T:0.38
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTCTACTCCCTTCCCAC
Found at i:10634354 original size:12 final size:10
Alignment explanation
Indices: 10634327--10634351 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
10634317 CAACGATTTC
10634327 AAAAATATAA
1 AAAAATATAA
10634337 AAAAATATAA
1 AAAAATATAA
10634347 AAAAA
1 AAAAA
10634352 AATGAACTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAATATAA
Found at i:10635614 original size:49 final size:50
Alignment explanation
Indices: 10635522--10635619 Score: 144
Period size: 49 Copynumber: 2.0 Consensus size: 50
10635512 ATCTATTTAT
* * * * *
10635522 AGGTTGAAAAAACCTTATTCTGATCAATGTCAAATAGATGAAGTGTAGTA
1 AGGTTGAAAAAACCTTATTCTAATCAATGTAAAATAAAAGAAGTATAGTA
10635572 AGGTTG-AAAAACCTTATTCTAATCAATGTAAAATAAAAGAAGTATAGT
1 AGGTTGAAAAAACCTTATTCTAATCAATGTAAAATAAAAGAAGTATAGT
10635620 TCTATATGGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
49 37 0.86
50 6 0.14
ACGTcount: A:0.44, C:0.09, G:0.17, T:0.30
Consensus pattern (50 bp):
AGGTTGAAAAAACCTTATTCTAATCAATGTAAAATAAAAGAAGTATAGTA
Found at i:10638448 original size:10 final size:10
Alignment explanation
Indices: 10638433--10638457 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
10638423 ATAAGTCCTC
10638433 TTTTGCTTAA
1 TTTTGCTTAA
10638443 TTTTGCTTAA
1 TTTTGCTTAA
10638453 TTTTG
1 TTTTG
10638458 TCATATCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.08, G:0.12, T:0.64
Consensus pattern (10 bp):
TTTTGCTTAA
Found at i:10640121 original size:49 final size:50
Alignment explanation
Indices: 10640029--10640126 Score: 144
Period size: 49 Copynumber: 2.0 Consensus size: 50
10640019 ATATATTTAT
* * * * *
10640029 AGGTTGAAAAAACCTTATTCTAATCAATGTTAAATAGATGAAGTGTAGTA
1 AGGTTGAAAAAACATTATTCTAATCAATGTAAAATAAAAGAAGTATAGTA
10640079 AGGTTG-AAAAACATTATTCTAATCAATGTAAAATAAAAGAAGTATAGT
1 AGGTTGAAAAAACATTATTCTAATCAATGTAAAATAAAAGAAGTATAGT
10640127 TTTGTATGGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
49 37 0.86
50 6 0.14
ACGTcount: A:0.46, C:0.07, G:0.16, T:0.31
Consensus pattern (50 bp):
AGGTTGAAAAAACATTATTCTAATCAATGTAAAATAAAAGAAGTATAGTA
Found at i:10642803 original size:38 final size:38
Alignment explanation
Indices: 10642760--10642883 Score: 101
Period size: 38 Copynumber: 3.2 Consensus size: 38
10642750 TTTGATTATA
10642760 TATTTCAAAGTTACTCAATTTTCTCAAATATCTATAGG
1 TATTTCAAAGTTACTCAATTTTCTCAAATATCTATAGG
* * ** * ** ** *
10642798 TATTTCAAATTCTTCACTAAAAATT-GCATCTCGCTTTTA--
1 TATTTCAAA--GTT-ACTCAATTTTCTCAAATATC-TATAGG
10642837 TATTTCAAAGTTACTCAATTTTCTCAAATATCTATAGG
1 TATTTCAAAGTTACTCAATTTTCTCAAATATCTATAGG
10642875 TATTTCAAA
1 TATTTCAAA
10642884 TTCTTCACTA
Statistics
Matches: 59, Mismatches: 20, Indels: 14
0.63 0.22 0.15
Matches are distributed among these distances:
36 10 0.17
37 6 0.10
38 18 0.31
39 9 0.15
40 6 0.10
41 10 0.17
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (38 bp):
TATTTCAAAGTTACTCAATTTTCTCAAATATCTATAGG
Found at i:10642885 original size:77 final size:77
Alignment explanation
Indices: 10642758--10642913 Score: 312
Period size: 77 Copynumber: 2.0 Consensus size: 77
10642748 CATTTGATTA
10642758 TATATTTCAAAGTTACTCAATTTTCTCAAATATCTATAGGTATTTCAAATTCTTCACTAAAAATT
1 TATATTTCAAAGTTACTCAATTTTCTCAAATATCTATAGGTATTTCAAATTCTTCACTAAAAATT
10642823 GCATCTCGCTTT
66 GCATCTCGCTTT
10642835 TATATTTCAAAGTTACTCAATTTTCTCAAATATCTATAGGTATTTCAAATTCTTCACTAAAAATT
1 TATATTTCAAAGTTACTCAATTTTCTCAAATATCTATAGGTATTTCAAATTCTTCACTAAAAATT
10642900 GCATCTCGCTTT
66 GCATCTCGCTTT
10642912 TA
1 TA
10642914 AGTGGAGTTA
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 79 1.00
ACGTcount: A:0.33, C:0.18, G:0.06, T:0.43
Consensus pattern (77 bp):
TATATTTCAAAGTTACTCAATTTTCTCAAATATCTATAGGTATTTCAAATTCTTCACTAAAAATT
GCATCTCGCTTT
Found at i:10644337 original size:49 final size:49
Alignment explanation
Indices: 10644265--10644363 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
10644255 ATTCATAATT
10644265 AACACGCTTAACTAAGTTTCAATCTTTCAGACGACAGGGATAAGCAAAA
1 AACACGCTTAACTAAGTTTCAATCTTTCAGACGACAGGGATAAGCAAAA
10644314 AACACGCTTAACTAAGTTTCAATCTTTCAGACGACAGGGATAAGCAAAA
1 AACACGCTTAACTAAGTTTCAATCTTTCAGACGACAGGGATAAGCAAAA
10644363 A
1 A
10644364 CAGCTATCAG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.22
Consensus pattern (49 bp):
AACACGCTTAACTAAGTTTCAATCTTTCAGACGACAGGGATAAGCAAAA
Found at i:10659099 original size:224 final size:223
Alignment explanation
Indices: 10658703--10659367 Score: 1188
Period size: 222 Copynumber: 3.0 Consensus size: 223
10658693 TAGTTCCTCA
* * ** * *
10658703 AGAAGTTTATAGATGTTAGAGATTAGCAATTTTTTTATTGATTTGGACACAACATTCTCTTGCTT
1 AGAAGTTTATAGATATTAGAGGTTAGCAAAATTTTGATTGATTTGGACACAACATTCTCTTGGTT
*
10658768 ATGATGAAAATCCCTTACAAGCTCAAACAGTTAACTGCCATCATCCATTTTGTTGAAGTACTTCA
66 ATGATGAAAATCCCTTACGAGCTCAAACAGTTAACTGCCATCATCCATTTTGTTGAAGTACTTCA
* * *
10658833 TCAAACTTCTGTTATTAAAGTTGAAGAAGTGCACATACAAAAATCTCAACTGATGATAGGGCAAA
131 TCAAACTTCTGATATGAAAGTTGAAGAAGTGCACATACAAAAATCTCAACTGATGATA-GCCAAA
10658898 ATAAAGTAAAAATATTTCCTTGACATTAG
195 ATAAAGTAAAAATATTTCCTTGACATTAG
10658927 AGAAGTTTATAGATATTAGAGGTTAGCAAAATTTTGATTGATTTGGACACAACATTCTCTTGGTT
1 AGAAGTTTATAGATATTAGAGGTTAGCAAAATTTTGATTGATTTGGACACAACATTCTCTTGGTT
10658992 ATGATGAAAATCCCTTACGAGCTCAAACAGTTAACTGCCATCATCCATTTTGTTGAAGTACTTCA
66 ATGATGAAAATCCCTTACGAGCTCAAACAGTTAACTGCCATCATCCATTTTGTTGAAGTACTTCA
*
10659057 TCAAACTTCTGATATGAAAGTTGAAGAAGTGCACACACAAAAATCTCAACTGATGATAGCCAAAA
131 TCAAACTTCTGATATGAAAGTTGAAGAAGTGCACATACAAAAATCTCAACTGATGATAGCCAAAA
*
10659122 TAAAGTAAAAATATTTCCTTGATATTAG
196 TAAAGTAAAAATATTTCCTTGACATTAG
* *
10659150 AGAAGTTTATAGATATTAGAGGTTAGCAAAA-TTTGATTGGTTTGGACACAACATTTTCTTGGTT
1 AGAAGTTTATAGATATTAGAGGTTAGCAAAATTTTGATTGATTTGGACACAACATTCTCTTGGTT
10659214 ATGATGAAAATCCCTTACGAGCTCAAACAGTTAACTGCCATCATCCATTTTGTTGAAGTACTTCA
66 ATGATGAAAATCCCTTACGAGCTCAAACAGTTAACTGCCATCATCCATTTTGTTGAAGTACTTCA
10659279 TCAAACTTCTGATATGAAAGTTGAAGAAGTGCACATACAAAAATCTCAACTGATGATAGCCAAAA
131 TCAAACTTCTGATATGAAAGTTGAAGAAGTGCACATACAAAAATCTCAACTGATGATAGCCAAAA
10659344 TAAAGTAAAAATATTTCCTTGACA
196 TAAAGTAAAAATATTTCCTTGACA
10659368 ATCAAACATA
Statistics
Matches: 425, Mismatches: 16, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
222 183 0.43
223 64 0.15
224 178 0.42
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (223 bp):
AGAAGTTTATAGATATTAGAGGTTAGCAAAATTTTGATTGATTTGGACACAACATTCTCTTGGTT
ATGATGAAAATCCCTTACGAGCTCAAACAGTTAACTGCCATCATCCATTTTGTTGAAGTACTTCA
TCAAACTTCTGATATGAAAGTTGAAGAAGTGCACATACAAAAATCTCAACTGATGATAGCCAAAA
TAAAGTAAAAATATTTCCTTGACATTAG
Found at i:10670785 original size:25 final size:25
Alignment explanation
Indices: 10670756--10670874 Score: 134
Period size: 25 Copynumber: 4.8 Consensus size: 25
10670746 GTTCTGACCC
10670756 ATAGCTCGTGAGAGCATACCGATCT
1 ATAGCTCGTGAGAGCATACCGATCT
* *
10670781 ATAGCTCGTGTGAGCATACCGATTT
1 ATAGCTCGTGAGAGCATACCGATCT
*
10670806 ATAGCTCGTGAGAGCATATCGATCT
1 ATAGCTCGTGAGAGCATACCGATCT
* * *
10670831 ACAGCTCG-AATGAGCATACTGAT-T
1 ATAGCTCGTGA-GAGCATACCGATCT
* *
10670855 CACAGCTCGTAAGAGCATAC
1 -ATAGCTCGTGAGAGCATAC
10670875 ATGTACATGA
Statistics
Matches: 82, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
24 2 0.02
25 78 0.95
26 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (25 bp):
ATAGCTCGTGAGAGCATACCGATCT
Found at i:10670814 original size:50 final size:50
Alignment explanation
Indices: 10670755--10670874 Score: 168
Period size: 50 Copynumber: 2.4 Consensus size: 50
10670745 TGTTCTGACC
* **
10670755 CATAGCTCGTGAGAGCATACCGATCTATAGCTCGTGTGAGCATACCGATT
1 CATAGCTCGTGAGAGCATACCGATCTACAGCTCGAATGAGCATACCGATT
* * *
10670805 TATAGCTCGTGAGAGCATATCGATCTACAGCTCGAATGAGCATACTGATT
1 CATAGCTCGTGAGAGCATACCGATCTACAGCTCGAATGAGCATACCGATT
* *
10670855 CACAGCTCGTAAGAGCATAC
1 CATAGCTCGTGAGAGCATAC
10670875 ATGTACATGA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 60 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (50 bp):
CATAGCTCGTGAGAGCATACCGATCTACAGCTCGAATGAGCATACCGATT
Found at i:10680994 original size:244 final size:243
Alignment explanation
Indices: 10680557--10681050 Score: 891
Period size: 244 Copynumber: 2.0 Consensus size: 243
10680547 TATTTCTCCT
* *
10680557 TCTAGTATTAGAGATTGTATGGGGTGGTGAGATGTGCTTGGTAACTCTAGATTTGAGATAACTTT
1 TCTAGTGTTAGAGATTGAATGGGGTGGTGAGATGTGCTTGGTAACTCTAGATTTGAGATAACTTT
*
10680622 ACCAGTCTTATCATGTTCTCTATTTTATGAGTTGCATGTATGCATACATTTGCTTTTGAGTGAGA
66 ACCAGTCTTATCATGTTCTCTATTTTATGAGCTGCATGTATGCATACATTTGCTTTTGAGTGAGA
10680687 AAACCTTATGATGTTATTTCTTGTTTTACCTGAGATATACTGCAATGTTCCTATGCAATTAATAC
131 AAACCTTATGATGTTATTTCTTGTTTTACCTGAGATATACTGCAATGTTCCTATGCAATTAAT--
10680752 ACTCATTGCAGATGGATCCACCTTTCTTACATCATCCTGTCTAAGATTGG
194 ACTCATTGCAGATGGATCCACCTTTCTTACATCATCCTGTCTAAGATTGG
10680802 TCTAGTGTTAGAGATTGAATGGGGTGGTGAGATGTGCTTGGTAACTCTAGATTTGAG-TAACTTT
1 TCTAGTGTTAGAGATTGAATGGGGTGGTGAGATGTGCTTGGTAACTCTAGATTTGAGATAACTTT
10680866 ACCAGTCTTATCATGTTCTCTATTTTATGAGCTGCATGTATGCATACATTTGCTTTTGAGTGAGA
66 ACCAGTCTTATCATGTTCTCTATTTTATGAGCTGCATGTATGCATACATTTGCTTTTGAGTGAGA
* * *
10680931 AAGCCTTATGATGTTATTTCTTGTTTTACCTGAGATATACTGCCATGTTCCTTTGCAATTAATAC
131 AAACCTTATGATGTTATTTCTTGTTTTACCTGAGATATACTGCAATGTTCCTATGCAATTAATAC
* *
10680996 TCATTGCAGATTGATCCACCTTTCTTACATCATCCTGTCTAAGATTGT
196 TCATTGCAGATGGATCCACCTTTCTTACATCATCCTGTCTAAGATTGG
10681044 TCTAGTG
1 TCTAGTG
10681051 AAATTTATGC
Statistics
Matches: 241, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
242 55 0.23
244 131 0.54
245 55 0.23
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.40
Consensus pattern (243 bp):
TCTAGTGTTAGAGATTGAATGGGGTGGTGAGATGTGCTTGGTAACTCTAGATTTGAGATAACTTT
ACCAGTCTTATCATGTTCTCTATTTTATGAGCTGCATGTATGCATACATTTGCTTTTGAGTGAGA
AAACCTTATGATGTTATTTCTTGTTTTACCTGAGATATACTGCAATGTTCCTATGCAATTAATAC
TCATTGCAGATGGATCCACCTTTCTTACATCATCCTGTCTAAGATTGG
Found at i:10695093 original size:76 final size:76
Alignment explanation
Indices: 10694987--10695133 Score: 285
Period size: 76 Copynumber: 1.9 Consensus size: 76
10694977 GATTCCCATT
*
10694987 TGCTGAGTCATGTCCTTTACTTTCCTTTAAGTTATGTCTGTAATTAGTATGTTTGTAAAGCAGAT
1 TGCTGAGTCATGTCCTTTACTTTCCTTTAAGTCATGTCTGTAATTAGTATGTTTGTAAAGCAGAT
10695052 TCCTATCTATC
66 TCCTATCTATC
10695063 TGCTGAGTCATGTCCTTTACTTTCCTTTAAGTCATGTCTGTAATTAGTATGTTTGTAAAGCAGAT
1 TGCTGAGTCATGTCCTTTACTTTCCTTTAAGTCATGTCTGTAATTAGTATGTTTGTAAAGCAGAT
10695128 TCCTAT
66 TCCTAT
10695134 TTTGCTATCT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 70 1.00
ACGTcount: A:0.22, C:0.17, G:0.16, T:0.44
Consensus pattern (76 bp):
TGCTGAGTCATGTCCTTTACTTTCCTTTAAGTCATGTCTGTAATTAGTATGTTTGTAAAGCAGAT
TCCTATCTATC
Found at i:10699731 original size:31 final size:31
Alignment explanation
Indices: 10699696--10699763 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
10699686 TTAATAACCT
10699696 AGTGACTTAAATAAAAACTTTTGAATAGCTC
1 AGTGACTTAAATAAAAACTTTTGAATAGCTC
* * *
10699727 AGTGACTTAAATGAGAACTTTTGAATAGTTC
1 AGTGACTTAAATAAAAACTTTTGAATAGCTC
10699758 AGTGAC
1 AGTGAC
10699764 CATTTTGTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (31 bp):
AGTGACTTAAATAAAAACTTTTGAATAGCTC
Found at i:10701398 original size:29 final size:29
Alignment explanation
Indices: 10701365--10701421 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
10701355 CACCTTGACA
* *
10701365 TGAATTCTCAATGAACAAGTTTTTCACCC
1 TGAATTCTCAACGAACAAGTTTTCCACCC
10701394 TGAATTCTCAACGAACAAGTTTTCCACC
1 TGAATTCTCAACGAACAAGTTTTCCACC
10701422 TCTTCCATGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.32
Consensus pattern (29 bp):
TGAATTCTCAACGAACAAGTTTTCCACCC
Found at i:10702499 original size:15 final size:15
Alignment explanation
Indices: 10702479--10702509 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
10702469 ATCAAAGCTG
10702479 TTTCTTTTGAAATCA
1 TTTCTTTTGAAATCA
10702494 TTTCTTTTGAAATCA
1 TTTCTTTTGAAATCA
10702509 T
1 T
10702510 GAGTAGTCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.06, T:0.55
Consensus pattern (15 bp):
TTTCTTTTGAAATCA
Found at i:10706780 original size:7 final size:7
Alignment explanation
Indices: 10706768--10706792 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10706758 TACAAAATTA
10706768 ATTTAAT
1 ATTTAAT
10706775 ATTTAAT
1 ATTTAAT
10706782 ATTTAAT
1 ATTTAAT
10706789 ATTT
1 ATTT
10706793 TTAGGTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
ATTTAAT
Found at i:10707647 original size:11 final size:12
Alignment explanation
Indices: 10707624--10707662 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
10707614 ATTTTTTATT
10707624 AAAATATTACAAA
1 AAAATA-TACAAA
10707637 AAAATAT-CAAA
1 AAAATATACAAA
*
10707648 ATAATATACAAA
1 AAAATATACAAA
10707660 AAA
1 AAA
10707663 GTTTATTTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 10 0.43
12 7 0.30
13 6 0.26
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAATATACAAA
Found at i:10707747 original size:27 final size:27
Alignment explanation
Indices: 10707717--10707782 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 27
10707707 GGTCTGCCAC
10707717 AGGCGGCACCAATGGCG-CTTGTGGCAG
1 AGGCGGCACCAATGGCGTC-TGTGGCAG
* *
10707744 AGGCGACACCAATGGTGTCTGTGGCAG
1 AGGCGGCACCAATGGCGTCTGTGGCAG
10707771 AGGCGGCACCAA
1 AGGCGGCACCAA
10707783 CATGTTCGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.26, G:0.38, T:0.14
Consensus pattern (27 bp):
AGGCGGCACCAATGGCGTCTGTGGCAG
Found at i:10715727 original size:23 final size:23
Alignment explanation
Indices: 10715701--10715776 Score: 116
Period size: 23 Copynumber: 3.3 Consensus size: 23
10715691 ATAAGTGCAA
10715701 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
10715724 CACTGTTATGTAGCCGAAACTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
10715747 CACTGAAACGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
10715770 CACTGAT
1 CACTGAT
10715777 CAATAACACT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:10717169 original size:15 final size:15
Alignment explanation
Indices: 10717149--10717178 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10717139 CTCGAATTCA
*
10717149 ATTTAATAATTAAAT
1 ATTTAAAAATTAAAT
10717164 ATTTAAAAATTAAAT
1 ATTTAAAAATTAAAT
10717179 TAAATTATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
ATTTAAAAATTAAAT
Found at i:10717191 original size:28 final size:28
Alignment explanation
Indices: 10717160--10717215 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
10717150 TTTAATAATT
* *
10717160 AAATATTTAAAAATTAA-ATTAAATTATA
1 AAATATAT-AAAATTAATATTAAAATATA
*
10717188 AAATATATAATATTAATATTAAAATATA
1 AAATATATAAAATTAATATTAAAATATA
10717216 TTTTTATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 7 0.29
28 17 0.71
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (28 bp):
AAATATATAAAATTAATATTAAAATATA
Found at i:10719472 original size:16 final size:16
Alignment explanation
Indices: 10719451--10719483 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
10719441 AATATATATA
10719451 TTAAGTTTTTTATGTT
1 TTAAGTTTTTTATGTT
10719467 TTAAGTTTTTTATGTT
1 TTAAGTTTTTTATGTT
10719483 T
1 T
10719484 AAAAAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.00, G:0.12, T:0.70
Consensus pattern (16 bp):
TTAAGTTTTTTATGTT
Found at i:10719575 original size:20 final size:20
Alignment explanation
Indices: 10719552--10719611 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
10719542 CCCCTGACAG
10719552 TTTAAGTTTTCAATTTTATT
1 TTTAAGTTTTCAATTTTATT
*
10719572 TTTATGTTTTCAATTTTATT
1 TTTAAGTTTTCAATTTTATT
*
10719592 TTT-AGTTTTCAATTTCATT
1 TTTAAGTTTTCAATTTTATT
10719611 T
1 T
10719612 CCCCGACAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
19 15 0.41
20 22 0.59
ACGTcount: A:0.22, C:0.07, G:0.05, T:0.67
Consensus pattern (20 bp):
TTTAAGTTTTCAATTTTATT
Found at i:10719869 original size:16 final size:16
Alignment explanation
Indices: 10719848--10719886 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
10719838 ATTTTGTTAC
*
10719848 AACAATTAATATAATT
1 AACAATTAATACAATT
10719864 AACAATTAATACAATT
1 AACAATTAATACAATT
*
10719880 AATAATT
1 AACAATT
10719887 TGATAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (16 bp):
AACAATTAATACAATT
Found at i:10727476 original size:43 final size:43
Alignment explanation
Indices: 10727410--10727570 Score: 136
Period size: 43 Copynumber: 3.8 Consensus size: 43
10727400 TAAATTCAGT
* *
10727410 GATACGG-GGAATCAACACATAGCAACC-CCTTTCCCAATTAAG
1 GATACGGTGGAATCAGCACATAGCAACCACCTTT-CCAATTAAA
* * *
10727452 GATTCGGTGGAATCAGCACTTAGCAACCACCTTT--ATATTCAAT
1 GATACGGTGGAATCAGCACATAGCAACCACCTTTCCA-ATT-AAA
* * * *
10727495 GATACGG-GGAGTCAGCACTTAGCAACC-CCATTCACAATAAAA
1 GATACGGTGGAATCAGCACATAGCAACCACCTTTC-CAATTAAA
* * *
10727537 AATACAGTGGAATCAGCAAATAGCAACCACCTTT
1 GATACGGTGGAATCAGCACATAGCAACCACCTTT
10727571 ATATTCAGTA
Statistics
Matches: 95, Mismatches: 15, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
41 5 0.05
42 35 0.37
43 45 0.47
44 10 0.11
ACGTcount: A:0.36, C:0.25, G:0.17, T:0.22
Consensus pattern (43 bp):
GATACGGTGGAATCAGCACATAGCAACCACCTTTCCAATTAAA
Found at i:10727513 original size:42 final size:41
Alignment explanation
Indices: 10727380--10727521 Score: 153
Period size: 43 Copynumber: 3.4 Consensus size: 41
10727370 CTTGGTGGAT
* * *
10727380 TCAGCACTTAGCAACCACCATAAATTCAGTGATACGGGGAA
1 TCAGCACTTAGCAACCACCTTTAATTCAATGATACGGGGAA
* * * *
10727421 TCAACACATAGCAACC-CCTTTCCCAATT-AAGGATTCGGTGGAA
1 TCAGCACTTAGCAACCACCTTT---AATTCAATGATACGG-GGAA
*
10727464 TCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAG
1 TCAGCACTTAGCAACCACCTTTA-ATTCAATGATACGGGGAA
10727506 TCAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
10727522 CCATTCACAA
Statistics
Matches: 82, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
40 3 0.04
41 15 0.18
42 29 0.35
43 30 0.37
44 5 0.06
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.23
Consensus pattern (41 bp):
TCAGCACTTAGCAACCACCTTTAATTCAATGATACGGGGAA
Found at i:10727522 original size:85 final size:85
Alignment explanation
Indices: 10727373--10727577 Score: 259
Period size: 85 Copynumber: 2.4 Consensus size: 85
10727363 TCCGTTACTT
* * * *
10727373 GGTGGATTCAGCACTTAGCAACCACC-ATAAATTCAGTGATACGGGGAATCAACACATAGCAACC
1 GGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAATCAACACATAGCAACC
* * * ** *
10727437 CCTTTCCCAATTAAGGATTC
66 CCATTCACAATAAAAAATAC
* * *
10727457 GGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAGTCAGCACTTAGCAACC
1 GGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAATCAACACATAGCAACC
10727522 CCATTCACAATAAAAAATAC
66 CCATTCACAATAAAAAATAC
* **
10727542 AGTGGAATCAGCAAATAGCAACCACCTTTATATTCA
1 GGTGGAATCAGCACTTAGCAACCACCTTTATATTCA
10727578 GTATATTCCG
Statistics
Matches: 104, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
84 25 0.24
85 79 0.76
ACGTcount: A:0.36, C:0.25, G:0.17, T:0.23
Consensus pattern (85 bp):
GGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAATCAACACATAGCAACC
CCATTCACAATAAAAAATAC
Found at i:10734904 original size:43 final size:42
Alignment explanation
Indices: 10734796--10734905 Score: 109
Period size: 43 Copynumber: 2.6 Consensus size: 42
10734786 TATCCGTTAC
* *
10734796 TCGGTGGATTCAGCACTTAGCAACCACCATAAATTCAGTGAT
1 TCGGTGGAATCAGCACTTAGCAACCACCATAAATTAAGTGAT
* * * *
10734838 ACGG-GGAATCAGCACATACCAACC-CCTTTCCAAATTAAG-GAT
1 TCGGTGGAATCAGCACTTAGCAACCACC-AT--AAATTAAGTGAT
*
10734880 TCGGTGGAATCAACACTTAGCAACCA
1 TCGGTGGAATCAGCACTTAGCAACCA
10734906 TCTTTATATT
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
40 2 0.04
41 18 0.34
42 9 0.17
43 24 0.45
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (42 bp):
TCGGTGGAATCAGCACTTAGCAACCACCATAAATTAAGTGAT
Found at i:10734997 original size:86 final size:85
Alignment explanation
Indices: 10734797--10735005 Score: 233
Period size: 86 Copynumber: 2.5 Consensus size: 85
10734787 ATCCGTTACT
* * * *
10734797 CGGTGGATTCAGCACTTAGCAACCACC-ATAAATTCAGTGATACGGGGAATCAGCACATACCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACAGGGAATCAGCACATACCAAC
* * ** *
10734861 CCCTTTCCAAATTAAGGATT
66 CCCATTCCAAATAAAAAATA
* * * * * *
10734881 CGGTGGAATCAACACTTAGCAACCATCTTTATATTCAGTGATACAGGGAGTCAGTACTTAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACAGGGAATCAGCACATACCAAC
10734946 CCCATT-CACAATAAAAAAATA
66 CCCATTCCA-AAT-AAAAAATA
* *
10734967 CTGTGGAATCAGCACATAGCAACCACCTTTATATTCAGT
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGT
10735006 ATATTCCGGC
Statistics
Matches: 103, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
84 26 0.25
85 38 0.37
86 39 0.38
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.24
Consensus pattern (85 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACAGGGAATCAGCACATACCAAC
CCCATTCCAAATAAAAAATA
Found at i:10742059 original size:17 final size:17
Alignment explanation
Indices: 10742037--10742069 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10742027 GTCCAATTTG
*
10742037 TTTCATTTTCTTCCTTT
1 TTTCATCTTCTTCCTTT
10742054 TTTCATCTTCTTCCTT
1 TTTCATCTTCTTCCTT
10742070 GATTGCTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.27, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTCATCTTCTTCCTTT
Found at i:10742826 original size:45 final size:46
Alignment explanation
Indices: 10742764--10742894 Score: 174
Period size: 45 Copynumber: 2.8 Consensus size: 46
10742754 TTATACGCCT
* * *
10742764 AAAATGATTAAGACCATAGCTGAAAGATGCTATGGCTTCATGATA-
1 AAAATGACTAAGACCATAGCTGAAAGACGCTATGGCATCATGATAG
* *
10742809 AAAATGAGTAAGACCATAGCTGAAAGGCGCTATGGCATCATGATAG
1 AAAATGACTAAGACCATAGCTGAAAGACGCTATGGCATCATGATAG
* * *
10742855 AAACAAGACTAAGACCATGGCTGAAAGACGCTATGACATC
1 AAA-ATGACTAAGACCATAGCTGAAAGACGCTATGGCATC
10742895 CTTTGATAGT
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
45 41 0.55
46 3 0.04
47 31 0.41
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.21
Consensus pattern (46 bp):
AAAATGACTAAGACCATAGCTGAAAGACGCTATGGCATCATGATAG
Found at i:10743003 original size:27 final size:27
Alignment explanation
Indices: 10742973--10743056 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 27
10742963 GACATCGTAA
10742973 ATAGTCCGATAGGACATTAAATACGGG
1 ATAGTCCGATAGGACATTAAATACGGG
* * * * *
10743000 ATAGCCCGATAAGACATTAAACATGAG
1 ATAGTCCGATAGGACATTAAATACGGG
** * *
10743027 ATAGTGTGATGGGACATTAAATAGGGG
1 ATAGTCCGATAGGACATTAAATACGGG
10743054 ATA
1 ATA
10743057 ATCTATTGGG
Statistics
Matches: 44, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.39, C:0.12, G:0.26, T:0.23
Consensus pattern (27 bp):
ATAGTCCGATAGGACATTAAATACGGG
Found at i:10744659 original size:172 final size:173
Alignment explanation
Indices: 10744367--10744708 Score: 571
Period size: 172 Copynumber: 2.0 Consensus size: 173
10744357 GACTCGATGG
** *
10744367 ATGTAACATCCTAAACCTGGCCTAGACGGAAAACTAAGTTTAGAATGTTACATTGTCTTACCAAA
1 ATGTAACATCCTAAACCCAGCCTAGACGGAAAACTAAGTTTAGAAAGTTACATTGTCTTACCAAA
10744432 ACCCAGTCATACTTAACCATTGTTAAATTATAAAACAACCAATATCCAAAATATAGTCATGTCAT
66 ACCCAGTCATACTTAACCATTGTTAAATTATAAAACAACCAATATCCAAAATATAGTCATGTCAT
* * *
10744497 ACAAGTTTAAATAATACAAACTAATCATAGGTTCA-ACACTAA
131 ACAAGGTTAAACAATACAAACTAAACATAGGTTCACACACTAA
*
10744539 ATGTAACA-CGCTAAACCCAGCCTAGACGGAAAACTAAGTTTAGAAAGTTACATTGTCTTACCAG
1 ATGTAACATC-CTAAACCCAGCCTAGACGGAAAACTAAGTTTAGAAAGTTACATTGTCTTACCAA
*
10744603 AACCCAGTCATACTTAACCATTGTTAAATTATAAAACAACCAATATCCAGAATATAGTCATGTCA
65 AACCCAGTCATACTTAACCATTGTTAAATTATAAAACAACCAATATCCAAAATATAGTCATGTCA
* *
10744668 TACAAGGTTAGACAATACGAACTAAACATAGGTTCACACAC
130 TACAAGGTTAAACAATACAAACTAAACATAGGTTCACACAC
10744709 ATTTATATAC
Statistics
Matches: 158, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
171 1 0.01
172 153 0.97
173 4 0.03
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (173 bp):
ATGTAACATCCTAAACCCAGCCTAGACGGAAAACTAAGTTTAGAAAGTTACATTGTCTTACCAAA
ACCCAGTCATACTTAACCATTGTTAAATTATAAAACAACCAATATCCAAAATATAGTCATGTCAT
ACAAGGTTAAACAATACAAACTAAACATAGGTTCACACACTAA
Found at i:10747421 original size:23 final size:22
Alignment explanation
Indices: 10747378--10747421 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
10747368 TTCTAAGTCG
10747378 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
10747401 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
10747422 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:10747530 original size:45 final size:45
Alignment explanation
Indices: 10747466--10747559 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
10747456 AACAGATACT
* * *
10747466 CGGTGGATTTAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
*
10747511 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
10747556 CGGT
1 CGGT
10747560 TCACATAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:10747627 original size:51 final size:50
Alignment explanation
Indices: 10747554--10747751 Score: 227
Period size: 51 Copynumber: 3.9 Consensus size: 50
10747544 ATCAATGATG
* * *
10747554 TTCGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCA
1 TTCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCA
* * * * * *
10747605 TTCGATACATGTAGTAGTCTGCACATAGTACTACACACGTGATCGAAACTA
1 TTCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCA
* * * * * *
10747656 TCCGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCA
1 TTCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATACCA
10747705 TTCTGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 TTC-GGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
10747752 CACTTTCACT
Statistics
Matches: 118, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
49 4 0.03
50 38 0.32
51 74 0.63
52 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (50 bp):
TTCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATACCA
Found at i:10747746 original size:101 final size:101
Alignment explanation
Indices: 10747563--10747747 Score: 300
Period size: 101 Copynumber: 1.8 Consensus size: 101
10747553 GTTCGGTTCA
* * *
10747563 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCGATACATGTAGTAGTCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATTCGATACACGTAGTAGCCTGCA
10747628 CATAGTACTACACACGTGATCGAAACTATCCGGTACG
65 CATAGTACTACACACGTGATCGAAACTATCCGGTACG
* *
10747665 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCTGGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATTC-GATACACGTAGTAGCCTGCA
10747729 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
10747748 CCATCACTTT
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
100 7 0.09
101 36 0.47
102 34 0.44
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATTCGATACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACTATCCGGTACG
Found at i:10750136 original size:42 final size:42
Alignment explanation
Indices: 10750086--10750181 Score: 140
Period size: 42 Copynumber: 2.3 Consensus size: 42
10750076 CTATACGAAT
* **
10750086 GGCACTAAGTGTGCGAAACTAAAAT-ATCGATGTTGAATAACG
1 GGCACTAAGTGTGCGAAACAAAAATGA-CGATGTCAAATAACG
10750128 GGCACTAAGTGTGCGAAACAAAAATGACGATGTCAAATAACG
1 GGCACTAAGTGTGCGAAACAAAAATGACGATGTCAAATAACG
*
10750170 GGAACTAAGTGT
1 GGCACTAAGTGT
10750182 ACGATACCAA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 48 0.98
43 1 0.02
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.21
Consensus pattern (42 bp):
GGCACTAAGTGTGCGAAACAAAAATGACGATGTCAAATAACG
Found at i:10763321 original size:63 final size:60
Alignment explanation
Indices: 10763194--10763324 Score: 158
Period size: 60 Copynumber: 2.1 Consensus size: 60
10763184 ATTTAATAAA
* * *
10763194 AATAAAAATAAAAATAAATAATTTAATCATATTTTAATATAATTGTTATTAATATAATTT
1 AATAAAAACAAAAATAAATAATTTAATCATATTTTAATATAATTATTATAAATATAATTT
* *
10763254 AATAAAAACAATAATATATAATTTAATAACAT-TTTTAATATAATTATTATAAAAATATGAA-TT
1 AATAAAAACAAAAATAAATAATTTAAT--CATATTTTAATATAATTATTAT--AAATAT-AATTT
10763317 AATAAAAA
1 AATAAAAA
10763325 TCATAACATA
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
60 24 0.39
61 17 0.28
62 3 0.05
63 15 0.25
64 2 0.03
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (60 bp):
AATAAAAACAAAAATAAATAATTTAATCATATTTTAATATAATTATTATAAATATAATTT
Found at i:10763336 original size:61 final size:57
Alignment explanation
Indices: 10763206--10763324 Score: 134
Period size: 61 Copynumber: 2.0 Consensus size: 57
10763196 TAAAAATAAA
* *
10763206 AATAAATAATTTAATCATATTTTAATATAATTGTTATTAATATAATTTAATAAAAAC
1 AATAAATAATTTAATCATATTTTAATATAATTATTATAAATATAATTTAATAAAAAC
10763263 AATAATATATAATTTAATAACAT-TTTTAATATAATTATTATAAAAATATGAA-TTAATAAAAA
1 AAT-A-A-ATAATTTAAT--CATATTTTAATATAATTATTAT--AAATAT-AATTTAATAAAAA
10763325 TCATAACATA
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
57 3 0.06
58 1 0.02
59 1 0.02
60 10 0.19
61 17 0.33
62 3 0.06
63 15 0.29
64 2 0.04
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.42
Consensus pattern (57 bp):
AATAAATAATTTAATCATATTTTAATATAATTATTATAAATATAATTTAATAAAAAC
Found at i:10771359 original size:34 final size:35
Alignment explanation
Indices: 10771304--10771370 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
10771294 CAAACACCAG
*
10771304 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
10771339 AAAACATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
10771371 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:10793724 original size:41 final size:41
Alignment explanation
Indices: 10793671--10793805 Score: 209
Period size: 41 Copynumber: 3.3 Consensus size: 41
10793661 CGAATCTATG
*
10793671 AAAGGTTGAAAAGAAAGTTATCCGAAAAAGATAACAAATGA
1 AAAGGTTGAAAAGGAAGTTATCCGAAAAAGATAACAAATGA
*
10793712 AAATGTTGAAAAGGAAGTTATCC-AAAAAGGATAACAAATGA
1 AAAGGTTGAAAAGGAAGTTATCCGAAAAA-GATAACAAATGA
* * *
10793753 AAAGGTTGAAAAGGATGTTATTCGAAAAGGATAACAAATGA
1 AAAGGTTGAAAAGGAAGTTATCCGAAAAAGATAACAAATGA
10793794 AAAGGTTGAAAA
1 AAAGGTTGAAAA
10793806 TATATCAATG
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
40 5 0.06
41 77 0.90
42 4 0.05
ACGTcount: A:0.53, C:0.06, G:0.21, T:0.19
Consensus pattern (41 bp):
AAAGGTTGAAAAGGAAGTTATCCGAAAAAGATAACAAATGA
Found at i:10793839 original size:24 final size:24
Alignment explanation
Indices: 10793774--10793870 Score: 115
Period size: 24 Copynumber: 4.0 Consensus size: 24
10793764 AGGATGTTAT
*
10793774 TCGAAAAGGATAACAAATGAAAAGG
1 TCGAAAAGGATATC-AATGAAAAGG
* * *
10793799 TTGAAAA-TATATCAATGAAAAGA
1 TCGAAAAGGATATCAATGAAAAGG
10793822 TCGAAAAGGATATCAATGAAAAGG
1 TCGAAAAGGATATCAATGAAAAGG
* * *
10793846 TTGAAAAGAATAGCAATGAAAAGG
1 TCGAAAAGGATATCAATGAAAAGG
10793870 T
1 T
10793871 TGGTATCTCA
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
23 15 0.25
24 40 0.66
25 6 0.10
ACGTcount: A:0.54, C:0.06, G:0.22, T:0.19
Consensus pattern (24 bp):
TCGAAAAGGATATCAATGAAAAGG
Found at i:10793847 original size:47 final size:49
Alignment explanation
Indices: 10793774--10793868 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 49
10793764 AGGATGTTAT
* *
10793774 TCGAAAAGGATAACAAATGAAAAGGTTGAAAA-TATATCAATGAAAAGA
1 TCGAAAAGGATAACAAATGAAAAGGTTGAAAAGAATAGCAATGAAAAGA
*
10793822 TCGAAAAGGATATC-AATGAAAAGGTTGAAAAGAATAGCAATGAAAAG
1 TCGAAAAGGATAACAAATGAAAAGGTTGAAAAGAATAGCAATGAAAAG
10793869 GTTGGTATCT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
47 17 0.40
48 26 0.60
ACGTcount: A:0.55, C:0.06, G:0.21, T:0.18
Consensus pattern (49 bp):
TCGAAAAGGATAACAAATGAAAAGGTTGAAAAGAATAGCAATGAAAAGA
Found at i:10793871 original size:24 final size:24
Alignment explanation
Indices: 10793789--10793872 Score: 116
Period size: 24 Copynumber: 3.5 Consensus size: 24
10793779 AAGGATAACA
*
10793789 AATGAAAAGGTTGAAAA-TATATC
1 AATGAAAAGGTTGAAAAGAATATC
* * *
10793812 AATGAAAAGATCGAAAAGGATATC
1 AATGAAAAGGTTGAAAAGAATATC
*
10793836 AATGAAAAGGTTGAAAAGAATAGC
1 AATGAAAAGGTTGAAAAGAATATC
10793860 AATGAAAAGGTTG
1 AATGAAAAGGTTG
10793873 GTATCTCATC
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
23 15 0.28
24 38 0.72
ACGTcount: A:0.52, C:0.05, G:0.23, T:0.20
Consensus pattern (24 bp):
AATGAAAAGGTTGAAAAGAATATC
Found at i:10795712 original size:21 final size:21
Alignment explanation
Indices: 10795686--10795730 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
10795676 TGAATGTTAG
10795686 TATTTAATTTGAATATTTGTT
1 TATTTAATTTGAATATTTGTT
10795707 TATTTAATTTGAATATTTGTT
1 TATTTAATTTGAATATTTGTT
10795728 TAT
1 TAT
10795731 GTTTGAAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (21 bp):
TATTTAATTTGAATATTTGTT
Found at i:10800487 original size:30 final size:30
Alignment explanation
Indices: 10800453--10800509 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
10800443 ATAGTAGCAA
* *
10800453 ATACAGATACAAATTTAGACACAGATGTAT
1 ATACAAATACAAATTCAGACACAGATGTAT
*
10800483 ATACAAATACAGATTCAGACACAGATG
1 ATACAAATACAAATTCAGACACAGATG
10800510 CAAAAATAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.47, C:0.16, G:0.14, T:0.23
Consensus pattern (30 bp):
ATACAAATACAAATTCAGACACAGATGTAT
Found at i:10810141 original size:42 final size:43
Alignment explanation
Indices: 10810033--10810146 Score: 103
Period size: 42 Copynumber: 2.7 Consensus size: 43
10810023 AGCTCATTCA
*
10810033 ATGCCAAC-GTCCCAGACATGGTCTTACATGAAATCAAATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACATCAAATCAAATATCG
* **
10810076 ATGCCACTGTTCCC-GACAGGGTCTTACA-CAAACTCCTATA-CG
1 ATGCCACTG-TCCCAGACATGGTCTTACATCAAA-TCAAATATCG
* *
10810118 ATGCTGA-TGTCCCAGACATGGTCTGACAT
1 ATGC-CACTGTCCCAGACATGGTCTTACAT
10810147 GTAATCACAT
Statistics
Matches: 58, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
41 4 0.07
42 25 0.43
43 25 0.43
44 4 0.07
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACATCAAATCAAATATCG
Found at i:10813563 original size:26 final size:25
Alignment explanation
Indices: 10813538--10813594 Score: 53
Period size: 26 Copynumber: 2.3 Consensus size: 25
10813528 TGATAGATAA
**
10813538 AAATAAAATAAAATGTTAATAAATAA
1 AAATAAAATAAAATCATAAT-AATAA
** *
10813564 ATGTAAAATTAAATCATAATAA-AA
1 AAATAAAATAAAATCATAATAATAA
10813588 AAATAAA
1 AAATAAA
10813595 TACATAAAAA
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
24 7 0.29
25 2 0.08
26 15 0.62
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (25 bp):
AAATAAAATAAAATCATAATAATAA
Found at i:10813594 original size:18 final size:18
Alignment explanation
Indices: 10813568--10813605 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
10813558 AAATAAATGT
*
10813568 AAAATTAAAT-CATAATAA
1 AAAAATAAATACATAA-AA
10813586 AAAAATAAATACATAAAA
1 AAAAATAAATACATAAAA
10813604 AA
1 AA
10813606 TTAAAACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (18 bp):
AAAAATAAATACATAAAA
Found at i:10816544 original size:29 final size:30
Alignment explanation
Indices: 10816510--10816566 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
10816500 GGAATGCAAT
*
10816510 ATTGGGCTAAA-TAGAAGAAA-AAGGAAACA
1 ATTGGGCCAAATTA-AAGAAAGAAGGAAACA
10816539 ATTGGGCCAAATTAAAGAAAGAAGGAAA
1 ATTGGGCCAAATTAAAGAAAGAAGGAAA
10816567 GAAGGATAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 16 0.64
30 9 0.36
ACGTcount: A:0.54, C:0.07, G:0.25, T:0.14
Consensus pattern (30 bp):
ATTGGGCCAAATTAAAGAAAGAAGGAAACA
Found at i:10820070 original size:3 final size:3
Alignment explanation
Indices: 10820062--10820092 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
10820052 TTAGTTTTCC
10820062 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
10820093 TATACTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:10822596 original size:15 final size:15
Alignment explanation
Indices: 10822576--10822608 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
10822566 AAAAGGAAAC
10822576 AAAAATGAAAAAGAA
1 AAAAATGAAAAAGAA
10822591 AAAAATGAAAAAGAA
1 AAAAATGAAAAAGAA
10822606 AAA
1 AAA
10822609 GGAGAGGCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (15 bp):
AAAAATGAAAAAGAA
Found at i:10823977 original size:50 final size:49
Alignment explanation
Indices: 10823909--10824270 Score: 176
Period size: 50 Copynumber: 7.3 Consensus size: 49
10823899 GCAATTAAAG
* * * *
10823909 AGATTGAAGCCACAACGGCAAATCTCACTTCTCTGGTAGTGCAGTGGAGC
1 AGATTAAAGCTACAACGGCGAATCTTACTT-TCTGGTAGTGCAGTGGAGC
* * * * * ** **
10823959 AGATTAAAGCTACGACGGCGAATCTTGCTTTCCTGATATTGCAATTAAAA
1 AGATTAAAGCTACAACGGCGAATCTTACTTT-CTGGTAGTGCAGTGGAGC
** * *
10824009 AGATTGAAA-CCGCAACGGCGAATCTTACTTTCCTGG-CGATGCAGTGGATC
1 AGATT-AAAGCTACAACGGCGAATCTTACTTT-CTGGTAG-TGCAGTGGAGC
* * * * ** * * **
10824059 AGATTGAAGCTACAACGGCGAATCTT-GTTCCCCGACATTGCAATTAAAG-
1 AGATTAAAGCTACAACGGCGAATCTTACTT-TCTGGTAGTGC-AGTGGAGC
* * * * * *
10824108 AGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGCAATACAGTGGAGC
1 AGATTAAAGCTACAACGGCGAATCTTACTT-TCTGGTAGTGCAGTGGAGC
* * * * * * ** **
10824158 AGATTAAAGCTACGATGGCGAATCTTGCTTTCCTGATATTGCAATTAAAA
1 AGATTAAAGCTACAACGGCGAATCTTACTTT-CTGGTAGTGCAGTGGAGC
* * *
10824208 AGATTGAAGCTGCAACGGCAAATCTTACTTGTCTGGT-GATGCAGTGGAGC
1 AGATTAAAGCTACAACGGCGAATCTTACTT-TCTGGTAG-TGCAGTGGAGC
10824258 AGATTAAAGCTAC
1 AGATTAAAGCTAC
10824271 GACGACAAAT
Statistics
Matches: 221, Mismatches: 79, Indels: 24
0.68 0.24 0.07
Matches are distributed among these distances:
49 39 0.18
50 178 0.81
51 4 0.02
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (49 bp):
AGATTAAAGCTACAACGGCGAATCTTACTTTCTGGTAGTGCAGTGGAGC
Found at i:10824052 original size:100 final size:98
Alignment explanation
Indices: 10823841--10824437 Score: 678
Period size: 100 Copynumber: 6.0 Consensus size: 98
10823831 AGTTACCTTC
* * * *
10823841 CCTGGC-AGTGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGTTCTCCAACATTGCAATT
1 CCTGGCGA-TGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATT
* *
10823905 AAAGAGATTGAAGCCACAACGGCAAATCTCACTT
65 AAAAAGATTGAAGCCACAACGGCGAATCTCACTT
* * * * *
10823939 CTCTGG-TAGTGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTTCCTGATATTGCAA
1 C-CTGGCGA-TGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTG-TTCCCCGACATTGCAA
* * *
10824003 TTAAAAAGATTGAAACCGCAACGGCGAATCTTACTTT
63 TTAAAAAGATTGAAGCCACAACGGCGAATCTCAC-TT
* *
10824040 CCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTA
1 CCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTA
*
10824105 AAGAGATTGAAGCCACAACGGCGAATCTCACTT
66 AAAAGATTGAAGCCACAACGGCGAATCTCACTT
* * * * * * *
10824138 CTCTGGCAATACAGTGGAGCAGATTAAAGCTACGATGGCGAATCTTGCTTTCCTGATATTGCAAT
1 C-CTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTG-TTCCCCGACATTGCAAT
** * *
10824203 TAAAAAGATTGAAGCTGCAACGGCAAATCTTACTT
64 TAAAAAGATTGAAGCCACAACGGCGAATCTCACTT
* * * * *
10824238 GTCTGGTGATGCAGTGGAGCAGATTAAAGCTACGACGACAAATCTTGCTTCCCCGACATTGCAAT
1 -CCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTG-TTCCCCGACATTGCAAT
* * * * *
10824303 TTAAAATATTGAAGCCGCAACGGTGAATCTTACTT
64 TAAAAAGATTGAAGCCACAACGGCGAATCTCACTT
* * * *
10824338 CCTTGGTGGTGCAGTGG-GACTGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAAT
1 CC-TGGCGATGCAGTGGAG-CAGATTAAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAAT
* *
10824402 TAAAGAGATTGAAGCCACAACGGTGAATCTCACTT
64 TAAAAAGATTGAAGCCACAACGGCGAATCTCACTT
10824437 C
1 C
10824438 TCCCTAAGCA
Statistics
Matches: 424, Mismatches: 65, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
98 4 0.01
99 173 0.41
100 243 0.57
101 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.26
Consensus pattern (98 bp):
CCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTA
AAAAGATTGAAGCCACAACGGCGAATCTCACTT
Found at i:10824189 original size:199 final size:200
Alignment explanation
Indices: 10823841--10824436 Score: 819
Period size: 199 Copynumber: 3.0 Consensus size: 200
10823831 AGTTACCTTC
* *
10823841 CCTGGC-AGTGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGTTCTCCAACATTGCAATT
1 CCTGGCGA-TGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATT
*
10823905 AAAGAGATTGAAGCCACAACGGCAAATCTCACTTCTCTGGTAGTGCAGTGGAGCAGATTAAAGCT
65 AAAGAGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGTAGTGCAGTGGAGCAGATTAAAGCT
*
10823970 ACGACGGCGAATCTTGCTTTCCTGATATTGCAATTAAAAAGATTGAAACCGCAACGGCGAATCTT
130 ACGACGGCGAATCTTGCTTTCCTGATATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTT
10824035 ACTT-T
195 ACTTGT
10824040 CCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTA
1 CCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTA
* * *
10824105 AAGAGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGCAATACAGTGGAGCAGATTAAAGCTA
66 AAGAGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGTAGTGCAGTGGAGCAGATTAAAGCTA
* * *
10824170 CGATGGCGAATCTTGCTTTCCTGATATTGCAATTAAAAAGATTGAAGCTGCAACGGCAAATCTTA
131 CGACGGCGAATCTTGCTTTCCTGATATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTA
10824235 CTTGT
196 CTTGT
* * * * * *
10824240 -CTGGTGATGCAGTGGAGCAGATTAAAGCTACGACGACAAATCTTGCTTCCCCGACATTGCAATT
1 CCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTG-TTCCCCGACATTGCAA-T
* * * * * * *
10824304 TAAA-ATATTGAAGCCGCAACGGTGAATCTTACTTC-CTTGGTGGTGCAGTGG-GACTGATTGAA
64 TAAAGAGATTGAAGCCACAACGGCGAATCTCACTTCTC-TGGTAGTGCAGTGGAG-CAGATTAAA
* * * * * * *
10824366 GCTACAACGGCGAATCTTG-TTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGTGAAT
127 GCTACGACGGCGAATCTTGCTTTCCTGATATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAAT
*
10824430 CTCACTT
192 CTTACTT
10824437 CTCCCTAAGC
Statistics
Matches: 354, Mismatches: 37, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
199 270 0.76
200 79 0.22
201 5 0.01
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.26
Consensus pattern (200 bp):
CCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTA
AAGAGATTGAAGCCACAACGGCGAATCTCACTTCTCTGGTAGTGCAGTGGAGCAGATTAAAGCTA
CGACGGCGAATCTTGCTTTCCTGATATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTA
CTTGT
Found at i:10824434 original size:299 final size:298
Alignment explanation
Indices: 10823837--10824439 Score: 890
Period size: 299 Copynumber: 2.0 Consensus size: 298
10823827 ACGAAGTTAC
* * * * *
10823837 CTTCCCTGGCAGTGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGTTCTCCAACATTGCA
1 CTTCTCTGGCAATACAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGTTCTCCAACATTGCA
*
10823902 ATTAAAGAGATTGAAGCCACAACGGCAAATCTCACTTCTCTGGTAGTGCAGTGGAGCAGATTAAA
66 ATTAAAAAGATTGAAGCCACAACGGCAAATCTCACTTCTCTGGTAGTGCAGTGGAGCAGATTAAA
* * * * *
10823967 GCTACGACGGCGAATCTTGCTTTCCTGATATTGCAATTAAAAAGATTGAAACCGCAACGGCGAAT
131 GCTACGACGACAAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAACCGCAACGGCGAAT
10824032 CTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACAT
196 CTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACAT
10824097 TGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCA
261 TGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCA
* * * *
10824135 CTTCTCTGGCAATACAGTGGAGCAGATTAAAGCTACGATGGCGAATCTTGCTT-TCCTGATATTG
1 CTTCTCTGGCAATACAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTG-TTCTCC-AACATTG
** * *
10824199 CAATTAAAAAGATTGAAGCTGCAACGGCAAATCTTACTTGTCTGGT-GATGCAGTGGAGCAGATT
64 CAATTAAAAAGATTGAAGCCACAACGGCAAATCTCACTTCTCTGGTAG-TGCAGTGGAGCAGATT
* * * *
10824263 AAAGCTACGACGACAAATCTTGCTTCCCCGACATTGCAATTTAAAATATTGAAGCCGCAACGGTG
128 AAAGCTACGACGACAAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAACCGCAACGGCG
* * *
10824328 AATCTTAC-TTCCTTGGTGGTGCAGTGGGA-CTGATTGAAGCTACAACGGCGAATCTTGTTCCCC
193 AATCTTACTTTCC-TGGCGATGCAGT-GGATCAGATTGAAGCTACAACGGCGAATCTTGTTCCCC
*
10824391 GACATTGCAATTAAAGAGATTGAAGCCACAACGGTGAATCTCA
256 GACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCA
10824434 CTTCTC
1 CTTCTC
10824440 CCTAAGCAGT
Statistics
Matches: 273, Mismatches: 27, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
298 51 0.19
299 219 0.80
300 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (298 bp):
CTTCTCTGGCAATACAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGTTCTCCAACATTGCA
ATTAAAAAGATTGAAGCCACAACGGCAAATCTCACTTCTCTGGTAGTGCAGTGGAGCAGATTAAA
GCTACGACGACAAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAACCGCAACGGCGAAT
CTTACTTTCCTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGCGAATCTTGTTCCCCGACAT
TGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCA
Found at i:10826994 original size:15 final size:16
Alignment explanation
Indices: 10826963--10826995 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
10826953 ATATCCTTTT
*
10826963 AAATTTCAAACACATA
1 AAATTTCAAACAAATA
10826979 AAATTTCAAA-AAATA
1 AAATTTCAAACAAATA
10826994 AA
1 AA
10826996 GGCAATATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (16 bp):
AAATTTCAAACAAATA
Found at i:10830055 original size:26 final size:26
Alignment explanation
Indices: 10829982--10830080 Score: 103
Period size: 26 Copynumber: 3.9 Consensus size: 26
10829972 TGGCTATCCG
*
10829982 GAGC-TCCTGATTAATGGCTCTTCGT
1 GAGCTTCCTGATTAAAGGCTCTTCGT
* *
10830007 GAGCTTCATGTTTAAAGGCTCTTCGT
1 GAGCTTCCTGATTAAAGGCTCTTCGT
* * *
10830033 GAGCTTCCTGATTAAAAGTTCTTTGT
1 GAGCTTCCTGATTAAAGGCTCTTCGT
** *
10830059 GAAATTCCTGATT-ATGGCTCTT
1 GAGCTTCCTGATTAAAGGCTCTT
10830081 ATGTGCTTCC
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
25 10 0.17
26 50 0.83
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.39
Consensus pattern (26 bp):
GAGCTTCCTGATTAAAGGCTCTTCGT
Found at i:10830136 original size:23 final size:26
Alignment explanation
Indices: 10830110--10830176 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
10830100 ACCCGAATAG
10830110 GCTTCCTGA-T-A-GGCTCTTTGTGA
1 GCTTCCTGATTAATGGCTCTTTGTGA
* *
10830133 GCTTCCCGATTAATGGCTTTTTGTGA
1 GCTTCCTGATTAATGGCTCTTTGTGA
10830159 GCTTCCT-ATTATATGGCT
1 GCTTCCTGATTA-ATGGCT
10830177 TGAGAGAGGA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
23 8 0.22
24 1 0.03
25 5 0.14
26 23 0.62
ACGTcount: A:0.15, C:0.21, G:0.22, T:0.42
Consensus pattern (26 bp):
GCTTCCTGATTAATGGCTCTTTGTGA
Found at i:10830155 original size:26 final size:26
Alignment explanation
Indices: 10830121--10830177 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
10830111 CTTCCTGATA
*
10830121 GGCTCTTTGTGAGCTTCCCGATTA-AT
1 GGCTTTTTGTGAGCTT-CCGATTATAT
*
10830147 GGCTTTTTGTGAGCTTCCTATTATAT
1 GGCTTTTTGTGAGCTTCCGATTATAT
10830173 GGCTT
1 GGCTT
10830178 GAGAGAGGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 6 0.21
26 22 0.79
ACGTcount: A:0.14, C:0.19, G:0.23, T:0.44
Consensus pattern (26 bp):
GGCTTTTTGTGAGCTTCCGATTATAT
Found at i:10832985 original size:20 final size:19
Alignment explanation
Indices: 10832958--10833007 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
10832948 AAAAAAAAAA
10832958 TCAAAATAATTTTCAAGATT
1 TCAAAATAATTTTCAA-ATT
* *
10832978 TTAAAATAATTTTTAAATT
1 TCAAAATAATTTTCAAATT
10832997 TCAAAA-AATTT
1 TCAAAATAATTT
10833008 ATAAAATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 5 0.19
19 8 0.30
20 14 0.52
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (19 bp):
TCAAAATAATTTTCAAATT
Found at i:10838725 original size:5 final size:5
Alignment explanation
Indices: 10838715--10838742 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
10838705 CTAAAATTAT
10838715 ATTTA ATTTA ATTTA ATTTA ATTTA ATT
1 ATTTA ATTTA ATTTA ATTTA ATTTA ATT
10838743 ATATATTAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
ATTTA
Found at i:10838727 original size:15 final size:15
Alignment explanation
Indices: 10838709--10838751 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 15
10838699 AATATTCTAA
10838709 AATTATATTTAATTT
1 AATTATATTTAATTT
10838724 AATT-TAATTTAATTT
1 AATTAT-ATTTAATTT
10838739 AATTATATATTAA
1 AATTATAT-TTAA
10838752 CTTTGAGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 1 0.04
15 19 0.76
16 5 0.20
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
AATTATATTTAATTT
Found at i:10850430 original size:43 final size:43
Alignment explanation
Indices: 10850365--10850455 Score: 157
Period size: 43 Copynumber: 2.1 Consensus size: 43
10850355 ATGACATATC
10850365 TGGA-GTGATTGCAAGCACCTATCATGATAAGGAAACCAACAT
1 TGGATGTGATTGCAAGCACCTATCATGATAAGGAAACCAACAT
* *
10850407 TGGATGTGATTGGAAGCACCTATCATGATAATGAAACCAACAT
1 TGGATGTGATTGCAAGCACCTATCATGATAAGGAAACCAACAT
10850450 TGGATG
1 TGGATG
10850456 GTCCAAAGAG
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
42 4 0.09
43 42 0.91
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.24
Consensus pattern (43 bp):
TGGATGTGATTGCAAGCACCTATCATGATAAGGAAACCAACAT
Found at i:10851428 original size:16 final size:16
Alignment explanation
Indices: 10851407--10851438 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
10851397 TAAAAATATT
*
10851407 TTTAAAAAATTTAAAA
1 TTTAAAAAATATAAAA
10851423 TTTAAAAAATATAAAA
1 TTTAAAAAATATAAAA
10851439 AAATATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
TTTAAAAAATATAAAA
Found at i:10857054 original size:16 final size:16
Alignment explanation
Indices: 10857028--10857065 Score: 67
Period size: 16 Copynumber: 2.3 Consensus size: 16
10857018 TCCTTCCACT
10857028 ATTTCTCTTGATATGAA
1 ATTT-TCTTGATATGAA
10857045 ATTTTCTTGATATGAA
1 ATTTTCTTGATATGAA
10857061 ATTTT
1 ATTTT
10857066 AACAACATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.29, C:0.08, G:0.11, T:0.53
Consensus pattern (16 bp):
ATTTTCTTGATATGAA
Found at i:10861381 original size:37 final size:37
Alignment explanation
Indices: 10861302--10861417 Score: 178
Period size: 37 Copynumber: 3.1 Consensus size: 37
10861292 CTATTGATCC
*
10861302 TACTAAATGAAGCTCAATCGAGTCAAATCTTACTATTG
1 TACTAAATGAAGCTCAATCGAG-CAAATCTTACTATTA
*
10861340 TACTAAATGAAGCTCAATCGAGCAAATCTTACCATTA
1 TACTAAATGAAGCTCAATCGAGCAAATCTTACTATTA
* * *
10861377 TACTAAATGAAGCTCAATAGGGAAAATCTTACTATTA
1 TACTAAATGAAGCTCAATCGAGCAAATCTTACTATTA
10861414 TACT
1 TACT
10861418 GAGTGAAACT
Statistics
Matches: 72, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
37 50 0.69
38 22 0.31
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.30
Consensus pattern (37 bp):
TACTAAATGAAGCTCAATCGAGCAAATCTTACTATTA
Found at i:10866733 original size:24 final size:24
Alignment explanation
Indices: 10866705--10866771 Score: 78
Period size: 24 Copynumber: 3.1 Consensus size: 24
10866695 TATGTTAGAT
10866705 TTAAAAAGTGAACTGGTCCTTCTA
1 TTAAAAAGTGAACTGGTCCTTCTA
10866729 TT-AAAA---AA----TCCTTCTA
1 TTAAAAAGTGAACTGGTCCTTCTA
10866745 TTAAAAAGTGAACTGGTCCTTCTA
1 TTAAAAAGTGAACTGGTCCTTCTA
10866769 TTA
1 TTA
10866772 CAATTTAGTC
Statistics
Matches: 35, Mismatches: 0, Indels: 16
0.69 0.00 0.31
Matches are distributed among these distances:
16 10 0.29
17 4 0.11
20 4 0.11
23 4 0.11
24 13 0.37
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (24 bp):
TTAAAAAGTGAACTGGTCCTTCTA
Found at i:10866742 original size:16 final size:16
Alignment explanation
Indices: 10866721--10866751 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
10866711 AGTGAACTGG
10866721 TCCTTCTATTAAAAAA
1 TCCTTCTATTAAAAAA
10866737 TCCTTCTATTAAAAA
1 TCCTTCTATTAAAAA
10866752 GTGAACTGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39
Consensus pattern (16 bp):
TCCTTCTATTAAAAAA
Found at i:10874495 original size:19 final size:19
Alignment explanation
Indices: 10874471--10874508 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
10874461 ATGCTCAAAA
10874471 GATAGTTTTCATTTACCCT
1 GATAGTTTTCATTTACCCT
10874490 GATAGTTTTCATTTACCCT
1 GATAGTTTTCATTTACCCT
10874509 TAATTGATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.47
Consensus pattern (19 bp):
GATAGTTTTCATTTACCCT
Found at i:10874956 original size:27 final size:28
Alignment explanation
Indices: 10874904--10874957 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
10874894 TTTGCCAATG
**
10874904 TTTAGTGAATTGAGGGTTCATTAGTTGC
1 TTTAGTGAATTGAGGGTTCACCAGTTGC
*
10874932 TTTAGTGAATT-AGGGTTCGCCAGTTG
1 TTTAGTGAATTGAGGGTTCACCAGTTG
10874958 GTTGGTGAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 12 0.52
28 11 0.48
ACGTcount: A:0.20, C:0.09, G:0.30, T:0.41
Consensus pattern (28 bp):
TTTAGTGAATTGAGGGTTCACCAGTTGC
Found at i:10878615 original size:134 final size:134
Alignment explanation
Indices: 10878430--10879026 Score: 633
Period size: 134 Copynumber: 4.5 Consensus size: 134
10878420 GAAATATATT
* * *
10878430 AAACAGTTTGTTGATTTGCGATCACGACTGATATTATTAAGGCTCGTTGATTTATGATTACAACC
1 AAACAGTTTGCTGATTTACGATCACGACTGATATTATTAAGGCTCGTTGATTTATGATCACAACC
* * * *
10878495 TAAGTGT-ATTGATTTACGATCATAAACAA-TTTTATCTGAGTTAGTTGATTTACAATCACAACT
66 TAAGT-TCATTGATTTACAATCATGAACAAGTTCT-TCTGAGTTAGTTGATTTACAATCGCAACT
10878558 CCATTC
129 CCATTC
* * * *
10878564 AAACAGTTCGCTGATTTATGATCACAACTAATATTATTAAGGCTCGTTGATTTATGATCACAACC
1 AAACAGTTTGCTGATTTACGATCACGACTGATATTATTAAGGCTCGTTGATTTATGATCACAACC
* * * * * **
10878629 TAAGTTCATTTATTTATAATTATGAACAAGTTCTTCTGAATTAATTGATTTATGATCGCAACTCC
66 TAAGTTCATTGATTTACAATCATGAACAAGTTCTTCTGAGTTAGTTGATTTACAATCGCAACTCC
10878694 ATTC
131 ATTC
* * * * * * * * * *
10878698 CAATAGTTTGTTGATTTACGATTACGACTGATATTGTTAAAGCTCGCTAATTTATGGTCACAGCC
1 AAACAGTTTGCTGATTTACGATCACGACTGATATTATTAAGGCTCGTTGATTTATGATCACAACC
*** * * * * * *
10878763 TAAGTTCATTGATTTTTGACCATGAACAAGTTCTTTTAAGTTAGTTGATTTACGATCGGAACTTC
66 TAAGTTCATTGATTTACAATCATGAACAAGTTCTTCTGAGTTAGTTGATTTACAATCGCAACTCC
*
10878828 ATTT
131 ATTC
* * * * ** **
10878832 AAACAGTTTGCTAATTTATGATCATGACTAATATTATTAAGGCTTATTGATTTACAATCACAACC
1 AAACAGTTTGCTGATTTACGATCACGACTGATATTATTAAGGCTCGTTGATTTATGATCACAACC
* * *
10878897 TAAGTTCATTGATTAACAATCATGAACAAGTTCTTCTGAGTAAGCTT-ATTTACAATCTCAACTC
66 TAAGTTCATTGATTTACAATCATGAACAAGTTCTTCTGAGTTAG-TTGATTTACAATCGCAACTC
**
10878961 TGTTC
130 CATTC
** * ** *
10878966 AAACAGTTCACTAATTTACGATCACGACTGATGCTATTAAGGCTCGTTGATTTACGATCAC
1 AAACAGTTTGCTGATTTACGATCACGACTGATATTATTAAGGCTCGTTGATTTATGATCAC
10879027 GACTAATATT
Statistics
Matches: 372, Mismatches: 88, Indels: 6
0.80 0.19 0.01
Matches are distributed among these distances:
133 1 0.00
134 366 0.98
135 5 0.01
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (134 bp):
AAACAGTTTGCTGATTTACGATCACGACTGATATTATTAAGGCTCGTTGATTTATGATCACAACC
TAAGTTCATTGATTTACAATCATGAACAAGTTCTTCTGAGTTAGTTGATTTACAATCGCAACTCC
ATTC
Found at i:10879026 original size:36 final size:36
Alignment explanation
Indices: 10878979--10879062 Score: 132
Period size: 36 Copynumber: 2.3 Consensus size: 36
10878969 CAGTTCACTA
* * *
10878979 ATTTACGATCACGACTGATGCTATTAAGGCTCGTTG
1 ATTTACGATCACGACTAATACTATTAAGGCTAGTTG
*
10879015 ATTTACGATCACGACTAATATTATTAAGGCTAGTTG
1 ATTTACGATCACGACTAATACTATTAAGGCTAGTTG
10879051 ATTTACGATCAC
1 ATTTACGATCAC
10879063 AACCTAAGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.35
Consensus pattern (36 bp):
ATTTACGATCACGACTAATACTATTAAGGCTAGTTG
Found at i:10885126 original size:161 final size:161
Alignment explanation
Indices: 10884855--10885325 Score: 924
Period size: 161 Copynumber: 2.9 Consensus size: 161
10884845 TAGGATGCTT
*
10884855 GGGAAGATACCAAAATATCATCAATGAATACCACCACAAATCTATCTAGATACATTCTGAAAATT
1 GGGAATATACCAAAATATCATCAATGAATACCACCACAAATCTATCTAGATACATTCTGAAAATT
10884920 CTATTCATTAAATCCATGAACATTGCAGGTGCAATTGTCAAGCCAAACGACATTACAAGAAATTC
66 CTATTCATTAAATCCATGAACATTGCAGGTGCAATTGTCAAGCCAAACGACATTACAAGAAATTC
10884985 ATAATGTCCGTACCTAGTTTATTTTCATCTC
131 ATAATGTCCGTACCTAGTTTATTTTCATCTC
10885016 GGGAATATACCAAAATATCATCAATGAATACCACCACAAATCTATCTAGATACATTCTGAAAATT
1 GGGAATATACCAAAATATCATCAATGAATACCACCACAAATCTATCTAGATACATTCTGAAAATT
10885081 CTATTCATTAAATCCATGAACATTGCAGGTGCAATTGTCAAGCCAAACGACATTACAAGAAATTC
66 CTATTCATTAAATCCATGAACATTGCAGGTGCAATTGTCAAGCCAAACGACATTACAAGAAATTC
10885146 ATAATGTCCGTACCTAGTTTATTTTCATCTC
131 ATAATGTCCGTACCTAGTTTATTTTCATCTC
*
10885177 GGGAATATACCAAAATATCATCAATGAATACCACCACAAATCTATCTAGATACAGTCTGAAAATT
1 GGGAATATACCAAAATATCATCAATGAATACCACCACAAATCTATCTAGATACATTCTGAAAATT
10885242 CTATTCATTAAATCCATGAACATTGCAGGTGCAATTGTCAAGCCAAACGACATTACAAGAAATTC
66 CTATTCATTAAATCCATGAACATTGCAGGTGCAATTGTCAAGCCAAACGACATTACAAGAAATTC
10885307 ATAATGTCCGTACCTAGTT
131 ATAATGTCCGTACCTAGTT
10885326 CTGAAAGTTG
Statistics
Matches: 308, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
161 308 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (161 bp):
GGGAATATACCAAAATATCATCAATGAATACCACCACAAATCTATCTAGATACATTCTGAAAATT
CTATTCATTAAATCCATGAACATTGCAGGTGCAATTGTCAAGCCAAACGACATTACAAGAAATTC
ATAATGTCCGTACCTAGTTTATTTTCATCTC
Found at i:10893016 original size:32 final size:32
Alignment explanation
Indices: 10892970--10893036 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
10892960 CCCTTTTAAG
* * *
10892970 ATCAAGTCTAAACAATCTTTTAAGCAAATTGC
1 ATCAAGTCTAAACAACCCTTGAAGCAAATTGC
* *
10893002 ATCAAGTCTCAACAACCCTTGAAGCAGATTGC
1 ATCAAGTCTAAACAACCCTTGAAGCAAATTGC
10893034 ATC
1 ATC
10893037 TGTTGAAACC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (32 bp):
ATCAAGTCTAAACAACCCTTGAAGCAAATTGC
Found at i:10894321 original size:26 final size:26
Alignment explanation
Indices: 10894268--10894321 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
10894258 ATATATATAA
* *
10894268 ATTATAAAATATATATACATCTATGT
1 ATTATAAAATATATATACATATACGT
*
10894294 ATTATAAAATGTATATA-AGTATACGT
1 ATTATAAAATATATATACA-TATACGT
10894320 AT
1 AT
10894322 ATTTTAAGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (26 bp):
ATTATAAAATATATATACATATACGT
Found at i:10895961 original size:133 final size:133
Alignment explanation
Indices: 10895713--10896126 Score: 690
Period size: 133 Copynumber: 3.1 Consensus size: 133
10895703 GCAACTTCAG
10895713 GGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCT-
1 GGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTC
* * * *
10895777 TTGATCTGCTCCACTAATGCTTAGGGAGACAGGATCTATAATATTCAACCTACTCCACTACTGCT
66 TTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCTGCT
10895842 CAA
131 CAA
*
10895845 GGAGATAGGACTGGTGGTTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTC
1 GGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTC
*
10895910 TTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCATTGCTGCT
66 TTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCTGCT
*
10895975 CAG
131 CAA
10895978 GGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTC
1 GGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTC
* * * *
10896043 TTGATCTACTCCACTACTGCTTAGGGAGACAGGACCTTCAATCTTTAACCTACTCCACTGCTGCT
66 TTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCTGCT
10896108 C-A
131 CAA
10896110 GTGAGATAAGG-CTGGTG
1 G-GAGAT-AGGACTGGTG
10896127 TTTTCAAACT
Statistics
Matches: 265, Mismatches: 14, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
132 64 0.24
133 198 0.75
134 3 0.01
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (133 bp):
GGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTC
TTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCTGCT
CAA
Found at i:10896216 original size:89 final size:87
Alignment explanation
Indices: 10896106--10896443 Score: 351
Period size: 89 Copynumber: 3.8 Consensus size: 87
10896096 TCCACTGCTG
* * * * * *
10896106 CTCAGTGAGATAAGGCTGGTGTTTTCAAACTACTTCACTGCTAGTATAGGAAGACAAGATCTACT
1 CTCAGGGAGATAAGGCTGGTGTTTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTACT
*
10896171 -GCTTTCATTCTGCTCTACTGTAAA
66 ATC-TTCATTCTGCTC--CTGTAAA
* * *
10896195 CTCAGGGAGGTAAGGCTGGTGTATTT-GATCTACTTTACTGCCAATACAGGAAGACAAGATCTGC
1 CTCAGGGAGATAAGGCTGGTGT-TTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTAC
10896259 TATCTTCAGTT-TGCTCCGTCGTAAA
65 TATCTTCA-TTCTGCTCC-T-GTAAA
** * * *
10896284 CTCAGGGAGGCAAGGCTGGTGTATTCGATCTACTTCGCTGCCAATACAGGAAGGCAAGATCTACT
1 CTCAGGGAGATAAGGCTGGTGTTTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTACT
*
10896349 ATCTTCAGTCTGCTCC-GCTACAAA
66 ATCTTCATTCTGCTCCTG-T--AAA
* * * * * * *
10896373 CTCAAGGAGATCAGGCTGGTGTCTTCGATCTACTTCGCTACCAGTACAGGAAGACAAGATCTGCT
1 CTCAGGGAGATAAGGCTGGTGTTTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTACT
10896438 ATCTTC
66 ATCTTC
10896444 TTCAATCCAT
Statistics
Matches: 213, Mismatches: 26, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
86 1 0.00
87 2 0.01
88 4 0.02
89 200 0.94
90 6 0.03
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (87 bp):
CTCAGGGAGATAAGGCTGGTGTTTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTACT
ATCTTCATTCTGCTCCTGTAAA
Found at i:10896423 original size:178 final size:178
Alignment explanation
Indices: 10896117--10896443 Score: 431
Period size: 178 Copynumber: 1.8 Consensus size: 178
10896107 TCAGTGAGAT
* * * * *
10896117 AAGGCTGGTGTTTTCAAACTACTTCACTGCTAGTATAGGAAGACAAGATCTACTGCTTTCATTCT
1 AAGGCTGGTGTATTCAAACTACTTCACTGCCAATACAGGAAGACAAGATCTACTGCTTTCAGTCT
* ** * * * * *
10896182 GCTCTACTGTAAACTCAGGGAGGTAAGGCTGGTGTATTTGATCTACTTTACTGCCAATACAGGAA
66 GCTCCACTACAAACTCAAGGAGATAAGGCTGGTGTATTCGATCTACTTCACTACCAATACAGGAA
10896247 GACAAGATCTGCTATCTTCAGTTTGCTCCGTCGTAAACTCAGGGAGGC
131 GACAAGATCTGCTATCTTCAGTTTGCTCCGTCGTAAACTCAGGGAGGC
* * * * *
10896295 AAGGCTGGTGTATTCGATCTACTTCGCTGCCAATACAGGAAGGCAAGATCTACT-ATCTTCAGTC
1 AAGGCTGGTGTATTCAAACTACTTCACTGCCAATACAGGAAGACAAGATCTACTGCT-TTCAGTC
* * * * *
10896359 TGCTCCGCTACAAACTCAAGGAGATCAGGCTGGTGTCTTCGATCTACTTCGCTACCAGTACAGGA
65 TGCTCCACTACAAACTCAAGGAGATAAGGCTGGTGTATTCGATCTACTTCACTACCAATACAGGA
10896424 AGACAAGATCTGCTATCTTC
130 AGACAAGATCTGCTATCTTC
10896444 TTCAATCCAT
Statistics
Matches: 125, Mismatches: 23, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
177 1 0.01
178 124 0.99
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (178 bp):
AAGGCTGGTGTATTCAAACTACTTCACTGCCAATACAGGAAGACAAGATCTACTGCTTTCAGTCT
GCTCCACTACAAACTCAAGGAGATAAGGCTGGTGTATTCGATCTACTTCACTACCAATACAGGAA
GACAAGATCTGCTATCTTCAGTTTGCTCCGTCGTAAACTCAGGGAGGC
Found at i:10904674 original size:6 final size:6
Alignment explanation
Indices: 10904656--10904686 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
10904646 TGCAAATGAA
10904656 TCATTT CTCATTT TCATTT TCATTT TCATTT
1 TCATTT -TCATTT TCATTT TCATTT TCATTT
10904687 CTATTTTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.16, C:0.19, G:0.00, T:0.65
Consensus pattern (6 bp):
TCATTT
Found at i:10904680 original size:12 final size:13
Alignment explanation
Indices: 10904656--10904693 Score: 62
Period size: 12 Copynumber: 3.1 Consensus size: 13
10904646 TGCAAATGAA
10904656 TCATTTCTCATTT
1 TCATTTCTCATTT
10904669 TCATTT-TCATTT
1 TCATTTCTCATTT
10904681 TCATTTCT-ATTT
1 TCATTTCTCATTT
10904693 T
1 T
10904694 GAGGAAACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 17 0.71
13 7 0.29
ACGTcount: A:0.16, C:0.18, G:0.00, T:0.66
Consensus pattern (13 bp):
TCATTTCTCATTT
Found at i:10915285 original size:35 final size:35
Alignment explanation
Indices: 10915239--10915308 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
10915229 TCGTATTATA
10915239 TAATACTATCAAACCCATGGTTCACCTCATGAATG
1 TAATACTATCAAACCCATGGTTCACCTCATGAATG
*
10915274 TAATACTATCAAACCCGTGGTTCACCTCATGAATG
1 TAATACTATCAAACCCATGGTTCACCTCATGAATG
10915309 GACTGACACC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.29
Consensus pattern (35 bp):
TAATACTATCAAACCCATGGTTCACCTCATGAATG
Found at i:10925867 original size:15 final size:15
Alignment explanation
Indices: 10925842--10925876 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
10925832 GACTCTATTT
*
10925842 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
10925856 TAATTAATATTAAGA
1 TAATTAATATTAAGA
10925871 TAATTA
1 TAATTA
10925877 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:10928095 original size:13 final size:13
Alignment explanation
Indices: 10928077--10928101 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10928067 ACAAACGATA
10928077 AAATTTTCACACG
1 AAATTTTCACACG
10928090 AAATTTTCACAC
1 AAATTTTCACAC
10928102 ATATAAATCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:10928525 original size:48 final size:48
Alignment explanation
Indices: 10928409--10928635 Score: 149
Period size: 48 Copynumber: 4.6 Consensus size: 48
10928399 GAGCTCATGT
* * * **
10928409 GAGCCATGTAACGGGAAGCTTATATGGGCTGCATAACGGGAAGCTCATAA
1 GAGCCAT-TAACGGGAAGCTCATATGAGCT-AATAACGGGAAGCTCCGAA
* * *
10928459 GAGCCA-TAATCAGAAAGCTCATATGAGCTAATAACGGGTAGCTCCGAA
1 GAGCCATTAA-CGGGAAGCTCATATGAGCTAATAACGGGAAGCTCCGAA
* * * * *
10928507 GAGCCATTAACGGGAAGCTCCAGAT-AGCCATATATCGGGAAG-TTCAAA
1 GAGCCATTAACGGGAAGCT-CATATGAGCTA-ATAACGGGAAGCTCCGAA
* * * *
10928555 CGAGCCA-TATCGGGAAGCTCATAAAGAGACT-TTAATCGAGAAGCTCACGAA
1 -GAGCCATTAACGGGAAGCTCAT-ATGAG-CTAATAA-CGGGAAGCTC-CGAA
* *
10928606 GAGCCATATAACGGGACGCTCATAAGAGCT
1 GAGCCAT-TAACGGGAAGCTCATATGAGCT
10928636 GTGGTGTGTC
Statistics
Matches: 137, Mismatches: 27, Indels: 26
0.72 0.14 0.14
Matches are distributed among these distances:
47 2 0.01
48 53 0.39
49 45 0.33
50 16 0.12
51 8 0.06
52 13 0.09
ACGTcount: A:0.35, C:0.21, G:0.26, T:0.19
Consensus pattern (48 bp):
GAGCCATTAACGGGAAGCTCATATGAGCTAATAACGGGAAGCTCCGAA
Found at i:10928626 original size:26 final size:25
Alignment explanation
Indices: 10928441--10928634 Score: 118
Period size: 24 Copynumber: 7.9 Consensus size: 25
10928431 TATGGGCTGC
*
10928441 ATAACGGGAAGCTCATAAGAGCCAT
1 ATAACGGGAAGCTCACAAGAGCCAT
* * * * * *
10928466 A-ATCAGAAAGCTCATATGAGCTA-
1 ATAACGGGAAGCTCACAAGAGCCAT
*
10928489 ATAACGGGTAGCTC-CGAAGAGCCAT
1 ATAACGGGAAGCTCAC-AAGAGCCAT
*
10928514 -TAACGGGAAGCTC-CAGATAGCCAT
1 ATAACGGGAAGCTCACA-AGAGCCAT
* *
10928538 ATATCGGGAAGTTCA-AACGAGCCAT
1 ATAACGGGAAGCTCACAA-GAGCCAT
* *
10928563 AT--CGGGAAGCTCATAAAGAGAC-T
1 ATAACGGGAAGCTCA-CAAGAGCCAT
* *
10928586 TTAATCGAGAAGCTCACGAAGAGCCAT
1 ATAA-CGGGAAGCTCAC-AAGAGCCAT
* *
10928613 ATAACGGGACGCTCATAAGAGC
1 ATAACGGGAAGCTCACAAGAGC
10928635 TGTGGTGTGT
Statistics
Matches: 128, Mismatches: 27, Indels: 28
0.70 0.15 0.15
Matches are distributed among these distances:
23 14 0.11
24 56 0.44
25 29 0.23
26 25 0.20
27 4 0.03
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (25 bp):
ATAACGGGAAGCTCACAAGAGCCAT
Found at i:10928634 original size:25 final size:25
Alignment explanation
Indices: 10928384--10928634 Score: 151
Period size: 25 Copynumber: 10.2 Consensus size: 25
10928374 GTCCTCTTTC
**
10928384 GAGCCATATAACGTGG-AGCTCATGT
1 GAGCCATATAACG-GGAAGCTCATAA
* * *
10928409 GAGCCATGTAACGGGAAGCTTATAT
1 GAGCCATATAACGGGAAGCTCATAA
* ***
10928434 GGGCTGCATAACGGGAAGCTCATAA
1 GAGCCATATAACGGGAAGCTCATAA
* * * *
10928459 GAGCCATA-ATCAGAAAGCTCATAT
1 GAGCCATATAACGGGAAGCTCATAA
* * **
10928483 GAGCTA-ATAACGGGTAGCTCCGAA
1 GAGCCATATAACGGGAAGCTCATAA
*
10928507 GAGCCAT-TAACGGGAAGCTCCA-GA
1 GAGCCATATAACGGGAAGCT-CATAA
* * *
10928531 TAGCCATATATCGGGAAGTTCA-AA
1 GAGCCATATAACGGGAAGCTCATAA
10928555 CGAGCCATAT--CGGGAAGCTCATAAA
1 -GAGCCATATAACGGGAAGCTCAT-AA
* * * *
10928580 GAGAC-TTTAATCGAGAAGCTCACGAA
1 GAGCCATATAA-CGGGAAGCTCA-TAA
*
10928606 GAGCCATATAACGGGACGCTCATAA
1 GAGCCATATAACGGGAAGCTCATAA
10928631 GAGC
1 GAGC
10928635 TGTGGTGTGT
Statistics
Matches: 168, Mismatches: 45, Indels: 26
0.70 0.19 0.11
Matches are distributed among these distances:
23 13 0.08
24 58 0.35
25 68 0.40
26 25 0.15
27 4 0.02
ACGTcount: A:0.35, C:0.21, G:0.26, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCATAA
Found at i:10928725 original size:24 final size:24
Alignment explanation
Indices: 10928694--10928750 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
10928684 CAGGAACCAT
*
10928694 ATAACGGGAAGCTCGA-GAGGGCTA
1 ATAACGGGAAGCTC-ATGAGAGCTA
*
10928718 ATAACGGGATGCTCATGAGAGCTA
1 ATAACGGGAAGCTCATGAGAGCTA
10928742 ATAACGGGA
1 ATAACGGGA
10928751 CACTCTTTCG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 1 0.03
24 29 0.97
ACGTcount: A:0.35, C:0.16, G:0.33, T:0.16
Consensus pattern (24 bp):
ATAACGGGAAGCTCATGAGAGCTA
Found at i:10929307 original size:29 final size:29
Alignment explanation
Indices: 10929247--10929313 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
10929237 CATTTACAGC
* *
10929247 CCATGAATTTTATAAAATTTAAAATTTTT
1 CCATGAATTTTACAAAATTTAAAATTTGT
* *
10929276 CCATGAATTTTACAACA-TTACAATTTAGT
1 CCATGAATTTTACAAAATTTAAAATTT-GT
*
10929305 CCATAAATT
1 CCATGAATT
10929314 ACAATTTTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 8 0.25
29 24 0.75
ACGTcount: A:0.40, C:0.13, G:0.04, T:0.42
Consensus pattern (29 bp):
CCATGAATTTTACAAAATTTAAAATTTGT
Found at i:10934913 original size:22 final size:21
Alignment explanation
Indices: 10934888--10934936 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 21
10934878 TTATATTAAA
*
10934888 TTATAAATATTGAAAAAT-CATT
1 TTATAAATA-T-AAAAATACAGT
10934910 TTATTAAATATAAAAATACAGT
1 TTA-TAAATATAAAAATACAGT
10934932 TTATA
1 TTATA
10934937 TCCAATATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 8 0.33
22 10 0.42
23 6 0.25
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (21 bp):
TTATAAATATAAAAATACAGT
Found at i:10939388 original size:21 final size:21
Alignment explanation
Indices: 10939359--10939398 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
10939349 TATTTAAGCT
10939359 TTTACAATCCAATTAGTATGGG
1 TTTACAATCCAATTA-TATGGG
*
10939381 TTTA-AATCTAATTATATG
1 TTTACAATCCAATTATATG
10939399 CATATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 9 0.53
22 4 0.24
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.42
Consensus pattern (21 bp):
TTTACAATCCAATTATATGGG
Found at i:10944360 original size:98 final size:98
Alignment explanation
Indices: 10944187--10944381 Score: 354
Period size: 98 Copynumber: 2.0 Consensus size: 98
10944177 TACAATAAAA
*
10944187 CTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTC
1 CTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTC
*
10944252 CTCTAGAATCCCAAACTCGAAATATTTCCTTTT
66 CTCTAAAATCCCAAACTCGAAATATTTCCTTTT
*
10944285 CTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACTCAATACGTTAGGGCACAATTC
1 CTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTC
*
10944350 CTTTAAAATCCCAAACTCGAAATATTTCCTTT
66 CTCTAAAATCCCAAACTCGAAATATTTCCTTT
10944382 ATTATTTTAA
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.37, C:0.25, G:0.09, T:0.29
Consensus pattern (98 bp):
CTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTC
CTCTAAAATCCCAAACTCGAAATATTTCCTTTT
Found at i:10944675 original size:9 final size:9
Alignment explanation
Indices: 10944661--10944685 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
10944651 TGCAAATGCT
10944661 ATAATAACA
1 ATAATAACA
10944670 ATAATAACA
1 ATAATAACA
10944679 ATAATAA
1 ATAATAA
10944686 ATACATCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (9 bp):
ATAATAACA
Found at i:10945774 original size:21 final size:19
Alignment explanation
Indices: 10945737--10945811 Score: 123
Period size: 19 Copynumber: 3.8 Consensus size: 19
10945727 AATCATATAT
10945737 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
10945756 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
10945777 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
10945796 TCTAGGATTGCATATC
1 TCTAAGATTGCATATC
10945812 CTCAAAAGTT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
19 34 0.64
21 19 0.36
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:10958307 original size:2 final size:2
Alignment explanation
Indices: 10958300--10958336 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
10958290 CAAGTTAATT
*
10958300 AG AG AG AG AG AG AG AG AC AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
10958337 TGGTGTAGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.03, G:0.46, T:0.00
Consensus pattern (2 bp):
AG
Found at i:10960189 original size:7 final size:6
Alignment explanation
Indices: 10960170--10960199 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
10960160 TTAATTTCAC
*
10960170 AATAAA ATTAAA AATAAA AATAAA AATAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA
10960200 TAAAGTGTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
AATAAA
Done.