Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62681010
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1052928 characters in sequence are not A, C, G, or T
File 45 of 210
Found at i:14098688 original size:22 final size:20
Alignment explanation
Indices: 14098653--14098790 Score: 77
Period size: 22 Copynumber: 6.2 Consensus size: 20
14098643 ATTAAATTAG
14098653 GTTAAGGTTAGGGTTTTTAA
1 GTTAAGGTTAGGGTTTTTAA
14098673 GTTAAGGGTTTAGGGTTTTTAATTAAATTA
1 GTTAA-GG-TTAGGG--TTT--TT--A--A
*
14098703 GGTTAAGGTTAGGGTTTTCAA
1 -GTTAAGGTTAGGGTTTTTAA
14098724 GTTAAGGGTTTAGGGTTTTTAA
1 GTTAA-GG-TTAGGGTTTTTAA
14098746 -TTAAATTAGGTTAGGGTTTTTAA
1 GTT--A--AGGTTAGGGTTTTTAA
*
14098769 -TTAA-ATTAGGGTTTTTAA
1 GTTAAGGTTAGGGTTTTTAA
14098787 -TTAA
1 GTTAA
14098791 ATTAGGTTAG
Statistics
Matches: 98, Mismatches: 3, Indels: 36
0.72 0.02 0.26
Matches are distributed among these distances:
18 17 0.17
19 1 0.01
20 10 0.10
21 8 0.08
22 18 0.18
23 17 0.17
24 5 0.05
25 2 0.02
26 2 0.02
27 3 0.03
28 1 0.01
29 6 0.06
30 3 0.03
31 5 0.05
ACGTcount: A:0.28, C:0.01, G:0.25, T:0.46
Consensus pattern (20 bp):
GTTAAGGTTAGGGTTTTTAA
Found at i:14098694 original size:51 final size:50
Alignment explanation
Indices: 14098631--14098877 Score: 278
Period size: 51 Copynumber: 4.9 Consensus size: 50
14098621 TTAAATTAGG
*
14098631 TTAGGCTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAAGTTAAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAA-TTAAGGGT
*
14098682 TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTCAAGTTAAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAA-TTAAGGGT
*
14098733 TTAGGGTTTTTAATT-AA--A--TT-AGGTTAGGGTTTTTAATTAA---A
1 TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATTAAGGGT
* * *
14098774 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGATTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATT--A--A-G---GGT
*
14098832 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAA
1 TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATTAA
14098878 TTTAGGTTAG
Statistics
Matches: 171, Mismatches: 8, Indels: 31
0.81 0.04 0.15
Matches are distributed among these distances:
41 15 0.09
42 2 0.01
44 5 0.03
45 15 0.09
46 4 0.02
47 16 0.09
48 1 0.01
49 1 0.01
50 2 0.01
51 65 0.38
54 1 0.01
56 1 0.01
58 43 0.25
ACGTcount: A:0.29, C:0.01, G:0.25, T:0.46
Consensus pattern (50 bp):
TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATTAAGGGT
Found at i:14098770 original size:18 final size:18
Alignment explanation
Indices: 14098733--14098796 Score: 83
Period size: 18 Copynumber: 3.3 Consensus size: 18
14098723 AGTTAAGGGT
14098733 TTAGGGTTTTTAATTAAATTA
1 TTAGGGTTTTTAATT-AA--A
14098754 GGTTAGGGTTTTTAATTAAA
1 --TTAGGGTTTTTAATTAAA
14098774 TTAGGGTTTTTAATTAAA
1 TTAGGGTTTTTAATTAAA
14098792 TTAGG
1 TTAGG
14098797 TTAGGGTTAG
Statistics
Matches: 41, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
18 23 0.56
20 1 0.02
22 2 0.05
23 15 0.37
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.48
Consensus pattern (18 bp):
TTAGGGTTTTTAATTAAA
Found at i:14098816 original size:29 final size:29
Alignment explanation
Indices: 14098774--14098898 Score: 223
Period size: 29 Copynumber: 4.3 Consensus size: 29
14098764 TTTAATTAAA
14098774 TTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
*
14098803 TTAGGATTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
14098832 TTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
*
14098861 TTAGGGTTTTTAATTAATTTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
14098890 TTTAGGGTT
1 -TTAGGGTT
14098899 AAATTAGGTT
Statistics
Matches: 92, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
29 84 0.91
30 8 0.09
ACGTcount: A:0.26, C:0.00, G:0.27, T:0.46
Consensus pattern (29 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGG
Found at i:14098860 original size:23 final size:23
Alignment explanation
Indices: 14098598--14098918 Score: 156
Period size: 23 Copynumber: 13.0 Consensus size: 23
14098588 TGTAACATTG
* * *
14098598 TTAACTTAGTTTAGGATTTTTAA
1 TTAAATTAGGTTAGGGTTTTTAA
*
14098621 TTAAATTAGGTTAGGCTTTTTAA
1 TTAAATTAGGTTAGGGTTTTTAA
*
14098644 TTAAATTAGGTTAAGGTTAGGGTTT--
1 TTAAATTAGGTTAGGGTT----TTTAA
*
14098669 TTAAGTTAAGGGTTTAGGGTTTTTAA
1 TTAAATT-A-GG-TTAGGGTTTTTAA
*
14098695 TTAAATTAGGTTAAGGTTAGGGTTT--
1 TTAAATTAGGTTAGGGTT----TTTAA
* *
14098720 TCAAGTTAAGGGTTTAGGGTTTTTAA
1 TTAAATT-A-GG-TTAGGGTTTTTAA
14098746 TTAAATTAGGTTAGGGTTTTTAA
1 TTAAATTAGGTTAGGGTTTTTAA
14098769 TT-AA--A--TTAGGGTTTTTAA
1 TTAAATTAGGTTAGGGTTTTTAA
14098787 TTAAATTAGGTTAGGGTTAGGATTTTTAA
1 TTAAATTAGGTTA--G---GG-TTTTTAA
14098816 TTAAATTAGGTTAGGGTTAGGGTTTTTAA
1 TT-AA--A--TTA-GGTTAGGGTTTTTAA
14098845 TTAAATTAGGTTAGGGTTAGGGTTTTTAA
1 TT-AA--A--TTA-GGTTAGGGTTTTTAA
* ****
14098874 TTAATTTAGGTTAGGGTTTAGGG
1 TTAAATTAGGTTAGGGTTTTTAA
*
14098897 TTAAATTAGGTTAAGGTTTTTA
1 TTAAATTAGGTTAGGGTTTTTA
14098919 TTACATCAAA
Statistics
Matches: 239, Mismatches: 24, Indels: 70
0.72 0.07 0.21
Matches are distributed among these distances:
18 15 0.06
19 2 0.01
20 1 0.00
21 1 0.00
22 2 0.01
23 89 0.37
24 13 0.05
25 14 0.06
26 13 0.05
27 10 0.04
28 18 0.08
29 47 0.20
30 4 0.02
32 1 0.00
33 1 0.00
34 3 0.01
35 5 0.02
ACGTcount: A:0.29, C:0.01, G:0.24, T:0.46
Consensus pattern (23 bp):
TTAAATTAGGTTAGGGTTTTTAA
Found at i:14098967 original size:45 final size:44
Alignment explanation
Indices: 14098914--14099080 Score: 174
Period size: 44 Copynumber: 3.6 Consensus size: 44
14098904 AGGTTAAGGT
** *
14098914 TTTTATTACATCAAATAATATCAAAATAACTCGAAAATTTTTTTA
1 TTTTATTACATCAAATAATATCAAAATAACTC-AAAAAATTTCTA
** * *
14098959 TTTTATTACATCAAATAA-ACTTCTATTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAATA--TC-A--AAATAAC-TCAAA-AAATTTCTA
14099009 TTTTATTACATCAAATAATATCAAAATAACTCAAAAAATTTCTA
1 TTTTATTACATCAAATAATATCAAAATAACTCAAAAAATTTCTA
* *
14099053 TTTTTTTACATAAAATAATATCAAAATA
1 TTTTATTACATCAAATAATATCAAAATA
14099081 TTCAAACTAT
Statistics
Matches: 101, Mismatches: 13, Indels: 17
0.77 0.10 0.13
Matches are distributed among these distances:
44 35 0.35
45 23 0.23
46 6 0.06
47 1 0.01
48 1 0.01
49 9 0.09
50 25 0.25
51 1 0.01
ACGTcount: A:0.46, C:0.13, G:0.01, T:0.41
Consensus pattern (44 bp):
TTTTATTACATCAAATAATATCAAAATAACTCAAAAAATTTCTA
Found at i:14098985 original size:25 final size:25
Alignment explanation
Indices: 14098957--14099026 Score: 140
Period size: 25 Copynumber: 2.8 Consensus size: 25
14098947 AAAATTTTTT
14098957 TATTTTATTACATCAAATAAACTTC
1 TATTTTATTACATCAAATAAACTTC
14098982 TATTTTATTACATCAAATAAACTTC
1 TATTTTATTACATCAAATAAACTTC
14099007 TATTTTATTACATCAAATAA
1 TATTTTATTACATCAAATAA
14099027 TATCAAAATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.41, C:0.14, G:0.00, T:0.44
Consensus pattern (25 bp):
TATTTTATTACATCAAATAAACTTC
Found at i:14101289 original size:22 final size:22
Alignment explanation
Indices: 14101264--14101319 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
14101254 AAATATGGAT
14101264 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
14101286 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
14101308 TTGAGAAGAATT
1 TTGAG-AGAATT
14101320 GAGAGGAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 27 0.82
23 6 0.18
ACGTcount: A:0.41, C:0.00, G:0.30, T:0.29
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:14108215 original size:15 final size:15
Alignment explanation
Indices: 14108195--14108225 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14108185 AGCTTGAGGT
14108195 GAAGATCAAGATAAA
1 GAAGATCAAGATAAA
*
14108210 GAAGATGAAGATAAA
1 GAAGATCAAGATAAA
14108225 G
1 G
14108226 TAGTGGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.03, G:0.26, T:0.13
Consensus pattern (15 bp):
GAAGATCAAGATAAA
Found at i:14109587 original size:28 final size:28
Alignment explanation
Indices: 14109555--14109634 Score: 106
Period size: 28 Copynumber: 2.9 Consensus size: 28
14109545 GGCAAAGGTT
*
14109555 AACAGAGAGCTCACACAAAGCAGAGCCA
1 AACAGAGAGCTCACACAAAGCAAAGCCA
* ** *
14109583 AACAGAGAGTTCGTACAAAGTAAAGCCA
1 AACAGAGAGCTCACACAAAGCAAAGCCA
*
14109611 AAAAGAGAGCTCACACAAAGCAAA
1 AACAGAGAGCTCACACAAAGCAAA
14109635 CTTAGCAGAA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.50, C:0.23, G:0.20, T:0.07
Consensus pattern (28 bp):
AACAGAGAGCTCACACAAAGCAAAGCCA
Found at i:14111999 original size:17 final size:17
Alignment explanation
Indices: 14111974--14112020 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
14111964 CCAAATTTCT
*
14111974 AACCCTAAACCTTAAAA
1 AACCTTAAACCTTAAAA
* *
14111991 AACCTTAAACATTTAAA
1 AACCTTAAACCTTAAAA
14112008 AA-CTGTAAACCTT
1 AACCT-TAAACCTT
14112021 TTAAAAAGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 2 0.08
17 23 0.92
ACGTcount: A:0.49, C:0.23, G:0.02, T:0.26
Consensus pattern (17 bp):
AACCTTAAACCTTAAAA
Found at i:14114694 original size:33 final size:33
Alignment explanation
Indices: 14114657--14114771 Score: 103
Period size: 33 Copynumber: 3.5 Consensus size: 33
14114647 AGATTAATTT
14114657 ATATTTTATGTATCATTATATTAAATTATTTAA
1 ATATTTTATGTATCATTATATTAAATTATTTAA
* * * * *
14114690 ATATTTCATATGTCAATACATTAAATTATTTAA
1 ATATTTTATGTATCATTATATTAAATTATTTAA
* * *
14114723 ATATATTTAT-TATTA-TAT-TTAAGTT-TTCAAA
1 ATAT-TTTATGTATCATTATATTAAATTATT-TAA
*
14114754 ATATTTTATGTATTATTA
1 ATATTTTATGTATCATTA
14114772 ATTTTACAAA
Statistics
Matches: 67, Mismatches: 11, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
30 7 0.10
31 17 0.25
32 4 0.06
33 35 0.52
34 4 0.06
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.53
Consensus pattern (33 bp):
ATATTTTATGTATCATTATATTAAATTATTTAA
Found at i:14115030 original size:18 final size:18
Alignment explanation
Indices: 14114995--14115030 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
14114985 TCTATCACAC
*
14114995 TTTTCAAAAGTACTTTTT
1 TTTTCAAAAGCACTTTTT
14115013 TTTTCTAAAAGCACTTTT
1 TTTTC-AAAAGCACTTTT
14115031 CAATCACAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.28, C:0.14, G:0.06, T:0.53
Consensus pattern (18 bp):
TTTTCAAAAGCACTTTTT
Found at i:14121201 original size:23 final size:24
Alignment explanation
Indices: 14121175--14121220 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
14121165 AAATTTAGGC
*
14121175 ATAAATTATA-AAAATTAATTTAA
1 ATAAATTAAATAAAATTAATTTAA
*
14121198 ATAAATTAAATAAAATTATTTTA
1 ATAAATTAAATAAAATTAATTTA
14121221 TCCAATAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (24 bp):
ATAAATTAAATAAAATTAATTTAA
Found at i:14124404 original size:38 final size:39
Alignment explanation
Indices: 14124354--14124443 Score: 89
Period size: 38 Copynumber: 2.4 Consensus size: 39
14124344 TTGCATGAAC
14124354 AACATG-CTTACTGTC-ACTAATAAATC-AAATACATGACA
1 AACATGTC-TACTGTCTACT-ATAAATCTAAATACATGACA
* ** **
14124392 AACATGTCTACTG-CTACTGTTGATCTAAATACATGTTA
1 AACATGTCTACTGTCTACTATAAATCTAAATACATGACA
14124430 AACATGTCTACTGT
1 AACATGTCTACTGT
14124444 TTTTGTACTG
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
37 5 0.12
38 37 0.86
39 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (39 bp):
AACATGTCTACTGTCTACTATAAATCTAAATACATGACA
Found at i:14126792 original size:38 final size:38
Alignment explanation
Indices: 14126746--14126845 Score: 128
Period size: 39 Copynumber: 2.6 Consensus size: 38
14126736 GAAATTCTTG
* *
14126746 TTATAATTATTGTAATTATAATTTACGATCGAATATTA
1 TTATAATTATTGTAATTATAATTTACGATCAAACATTA
* * *
14126784 TTATAATTATTGTAATTGTAATTTTTCGGTCAAACATTA
1 TTATAATTATTGTAATTATAA-TTTACGATCAAACATTA
* *
14126823 TTATAACTATGGTAATTATAATT
1 TTATAATTATTGTAATTATAATT
14126846 ATTATAATCG
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
38 22 0.42
39 31 0.58
ACGTcount: A:0.37, C:0.06, G:0.09, T:0.48
Consensus pattern (38 bp):
TTATAATTATTGTAATTATAATTTACGATCAAACATTA
Found at i:14134764 original size:14 final size:14
Alignment explanation
Indices: 14134745--14134771 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14134735 CATCATTTGT
14134745 CTATAACCAAAACC
1 CTATAACCAAAACC
14134759 CTATAACCAAAAC
1 CTATAACCAAAAC
14134772 TCATAAACCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.15
Consensus pattern (14 bp):
CTATAACCAAAACC
Found at i:14146488 original size:18 final size:18
Alignment explanation
Indices: 14146448--14146489 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
14146438 ACAAGCATAC
* *
14146448 ATATAAAAAAAAGATAGT
1 ATATAAAAAAAAGAAACT
14146466 ATATAAAACAAAAGAAACT
1 ATATAAAA-AAAAGAAACT
14146485 -TATAA
1 ATATAA
14146490 TAATTTCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.67, C:0.05, G:0.07, T:0.21
Consensus pattern (18 bp):
ATATAAAAAAAAGAAACT
Found at i:14148040 original size:48 final size:48
Alignment explanation
Indices: 14147981--14148077 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
14147971 CTTCAGTGCT
*
14147981 TCTCTTCTTCAGGTAGCCTTATTCCATCCCCTTGCATCTTCAGAGGTA
1 TCTCTTCTTCAGGTAGCCTTATTCCATCCCCCTGCATCTTCAGAGGTA
14148029 TCTCTTCTTCAGGTAGCCTTATTCCATCCCCCTGCATCTTCAGAGGTA
1 TCTCTTCTTCAGGTAGCCTTATTCCATCCCCCTGCATCTTCAGAGGTA
14148077 T
1 T
14148078 AGGAACTAGT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.16, C:0.32, G:0.14, T:0.37
Consensus pattern (48 bp):
TCTCTTCTTCAGGTAGCCTTATTCCATCCCCCTGCATCTTCAGAGGTA
Found at i:14148489 original size:44 final size:44
Alignment explanation
Indices: 14148441--14148555 Score: 175
Period size: 40 Copynumber: 2.7 Consensus size: 44
14148431 CTACTTCGTG
*
14148441 CCAATACATGAAGACAAGATCTGCTTTCTTCGATTTACATCACA
1 CCAATACATGAAGACAAGATCTACTTTCTTCGATTTACATCACA
* *
14148485 CC---A-ATGAAGACAAGATCTACTTTCTTCGATTTACTTCACG
1 CCAATACATGAAGACAAGATCTACTTTCTTCGATTTACATCACA
14148525 CCAATACATGAAGACAAGATCTACTTTCTTC
1 CCAATACATGAAGACAAGATCTACTTTCTTC
14148556 AATCGATTCC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
40 36 0.56
41 1 0.02
43 1 0.02
44 26 0.41
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.30
Consensus pattern (44 bp):
CCAATACATGAAGACAAGATCTACTTTCTTCGATTTACATCACA
Found at i:14148746 original size:132 final size:132
Alignment explanation
Indices: 14148551--14149344 Score: 1173
Period size: 132 Copynumber: 6.0 Consensus size: 132
14148541 AGATCTACTT
* * * *
14148551 TCTTCAATCGATTCCACTGCCGACCAGGGAGATAGAATTACTGGCTTCAATATACTCCACTGTAA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
* *
14148616 CCTCAGGGAGGTAAAATCTGCCAT-TTTCGATCTACTCCACTACTGCCTAAGGAGATAATATCTG
66 CCTCAGGGAGGTAAAATCTGCCATCTTT-GATCTACTCCACTACTGCCTAGGGAGATAAGATCTG
14148680 TAA
130 TAA
* * * *
14148683 TCTTTAATCTATTCCACTGCTGCCCAGGAAGATAGAATTACTGGCTTCAGTGTACTCTACTGTAA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
* *
14148748 CCTCAGGGAGATAAAATCTGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGT
66 CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGT
14148813 AA
131 AA
* * *
14148815 TCTTCAATCTATTCTACTGCTGCCTAGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
** * * * * *
14148880 CCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTCCATTTCTACTTAGGGAGATAAGATCTGT
66 CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGT
14148945 AA
131 AA
* *
14148947 TCTTCAATCTATTCCACTGTTGCCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
** * *
14149012 CCTCAAAGAGGTAAAATCTGCCAT-TTTCGATCTACTCCAATATTGCCTAGGGAGATAAGATCTG
66 CCTCAGGGAGGTAAAATCTGCCATCTTT-GATCTACTCCACTACTGCCTAGGGAGATAAGATCTG
14149076 TAA
130 TAA
*
14149079 TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTATAA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * * * * *
14149144 CCTCAGAGAGGTAAAATCAGCCATCATTGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGT
66 CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGT
14149209 AA
131 AA
* *
14149211 TCTTCAATATATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
** * *
14149276 CCTCAGGGAGGT--AATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
66 CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGT
14149339 AA
131 AA
14149341 TCTT
1 TCTT
14149345 TGATCTACTT
Statistics
Matches: 599, Mismatches: 60, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
130 53 0.09
131 3 0.01
132 539 0.90
133 4 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (132 bp):
TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
CCTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGT
AA
Found at i:14149378 original size:44 final size:44
Alignment explanation
Indices: 14149330--14149664 Score: 291
Period size: 44 Copynumber: 7.5 Consensus size: 44
14149320 TTAGGGAGAT
*
14149330 AAGATCTGTAATCTTTGATCTACTTCACGCCAGTACATGAAGAC
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGAC
* * * *** *
14149374 AAGATCTGCTT-TCTTCGATCTACTTCGCCACCAGTATGGGAAGAT
1 AAGATCTG-TTATCTTTGATCTACTTC-ACGCCAGTACATGAAGAC
* * *
14149419 GAGATCTGTTATCTTTGATCTACTTCACGCCAGTCCATGATGAC
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGAC
* * * * ***
14149463 AAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGAC
1 AAGATCTGTTATCTTTGATCTACTTC-ACGCCAGTACATGAAGAC
* * *
14149508 AAGATCTATTATCTTTTATCTACTTCGCGCCAGTACATGAAGAC
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGAC
* ** * * ***
14149552 AAGATCTACTT-T-TTCCAATCTACTTCGCCACCAGTATGGGAAGAC
1 AAGATCT-GTTATCTT-TGATCTACTTC-ACGCCAGTACATGAAGAC
* *
14149597 AAGATCTGTTATTTTTGATCTACTTCACGCTAGTACATGAAGAC
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGAC
*
14149641 AAGATCTGCTT-TCTTCGATCTACT
1 AAGATCTG-TTATCTTTGATCTACT
14149665 CCACTACTGC
Statistics
Matches: 225, Mismatches: 56, Indels: 20
0.75 0.19 0.07
Matches are distributed among these distances:
43 2 0.01
44 120 0.53
45 101 0.45
46 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.33
Consensus pattern (44 bp):
AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGAC
Found at i:14149482 original size:89 final size:89
Alignment explanation
Indices: 14149326--14150283 Score: 730
Period size: 89 Copynumber: 10.8 Consensus size: 89
14149316 CTGCTTAGGG
*
14149326 AGATAAGATCTGTAATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCG
1 AGATAAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCG
14149391 ATCTACTTCGCCACCAGTATGGGA
66 ATCTACTTCGCCACCAGTATGGGA
* * * *
14149415 AGATGAGATCTGTTATCTTTGATCTACTTCACGCCAGTCCATGATGACAAGATCTGTTTTCTTCG
1 AGATAAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCG
14149480 ATCTACTTCGCCACCAGTATGGGA
66 ATCTACTTCGCCACCAGTATGGGA
* * * * *
14149504 AGACAAGATCTATTATCTTTTATCTACTTCGCGCCAGTACATGAAGACAAGATCTACTTT-TTCC
1 AGATAAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTT-C
*
14149568 AATCTACTTCGCCACCAGTATGGGA
65 GATCTACTTCGCCACCAGTATGGGA
* * *
14149593 AGACAAGATCTGTTATTTTTGATCTACTTCACGCTAGTACATGAAGACAAGATCTGCTTTCTTCG
1 AGATAAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCG
* * * *
14149658 ATCTACTCCACTACTGC-CTA-GGG-
66 ATCTACTTCGCCAC--CAGTATGGGA
* * * ** * * ** * **
14149681 AGATAAGATCTGTAAT-TTTCAATCTA-TTCCACTG-CTGCCCAGGGAG-TTAGAAT-TACTGGC
1 AGATAAGATCTGTTATCTTT-GATCTACTT-CAC-GCCAGTACATGAAGACAAG-ATCTGCTTTC
* * * **
14149741 TTCAATGTAC-T--CCA-CTGTAACCTCAGA
62 TTCGATCTACTTCGCCACCAGT-A--TGGGA
* * ** * ** * * * * * *
14149768 GAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTG-CCTAGGGAGATAAGATCTG-TAATCT
1 -AGATAAGATCTGTTATCTTTGATCTACTTCACGCCAGTAC-ATGAAGACAAGATCTGCT-TTCT
* * *
14149831 TCAATCTA-TT--CCACTGCTGCCCA-GGG-
63 TCGATCTACTTCGCCAC--CAG--TATGGGA
** * * ** * * * ** * * **
14149857 AGAT-AGA---GTTACTGGCTTCAATATACTCCACTGTAACCT-CAGGGAGGTAAAATCTACCAT
1 AGATAAGATCTGTTA-T--CTTTGATCTACTTCAC-GCCA-GTACATGAAGACAAGATCTGCTTT
* ** * * * *
14149917 CTTTGATCCGCTCCACTA-CTGCT-TAGGG-
61 CTTCGATCTACTTCGCCACCAG-TAT-GGGA
* *
14149945 AGATAAGATCTGTAATCTTTGATCTACTTCACGCCAGTACAAGAAGACAAGATCTGCTTTCTTCG
1 AGATAAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCG
*
14150010 ATCTACGTCGCCACCAGTATGGGA
66 ATCTACTTCGCCACCAGTATGGGA
** * *
14150034 AGACGAGATCTGTTAGCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCG
1 AGATAAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCG
14150099 ATCTACTTCGCCACCAGTATGGGA
66 ATCTACTTCGCCACCAGTATGGGA
* *
14150123 AGACAAGATCTGTTATCTTTGATCTACTTCACGCTAGTACATGAAGACAAGATCTGCTTTCTTCG
1 AGATAAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCG
14150188 ATCTACTTCGCCACCAGTATGGGA
66 ATCTACTTCGCCACCAGTATGGGA
* * * *
14150212 AGACAAGATATGTTATCTTTGATTTACTTCACGCCAGTACATGAAGACAAGATATGCTTTCTTCG
1 AGATAAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCG
14150277 ATCTACT
66 ATCTACT
14150284 CCACTACTGC
Statistics
Matches: 697, Mismatches: 124, Indels: 96
0.76 0.14 0.10
Matches are distributed among these distances:
81 1 0.00
82 1 0.00
83 1 0.00
84 4 0.01
85 1 0.00
86 1 0.00
87 38 0.05
88 128 0.18
89 506 0.73
90 5 0.01
91 4 0.01
92 6 0.01
93 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (89 bp):
AGATAAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCG
ATCTACTTCGCCACCAGTATGGGA
Found at i:14149689 original size:44 final size:44
Alignment explanation
Indices: 14149641--14149956 Score: 171
Period size: 44 Copynumber: 7.2 Consensus size: 44
14149631 ACATGAAGAC
* *
14149641 AAGATCTGCTTTCTTCGATCTACTCCACTACTGCCTAGGGAGAT
1 AAGATCTGCTATCTTCAATCTACTCCACTACTGCCTAGGGAGAT
* * * *
14149685 AAGATCTG-TAATTTTCAATCTATTCCACTGCTGCCCAGGGAG-T
1 AAGATCTGCT-ATCTTCAATCTACTCCACTACTGCCTAGGGAGAT
* * ** * * * * *
14149728 TAGAAT-TACTGGCTTCAATGTACTCCACT-GTAACCTCAGAGAGGT
1 AAG-ATCTGCTATCTTCAATCTACTCCACTACT-GCCT-AGGGAGAT
* * **
14149773 AAAATCTGCCATCTTTGATCTACTCCACTACTGCCTAGGGAGAT
1 AAGATCTGCTATCTTCAATCTACTCCACTACTGCCTAGGGAGAT
* * *
14149817 AAGATCTG-TAATCTTCAATCTATTCCACTGCTGCCCAGGGAGAT
1 AAGATCTGCT-ATCTTCAATCTACTCCACTACTGCCTAGGGAGAT
* ** * * * *
14149861 -AGAGT-TACTGGCTTCAATATACTCCACT-GTAACCTCAGGGAGGT
1 AAGA-TCTGCTATCTTCAATCTACTCCACTACT-GCCT-AGGGAGAT
* * * ** ** *
14149905 AAAATCTACCATCTTTGATCCGCTCCACTACTGCTTAGGGAGAT
1 AAGATCTGCTATCTTCAATCTACTCCACTACTGCCTAGGGAGAT
14149949 AAGATCTG
1 AAGATCTG
14149957 TAATCTTTGA
Statistics
Matches: 195, Mismatches: 61, Indels: 32
0.68 0.21 0.11
Matches are distributed among these distances:
42 2 0.01
43 42 0.22
44 109 0.56
45 40 0.21
46 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (44 bp):
AAGATCTGCTATCTTCAATCTACTCCACTACTGCCTAGGGAGAT
Found at i:14149813 original size:132 final size:132
Alignment explanation
Indices: 14149652--14149963 Score: 534
Period size: 132 Copynumber: 2.4 Consensus size: 132
14149642 AGATCTGCTT
* *
14149652 TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTTCAATCTATTCCACTGCT
1 TCTTTGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
* * *
14149717 GCCCAGGGAGTTAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCTGC
66 GCCCAGGGAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTAC
14149782 CA
131 CA
14149784 TCTTTGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
1 TCTTTGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
* *
14149849 GCCCAGGGAGATAGAGTTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCTAC
66 GCCCAGGGAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTAC
14149914 CA
131 CA
** *
14149916 TCTTTGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTT
1 TCTTTGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTT
14149964 TGATCTACTT
Statistics
Matches: 170, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 170 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (132 bp):
TCTTTGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
GCCCAGGGAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTAC
CA
Found at i:14149997 original size:44 final size:44
Alignment explanation
Indices: 14149949--14150283 Score: 334
Period size: 44 Copynumber: 7.5 Consensus size: 44
14149939 TTAGGGAGAT
* *
14149949 AAGATCTGTAATCTTTGATCTACTTCACGCCAGTACAAGAAGAC
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACAGGAAGAC
* * * * **
14149993 AAGATCTGCTT-TCTTCGATCTACGTCGCCACCAGTATGGGAAGAC
1 AAGATCTG-TTATCTTTGATCTACTTC-ACGCCAGTACAGGAAGAC
* * *
14150038 GAGATCTGTTAGCTTTGATCTACTTCACGCCAGTACATGAAGAC
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACAGGAAGAC
* * * * **
14150082 AAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGAC
1 AAGATCTGTTATCTTTGATCTACTTC-ACGCCAGTACAGGAAGAC
* *
14150127 AAGATCTGTTATCTTTGATCTACTTCACGCTAGTACATGAAGAC
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACAGGAAGAC
* * * **
14150171 AAGATCTGCTT-TCTTCGATCTACTTCGCCACCAGTATGGGAAGAC
1 AAGATCTG-TTATCTTTGATCTACTTC-ACGCCAGTACAGGAAGAC
* * *
14150216 AAGATATGTTATCTTTGATTTACTTCACGCCAGTACATGAAGAC
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACAGGAAGAC
* *
14150260 AAGATATGCTT-TCTTCGATCTACT
1 AAGATCTG-TTATCTTTGATCTACT
14150284 CCACTACTGC
Statistics
Matches: 232, Mismatches: 51, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
44 126 0.54
45 106 0.46
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (44 bp):
AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACAGGAAGAC
Found at i:14150214 original size:619 final size:619
Alignment explanation
Indices: 14149037--14150582 Score: 2668
Period size: 619 Copynumber: 2.5 Consensus size: 619
14149027 ATCTGCCATT
* * *
14149037 TTCGATCTACTCCAATATTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGC
1 TTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTTCAATCTATTCCACTGCTGC
* *
14149102 CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTATAACCTCAGAGAGGTAAAATCAGCCA
66 CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCTGCCA
* * * * * *
14149167 TCATTGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAATATATTCCACTGTT
131 TCTTTGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
* *
14149232 GCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGT--AATCCAC
196 GCCCAGGGAGATAGAGTTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCCAC
14149295 CATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTGATCTACTTCACGC
261 CATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTGATCTACTTCACGC
* * *
14149360 CAGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGATGAGATC
326 CAGTACAAGAAGACAAGATCTGCTTTCTTCGATCTACGTCGCCACCAGTATGGGAAGACGAGATC
* * *
14149425 TGTTATCTTTGATCTACTTCACGCCAGTCCATGATGACAAGATCTGTTTTCTTCGATCTACTTCG
391 TGTTAGCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCG
* *
14149490 CCACCAGTATGGGAAGACAAGATCTATTATCTTTTATCTACTTCGCGCCAGTACATGAAGACAAG
456 CCACCAGTATGGGAAGACAAGATCTATTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAG
* *
14149555 ATCTACTTTTTCCAATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTATTTTTGATCTAC
521 ATCTACTTTTTCCAATCTACTTCGCCACCAGTATGGGAAGACAAGATATGTTATCTTTGATCTAC
* *
14149620 TTCACGCTAGTACATGAAGACAAGATCTGCTTTC
586 TTCACGCCAGTACATGAAGACAAGATATGCTTTC
14149654 TTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTTCAATCTATTCCACTGCTGC
1 TTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTTCAATCTATTCCACTGCTGC
*
14149719 CCAGGGAGTTAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCTGCCA
66 CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCTGCCA
14149784 TCTTTGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
131 TCTTTGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
*
14149849 GCCCAGGGAGATAGAGTTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCTAC
196 GCCCAGGGAGATAGAGTTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCCAC
*
14149914 CATCTTTGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTGATCTACTTCACGC
261 CATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTGATCTACTTCACGC
14149979 CAGTACAAGAAGACAAGATCTGCTTTCTTCGATCTACGTCGCCACCAGTATGGGAAGACGAGATC
326 CAGTACAAGAAGACAAGATCTGCTTTCTTCGATCTACGTCGCCACCAGTATGGGAAGACGAGATC
14150044 TGTTAGCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCG
391 TGTTAGCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCG
* *
14150109 CCACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCTAGTACATGAAGACAAG
456 CCACCAGTATGGGAAGACAAGATCTATTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAG
* * *
14150174 ATCTGCTTTCTT-CGATCTACTTCGCCACCAGTATGGGAAGACAAGATATGTTATCTTTGATTTA
521 ATCTACTTT-TTCCAATCTACTTCGCCACCAGTATGGGAAGACAAGATATGTTATCTTTGATCTA
14150238 CTTCACGCCAGTACATGAAGACAAGATATGCTTTC
585 CTTCACGCCAGTACATGAAGACAAGATATGCTTTC
* * *
14150273 TTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTT-AATTTATTCCACAGTTG
1 TTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT-TTTCAATCTATTCCACTGCTG
* *
14150337 CCCAGGGAGATAGAATTACTGGCTTTAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCC
65 CCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCTGCC
*
14150402 ATCTTTGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGC
130 ATCTTTGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGC
*
14150467 TGCCCAGGGAGATAGAGTTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCCG
195 TGCCCAGGGAGATAGAGTTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCCA
* *
14150532 CCATCCTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTT
260 CCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTT
14150583 CAATCTATTC
Statistics
Matches: 880, Mismatches: 45, Indels: 6
0.95 0.05 0.01
Matches are distributed among these distances:
617 237 0.27
619 638 0.73
620 5 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (619 bp):
TTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTTCAATCTATTCCACTGCTGC
CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCTGCCA
TCTTTGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
GCCCAGGGAGATAGAGTTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCCAC
CATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTGATCTACTTCACGC
CAGTACAAGAAGACAAGATCTGCTTTCTTCGATCTACGTCGCCACCAGTATGGGAAGACGAGATC
TGTTAGCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCG
CCACCAGTATGGGAAGACAAGATCTATTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAG
ATCTACTTTTTCCAATCTACTTCGCCACCAGTATGGGAAGACAAGATATGTTATCTTTGATCTAC
TTCACGCCAGTACATGAAGACAAGATATGCTTTC
Found at i:14150344 original size:44 final size:44
Alignment explanation
Indices: 14150277--14150480 Score: 159
Period size: 44 Copynumber: 4.6 Consensus size: 44
14150267 GCTTTCTTCG
*
14150277 ATCTACTCCACTA-CTGCCTAGGGAGATAAGATCTGTAATCTTTA
1 ATCTACTCCAC-AGCTGCCCAGGGAGATAAGATCTGTAATCTTTA
* * * * *
14150321 ATTTATTCCACAGTTGCCCAGGGAGAT-AGA-AT-TACTGGCTTTA
1 ATCTACTCCACAGCTGCCCAGGGAGATAAGATCTGTAAT--CTTTA
* * * * * ** *
14150364 ATGTACTCCACTG-TAACCTCAGGGAGGTAAAATCTGCCATCTTTG
1 ATCTACTCCACAGCT-GCC-CAGGGAGATAAGATCTGTAATCTTTA
*
14150409 ATCTACTCCACTA-CTGCCTAGGGAGATAAGATCTGTAATCTTTA
1 ATCTACTCCAC-AGCTGCCCAGGGAGATAAGATCTGTAATCTTTA
* *
14150453 ATCTATTCCACTGCTGCCCAGGGAGATA
1 ATCTACTCCACAGCTGCCCAGGGAGATA
14150481 GAGTTACTGG
Statistics
Matches: 120, Mismatches: 29, Indels: 22
0.70 0.17 0.13
Matches are distributed among these distances:
41 3 0.03
42 2 0.02
43 21 0.17
44 73 0.61
45 18 0.15
46 2 0.02
47 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (44 bp):
ATCTACTCCACAGCTGCCCAGGGAGATAAGATCTGTAATCTTTA
Found at i:14150513 original size:132 final size:132
Alignment explanation
Indices: 14150271--14150775 Score: 780
Period size: 132 Copynumber: 3.8 Consensus size: 132
14150261 AGATATGCTT
* * * *
14150271 TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTTAATTTATTCCACAGTT
1 TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
*
14150336 GCCCAGGGAGATAGAATTACTGGCTTTAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGC
66 GCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGC
14150401 CA
131 CA
* *
14150403 TCTTTGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCT
1 TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
* * *
14150468 GCCCAGGGAGATAGAGTTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCCGC
66 GCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGC
14150533 CA
131 CA
* * *
14150535 TCCTT-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGC
1 T-CTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGC
* * * *
14150599 TACCTAGGGAGATAGAATTACCGGCTTCAATGTACTCCACTGTAACCTCAGGAAGGTAAAAT-TC
65 TGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCT-
* *
14150663 ACCG
129 GCCA
* *
14150667 TCTTCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCTACTGCT
1 TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
*
14150732 GCCCAGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
66 GCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
14150776 ATTACTGGCT
Statistics
Matches: 342, Mismatches: 28, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
131 3 0.01
132 336 0.98
133 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (132 bp):
TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
GCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGC
CA
Found at i:14150640 original size:43 final size:43
Alignment explanation
Indices: 14150580--14150772 Score: 131
Period size: 44 Copynumber: 4.4 Consensus size: 43
14150570 GATCTATAAT
*
14150580 CTTCAATCTATTCCACTGCTACCTAGGGAGATAGAATTACCGG
1 CTTCAATCTACTCCACTGCTACCTAGGGAGATAGAATTACCGG
* * * * *
14150623 CTTCAATGTACTCCACTG-TAACCTCAGGAAGGTAAAATTCACCGT
1 CTTCAATCTACTCCACTGCT-ACCT-AGGGAGATAGAATT-ACCGG
* * * * * **
14150668 CTTCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTA--AT
1 CTTCAATCTACTCCACTGCTACCTAGGGAGAT-AGA-AT-TACCGG
* * * * * *
14150712 CTTCAATCTATTCTACTGCTGCCCAGAGAGATAGAATTACTGG
1 CTTCAATCTACTCCACTGCTACCTAGGGAGATAGAATTACCGG
*
14150755 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
14150773 TAAATTACTG
Statistics
Matches: 112, Mismatches: 29, Indels: 18
0.70 0.18 0.11
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 38 0.34
44 43 0.38
45 23 0.21
46 3 0.03
47 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (43 bp):
CTTCAATCTACTCCACTGCTACCTAGGGAGATAGAATTACCGG
Found at i:14150788 original size:29 final size:29
Alignment explanation
Indices: 14150746--14150804 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
14150736 AGAGAGATAG
14150746 AATTACTGGCTTCAATGTACTCCACTGTA
1 AATTACTGGCTTCAATGTACTCCACTGTA
14150775 AATTACTGGCTTCAATGTACTCCACTGTA
1 AATTACTGGCTTCAATGTACTCCACTGTA
14150804 A
1 A
14150805 CCTCAGGGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.34
Consensus pattern (29 bp):
AATTACTGGCTTCAATGTACTCCACTGTA
Found at i:14150903 original size:44 final size:44
Alignment explanation
Indices: 14150855--14151280 Score: 181
Period size: 44 Copynumber: 9.7 Consensus size: 44
14150845 TTCTACTTAT
*
14150855 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCTAG
1 GGAGATAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCTAG
** * **
14150899 GGAGAT-AGA--AATAATGGCTTCAATGTACTCCACTGTAACCTCAG
1 GGAGATAAGATCTGTAAT--CTTCAATCTACTCCACTGTTGCCT-AG
* * * ** * * **
14150943 AGAGGTAAAATCTGCCATTTTCGATCTACTCCACTACTGCCTAG
1 GGAGATAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCTAG
* * *
14150987 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
1 GGAGATAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCTAG
* * * * **
14151031 GGAGAT-AGA-AT-TACTGGCTTCAATGTACTCCACTATAACCTCAG
1 GGAGATAAGATCTGTAAT--CTTCAATCTACTCCACTGTTGCCT-AG
* * * * ** * * ** *
14151075 AGAGGTAAAATCAGCCATCATT-GATCTGCTCCACTACTGCTTAG
1 GGAGATAAGATCTGTAATC-TTCAATCTACTCCACTGTTGCCTAG
* *
14151119 GGAGATAAGATCTGTAATCTTCAATATATTCCACTGTTGTCC-AG
1 GGAGATAAGATCTGTAATCTTCAATCTACTCCACTGTTG-CCTAG
** * **
14151163 GGAGAT-AGAAT-TGCT-GGCTTCAATGTACTCCACTGTAACCTCAG
1 GGAGATAAG-ATCTG-TAATCTTCAATCTACTCCACTGTTGCCT-AG
* * **** ** * ** *
14151207 GGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAG
1 GGAGATAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCTAG
*
14151251 GGAGATAAGATCTGTAATCTTTAATCTACT
1 GGAGATAAGATCTGTAATCTTCAATCTACT
14151281 TCACGCCAAT
Statistics
Matches: 263, Mismatches: 97, Indels: 44
0.65 0.24 0.11
Matches are distributed among these distances:
41 7 0.03
42 3 0.01
43 66 0.25
44 130 0.49
45 52 0.20
46 2 0.01
47 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (44 bp):
GGAGATAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCTAG
Found at i:14150906 original size:161 final size:161
Alignment explanation
Indices: 14150614--14150936 Score: 511
Period size: 161 Copynumber: 2.0 Consensus size: 161
14150604 AGGGAGATAG
* *
14150614 AATTACCGGCTTCAATGTACTCCACTGTAACCTCAGGAAGGTAAAATTCACCGTCTTCGATCTGC
1 AATTACCGGCTTCAATGTACTCCACTGTAACCTCAGGAAGGTAAAATCCACCATCTTCGATCTGC
* *
14150679 TCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCTACTGCTGCCCAGAGAGAT
66 TCCACTACTACCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGAGAGAT
* *
14150744 AGAATTACTGGCTTCAATGTACTCCACTGTA
131 AGAAATAATGGCTTCAATGTACTCCACTGTA
* * *
14150775 AATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGC
1 AATTACCGGCTTCAATGTACTCCACTGTAACCTCAGGAAGGTAAAATCCACCATCTTCGATCTGC
* * * * * *
14150840 TCCACTTCTACTTATGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCTAGGGAGAT
66 TCCACTACTACCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGAGAGAT
14150905 AGAAATAATGGCTTCAATGTACTCCACTGTA
131 AGAAATAATGGCTTCAATGTACTCCACTGTA
14150936 A
1 A
14150937 CCTCAGAGAG
Statistics
Matches: 147, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
161 147 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (161 bp):
AATTACCGGCTTCAATGTACTCCACTGTAACCTCAGGAAGGTAAAATCCACCATCTTCGATCTGC
TCCACTACTACCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGAGAGAT
AGAAATAATGGCTTCAATGTACTCCACTGTA
Found at i:14150932 original size:43 final size:43
Alignment explanation
Indices: 14150873--14151064 Score: 124
Period size: 43 Copynumber: 4.4 Consensus size: 43
14150863 GATCTGTAAT
* *
14150873 CTTCAATCTATTCCACTGTTGCCTAGGGAGATAGAAATAATGG
1 CTTCAATCTACTCCACTGCTGCCTAGGGAGATAGAAATAATGG
* * * * * *
14150916 CTTCAATGTACTCCACTG-TAACCTCAGAGAGGTA-AAAT-CTGC
1 CTTCAATCTACTCCACTGCT-GCCT-AGGGAGATAGAAATAATGG
* * **
14150958 CATTTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT--
1 C---TTCAATCTACTCCACTGCTGCCTAGGGAGAT-AGA--AATAATGG
* * * *
14151005 CTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGG
1 CTTCAATCTACTCCACTGCTGCCTAGGGAGATAGAAATAATGG
*
14151048 CTTCAATGTACTCCACT
1 CTTCAATCTACTCCACT
14151065 ATAACCTCAG
Statistics
Matches: 111, Mismatches: 25, Indels: 26
0.69 0.15 0.16
Matches are distributed among these distances:
41 3 0.03
42 4 0.04
43 41 0.37
44 40 0.36
45 18 0.16
46 2 0.02
47 1 0.01
48 1 0.01
49 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (43 bp):
CTTCAATCTACTCCACTGCTGCCTAGGGAGATAGAAATAATGG
Found at i:14151011 original size:293 final size:293
Alignment explanation
Indices: 14150484--14151064 Score: 968
Period size: 293 Copynumber: 2.0 Consensus size: 293
14150474 GGAGATAGAG
*
14150484 TTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCCTTGATCTGCTC
1 TTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCCTTGATCTGCTC
*
14150549 CACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCTACCTAGGGAGATAG
66 CACTACTACTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCTACCTAGGGAGATAG
* * * *
14150614 AATTACCGGCTTCAATGTACTCCACTGTAACCTCAGGAAGGTAAAATTCACCGTCTTCGATCTGC
131 AAATAACGGCTTCAATGTACTCCACTGTAACCTCAGGAAGGTAAAATTCACCATCTTCGATCTAC
*
14150679 TCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCTACTGCTGCCCAGAGAGAT
196 TCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGAGAGAT
14150744 AGAATTACTGGCTTCAATGTACTCCACTGTAAA
261 AGAATTACTGGCTTCAATGTACTCCACTGTAAA
* *
14150777 TTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTC
1 TTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCCTTGATCTGCTC
* * * * *
14150842 CACTTCTACTTATGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCTAGGGAGATAG
66 CACTACTACTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCTACCTAGGGAGATAG
* * *
14150907 AAATAATGGCTTCAATGTACTCCACTGTAACCTCA-GAGAGGTAAAA-TCTGCCATTTTCGATCT
131 AAATAACGGCTTCAATGTACTCCACTGTAACCTCAGGA-AGGTAAAATTC-ACCATCTTCGATCT
*
14150970 ACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAG
194 ACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGAGAG
14151035 ATAGAATTACTGGCTTCAATGTACTCCACT
259 ATAGAATTACTGGCTTCAATGTACTCCACT
14151065 ATAACCTCAG
Statistics
Matches: 268, Mismatches: 18, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
292 4 0.01
293 264 0.99
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (293 bp):
TTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCCTTGATCTGCTC
CACTACTACTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCTACCTAGGGAGATAG
AAATAACGGCTTCAATGTACTCCACTGTAACCTCAGGAAGGTAAAATTCACCATCTTCGATCTAC
TCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGAGAGAT
AGAATTACTGGCTTCAATGTACTCCACTGTAAA
Found at i:14151018 original size:132 final size:131
Alignment explanation
Indices: 14150775--14151278 Score: 796
Period size: 132 Copynumber: 3.8 Consensus size: 131
14150765 CTCCACTGTA
*
14150775 AATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGC
1 AATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCCACCATCTTTGATCTGC
* * *
14150840 TCCACTTCTACTTATGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCTAGGGAGAT
66 TCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCC-AGGGAGAT
14150905 AG
130 AG
* * ** *
14150907 AAATAATGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCTGCCAT-TTTCGATCTA
1 AATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCCACCATCTTT-GATCTG
* *
14150971 CTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAGA
65 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTG-CCAGGGAGA
14151036 TAG
129 TAG
* *
14151039 AATTACTGGCTTCAATGTACTCCACTATAACCTCAGAGAGGTAAAAT-CAGCCATCATTGATCTG
1 AATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCCA-CCATCTTTGATCTG
*
14151103 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATATATTCCACTGTTGTCCAGGGAGA
65 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTG-CCAGGGAGA
14151168 TAG
129 TAG
* *
14151171 AATTGCTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGC
1 AATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCCACCATCTTTGATCTGC
*
14151236 TCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAATCTA
66 TCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTA
14151279 CTTCACGCCA
Statistics
Matches: 339, Mismatches: 28, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
131 3 0.01
132 330 0.97
133 6 0.02
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (131 bp):
AATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCCACCATCTTTGATCTGC
TCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCAGGGAGATA
G
Found at i:14151140 original size:425 final size:425
Alignment explanation
Indices: 14150350--14151200 Score: 1341
Period size: 425 Copynumber: 2.0 Consensus size: 425
14150340 AGGGAGATAG
* **
14150350 AATTACTGGCTTTAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTAC
1 AATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTAC
* *
14150415 TCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCTGCCCAGGGAGAT
66 TCCACTACTACCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAGAT
** * *
14150480 AGAGTTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCCTTGATCT
131 AGAAATAATGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCCGCCATCCTTGATCT
* * *
14150545 GCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCTACCTAGGGAG
196 ACTCCACTACTGCCTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCTACCCAGGGAG
* *
14150610 ATAGAATTACCGGCTTCAATGTACTCCACTGTAACCTCAGGAAGGTAAAATTCACCGTCTTCGAT
261 ATAGAATTACCGGCTTCAATGTACTCCACTATAACCTCAGGAAGGTAAAATTCACCATCTTCGAT
* *
14150675 CTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCTACTGCTGCCCAGAG
326 CTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATATATTCCACTGCTGCCCAGAG
14150740 AGATAGAATTACTGGCTTCAATGTACTCCACTGTA
391 AGATAGAATTACTGGCTTCAATGTACTCCACTGTA
*
14150775 AATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGC
1 AATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTAC
* * * * *
14150840 TCCACTTCTACTTATGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCTAGGGAGAT
66 TCCACTACTACCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAGAT
* * *
14150905 AGAAATAATGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCTGCCAT-TTTCGATC
131 AGAAATAATGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCCGCCATCCTT-GATC
* *
14150969 TACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGA
195 TACTCCACTACTGCCTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCTACCCAGGGA
*
14151034 GATAGAATTACTGGCTTCAATGTACTCCACTATAACCTCA-GAGAGGTAAAA-TCAGCCATCATT
260 GATAGAATTACCGGCTTCAATGTACTCCACTATAACCTCAGGA-AGGTAAAATTCA-CCATC-TT
* * *
14151097 -GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATATATTCCACTGTTGTCC
322 CGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATATATTCCACTGCTGCCC
* *
14151161 AGGGAGATAGAATTGCTGGCTTCAATGTACTCCACTGTA
387 AGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
14151200 A
1 A
14151201 CCTCAGGGAG
Statistics
Matches: 389, Mismatches: 33, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
424 7 0.02
425 380 0.98
426 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (425 bp):
AATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTAC
TCCACTACTACCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAGAT
AGAAATAATGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCCGCCATCCTTGATCT
ACTCCACTACTGCCTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCTACCCAGGGAG
ATAGAATTACCGGCTTCAATGTACTCCACTATAACCTCAGGAAGGTAAAATTCACCATCTTCGAT
CTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATATATTCCACTGCTGCCCAGAG
AGATAGAATTACTGGCTTCAATGTACTCCACTGTA
Found at i:14151306 original size:44 final size:44
Alignment explanation
Indices: 14151257--14151591 Score: 291
Period size: 44 Copynumber: 7.5 Consensus size: 44
14151247 TTAGGGAGAT
* * *
14151257 AAGATCTGTAATCTTTAATCTACTTCACGCCAATACATGAAGAC
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGAC
* * * *** *
14151301 AAGATCTGCTT-TCTTCGATCTACTTCGCCACCAGTATGGGAAGAT
1 AAGATCTG-TTATCTTTGATCTACTTC-ACGCCAGTACATGAAGAC
* *
14151346 GAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGATGAC
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGAC
* * * * ***
14151390 AAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGAC
1 AAGATCTGTTATCTTTGATCTACTTC-ACGCCAGTACATGAAGAC
** *
14151435 AAGATCCATTATCTTTTATCTACTTCACGCCAGTACATGAAGAC
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGAC
** * * ***
14151479 AAGATCTGCTT-T-TTCCAATCTACTTCGCCACCAGTATGGGAAGAC
1 AAGATCTG-TTATCTT-TGATCTACTTC-ACGCCAGTACATGAAGAC
* *
14151524 AAGATCTGTTATTTTTGATCTACTTCACGCTAGTACATGAAGAC
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGAC
*
14151568 AAGATCTGCTT-TCTTCGATCTACT
1 AAGATCTG-TTATCTTTGATCTACT
14151592 CCACTACTGC
Statistics
Matches: 224, Mismatches: 57, Indels: 20
0.74 0.19 0.07
Matches are distributed among these distances:
43 2 0.01
44 119 0.53
45 101 0.45
46 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.33
Consensus pattern (44 bp):
AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGAC
Found at i:14151409 original size:89 final size:89
Alignment explanation
Indices: 14151257--14152121 Score: 550
Period size: 89 Copynumber: 9.8 Consensus size: 89
14151247 TTAGGGAGAT
* * *
14151257 AAGATCTGTAATCTTTAATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCT
*
14151322 ACTTCGCCACCAGTATGGGAAGAT
66 ACTTCGCCACCAGTATGGGAAGAC
* * *
14151346 GAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGATGACAAGATCTGTTTTCTTCGATCT
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCT
14151411 ACTTCGCCACCAGTATGGGAAGAC
66 ACTTCGCCACCAGTATGGGAAGAC
** * *
14151435 AAGATCCATTATCTTTTATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTT-TTCCAATC
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTT-CGATC
14151499 TACTTCGCCACCAGTATGGGAAGAC
65 TACTTCGCCACCAGTATGGGAAGAC
* *
14151524 AAGATCTGTTATTTTTGATCTACTTCACGCTAGTACATGAAGACAAGATCTGCTTTCTTCGATCT
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCT
* * * * *
14151589 ACTCCACTACTGC-CTA-GGG-AGAT
66 ACTTCGCCAC--CAGTATGGGAAGAC
* * * * * * * * * **
14151612 GAGATCTGTAAT-TTTCAATCTA-TTCCACTG-CTG-CCTAGGGAGA-TAGAAT-TACTGGCTTC
1 AAGATCTGTTATCTTT-GATCTACTT-CAC-GCCAGTAC-ATGAAGACAAG-ATCTGCTTTCTTC
* * * *
14151671 AATGTAC-T--CCA-CTGTAACCTCAGGGAGGTA-
61 GATCTACTTCGCCACCAGT-A--T--GGGAAG-AC
* ** * * ** * * * * * * *
14151701 AA-ATCCGCCATCTTCGATCTACTCCACTACTG-CCTAGGGAGATAAGATCTG-TAATCTTCAAT
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTAC-ATGAAGACAAGATCTGCT-TTCTTCGAT
*
14151763 CTA-TT--CCACTGCTGCCTA-GGG-AGA-
64 CTACTTCGCCAC--CAG--TATGGGAAGAC
* ** * * ** * * * ** * * ** *
14151787 TAGA---GTTACTGGCTTCAATGTACTCCACTGTAACCT-CAGGGAGGTAAAATCTACCATCTTT
1 AAGATCTGTTA-T--CTTTGATCTACTTCAC-GCCA-GTACATGAAGACAAGATCTGCTTTCTTC
** * * * * *
14151848 GATCCGCTCCACTA-CTGCT-TAGGG-AGAT
61 GATCTACTTCGCCACCAG-TAT-GGGAAGAC
* *
14151876 AAGATCTGTAATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGATTTCTTCGATCT
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCT
*
14151941 ACGTCGCCACCAGTATGGGAAGAC
66 ACTTCGCCACCAGTATGGGAAGAC
* * *
14151965 GAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTTGATCT
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCT
14152030 ACTTCGCCACCAGTATGGGAAGAC
66 ACTTCGCCACCAGTATGGGAAGAC
* *
14152054 AAGATCTGTTATCTTTAATCTACTTCACACCAGTACATGAAGACAAGATCTGCTTTCTTCGATCT
1 AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCT
14152119 ACT
66 ACT
14152122 CCATTACTGC
Statistics
Matches: 611, Mismatches: 114, Indels: 102
0.74 0.14 0.12
Matches are distributed among these distances:
81 1 0.00
82 1 0.00
83 1 0.00
84 4 0.01
85 1 0.00
86 2 0.00
87 39 0.06
88 126 0.21
89 419 0.69
90 5 0.01
91 4 0.01
92 6 0.01
93 1 0.00
94 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (89 bp):
AAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCT
ACTTCGCCACCAGTATGGGAAGAC
Found at i:14151617 original size:44 final size:44
Alignment explanation
Indices: 14151568--14151883 Score: 198
Period size: 44 Copynumber: 7.2 Consensus size: 44
14151558 ACATGAAGAC
* *
14151568 AAGATCTGCTTTCTTCGATCTACTCCACTACTGCCTAGGGAGAT
1 AAGATCTGCTATCTTCAATCTACTCCACTACTGCCTAGGGAGAT
* * * *
14151612 GAGATCTG-TAATTTTCAATCTATTCCACTGCTGCCTAGGGAGAT
1 AAGATCTGCT-ATCTTCAATCTACTCCACTACTGCCTAGGGAGAT
* ** * * * *
14151656 -AGAAT-TACTGGCTTCAATGTACTCCACT-GTAACCTCAGGGAGGT
1 AAG-ATCTGCTATCTTCAATCTACTCCACTACT-GCCT-AGGGAGAT
* * * *
14151700 AAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGAT
1 AAGATCTGCTATCTTCAATCTACTCCACTACTGCCTAGGGAGAT
* *
14151744 AAGATCTG-TAATCTTCAATCTATTCCACTGCTGCCTAGGGAGAT
1 AAGATCTGCT-ATCTTCAATCTACTCCACTACTGCCTAGGGAGAT
* ** * * * *
14151788 -AGAGT-TACTGGCTTCAATGTACTCCACT-GTAACCTCAGGGAGGT
1 AAGA-TCTGCTATCTTCAATCTACTCCACTACT-GCCT-AGGGAGAT
* * * ** ** *
14151832 AAAATCTACCATCTTTGATCCGCTCCACTACTGCTTAGGGAGAT
1 AAGATCTGCTATCTTCAATCTACTCCACTACTGCCTAGGGAGAT
14151876 AAGATCTG
1 AAGATCTG
14151884 TAATCTTTGA
Statistics
Matches: 201, Mismatches: 55, Indels: 32
0.70 0.19 0.11
Matches are distributed among these distances:
42 2 0.01
43 43 0.21
44 115 0.57
45 39 0.19
46 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (44 bp):
AAGATCTGCTATCTTCAATCTACTCCACTACTGCCTAGGGAGAT
Found at i:14151741 original size:132 final size:132
Alignment explanation
Indices: 14151579--14152501 Score: 828
Period size: 132 Copynumber: 7.0 Consensus size: 132
14151569 AGATCTGCTT
* *
14151579 TCTTCGATCTACTCCACTACTGCCTAGGGAGATGAGATCTGTAATTTTCAATCTATTCCACTGCT
1 TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
*
14151644 GCCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGC
66 GCCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGC
14151709 CA
131 CA
14151711 TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
1 TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
* *
14151776 GCCTAGGGAGATAGAGTTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTAC
66 GCCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGC
14151841 CA
131 CA
* ** * **
14151843 TCTTTGATCCGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTGATCTACTT-CAC-GC
1 TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTA-TTCCACTG-
* * * * * ** * * * *
14151906 CAGTAC-ATGAAGACA-AGATCTGA-TTTCTTCGATCTACGTCGCCACCAGT-A--T--GGGAAG
64 CTG-CCTAGGGAGATAGA-AT-T-ACTGGCTTCAATGTAC-T--CCA-CTGTAACCTCAGGGAGG
* **
14151963 -ACGAGATCTGTTA
121 TA--AAATCTGCCA
* * ** * * * * * ** **
14151976 TCTTTGATCTACTTCACGCCAGTAC-ATGAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCAC
1 TCTTCGATCTACTCCACTACTG-CCTAGGGAGATAAGATCTGTAATCTTCAATCTA-TT--CCAC
* * ** ** * * * * *
14152040 --CAG--TATGGGAAGACA-AGATCTGTTATCTTTAATCTACTTCAC----ACCAGTACATGAAG
62 TGCTGCCTA-GGG-AGATAGA-AT-TACTGGCTTCAATGTACTCCACTGTAACC--T-CAGGGAG
** * **
14152096 ACAAGATCTGCTT
120 GTAAAATCTGCCA
* * *
14152109 TCTTCGATCTACTCCATTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATTTATTCCACTGTT
1 TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
*
14152174 GCCTAGGGAGATAGAATTACTGGCTTTAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGC
66 GCCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGC
14152239 CA
131 CA
* * * *
14152241 TCTTTGATCTACTCTACTATTGCCTAGGGAGATAAGATTTGTAATCTTCAATCTATTCCACTGCT
1 TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
* * *
14152306 GCCTAGGGAGATAGAGTTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGT
66 GCCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGC
14152371 CA
131 CA
* * *
14152373 TCCTT-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGC
1 T-CTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGC
* * * *
14152437 TACCCAGGGAGATAGAATTAATGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAGATCTG
65 TGCCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTG
14152502 TTATTTTCAC
Statistics
Matches: 645, Mismatches: 107, Indels: 78
0.78 0.13 0.09
Matches are distributed among these distances:
127 1 0.00
130 5 0.01
131 22 0.03
132 451 0.70
133 120 0.19
134 32 0.05
135 4 0.01
136 7 0.01
137 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (132 bp):
TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
GCCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGC
CA
Found at i:14151924 original size:44 final size:44
Alignment explanation
Indices: 14151876--14152121 Score: 289
Period size: 44 Copynumber: 5.5 Consensus size: 44
14151866 TTAGGGAGAT
* *
14151876 AAGATCTGTAATCTTTGATCTACTTCACGCCAGTACATGAAGAC
1 AAGATCTGTTATCTTTGATCTACTTCACACCAGTACATGAAGAC
* * * ***
14151920 AAGATCTGATT-TCTTCGATCTACGTCGCCACCAGTATGGGAAGAC
1 AAGATCTG-TTATCTTTGATCTACTTC-ACACCAGTACATGAAGAC
* *
14151965 GAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGAC
1 AAGATCTGTTATCTTTGATCTACTTCACACCAGTACATGAAGAC
* * ***
14152009 AAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGGGAAGAC
1 AAGATCTGTTATCTTTGATCTACTTC-ACACCAGTACATGAAGAC
*
14152054 AAGATCTGTTATCTTTAATCTACTTCACACCAGTACATGAAGAC
1 AAGATCTGTTATCTTTGATCTACTTCACACCAGTACATGAAGAC
*
14152098 AAGATCTGCTT-TCTTCGATCTACT
1 AAGATCTG-TTATCTTTGATCTACT
14152122 CCATTACTGC
Statistics
Matches: 166, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
44 93 0.56
45 73 0.44
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (44 bp):
AAGATCTGTTATCTTTGATCTACTTCACACCAGTACATGAAGAC
Found at i:14152001 original size:530 final size:530
Alignment explanation
Indices: 14151342--14152420 Score: 1845
Period size: 530 Copynumber: 2.0 Consensus size: 530
14151332 CAGTATGGGA
* * * *
14151342 AGATGAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGATGACAAGATCTGTTTTCTTCG
1 AGATAAGATCTGTAATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGATTTCTTCG
* *
14151407 ATCTACTTCGCCACCAGTATGGGAAGACAAGATCCATTATCTTTTATCTACTTCACGCCAGTACA
66 ATCTACGTCGCCACCAGTATGGGAAGACAAGATCCATTATCTTTGATCTACTTCACGCCAGTACA
14151472 TGAAGACAAGATCTGCTTTT-TCCAATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTAT
131 TGAAGACAAGATCTG-TTTTCTCCAATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTAT
* * * *
14151536 TTTTGATCTACTTCACGCTAGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACTACTG
195 CTTTAATCTACTTCACACCAGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACTACTG
* *
14151601 CCTAGGGAGATGAGATCTGTAATTTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTACTG
260 CCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTACTG
14151666 GCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTAC
325 GCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTAC
14151731 TGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAGTTAC
390 TGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAGTTAC
* *
14151796 TGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTACCATCTTTGATCCGCTCCACT
455 TGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCCTTGATCCGCTCCACT
14151861 ACTGCTTAGGG
520 ACTGCTTAGGG
14151872 AGATAAGATCTGTAATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGATTTCTTCG
1 AGATAAGATCTGTAATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGATTTCTTCG
* **
14151937 ATCTACGTCGCCACCAGTATGGGAAGACGAGATCTGTTATCTTTGATCTACTTCACGCCAGTACA
66 ATCTACGTCGCCACCAGTATGGGAAGACAAGATCCATTATCTTTGATCTACTTCACGCCAGTACA
***
14152002 TGAAGACAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTATC
131 TGAAGACAAGATCTGTTTTCTCCAATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTATC
*
14152067 TTTAATCTACTTCACACCAGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCATTACTGC
196 TTTAATCTACTTCACACCAGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACTACTGC
* *
14152132 CTAGGGAGATAAGATCTGTAATCTTCAATTTATTCCACTGTTGCCTAGGGAGATAGAATTACTGG
261 CTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTACTGG
* * * * *
14152197 CTTTAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTTGATCTACTCTACTATT
326 CTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACT
*
14152262 GCCTAGGGAGATAAGATTTGTAATCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAGTTACT
391 GCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAGTTACT
** *
14152327 GGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGTCATCCTTGATCTGCTCCACTA
456 GGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCCTTGATCCGCTCCACTA
14152392 CTGCTTAGGG
521 CTGCTTAGGG
*
14152402 AGATAAGATCTATAATCTT
1 AGATAAGATCTGTAATCTT
14152421 CAATCTATTC
Statistics
Matches: 515, Mismatches: 33, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
529 4 0.01
530 511 0.99
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (530 bp):
AGATAAGATCTGTAATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGATTTCTTCG
ATCTACGTCGCCACCAGTATGGGAAGACAAGATCCATTATCTTTGATCTACTTCACGCCAGTACA
TGAAGACAAGATCTGTTTTCTCCAATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTTATC
TTTAATCTACTTCACACCAGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACTACTGC
CTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTACTGG
CTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACT
GCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAGTTACT
GGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCCTTGATCCGCTCCACTA
CTGCTTAGGG
Found at i:14152157 original size:44 final size:44
Alignment explanation
Indices: 14152109--14152450 Score: 180
Period size: 44 Copynumber: 7.8 Consensus size: 44
14152099 AGATCTGCTT
* *
14152109 TCTTCGATCTACTCCATTACTGCCTAGGGAGATAAGATCTGTAA
1 TCTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAA
* * ** * *
14152153 TCTTCAATTTATTCCACTGTTGCCTAGGGAGAT-AGA-AT-TAC
1 TCTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAA
* * * * * * **
14152194 TGGCTTTAATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCTGCCA
1 T--CTTCAATCTACTCCACTACT-GCCT-AGGGAGATAAGATCTGTAA
** * * *
14152241 TCTTTGATCTACTCTACTATTGCCTAGGGAGATAAGATTTGTAA
1 TCTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAA
* * *
14152285 TCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAGTTACTG---
1 TCTTCAATCTACTCCACTACTGCCTAGGGAGATA-AGAT-CTGTAA
* * * * * * * *
14152328 GCTTCAATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCCGTCA
1 TCTTCAATCTACTCCACTACT-GCCT-AGGGAGATAAGATCTGTAA
* * * *
14152373 TCCTT-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAA
1 T-CTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAA
* * * *
14152417 TCTTCAATCTATTCCACTGCTACCCAGGGAGATA
1 TCTTCAATCTACTCCACTACTGCCTAGGGAGATA
14152451 GAATTAATGG
Statistics
Matches: 215, Mismatches: 65, Indels: 36
0.68 0.21 0.11
Matches are distributed among these distances:
41 3 0.01
42 5 0.02
43 43 0.20
44 121 0.56
45 34 0.16
46 8 0.04
47 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (44 bp):
TCTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAA
Found at i:14152489 original size:44 final size:42
Alignment explanation
Indices: 14152150--14152491 Score: 121
Period size: 44 Copynumber: 7.8 Consensus size: 42
14152140 ATAAGATCTG
* * *
14152150 TAATCTTCAATTTATTCCACTGTTGCCT-AGGGAGATAGAAT-
1 TAATCTTCAATCTACTCCACTG-TACCTCAGGGAGATAGAATC
* * * * *
14152191 TACTGGCTTTAATGTACTCCACTGTAACCTCAGGGAGGTAAAATC
1 TAAT--CTTCAATCTACTCCACTGT-ACCTCAGGGAGATAGAATC
* ** * * * * *
14152236 TGCCATCTTTGATCTACTCTACTATTGCCT-AGGGAGATAAGATTTG
1 T--AATCTTCAATCTACTCCACT-GTACCTCAGGGAGAT-AGA-ATC
* * *
14152282 TAATCTTCAATCTATTCCACTGCTGCCT-AGGGAGATAGAGT-
1 TAATCTTCAATCTACTCCACTG-TACCTCAGGGAGATAGAATC
* * * *
14152323 TACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
1 TAAT--CTTCAATCTACTCCACTGT-ACCTCAGGGAGATAGAAT-C
* * * *
14152369 GTCATCCTT-GATCTGCTCCAC--TACTGCTTAGGGAGATA-AGATC
1 -TAAT-CTTCAATCTACTCCACTGTAC--CTCAGGGAGATAGA-ATC
*
14152412 TATAATCTTCAATCTATTCCACTGCTACC-CAGGGAGATAGAAT-
1 --TAATCTTCAATCTACTCCACTG-TACCTCAGGGAGATAGAATC
*
14152455 TAATGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
1 TAAT--CTTCAATCTACTCCACTGT-ACCTCAGGGAG
14152492 GTAAGATCTG
Statistics
Matches: 222, Mismatches: 48, Indels: 59
0.67 0.15 0.18
Matches are distributed among these distances:
41 10 0.05
42 6 0.03
43 65 0.29
44 98 0.44
45 31 0.14
46 6 0.03
47 6 0.03
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (42 bp):
TAATCTTCAATCTACTCCACTGTACCTCAGGGAGATAGAATC
Found at i:14153676 original size:28 final size:27
Alignment explanation
Indices: 14153634--14153687 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
14153624 AGCCTCTCCA
14153634 TTTTACTTTTCCATTTTTCAATTTTCG
1 TTTTACTTTTCCATTTTTCAATTTTCG
* *
14153661 TTTTAACTTTTTCATTTTTCATTTTTC
1 TTTT-ACTTTTCCATTTTTCAATTTTC
14153688 ATCTCGTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 4 0.17
28 20 0.83
ACGTcount: A:0.15, C:0.17, G:0.02, T:0.67
Consensus pattern (27 bp):
TTTTACTTTTCCATTTTTCAATTTTCG
Found at i:14154614 original size:18 final size:18
Alignment explanation
Indices: 14154591--14154630 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
14154581 TGGTTTGGCA
14154591 GAAAAAATCCAAAAGAAT
1 GAAAAAATCCAAAAGAAT
**
14154609 GAAAAAATCGTAAAGAAT
1 GAAAAAATCCAAAAGAAT
14154627 GAAA
1 GAAA
14154631 GAACACTTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.65, C:0.07, G:0.15, T:0.12
Consensus pattern (18 bp):
GAAAAAATCCAAAAGAAT
Found at i:14156542 original size:19 final size:19
Alignment explanation
Indices: 14156518--14156560 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
14156508 AACTGTGTTT
* *
14156518 AATGCATATG-ATGTAATGA
1 AATGCAAATGCATGAAAT-A
14156537 AATGCAAATGCATGAAATA
1 AATGCAAATGCATGAAATA
14156556 AATGC
1 AATGC
14156561 GAAAAGAGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.26
Consensus pattern (19 bp):
AATGCAAATGCATGAAATA
Found at i:14158732 original size:34 final size:36
Alignment explanation
Indices: 14158663--14158743 Score: 105
Period size: 36 Copynumber: 2.3 Consensus size: 36
14158653 CGTATGTACA
14158663 AATATAAAAATAATAATAATAATGATGGTAATAAAT
1 AATATAAAAATAATAATAATAATGATGGTAATAAAT
*
14158699 AATATAACAATAATAAT-A-AATGATGG-AAGTAAAT
1 AATATAAAAATAATAATAATAATGATGGTAA-TAAAT
*
14158733 AAATTTAAAAA
1 -AATATAAAAA
14158744 AAAAACAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
33 2 0.05
34 13 0.32
35 9 0.22
36 16 0.40
ACGTcount: A:0.62, C:0.01, G:0.09, T:0.28
Consensus pattern (36 bp):
AATATAAAAATAATAATAATAATGATGGTAATAAAT
Found at i:14159847 original size:13 final size:13
Alignment explanation
Indices: 14159831--14159863 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
14159821 CTGTTATTTG
14159831 TATTTGTTTTTAT
1 TATTTGTTTTTAT
14159844 TATTTAG-TTTTAT
1 TATTT-GTTTTTAT
14159857 TATTTGT
1 TATTTGT
14159864 ATATGGGCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.06
13 16 0.89
14 1 0.06
ACGTcount: A:0.18, C:0.00, G:0.09, T:0.73
Consensus pattern (13 bp):
TATTTGTTTTTAT
Found at i:14161196 original size:2 final size:2
Alignment explanation
Indices: 14161189--14161216 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14161179 CTTTTAATTC
14161189 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14161217 TCCATTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14169521 original size:42 final size:42
Alignment explanation
Indices: 14169476--14169616 Score: 192
Period size: 42 Copynumber: 3.4 Consensus size: 42
14169466 AACTAAATGG
* * ** *
14169476 AAACCCATAAGGGTTGAACGGAAGCTTGTAAGAGCTGAACGG
1 AAACCCATAAGGGTTAAACTGAAGCTTAAAAGAGCTGAACGA
*
14169518 AAACCCATAAAGGTTAAACTGAAGCTTAAAAGAGCTGAACGA
1 AAACCCATAAGGGTTAAACTGAAGCTTAAAAGAGCTGAACGA
* * *
14169560 AAACCCGTAAGGGTTAAACTAAAGCTTAAAAGAGCTGAACAA
1 AAACCCATAAGGGTTAAACTGAAGCTTAAAAGAGCTGAACGA
*
14169602 AAACCCATTAGGGTT
1 AAACCCATAAGGGTT
14169617 GAACAGAAAC
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 87 1.00
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.18
Consensus pattern (42 bp):
AAACCCATAAGGGTTAAACTGAAGCTTAAAAGAGCTGAACGA
Found at i:14169743 original size:24 final size:24
Alignment explanation
Indices: 14169716--14169763 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
14169706 TACTTGGGTA
*
14169716 ATTTACCGTCAATTCATCCTTTGC
1 ATTTACCGTCAATTCATCATTTGC
*
14169740 ATTTATCGTCAATTCATCATTTGC
1 ATTTACCGTCAATTCATCATTTGC
14169764 CACAGAATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.23, C:0.25, G:0.08, T:0.44
Consensus pattern (24 bp):
ATTTACCGTCAATTCATCATTTGC
Found at i:14170333 original size:4 final size:4
Alignment explanation
Indices: 14170321--14170354 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
14170311 TAAAATTAGT
14170321 TAAA T-AA TAAA TAAA TAAA TAAA TAAA T-AA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
14170355 AAGGATAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 6 0.21
4 22 0.79
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:14170343 original size:12 final size:11
Alignment explanation
Indices: 14170321--14170354 Score: 59
Period size: 11 Copynumber: 3.0 Consensus size: 11
14170311 TAAAATTAGT
14170321 TAAATAATAAA
1 TAAATAATAAA
14170332 TAAATAAATAAA
1 TAAAT-AATAAA
14170344 TAAATAATAAA
1 TAAATAATAAA
14170355 AAGGATAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (11 bp):
TAAATAATAAA
Found at i:14170751 original size:31 final size:31
Alignment explanation
Indices: 14170658--14170753 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
14170648 GGCAAATTAC
*
14170658 AAGAGTAATTGAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
14170689 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
14170721 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
14170752 AA
1 AA
14170754 ATTATCTAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:14174154 original size:18 final size:18
Alignment explanation
Indices: 14174131--14174167 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
14174121 ACCCATATTG
14174131 TATGTTATTATGCGAACC
1 TATGTTATTATGCGAACC
* *
14174149 TATGTTGTTGTGCGAACC
1 TATGTTATTATGCGAACC
14174167 T
1 T
14174168 TAATATTAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.41
Consensus pattern (18 bp):
TATGTTATTATGCGAACC
Found at i:14182233 original size:65 final size:65
Alignment explanation
Indices: 14182124--14182260 Score: 265
Period size: 65 Copynumber: 2.1 Consensus size: 65
14182114 ATTAAGTAAT
14182124 TTGACATGGCCTTAAATATAATTTAGCCATAAATTAAATGTTAGTGGATGAGGTTGATCATTTCC
1 TTGA-ATGGCCTTAAATATAATTTAGCCATAAATTAAATGTTAGTGGATGAGGTTGATCATTTCC
14182189 A
65 A
14182190 TTGAATGGCCTTAAATATAATTTAGCCATAAATTAAATGTTAGTGGATGAGGTTGATCATTTCCA
1 TTGAATGGCCTTAAATATAATTTAGCCATAAATTAAATGTTAGTGGATGAGGTTGATCATTTCCA
14182255 TTGAAT
1 TTGAAT
14182261 TCCACTTGGT
Statistics
Matches: 71, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
65 67 0.94
66 4 0.06
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (65 bp):
TTGAATGGCCTTAAATATAATTTAGCCATAAATTAAATGTTAGTGGATGAGGTTGATCATTTCCA
Found at i:14185573 original size:19 final size:20
Alignment explanation
Indices: 14185549--14185588 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
14185539 TTCTTTTATT
14185549 TTTAATTT-TTGTTTA-TTTG
1 TTTAATTTCTT-TTTAGTTTG
14185568 TTTAATTTCTTTTTAGTTTG
1 TTTAATTTCTTTTTAGTTTG
14185588 T
1 T
14185589 AGGTTGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.15, C:0.03, G:0.10, T:0.72
Consensus pattern (20 bp):
TTTAATTTCTTTTTAGTTTG
Found at i:14197258 original size:30 final size:30
Alignment explanation
Indices: 14197224--14197286 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
14197214 ACTTATTTTA
*
14197224 TTGTTAATTTTGTTATTATTTTAAAGGTAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
*
14197254 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
14197284 TTG
1 TTG
14197287 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.24, C:0.02, G:0.16, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:14198085 original size:16 final size:18
Alignment explanation
Indices: 14198066--14198098 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
14198056 TCAATATTAT
14198066 TAAAATA-AA-ATAATAG
1 TAAAATATAATATAATAG
14198082 TAAAATATAATATAATA
1 TAAAATATAATATAATA
14198099 ATGAAAACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 2 0.13
18 6 0.40
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (18 bp):
TAAAATATAATATAATAG
Found at i:14201049 original size:46 final size:46
Alignment explanation
Indices: 14200926--14201050 Score: 128
Period size: 46 Copynumber: 2.7 Consensus size: 46
14200916 CAGGGCTTAA
* * * *
14200926 TATTCTTGTATTCTTGAGTTCGCAACATATGCAAGAGCTCGGAACC
1 TATTCTTGTACTCTCGAGTTCACAACATATGCAAGAGCTCAGAACC
** ** *
14200972 TAAACTT-TCACTCTCGA-TTCCACAATTTATGCAAGATCTCAGAACC
1 TATTCTTGT-ACTCTCGAGTT-CACAACATATGCAAGAGCTCAGAACC
*
14201018 TATTCTTGTACTCTCGAGTTTACAACATATGCA
1 TATTCTTGTACTCTCGAGTTCACAACATATGCA
14201051 GGAACTCGAA
Statistics
Matches: 61, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
45 3 0.05
46 55 0.90
47 3 0.05
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.34
Consensus pattern (46 bp):
TATTCTTGTACTCTCGAGTTCACAACATATGCAAGAGCTCAGAACC
Found at i:14201979 original size:13 final size:13
Alignment explanation
Indices: 14201961--14201985 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14201951 TGGTATATTT
14201961 TCCCTTGAGAATA
1 TCCCTTGAGAATA
14201974 TCCCTTGAGAAT
1 TCCCTTGAGAAT
14201986 CTTTAATGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (13 bp):
TCCCTTGAGAATA
Found at i:14202859 original size:115 final size:115
Alignment explanation
Indices: 14202714--14202946 Score: 349
Period size: 115 Copynumber: 2.0 Consensus size: 115
14202704 CTAATTTACC
* * * ** *
14202714 ATTTTTTGAGTAGATGGGGCAAAATCCAATCCATTTCCTTCTACAAGGGTCTCTATGGTACTTTT
1 ATTTTTTGAATAGATGAGACAAAATCCAATCCAACTCCTTCTACAAGGGTCTCCATGGTACTTTT
* * *
14202779 ACCATCTTCATACATACATAAAATGGAAGGAAGAATGATGGACTTTGAAT
66 ACCACCTTCATACACACATAAAATGGAAGGAAGAAGGATGGACTTTGAAT
* *
14202829 ATTTTTTGAATAGATGAGACAAAATGCAATCCAACTCCTTGTACAAGGGTCTCCATGGTACTTTT
1 ATTTTTTGAATAGATGAGACAAAATCCAATCCAACTCCTTCTACAAGGGTCTCCATGGTACTTTT
* *
14202894 ACCGCCTTCATACACGCATAAAATGGAAGGAAGAAGGATGGACTTTGAAT
66 ACCACCTTCATACACACATAAAATGGAAGGAAGAAGGATGGACTTTGAAT
14202944 ATT
1 ATT
14202947 GAATTTACTT
Statistics
Matches: 105, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
115 105 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (115 bp):
ATTTTTTGAATAGATGAGACAAAATCCAATCCAACTCCTTCTACAAGGGTCTCCATGGTACTTTT
ACCACCTTCATACACACATAAAATGGAAGGAAGAAGGATGGACTTTGAAT
Found at i:14204111 original size:29 final size:31
Alignment explanation
Indices: 14204045--14204116 Score: 71
Period size: 29 Copynumber: 2.5 Consensus size: 31
14204035 ATTAATAGAA
* *
14204045 AAAATCATATTTAAAAAAAAAGAATCACTTT
1 AAAATTATAATTAAAAAAAAAGAATCACTTT
* *
14204076 -AAA-TATAATTAAAAAATAA-AAT-ATTTT
1 AAAATTATAATTAAAAAAAAAGAATCACTTT
*
14204103 AAAATTATAGTTAA
1 AAAATTATAATTAA
14204117 CATCTATCCT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
27 4 0.12
28 6 0.18
29 21 0.62
30 3 0.09
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.33
Consensus pattern (31 bp):
AAAATTATAATTAAAAAAAAAGAATCACTTT
Found at i:14205568 original size:15 final size:15
Alignment explanation
Indices: 14205545--14205574 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14205535 TTATGCATGA
14205545 TATTACTGTATCTGT
1 TATTACTGTATCTGT
*
14205560 TATTTCTGTATCTGT
1 TATTACTGTATCTGT
14205575 GACTGGGGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.13, G:0.13, T:0.57
Consensus pattern (15 bp):
TATTACTGTATCTGT
Found at i:14206879 original size:20 final size:20
Alignment explanation
Indices: 14206856--14206894 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14206846 CAAATACTAT
14206856 AAAAAATAGAAAAATTAAAG
1 AAAAAATAGAAAAATTAAAG
** *
14206876 AAAAGTTATAAAAATTAAA
1 AAAAAATAGAAAAATTAAA
14206895 AATTATTGCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.21
Consensus pattern (20 bp):
AAAAAATAGAAAAATTAAAG
Found at i:14207131 original size:21 final size:19
Alignment explanation
Indices: 14207107--14207149 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
14207097 TTCATGTCCC
14207107 TATTTTACAATTTTTAAAACA
1 TATTTT-CAA-TTTTAAAACA
* *
14207128 TATTTTTAATTTTAAAATA
1 TATTTTCAATTTTAAAACA
14207147 TAT
1 TAT
14207150 AAAATAAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 12 0.60
20 2 0.10
21 6 0.30
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (19 bp):
TATTTTCAATTTTAAAACA
Found at i:14207215 original size:41 final size:41
Alignment explanation
Indices: 14207159--14207241 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
14207149 TAAAATAAAC
* * *
14207159 TTAGTTTCTAGATATTTTTAATTATTGAATACTGAATTGGA
1 TTAGTTTCTAAATATTTTAAATTATTGAATACTAAATTGGA
*
14207200 TTAGTTTCTAAATATTTTAAATTATTGAATAGTAAATTGGA
1 TTAGTTTCTAAATATTTTAAATTATTGAATACTAAATTGGA
14207241 T
1 T
14207242 CGGTCCATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.48
Consensus pattern (41 bp):
TTAGTTTCTAAATATTTTAAATTATTGAATACTAAATTGGA
Found at i:14207528 original size:23 final size:23
Alignment explanation
Indices: 14207501--14207548 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
14207491 TTTCAATAAA
*
14207501 TTTTCTATAAAAAA-TTATAATAT
1 TTTTCTA-AAAAAATTTATAACAT
14207524 TTTTCTAAAAAAATTTATAACAT
1 TTTTCTAAAAAAATTTATAACAT
14207547 TT
1 TT
14207549 AAAATATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (23 bp):
TTTTCTAAAAAAATTTATAACAT
Found at i:14220668 original size:50 final size:50
Alignment explanation
Indices: 14220592--14221071 Score: 301
Period size: 50 Copynumber: 9.6 Consensus size: 50
14220582 GCAGCGGAAC
* * *
14220592 AGATTGAAGCTACGACGGTGAATCTTACTTCCCCGACAGTGCAGTTCAAA
1 AGATCGAAGCTACAACGGCGAATCTTACTTCCCCGACAGTGCAGTTCAAA
* * * * * ** *
14220642 AGATCGAAGCCACAACGGCGAGTCTTACTTCTCTGGC-GATGCAGTGGAAC
1 AGATCGAAGCTACAACGGCGAATCTTACTTCCCCGACAG-TGCAGTTCAAA
* * * * * *
14220692 AGATTGAAGCTACAATGGTGAATCTCACTTCCCCGACATTGCAATTCAAA
1 AGATCGAAGCTACAACGGCGAATCTTACTTCCCCGACAGTGCAGTTCAAA
* * * *** *
14220742 AGATCGAAGCCACAACGGCGAATCTTACTT-CCAGGC-GATGCAGCGGAAC
1 AGATCGAAGCTACAACGGCGAATCTTACTTCCCCGACAG-TGCAGTTCAAA
* ** * * * * * *
14220791 AGATTGAAGCTACGGCGGTGAATCTCAATTCCCCGACATTGTAATTCAAA
1 AGATCGAAGCTACAACGGCGAATCTTACTTCCCCGACAGTGCAGTTCAAA
* * * * * * ** *
14220841 AGATCGATGCCACAATGGCAAATCTTACTTCCCTGGC-GATGCAGTGGAAC
1 AGATCGAAGCTACAACGGCGAATCTTACTTCCCCGACAG-TGCAGTTCAAA
* * * * * *
14220891 AGATTGAAGCTACGATGGCGAATCTCACTTCCCCGACATTGCAATTCAAA
1 AGATCGAAGCTACAACGGCGAATCTTACTTCCCCGACAGTGCAGTTCAAA
* * * *
14220941 AGATCGAAGCCACAACGGTGAATCTTACTT-CCAGGC-GATGCAG--CGAAA
1 AGATCGAAGCTACAACGGCGAATCTTACTTCCCCGACAG-TGCAGTTC-AAA
* ** * * * * *
14220989 CAGATTGAAGCTACGGCGTCGAATCTCACTTCCCCGACATTGAAGTTTAAA
1 -AGATCGAAGCTACAACGGCGAATCTTACTTCCCCGACAGTGCAGTTCAAA
*
14221040 AGATCGAGGCTACAACGGCGAATCTTACTTCC
1 AGATCGAAGCTACAACGGCGAATCTTACTTCC
14221072 AGGCGATGCA
Statistics
Matches: 303, Mismatches: 113, Indels: 28
0.68 0.25 0.06
Matches are distributed among these distances:
47 1 0.00
48 3 0.01
49 65 0.21
50 231 0.76
51 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.22
Consensus pattern (50 bp):
AGATCGAAGCTACAACGGCGAATCTTACTTCCCCGACAGTGCAGTTCAAA
Found at i:14220713 original size:100 final size:99
Alignment explanation
Indices: 14220541--14221163 Score: 851
Period size: 99 Copynumber: 6.3 Consensus size: 99
14220531 TTGCAAATTG
* * * *
14220541 AAAGATTGAGGCCACAACGGTGAATCTTACTTCCAAGCGATGCAGCGGAACAGATTGAAGCTACG
1 AAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACG
* * * *
14220606 ACGGTGAATCTTACTTCCCCGACAGTGCAGTTCA
66 ATGGTGAATCTCACTTCCCCGACATTGCAATTCA
* * *
14220640 AAAGATCGAAGCCACAACGGCGAGTCTTACTTCTCTGGCGATGCAGTGGAACAGATTGAAGCTAC
1 AAAGATCGAAGCCACAACGGCGAATCTTACTTC-CAGGCGATGCAGCGGAACAGATTGAAGCTAC
*
14220705 AATGGTGAATCTCACTTCCCCGACATTGCAATTCA
65 GATGGTGAATCTCACTTCCCCGACATTGCAATTCA
14220740 AAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACG
1 AAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACG
** * *
14220805 GCGGTGAATCTCAATTCCCCGACATTGTAATTCA
66 ATGGTGAATCTCACTTCCCCGACATTGCAATTCA
* * * * *
14220839 AAAGATCGATGCCACAATGGCAAATCTTACTTCCCTGGCGATGCAGTGGAACAGATTGAAGCTAC
1 AAAGATCGAAGCCACAACGGCGAATCTTACTT-CCAGGCGATGCAGCGGAACAGATTGAAGCTAC
*
14220904 GATGGCGAATCTCACTTCCCCGACATTGCAATTCA
65 GATGGTGAATCTCACTTCCCCGACATTGCAATTCA
* *
14220939 AAAGATCGAAGCCACAACGGTGAATCTTACTTCCAGGCGATGCAGCGAAACAGATTGAAGCTACG
1 AAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACG
*
14221004 --GCGTCGAATCTCACTTCCCCGACATTG-AAGTTTA
66 ATG-GT-GAATCTCACTTCCCCGACATTGCAA-TTCA
* *
14221038 AAAGATCGAGGCTACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACG
1 AAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACG
* ** * * *
14221103 ATGGCGAATCTTGCTTTCCCGACATTACAA--CT
66 ATGGTGAATCTCACTTCCCCGACATTGCAATTCA
* *
14221135 AAAGATTGAAGCCGCAACGGCGAATCTTA
1 AAAGATCGAAGCCACAACGGCGAATCTTA
14221164 TTTCTTCGGT
Statistics
Matches: 462, Mismatches: 54, Indels: 18
0.87 0.10 0.03
Matches are distributed among these distances:
97 26 0.06
98 3 0.01
99 251 0.54
100 181 0.39
101 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.22
Consensus pattern (99 bp):
AAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACG
ATGGTGAATCTCACTTCCCCGACATTGCAATTCA
Found at i:14220891 original size:199 final size:198
Alignment explanation
Indices: 14220541--14221163 Score: 912
Period size: 199 Copynumber: 3.1 Consensus size: 198
14220531 TTGCAAATTG
* * * *
14220541 AAAGATTGAGGCCACAACGGTGAATCTTACTTCCAAGCGATGCAGCGGAACAGATTGAAGCTACG
1 AAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACG
* * * * *
14220606 ACGGTGAATCTTACTTCCCCGACAGTGCAGTTCAAAAGATCGAAGCCACAACGGCGAGTCTTACT
66 GCGGTGAATCTCACTTCCCCGACATTG-AATTCAAAAGATCGAAGCCACAACGGCGAATCTTACT
* * *
14220671 TCTCTGGCGATGCAGTGGAACAGATTGAAGCTACAATGGTGAATCTCACTTCCCCGACATTGCAA
130 TCCCTGGCGATGCAGTGGAACAGATTGAAGCTACGATGGCGAATCTCACTTCCCCGACATTGCAA
14220736 TTCA
195 TTCA
14220740 AAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACG
1 AAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACG
* * * *
14220805 GCGGTGAATCTCAATTCCCCGACATTGTAATTCAAAAGATCGATGCCACAATGGCAAATCTTACT
66 GCGGTGAATCTCACTTCCCCGACATTG-AATTCAAAAGATCGAAGCCACAACGGCGAATCTTACT
14220870 TCCCTGGCGATGCAGTGGAACAGATTGAAGCTACGATGGCGAATCTCACTTCCCCGACATTGCAA
130 TCCCTGGCGATGCAGTGGAACAGATTGAAGCTACGATGGCGAATCTCACTTCCCCGACATTGCAA
14220935 TTCA
195 TTCA
* *
14220939 AAAGATCGAAGCCACAACGGTGAATCTTACTTCCAGGCGATGCAGCGAAACAGATTGAAGCTACG
1 AAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACG
* * *
14221004 GC-GTCGAATCTCACTTCCCCGACATTGAAGTTTAAAAGATCGAGGCTACAACGGCGAATCTTAC
66 GCGGT-GAATCTCACTTCCCCGACATTGAA-TTCAAAAGATCGAAGCCACAACGGCGAATCTTAC
* * ** * *
14221068 TT-CCAGGCGATGCAGCGGAACAGATTGAAGCTACGATGGCGAATCTTGCTTTCCCGACATTACA
129 TTCCCTGGCGATGCAGTGGAACAGATTGAAGCTACGATGGCGAATCTCACTTCCCCGACATTGCA
*
14221132 A--CT
194 ATTCA
* *
14221135 AAAGATTGAAGCCGCAACGGCGAATCTTA
1 AAAGATCGAAGCCACAACGGCGAATCTTA
14221164 TTTCTTCGGT
Statistics
Matches: 387, Mismatches: 35, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
196 27 0.07
198 61 0.16
199 299 0.77
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.22
Consensus pattern (198 bp):
AAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGATTGAAGCTACG
GCGGTGAATCTCACTTCCCCGACATTGAATTCAAAAGATCGAAGCCACAACGGCGAATCTTACTT
CCCTGGCGATGCAGTGGAACAGATTGAAGCTACGATGGCGAATCTCACTTCCCCGACATTGCAAT
TCA
Found at i:14222016 original size:3 final size:3
Alignment explanation
Indices: 14222008--14222042 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
14221998 TATTTTAGTG
14222008 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14222043 GCTTTTATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:14222207 original size:4 final size:4
Alignment explanation
Indices: 14222191--14222251 Score: 56
Period size: 4 Copynumber: 16.0 Consensus size: 4
14222181 TTTTATGTTC
* * ** *
14222191 ATTT ATGT ATTT ATTT ATAT ATCC A-TT -TTT ATGT -TTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
14222236 ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT
14222252 GCTATGGTAT
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
3 4 0.09
4 41 0.91
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (4 bp):
ATTT
Found at i:14222568 original size:109 final size:109
Alignment explanation
Indices: 14222377--14222781 Score: 686
Period size: 109 Copynumber: 3.7 Consensus size: 109
14222367 TTTCAAATTG
*
14222377 AGGCAATATTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
*
14222442 CGTTAAACCAAATGGCTTAATATCCTTTTAAAGATTTTAAAATA
66 CGTTAAACCAAATGGCTTAATATCCTTTTAAAAATTTTAAAATA
* * * *
14222486 AGGCAATGTTTTGCGTTTAGAAATTCGAGAAAATATGCCCTAAGGTGTTGGGTGTCAATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
* *
14222551 CGTTCAACCAAATGGCTTAATATCATTTTAAAAATTTTAAAATA
66 CGTTAAACCAAATGGCTTAATATCCTTTTAAAAATTTTAAAATA
* *
14222595 AGGCAATGTTTTGCATTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
* *
14222660 CGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTCAAAATA
66 CGTTAAACCAAATGGCTTAATATCCTTTTAAAAATTTTAAAATA
14222704 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
14222769 -GATTAAACCAAAT
66 CG-TTAAACCAAAT
14222782 TGCCAAAATA
Statistics
Matches: 276, Mismatches: 19, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
108 1 0.00
109 275 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.35
Consensus pattern (109 bp):
AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
CGTTAAACCAAATGGCTTAATATCCTTTTAAAAATTTTAAAATA
Found at i:14225812 original size:20 final size:21
Alignment explanation
Indices: 14225789--14225830 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
14225779 AAATTTTTTA
*
14225789 TTTT-TAAATATG-GATTTTGG
1 TTTTATAAA-ATGAGATTATGG
14225809 TTTTATAAAATGAGATTATGG
1 TTTTATAAAATGAGATTATGG
14225830 T
1 T
14225831 GTGTGTTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (21 bp):
TTTTATAAAATGAGATTATGG
Found at i:14229158 original size:21 final size:23
Alignment explanation
Indices: 14229134--14229176 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
14229124 TCGACACCAC
14229134 ATTA-AATTTC-TCATACATAGT
1 ATTATAATTTCATCATACATAGT
*
14229155 ATTATTATTTTCATCATACATA
1 ATTA-TAATTTCATCATACATA
14229177 CATAGATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 4 0.22
23 5 0.28
24 9 0.50
ACGTcount: A:0.37, C:0.14, G:0.02, T:0.47
Consensus pattern (23 bp):
ATTATAATTTCATCATACATAGT
Found at i:14232257 original size:22 final size:21
Alignment explanation
Indices: 14232232--14232275 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
14232222 CTATTTCTTC
14232232 TCTTC-TTTCCTTTGTCCTTTTT
1 TCTTCATTTCCTTT-T-CTTTTT
14232254 TCTTCATTTTCCTTTTCTTTTT
1 TCTTCA-TTTCCTTTTCTTTTT
14232276 CCCCCTCACT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 11 0.55
23 1 0.05
24 8 0.40
ACGTcount: A:0.02, C:0.25, G:0.02, T:0.70
Consensus pattern (21 bp):
TCTTCATTTCCTTTTCTTTTT
Found at i:14234579 original size:45 final size:44
Alignment explanation
Indices: 14234529--14234694 Score: 199
Period size: 45 Copynumber: 3.7 Consensus size: 44
14234519 ATACGCCAAG
*
14234529 ATGAGTAAGACCATAGCTGAAAGATGCTATGACGTCATGATAAAA
1 ATGAGTAAGACCATAGCTGAAAGAT-CTATGACATCATGATAAAA
* **
14234574 ATGAGTAAGACCATAGCTGAAAGA-CAATATGGCATCATGACGAAA
1 ATGAGTAAGACCATAGCTGAAAGATC--TATGACATCATGATAAAA
* *
14234619 ATGAGTAATACCATAGCTGAAAGACTCTATGACATCATGGTAAAA
1 ATGAGTAAGACCATAGCTGAAAGA-TCTATGACATCATGATAAAA
* * *
14234664 AGGACTAAGACAATAGCTGAAAGACTCTATG
1 ATGAGTAAGACCATAGCTGAAAGA-TCTATG
14234695 GAATCCTCTG
Statistics
Matches: 104, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
43 1 0.01
45 102 0.98
47 1 0.01
ACGTcount: A:0.43, C:0.15, G:0.21, T:0.21
Consensus pattern (44 bp):
ATGAGTAAGACCATAGCTGAAAGATCTATGACATCATGATAAAA
Found at i:14249130 original size:40 final size:40
Alignment explanation
Indices: 14249043--14249177 Score: 146
Period size: 40 Copynumber: 3.4 Consensus size: 40
14249033 AAATAGACCG
* * ***
14249043 AACACACCAGACAGAAGCTCATAAGAGCTTATCCAATTGA
1 AACACACCAAACAGAAGCTCATAAGAGCTGATCCACCCGA
* * *
14249083 AATACACCAAACAGAAGCTCATAAGAGCTGGTCCACCCAA
1 AACACACCAAACAGAAGCTCATAAGAGCTGATCCACCCGA
* *
14249123 AACACACC-AATAGAAGCTCGTAAGAGCTGATCCACCCGA
1 AACACACCAAACAGAAGCTCATAAGAGCTGATCCACCCGA
* * *
14249162 ATCACGCCAAATAGAA
1 AACACACCAAACAGAA
14249178 AGTATAACGC
Statistics
Matches: 79, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 33 0.42
40 46 0.58
ACGTcount: A:0.42, C:0.28, G:0.16, T:0.14
Consensus pattern (40 bp):
AACACACCAAACAGAAGCTCATAAGAGCTGATCCACCCGA
Found at i:14251008 original size:40 final size:38
Alignment explanation
Indices: 14250942--14251047 Score: 104
Period size: 40 Copynumber: 2.7 Consensus size: 38
14250932 ATAAAGCAGG
* ** * *
14250942 AAAACACTTCCTCAAGGAAGCGCTTTGTCTACGTGGAC
1 AAAACGCTTCCTTGAGGAAGCACTTTGTCCACGTGGAC
**
14250980 AGAAAACGCTTCCTTGAGGGCGCACTTTGTGTCCACGTGGAC
1 --AAAACGCTTCCTTGAGGAAGCAC-TT-TGTCCACGTGGAC
*
14251022 AAAGCGCTTCCTTGAGGAAGCACTTT
1 AAAACGCTTCCTTGAGGAAGCACTTT
14251048 CCCCGTTTGT
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 37 0.69
41 2 0.04
42 12 0.22
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (38 bp):
AAAACGCTTCCTTGAGGAAGCACTTTGTCCACGTGGAC
Found at i:14251185 original size:11 final size:11
Alignment explanation
Indices: 14251169--14251211 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
14251159 GTTTCTTAAT
14251169 TAAATTAATTA
1 TAAATTAATTA
14251180 TAAATT--TTA
1 TAAATTAATTA
14251189 -AAA--AATTA
1 TAAATTAATTA
14251197 TAAATTAATTA
1 TAAATTAATTA
14251208 TAAA
1 TAAA
14251212 GTCTAACTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 10
0.73 0.00 0.27
Matches are distributed among these distances:
8 6 0.22
9 6 0.22
11 15 0.56
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
TAAATTAATTA
Found at i:14251319 original size:19 final size:19
Alignment explanation
Indices: 14251295--14251331 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14251285 CTTCTACAGT
14251295 TTAAAATATATATTAAATA
1 TTAAAATATATATTAAATA
* *
14251314 TTAAAATTTATGTTAAAT
1 TTAAAATATATATTAAAT
14251332 TCCACTAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
TTAAAATATATATTAAATA
Found at i:14251515 original size:23 final size:22
Alignment explanation
Indices: 14251489--14251532 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
14251479 TTTATACAAA
*
14251489 AATTCATTATATATTTTATTTTT
1 AATTCATTATA-AATTTATTTTT
*
14251512 AATTTATTATAAATTTATTTT
1 AATTCATTATAAATTTATTTT
14251533 CATAAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (22 bp):
AATTCATTATAAATTTATTTTT
Found at i:14251546 original size:15 final size:15
Alignment explanation
Indices: 14251509--14251547 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
14251499 ATATTTTATT
*
14251509 TTTAATTTATTATAAA
1 TTTAATTT-TCATAAA
14251525 TTT-ATTTTCATAAA
1 TTTAATTTTCATAAA
14251539 TTTAATTTT
1 TTTAATTTT
14251548 TACTAAAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 9 0.43
15 9 0.43
16 3 0.14
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTAATTTTCATAAA
Found at i:14251554 original size:16 final size:15
Alignment explanation
Indices: 14251509--14251554 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
14251499 ATATTTTATT
14251509 TTTAATTTATTATAAA
1 TTTAATTT-TTATAAA
*
14251525 TTT-ATTTTCATAAA
1 TTTAATTTTTATAAA
14251539 TTTAATTTTTACTAAA
1 TTTAATTTTTA-TAAA
14251555 AACATTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 9 0.35
15 10 0.38
16 7 0.27
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTAATTTTTATAAA
Found at i:14251739 original size:97 final size:97
Alignment explanation
Indices: 14251618--14251885 Score: 423
Period size: 97 Copynumber: 2.8 Consensus size: 97
14251608 TAACAACTAG
* * *
14251618 ATTTATTTGA-TTTTTCCTTAAAAACCCTAAATACTAAACCCCAATCTAATTTTTTTAAAATTTA
1 ATTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATATAATTTTTTTAAAATTTA
*
14251682 TAATTAATTTGCTCAAGTAACCCTAAACCCTA
66 TAATTAATTTACTCAAGTAACCCTAAACCCTA
** *
14251714 ATTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATATAATTTTTAAAAAAATTA
1 ATTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATATAATTTTTTTAAAATTTA
14251779 TAATTAATTTACTCAAGTAACCCTAAACCCTA
66 TAATTAATTTACTCAAGTAACCCTAAACCCTA
* * * *
14251811 ATTTATTTGATTTTTTCCTTAAAAACCATAAACATTAAACCTTAATTTAA-TTTTTTAAAATTTA
1 ATTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATATAATTTTTTTAAAATTTA
14251875 TAATTAATTTA
66 TAATTAATTTA
14251886 ATTAAGAAAC
Statistics
Matches: 157, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
96 32 0.20
97 125 0.80
ACGTcount: A:0.40, C:0.16, G:0.02, T:0.41
Consensus pattern (97 bp):
ATTTATTTGATTTTTTCCTTAAAAACCCTAAACACTAAACCCTAATATAATTTTTTTAAAATTTA
TAATTAATTTACTCAAGTAACCCTAAACCCTA
Found at i:14252718 original size:18 final size:19
Alignment explanation
Indices: 14252683--14252722 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
14252673 GATTATATGA
14252683 CATTTCTTTAAGAAAATCT
1 CATTTCTTTAAGAAAATCT
14252702 CATTTCTTTAA-AAAATCT
1 CATTTCTTTAAGAAAATCT
14252720 CAT
1 CAT
14252723 GTGGCTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.38, C:0.17, G:0.03, T:0.42
Consensus pattern (19 bp):
CATTTCTTTAAGAAAATCT
Found at i:14255460 original size:29 final size:28
Alignment explanation
Indices: 14255361--14255463 Score: 115
Period size: 29 Copynumber: 3.7 Consensus size: 28
14255351 AAAAATAAAA
14255361 ATTTACCAAAATAT-TACAA--TTTTTTT
1 ATTTACCAAAATATATA-AACTTTTTTTT
** *
14255387 ATTTATTAAAATAGTA-CAACTTTTTTTTT
1 ATTTACCAAAATA-TATAAAC-TTTTTTTT
14255416 ATTTACCAAAATATATAAACTTTTTTATT
1 ATTTACCAAAATATATAAACTTTTTT-TT
14255445 ATTTACCAAAATATATAAA
1 ATTTACCAAAATATATAAA
14255464 AAAAAAAAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 11
0.79 0.07 0.14
Matches are distributed among these distances:
26 13 0.20
27 1 0.02
28 8 0.12
29 42 0.66
ACGTcount: A:0.42, C:0.10, G:0.01, T:0.48
Consensus pattern (28 bp):
ATTTACCAAAATATATAAACTTTTTTTT
Found at i:14255557 original size:27 final size:27
Alignment explanation
Indices: 14255536--14255629 Score: 143
Period size: 27 Copynumber: 3.5 Consensus size: 27
14255526 CGCCAATGGT
* *
14255536 ATTGGCGGCACCAAAGGTGCCAAAACC
1 ATTGGCGGCACCAATGGTGCCAATACC
*
14255563 ATTGGCGACACCAATGGTGCCAATACC
1 ATTGGCGGCACCAATGGTGCCAATACC
*
14255590 ATTGGCGGCACCAATGGTGCCAATGCC
1 ATTGGCGGCACCAATGGTGCCAATACC
*
14255617 ATTCGCGGCACCA
1 ATTGGCGGCACCA
14255630 CTCGTATTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.28, C:0.31, G:0.26, T:0.16
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAATACC
Found at i:14255704 original size:24 final size:26
Alignment explanation
Indices: 14255657--14255709 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14255647 ACCTCTACCC
14255657 AGCTGAAGAGAGAAAAATAAAAAAAA
1 AGCTGAAGAGAGAAAAATAAAAAAAA
*
14255683 AGCTGAAGAGAGAAAATTAAAAAAAA
1 AGCTGAAGAGAGAAAAATAAAAAAAA
14255709 A
1 A
14255710 AAGAAGAGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.68, C:0.04, G:0.19, T:0.09
Consensus pattern (26 bp):
AGCTGAAGAGAGAAAAATAAAAAAAA
Found at i:14255715 original size:25 final size:26
Alignment explanation
Indices: 14255661--14255717 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
14255651 CTACCCAGCT
**
14255661 GAAGAGAGAAAAATAAAAAAAAAGCT
1 GAAGAGAGAAAAATAAAAAAAAAGAA
*
14255687 GAAGAGAGAAAATTAAAAAAAAA-AA
1 GAAGAGAGAAAAATAAAAAAAAAGAA
14255712 GAAGAG
1 GAAGAG
14255718 TTAGTTTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 6 0.21
26 22 0.79
ACGTcount: A:0.70, C:0.02, G:0.21, T:0.07
Consensus pattern (26 bp):
GAAGAGAGAAAAATAAAAAAAAAGAA
Found at i:14255836 original size:36 final size:36
Alignment explanation
Indices: 14255794--14255892 Score: 92
Period size: 26 Copynumber: 3.0 Consensus size: 36
14255784 TTTTTTTTAG
14255794 TAAAATTAATAATTTTAGTGTGTATTATTTTGAGTA
1 TAAAATTAATAATTTTAGTGTGTATTATTTTGAGTA
* **
14255830 TAAAATTATTAA---TA---T-TA-T-TCGT-AGTA
1 TAAAATTAATAATTTTAGTGTGTATTATTTTGAGTA
*
14255856 TAAAATTAATAATTTTAGTGTGTATTATTTTGTGTA
1 TAAAATTAATAATTTTAGTGTGTATTATTTTGAGTA
14255892 T
1 T
14255893 TATTGTGAGT
Statistics
Matches: 46, Mismatches: 7, Indels: 20
0.63 0.10 0.27
Matches are distributed among these distances:
26 15 0.33
27 2 0.04
28 1 0.02
29 4 0.09
30 1 0.02
32 1 0.02
33 4 0.09
34 1 0.02
35 2 0.04
36 15 0.33
ACGTcount: A:0.36, C:0.01, G:0.12, T:0.51
Consensus pattern (36 bp):
TAAAATTAATAATTTTAGTGTGTATTATTTTGAGTA
Found at i:14256498 original size:18 final size:18
Alignment explanation
Indices: 14256455--14256499 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
14256445 TTGACATGGT
* *
14256455 TGGTGGTGAAGAAGAATG
1 TGGTGGCGAAGAAGAAGG
**
14256473 TGCCGGCGAAGAAGAAGG
1 TGGTGGCGAAGAAGAAGG
14256491 TGGTGGCGA
1 TGGTGGCGA
14256500 TCATTGGGAT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.29, C:0.09, G:0.47, T:0.16
Consensus pattern (18 bp):
TGGTGGCGAAGAAGAAGG
Found at i:14262152 original size:19 final size:19
Alignment explanation
Indices: 14262117--14262154 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
14262107 TTTAAACACA
14262117 CAAATATTACAAAAAAATT
1 CAAATATTACAAAAAAATT
*
14262136 CAAAT-TTATAAATAAAATT
1 CAAATATTACAAA-AAAATT
14262155 ACCTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.32
Consensus pattern (19 bp):
CAAATATTACAAAAAAATT
Found at i:14262213 original size:18 final size:18
Alignment explanation
Indices: 14262190--14262292 Score: 59
Period size: 18 Copynumber: 5.3 Consensus size: 18
14262180 TCTTCCCTCT
14262190 TCTTCTTCTTTTTTTTTC
1 TCTTCTTCTTTTTTTTTC
*
14262208 TCTTCTCCTTTCCCTTTCTTTC
1 TCTTCTTCTTT---TTT-TTTC
*
14262230 -CTTCTTTCTTTCTTTTT-
1 TCTTC-TTCTTTTTTTTTC
**
14262247 TCTTC-TCTTCTCCTTTTC
1 TCTTCTTCTT-TTTTTTTC
14262265 TTCTTCTTTCTTTCCTTTTTTC
1 -TCTTC-TTCTTT--TTTTTTC
14262287 TCTTCT
1 TCTTCT
14262293 CCTCTCCTTT
Statistics
Matches: 66, Mismatches: 6, Indels: 24
0.69 0.06 0.25
Matches are distributed among these distances:
16 4 0.06
17 6 0.09
18 17 0.26
19 7 0.11
20 2 0.03
21 16 0.24
22 14 0.21
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (18 bp):
TCTTCTTCTTTTTTTTTC
Found at i:14262225 original size:44 final size:44
Alignment explanation
Indices: 14262173--14262343 Score: 169
Period size: 44 Copynumber: 4.0 Consensus size: 44
14262163 TTCCCTTTTT
14262173 TTTCCTTTCTTCCCTCTTC-TTC-TTCTTTTTTTTTCTCTTCTCC
1 TTTCCTTTCTT-CCTCTTCTTTCTTTCTTTTTTTTTCTCTTCTCC
* *
14262216 TTTCCCTTTCTTTC-CTTCTTTCTTTCTTTTTTCTTCTCTTCTCC
1 TTT-CCTTTCTTCCTCTTCTTTCTTTCTTTTTTTTTCTCTTCTCC
* * * * *
14262260 TTTTC-TTCTT-CT-TTCTTTCCTT-TTTTCTCTTCTCCTCTCC
1 TTTCCTTTCTTCCTCTTCTTTCTTTCTTTTTTTTTCTCTTCTCC
*
14262300 TTT-CTTTCTTTCCTCTCCTTTCTTTCTTTCCTTTTTTCTCTTCT
1 TTTCCTTTC-TTCCTCTTCTTTCTTTCTTT--TTTTTTCTCTTCT
14262344 GCCCCCACCA
Statistics
Matches: 106, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
39 1 0.01
40 22 0.21
41 12 0.11
42 11 0.10
43 16 0.15
44 34 0.32
46 10 0.09
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (44 bp):
TTTCCTTTCTTCCTCTTCTTTCTTTCTTTTTTTTTCTCTTCTCC
Found at i:14262234 original size:39 final size:40
Alignment explanation
Indices: 14262191--14262307 Score: 138
Period size: 39 Copynumber: 3.0 Consensus size: 40
14262181 CTTCCCTCTT
14262191 CTTC-TTCTTTTTTTTTCTCTTCTCCTTTCCCTTTCTTTC
1 CTTCTTTCTTTTTTTTTCTCTTCTCCTTTCCCTTTCTTTC
* *
14262230 CTTCTTTCTTTCTTTTT-TCTTCT-CTTCTCCTTTTC-TT-
1 CTTCTTTCTTTTTTTTTCTCTTCTCCTT-TCCCTTTCTTTC
*
14262267 CTTCTTTCTTTCCTTTTTTCTCTTCTCCTCT-CCTTTCTTTC
1 CTTCTTTCTTT--TTTTTTCTCTTCTCCTTTCCCTTTCTTTC
14262308 TTTCCTCTCC
Statistics
Matches: 65, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
37 11 0.17
38 5 0.08
39 27 0.42
40 20 0.31
41 2 0.03
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (40 bp):
CTTCTTTCTTTTTTTTTCTCTTCTCCTTTCCCTTTCTTTC
Found at i:14262236 original size:8 final size:8
Alignment explanation
Indices: 14262223--14262343 Score: 52
Period size: 8 Copynumber: 14.5 Consensus size: 8
14262213 TCCTTTCCCT
14262223 TTCTTTCC
1 TTCTTTCC
*
14262231 TTCTTTCT
1 TTCTTTCC
*
14262239 TTCTTT-T
1 TTCTTTCC
14262246 TTCTTCTCTTC
1 TTCTT-TC--C
* *
14262257 TCCTTTTC
1 TTCTTTCC
*
14262265 TTC-TTCT
1 TTCTTTCC
14262272 TTCTTTCC
1 TTCTTTCC
*
14262280 TT-TTTTC
1 TTCTTTCC
14262287 -TCTTCTCC
1 TTCTT-TCC
*
14262295 TCTCCTTTCT
1 T-T-CTTTCC
14262305 TTCTTTCC
1 TTCTTTCC
*
14262313 TCTCCTTTCT
1 T-T-CTTTCC
14262323 TTCTTTCC
1 TTCTTTCC
*
14262331 TTTTTTCTC
1 TTCTTTC-C
14262340 TTCT
1 TTCT
14262344 GCCCCCACCA
Statistics
Matches: 84, Mismatches: 16, Indels: 25
0.67 0.13 0.20
Matches are distributed among these distances:
6 1 0.01
7 17 0.20
8 41 0.49
9 7 0.08
10 11 0.13
11 7 0.08
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (8 bp):
TTCTTTCC
Found at i:14262244 original size:26 final size:25
Alignment explanation
Indices: 14262215--14262343 Score: 65
Period size: 26 Copynumber: 5.1 Consensus size: 25
14262205 TTCTCTTCTC
14262215 CTTTCCCTTTCTTTCCTTCTTTCTTT
1 CTTT-CCTTTCTTTCCTTCTTTCTTT
*
14262241 CTTT--TTTC-TTCTCTTC-TCCTTTT
1 CTTTCCTTTCTTTC-CTTCTTTC-TTT
* *
14262264 CTTCTTCTTTCTTTCCTT-TTT-TCT
1 CTT-TCCTTTCTTTCCTTCTTTCTTT
* * *
14262288 CTTCTCCTCTCCTTTCTTTCTTTCCTCTC
1 CTT-TCCT-TTCTTTCCTTCTTT-CT-TT
*
14262317 CTTT-CTTTCTTTCCTTTTTTCTCTT
1 CTTTCCTTTCTTTCCTTCTTTCT-TT
14262342 CT
1 CT
14262344 GCCCCCACCA
Statistics
Matches: 79, Mismatches: 12, Indels: 25
0.68 0.10 0.22
Matches are distributed among these distances:
22 5 0.06
23 14 0.18
24 10 0.13
25 14 0.18
26 26 0.33
27 5 0.06
28 2 0.03
29 3 0.04
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (25 bp):
CTTTCCTTTCTTTCCTTCTTTCTTT
Found at i:14262256 original size:23 final size:23
Alignment explanation
Indices: 14262222--14262338 Score: 72
Period size: 23 Copynumber: 5.2 Consensus size: 23
14262212 CTCCTTTCCC
14262222 TTTCTTTC-CTTCTTTCTTTCTTT
1 TTTC-TTCTCTTCTTTCTTTCTTT
14262245 TTTCTTCTCTTC--TC---CTTT
1 TTTCTTCTCTTCTTTCTTTCTTT
*
14262263 TCTTCTTCT-TTCTTTCCTT-TTT
1 T-TTCTTCTCTTCTTTCTTTCTTT
* * *
14262285 TCTCTTCTCCTC-TCCTTTCTTT
1 TTTCTTCTCTTCTTTCTTTCTTT
*
14262307 CTTTCCTCTCCTTTCTTTCTTTCCTTT
1 -TTTCTTCT-C-TTCTTTCTTT-CTTT
14262334 TTTCT
1 TTTCT
14262339 CTTCTGCCCC
Statistics
Matches: 71, Mismatches: 9, Indels: 25
0.68 0.09 0.24
Matches are distributed among these distances:
18 8 0.11
19 7 0.10
20 2 0.03
21 12 0.17
22 12 0.17
23 14 0.20
24 1 0.01
25 2 0.03
26 9 0.13
27 4 0.06
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (23 bp):
TTTCTTCTCTTCTTTCTTTCTTT
Found at i:14262305 original size:33 final size:34
Alignment explanation
Indices: 14262233--14262313 Score: 105
Period size: 33 Copynumber: 2.4 Consensus size: 34
14262223 TTCTTTCCTT
*
14262233 CTTTCTTTCTTT--TTTCTTCTCTTCTCCTTTTC
1 CTTTCTTTCTTTCCTTTCTTCTCTTCTCCTTCTC
* *
14262265 TTCTTCTTTCTTTCCTTTTTTCTCTTCTCC-TCTC
1 CT-TTCTTTCTTTCCTTTCTTCTCTTCTCCTTCTC
14262299 CTTTCTTTCTTTCCT
1 CTTTCTTTCTTTCCT
14262314 CTCCTTTCTT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
32 1 0.02
33 23 0.55
34 4 0.10
35 14 0.33
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (34 bp):
CTTTCTTTCTTTCCTTTCTTCTCTTCTCCTTCTC
Found at i:14262309 original size:40 final size:39
Alignment explanation
Indices: 14262189--14262309 Score: 153
Period size: 40 Copynumber: 3.1 Consensus size: 39
14262179 TTCTTCCCTC
*
14262189 TTCTTC-TTCTTT-TTTTTTCTCTTCTCCTTTCCCTTTCT
1 TTCTTCTTTCTTTCTTTTTTCTCTTCTCCTCT-CCTTTCT
*
14262227 TTCCTTCTTTCTTTC-TTTTT-TCTTCTCTTCTCCTTT-T
1 TT-CTTCTTTCTTTCTTTTTTCTCTTCTCCTCTCCTTTCT
14262264 CTTCTTCTTTCTTTCCTTTTTTCTCTTCTCCTCTCCTTTCT
1 -TTCTTCTTTCTTT-CTTTTTTCTCTTCTCCTCTCCTTTCT
14262305 TTCTT
1 TTCTT
14262310 TCCTCTCCTT
Statistics
Matches: 72, Mismatches: 3, Indels: 14
0.81 0.03 0.16
Matches are distributed among these distances:
37 12 0.17
38 10 0.14
39 18 0.25
40 31 0.43
41 1 0.01
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (39 bp):
TTCTTCTTTCTTTCTTTTTTCTCTTCTCCTCTCCTTTCT
Found at i:14262341 original size:18 final size:18
Alignment explanation
Indices: 14262201--14262341 Score: 89
Period size: 18 Copynumber: 7.6 Consensus size: 18
14262191 CTTCTTCTTT
14262201 TTTTTTCTCTTCTCCTTTCCC
1 TTTTTTCTCTT-T-CTTT-CC
14262222 TTTCTTTCCTTCTTTCTTT-C
1 TTT-TTT-C-TCTTTCTTTCC
*
14262242 TTTTTTCT-TCTCTTCTCC
1 TTTTTTCTCTTTCTT-TCC
14262260 TTTTCTTCTTCTTTCTTTCC
1 TTTT-TTC-TCTTTCTTTCC
14262280 TTTTTTCTC-TTC--TCC
1 TTTTTTCTCTTTCTTTCC
**
14262295 TCTCCTT-TCTTTCTTTCC
1 T-TTTTTCTCTTTCTTTCC
**
14262313 TCTCCTT-TCTTTCTTTCC
1 T-TTTTTCTCTTTCTTTCC
14262331 TTTTTTCTCTT
1 TTTTTTCTCTT
14262342 CTGCCCCCAC
Statistics
Matches: 101, Mismatches: 6, Indels: 29
0.74 0.04 0.21
Matches are distributed among these distances:
15 6 0.06
16 11 0.11
17 8 0.08
18 34 0.34
19 9 0.09
20 12 0.12
21 8 0.08
22 7 0.07
23 2 0.02
24 4 0.04
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTTTCTCTTTCTTTCC
Found at i:14262452 original size:27 final size:27
Alignment explanation
Indices: 14262377--14262443 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
14262367 TAAAACCAAC
14262377 TGGTGCCGCCAATGGTATTGGCACCAT
1 TGGTGCCGCCAATGGTATTGGCACCAT
* *
14262404 TGGTGCCGCCAATGGTTTTGGCACCTT
1 TGGTGCCGCCAATGGTATTGGCACCAT
14262431 TGGTGCCGCCAAT
1 TGGTGCCGCCAAT
14262444 ACCATTGGCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.15, C:0.27, G:0.30, T:0.28
Consensus pattern (27 bp):
TGGTGCCGCCAATGGTATTGGCACCAT
Found at i:14262571 original size:27 final size:28
Alignment explanation
Indices: 14262519--14262621 Score: 131
Period size: 29 Copynumber: 3.7 Consensus size: 28
14262509 TGTTTTTTGT
14262519 TTTATATATTTTGGTAAATAATAAAAAAG
1 TTTATATATTTTGGTAAATAA-AAAAAAG
*
14262548 TTTATATATTTTGGTAAAT--AAAAAAT
1 TTTATATATTTTGGTAAATAAAAAAAAG
*
14262574 TTTGTAATATTTTGGTAAATAAAAAAAAG
1 TTTAT-ATATTTTGGTAAATAAAAAAAAG
*
14262603 TTGTA-ATATTTTGATAAAT
1 TT-TATATATTTTGGTAAAT
14262622 TTTTATTTTT
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
26 10 0.15
27 14 0.22
28 13 0.20
29 27 0.42
30 1 0.02
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.44
Consensus pattern (28 bp):
TTTATATATTTTGGTAAATAAAAAAAAG
Found at i:14262599 original size:28 final size:28
Alignment explanation
Indices: 14262524--14262621 Score: 137
Period size: 28 Copynumber: 3.5 Consensus size: 28
14262514 TTTGTTTTAT
14262524 ATATTTTGGTAAATAATAAAAAAGTT-TA
1 ATATTTTGGTAAATAA-AAAAAAGTTGTA
**
14262552 TATATTTTGGTAAAT-AAAAAATTTTGTA
1 -ATATTTTGGTAAATAAAAAAAAGTTGTA
14262580 ATATTTTGGTAAATAAAAAAAAGTTGTA
1 ATATTTTGGTAAATAAAAAAAAGTTGTA
*
14262608 ATATTTTGATAAAT
1 ATATTTTGGTAAAT
14262622 TTTTATTTTT
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 21 0.34
28 27 0.44
29 14 0.23
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (28 bp):
ATATTTTGGTAAATAAAAAAAAGTTGTA
Found at i:14266063 original size:21 final size:21
Alignment explanation
Indices: 14266037--14266076 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
14266027 CAAAACAACG
*
14266037 TAGTTTTGCCTTTTAACTTGA
1 TAGTTTTGACTTTTAACTTGA
14266058 TAGTTTTGACTTTTAACTT
1 TAGTTTTGACTTTTAACTT
14266077 TAGAAAAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.12, G:0.12, T:0.55
Consensus pattern (21 bp):
TAGTTTTGACTTTTAACTTGA
Found at i:14266277 original size:16 final size:16
Alignment explanation
Indices: 14266256--14266286 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14266246 CATGTTAGAA
14266256 AATATAAATTTGAAAC
1 AATATAAATTTGAAAC
*
14266272 AATATATATTTGAAA
1 AATATAAATTTGAAA
14266287 ACTTTTTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.35
Consensus pattern (16 bp):
AATATAAATTTGAAAC
Found at i:14266460 original size:27 final size:27
Alignment explanation
Indices: 14266418--14266479 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
14266408 TAGATTTTTT
*
14266418 TAAA-TTTATAATTTTTAAAAAAATTA
1 TAAATTTTAGAATTTTTAAAAAAATTA
* * *
14266444 TAAATTTTAGAATTTTTATAAATATTT
1 TAAATTTTAGAATTTTTAAAAAAATTA
*
14266471 TGAATTTTA
1 TAAATTTTA
14266480 AAAATTATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 4 0.13
27 26 0.87
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (27 bp):
TAAATTTTAGAATTTTTAAAAAAATTA
Found at i:14266479 original size:18 final size:19
Alignment explanation
Indices: 14266441--14266478 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
14266431 TTTAAAAAAA
*
14266441 TTATAAAT-TTTAGAATTT
1 TTATAAATATTTTGAATTT
14266459 TTATAAATATTTTGAATTT
1 TTATAAATATTTTGAATTT
14266478 T
1 T
14266479 AAAAATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (19 bp):
TTATAAATATTTTGAATTT
Found at i:14266484 original size:18 final size:21
Alignment explanation
Indices: 14266447--14266490 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
14266437 AAAATTATAA
*
14266447 ATTTTAGAATTTTTATAAA-T
1 ATTTTAGAATTTTTAAAAATT
14266467 ATTTT-GAA-TTTTAAAAATT
1 ATTTTAGAATTTTTAAAAATT
14266486 ATTTT
1 ATTTT
14266491 CAAAATTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 8 0.36
19 9 0.41
20 5 0.23
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (21 bp):
ATTTTAGAATTTTTAAAAATT
Found at i:14268644 original size:69 final size:67
Alignment explanation
Indices: 14268571--14268784 Score: 207
Period size: 69 Copynumber: 3.1 Consensus size: 67
14268561 TTAAACTTAA
* **
14268571 TATTATTTTAGTTTTATTATTAATATTGTTTAATTTATTGTATATTATTATCTTAGATTTATCAT
1 TATTATTTTAATTTTATTATTAATATT-TTTAATTTATCATATATTATTAT-TTAGATTTATCAT
*
14268636 GCAT
64 GTAT
* * * * ** *
14268640 TATTATTTGTAATTTATCAATATTATTATTTTAAATTCATCAT-TAACATTATTTAAATTTATCA
1 TATTATTT-TAATTT-T-ATTATTAATATTTTTAATTTATCATATATTATTATTTAGATTTATCA
14268704 TGTA-
63 TGTAT
* * *
14268708 TATTTATTTTAAATTTATCATTAATATTTTTAAATTTATCATATATTATTATTTTGAATTTATCA
1 TA-TTATTTTAATTTTATTATTAATATTTTT-AATTTATCATATATTATTATTTAG-ATTTATCA
*
14268773 GGTAT
63 TGTAT
14268778 TATTATT
1 TATTATT
14268785 ATTAGAATAA
Statistics
Matches: 115, Mismatches: 22, Indels: 16
0.75 0.14 0.10
Matches are distributed among these distances:
66 11 0.10
67 10 0.09
68 16 0.14
69 44 0.38
70 14 0.12
71 10 0.09
72 10 0.09
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (67 bp):
TATTATTTTAATTTTATTATTAATATTTTTAATTTATCATATATTATTATTTAGATTTATCATGT
AT
Found at i:14268715 original size:46 final size:45
Alignment explanation
Indices: 14268571--14268772 Score: 185
Period size: 45 Copynumber: 4.4 Consensus size: 45
14268561 TTAAACTTAA
** * * **
14268571 TATTATTTTAGTTTTATTATTAATATTGTTT-AATTTATTGTATAT
1 TATTATTTTAAATTTATCATTAACATT-TTTAAATTTATCATATAT
* * * ** *
14268616 TATTATCTTAGATTTATCATGCATTATTATTTGTAATTTATCA-ATAT
1 TATTATTTTAAATTTATCAT-TAACATT-TTT-AAATTTATCATATAT
* *
14268663 TATTATTTTAAATTCATCATTAACATTATTTAAATTTATCATGTA-
1 TATTATTTTAAATTTATCATTAACATT-TTTAAATTTATCATATAT
*
14268708 TATTTATTTTAAATTTATCATTAATATTTTTAAATTTATCATATAT
1 TA-TTATTTTAAATTTATCATTAACATTTTTAAATTTATCATATAT
*
14268754 TATTATTTTGAATTTATCA
1 TATTATTTTAAATTTATCA
14268773 GGTATTATTA
Statistics
Matches: 131, Mismatches: 20, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
45 60 0.46
46 43 0.33
47 21 0.16
48 7 0.05
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.57
Consensus pattern (45 bp):
TATTATTTTAAATTTATCATTAACATTTTTAAATTTATCATATAT
Found at i:14268720 original size:24 final size:25
Alignment explanation
Indices: 14268570--14268784 Score: 155
Period size: 24 Copynumber: 9.3 Consensus size: 25
14268560 TTTAAACTTA
** *
14268570 ATATTATTTTAGTTTTATTAT-TA-
1 ATATTATTTTAAATTTATCATGTAT
*
14268593 ATATT-GTTT-AATTTAT--TGTAT
1 ATATTATTTTAAATTTATCATGTAT
* * *
14268614 ATTATTATCTTAGATTTATCATGCAT
1 A-TATTATTTTAAATTTATCATGTAT
*
14268640 -TATTATTTGT-AATTTATCA-ATAT
1 ATATTATTT-TAAATTTATCATGTAT
*
14268663 -TATTATTTTAAATTCATCAT-TA-
1 ATATTATTTTAAATTTATCATGTAT
*
14268685 ACATTA-TTTAAATTTATCATGTAT
1 ATATTATTTTAAATTTATCATGTAT
14268709 AT-TTATTTTAAATTTATCAT-TA-
1 ATATTATTTTAAATTTATCATGTAT
*
14268731 ATA-T-TTTTAAATTTATCATATAT
1 ATATTATTTTAAATTTATCATGTAT
* *
14268754 -TATTATTTTGAATTTATCAGGTAT
1 ATATTATTTTAAATTTATCATGTAT
14268778 -TATTATT
1 ATATTATT
14268785 ATTAGAATAA
Statistics
Matches: 155, Mismatches: 18, Indels: 37
0.74 0.09 0.18
Matches are distributed among these distances:
19 1 0.01
20 2 0.01
21 21 0.14
22 28 0.18
23 39 0.25
24 59 0.38
25 1 0.01
26 4 0.03
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (25 bp):
ATATTATTTTAAATTTATCATGTAT
Found at i:14268749 original size:114 final size:114
Alignment explanation
Indices: 14268627--14268839 Score: 274
Period size: 114 Copynumber: 1.9 Consensus size: 114
14268617 ATTATCTTAG
* * *
14268627 ATTTATCATGCATTATTA-TTTGTAATTTATCA-ATATTATTATT-TTA-AATTCATCATTAACA
1 ATTTATCATACATTATTATTTTG-AATTTATCAGATATTATTATTATTAGAA-TAATCATCAA-A
*
14268688 TTATTTAAATTTATCATGTA-TATTTATTTTAAATTTATCATTAATATTTTTAA
63 TT-TTTAAATTTATCATGTATTA-TTATTTCAAATTTATCATTAATATTTTTAA
* * *
14268741 ATTTATCATATATTATTATTTTGAATTTATCAGGTATTATTATTATTAGAATAATCATCCAATTT
1 ATTTATCATACATTATTATTTTGAATTTATCAGATATTATTATTATTAGAATAATCATCAAATTT
*
14268806 TTAAATTTATTATGTATTATTATTTCAAATTTAT
66 TTAAATTTATCATGTATTATTATTTCAAATTTAT
14268840 TATATATTGT
Statistics
Matches: 86, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
114 55 0.64
115 19 0.22
116 10 0.12
117 2 0.02
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.54
Consensus pattern (114 bp):
ATTTATCATACATTATTATTTTGAATTTATCAGATATTATTATTATTAGAATAATCATCAAATTT
TTAAATTTATCATGTATTATTATTTCAAATTTATCATTAATATTTTTAA
Found at i:14268835 original size:24 final size:23
Alignment explanation
Indices: 14268594--14268861 Score: 162
Period size: 24 Copynumber: 11.6 Consensus size: 23
14268584 TTATTATTAA
* **
14268594 TATTGTTT-AATTTATTGTATAT
1 TATTATTTAAATTTATCATATAT
* **
14268616 TATTATCTTAGATTTATCATGCAT
1 TATTAT-TTAAATTTATCATATAT
*
14268640 TATTATTTGTAATTTATCA-ATAT
1 TATTATTT-AAATTTATCATATAT
* *
14268663 TATTATTTTAAATTCATCAT-TAA
1 TATTA-TTTAAATTTATCATATAT
* *
14268686 CATTATTTAAATTTATCATGTA-
1 TATTATTTAAATTTATCATATAT
*
14268708 TATTTATTTTAAATTTATCAT-TAA
1 TA-TTA-TTTAAATTTATCATATAT
14268732 TATT-TTTAAATTTATCATATAT
1 TATTATTTAAATTTATCATATAT
*
14268754 TATTATTTTGAATTTATCAGGTATTAT
1 TATTA-TTTAAATTTATCA--TA-TAT
* **
14268781 TATTA-TTAGAA-TAATCATCCA-
1 TATTATTTA-AATTTATCATATAT
* *
14268802 -ATT-TTTAAATTTATTATGTAT
1 TATTATTTAAATTTATCATATAT
*
14268823 TATTATTTCAAATTTATTATATAT
1 TATTATTT-AAATTTATCATATAT
*
14268847 TGTTTATTGTAAATT
1 T-ATTATT-TAAATT
14268862 ACTCTATTCA
Statistics
Matches: 194, Mismatches: 28, Indels: 45
0.73 0.10 0.17
Matches are distributed among these distances:
19 2 0.01
20 12 0.06
21 14 0.07
22 29 0.15
23 38 0.20
24 69 0.36
25 17 0.09
26 5 0.03
27 8 0.04
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.55
Consensus pattern (23 bp):
TATTATTTAAATTTATCATATAT
Found at i:14269136 original size:12 final size:12
Alignment explanation
Indices: 14269121--14269145 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14269111 TTACATGTAA
14269121 TTTTAAATGATT
1 TTTTAAATGATT
14269133 TTTTAAATGATT
1 TTTTAAATGATT
14269145 T
1 T
14269146 ATTTTAATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (12 bp):
TTTTAAATGATT
Found at i:14274820 original size:6 final size:6
Alignment explanation
Indices: 14274809--14274835 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
14274799 GAAAGAAATG
14274809 AAGGGA AAGGGA AAGGGA AAGGGA AAG
1 AAGGGA AAGGGA AAGGGA AAGGGA AAG
14274836 AATGGGAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (6 bp):
AAGGGA
Done.