Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62681010
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1052928 characters in sequence are not A, C, G, or T
File 76 of 210
Found at i:22801065 original size:35 final size:35
Alignment explanation
Indices: 22801015--22801085 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
22801005 CGGCGTTTGT
* *
22801015 GATAAAAGTGCCGCTAAAGGTCATGTTCTATAGCG
1 GATAAAAGCGCCGCTAAAGGTCATGCTCTATAGCG
* *
22801050 GATAAAAGCGTCGCTAAAGGTCATGCTCTTTAGCG
1 GATAAAAGCGCCGCTAAAGGTCATGCTCTATAGCG
22801085 G
1 G
22801086 CGTTTGTGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (35 bp):
GATAAAAGCGCCGCTAAAGGTCATGCTCTATAGCG
Found at i:22802706 original size:110 final size:109
Alignment explanation
Indices: 22802538--22802972 Score: 698
Period size: 110 Copynumber: 4.0 Consensus size: 109
22802528 AAGATTTAGG
* * *
22802538 AGGATATTTGGCTATCTGGTCGAACGAG--AAATCGAAACCCTGCACATTAGGGCACGTTTTCTC
1 AGGATATTTGCCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
*
22802601 GAATTTTCAAACGCAAAACATTGCCTTATTTTGAAATTTTTTAAA
66 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAA-TTTTTAAA
22802646 AGGATATTTGCCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
1 AGGATATTTGCCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
*
22802711 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAA
66 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
22802755 AGGATATTTGGCC-ATTTGGTCGAACGAGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTC
1 AGGATATTT-GCCTATTTGGTCGAACGAG-AAAAATCGAAACCCAGCACATTAGGGCACGTTTTC
22802819 TCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
64 TCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
* *
22802865 AGGATATTTG-GTCATTTGGTCGAACGAGAAAAATCGAAACCCAGCATATTAGGGCACGTTTTTC
1 AGGATATTTGCCT-ATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACG-TTTTC
* * *
22802929 TCGAATTTCCAAACGCAAAATATTCCCTTATTTAGAAAATTTTT
64 TCGAATTTCCAAACGCAAAACATTGCCTTATTTTG-AAATTTTT
22802973 TCTTTTTGAA
Statistics
Matches: 308, Mismatches: 11, Indels: 13
0.93 0.03 0.04
Matches are distributed among these distances:
108 26 0.08
109 61 0.20
110 213 0.69
111 8 0.03
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (109 bp):
AGGATATTTGCCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
Found at i:22803621 original size:3 final size:3
Alignment explanation
Indices: 22803613--22803642 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
22803603 AAAATGAGCA
22803613 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
22803643 TTGAAAATAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:22803745 original size:12 final size:13
Alignment explanation
Indices: 22803719--22803747 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
22803709 ATATATAACA
22803719 AAAATAAACAAAT
1 AAAATAAACAAAT
22803732 AAAATAAA-AAAT
1 AAAATAAACAAAT
22803744 AAAA
1 AAAA
22803748 AGTAATCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (13 bp):
AAAATAAACAAAT
Found at i:22816360 original size:16 final size:16
Alignment explanation
Indices: 22816327--22816365 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
22816317 CTATTAATTT
*
22816327 TTTTATTTAATCACTA
1 TTTTATTTAATCAATA
22816343 TTTT-TTTAATCAAATA
1 TTTTATTTAATC-AATA
22816359 TTTTATT
1 TTTTATT
22816366 CACTTTCCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 7 0.35
16 11 0.55
17 2 0.10
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTTATTTAATCAATA
Found at i:22816763 original size:20 final size:20
Alignment explanation
Indices: 22816729--22816770 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
22816719 AACTATTTAA
** *
22816729 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
22816749 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
22816769 AT
1 AT
22816771 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:22821835 original size:21 final size:21
Alignment explanation
Indices: 22821809--22821851 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
22821799 CACTCCAGAT
22821809 ATGTCATGCTTGAGTTGTGAC
1 ATGTCATGCTTGAGTTGTGAC
22821830 ATGTCATGCTTGAGTTGTGAC
1 ATGTCATGCTTGAGTTGTGAC
22821851 A
1 A
22821852 AAGCCAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.21, C:0.14, G:0.28, T:0.37
Consensus pattern (21 bp):
ATGTCATGCTTGAGTTGTGAC
Found at i:22822430 original size:13 final size:13
Alignment explanation
Indices: 22822412--22822451 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 13
22822402 CGGCCCGCCC
22822412 ATATTAATTTTTT
1 ATATTAATTTTTT
22822425 ATATT-A-TTTTT
1 ATATTAATTTTTT
*
22822436 ATA-TAATTTTTA
1 ATATTAATTTTTT
22822448 ATAT
1 ATAT
22822452 ATATAATACA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
10 1 0.04
11 9 0.39
12 8 0.35
13 5 0.22
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
ATATTAATTTTTT
Found at i:22822659 original size:11 final size:11
Alignment explanation
Indices: 22822626--22822666 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
22822616 ACAATAACCA
22822626 TAAAATAGTAG
1 TAAAATAGTAG
* *
22822637 TAACATAATAG
1 TAAAATAGTAG
*
22822648 TAAAATGGTAG
1 TAAAATAGTAG
22822659 TAAAATAG
1 TAAAATAG
22822667 GGAAAAAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.54, C:0.02, G:0.17, T:0.27
Consensus pattern (11 bp):
TAAAATAGTAG
Found at i:22832765 original size:46 final size:46
Alignment explanation
Indices: 22832692--22832784 Score: 141
Period size: 46 Copynumber: 2.0 Consensus size: 46
22832682 TAGAGAAACT
* * * *
22832692 GAATCGGGTTGTATCATATAATTGAGTACTGGGTCAAAAAGGCCAA
1 GAATCGAGTTGGATCACATAATAGAGTACTGGGTCAAAAAGGCCAA
*
22832738 GAATCGAGTTGGATCACATAATAGAGTACTGGGTTAAAAAGGCCAA
1 GAATCGAGTTGGATCACATAATAGAGTACTGGGTCAAAAAGGCCAA
22832784 G
1 G
22832785 GAAGTACTCG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.24
Consensus pattern (46 bp):
GAATCGAGTTGGATCACATAATAGAGTACTGGGTCAAAAAGGCCAA
Found at i:22837354 original size:21 final size:21
Alignment explanation
Indices: 22837282--22837356 Score: 69
Period size: 21 Copynumber: 3.6 Consensus size: 21
22837272 TACGTTGTGG
*
22837282 TGTCGCGACATCCCTAGGTGA
1 TGTCGCGACATCCCTGGGTGA
* * * *
22837303 TATTGCAACATCCCTGGGTTA
1 TGTCGCGACATCCCTGGGTGA
* * * *
22837324 TTTTGTGACATTCCTGGGTGA
1 TGTCGCGACATCCCTGGGTGA
22837345 TGTCGCGACATC
1 TGTCGCGACATC
22837357 AAGAGAAGAT
Statistics
Matches: 40, Mismatches: 14, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.19, C:0.24, G:0.25, T:0.32
Consensus pattern (21 bp):
TGTCGCGACATCCCTGGGTGA
Found at i:22843158 original size:47 final size:47
Alignment explanation
Indices: 22843104--22843199 Score: 165
Period size: 47 Copynumber: 2.0 Consensus size: 47
22843094 ATTTAAGAGA
22843104 TTAAAAAGGAAAAATAAATCAAATTTGATTATGGGTAATTAGCTAGC
1 TTAAAAAGGAAAAATAAATCAAATTTGATTATGGGTAATTAGCTAGC
* * *
22843151 TTAAAAAGGAAGAATAAATCAAATTTTATTATGGGTAATTAGCTCGC
1 TTAAAAAGGAAAAATAAATCAAATTTGATTATGGGTAATTAGCTAGC
22843198 TT
1 TT
22843200 CGGTAATCTC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.44, C:0.07, G:0.17, T:0.32
Consensus pattern (47 bp):
TTAAAAAGGAAAAATAAATCAAATTTGATTATGGGTAATTAGCTAGC
Found at i:22852306 original size:21 final size:21
Alignment explanation
Indices: 22852280--22852323 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
22852270 CTAAGTTGGG
22852280 TCACATGACCAAGCCACACAC
1 TCACATGACCAAGCCACACAC
22852301 TCACATGACCAAGCCACACAC
1 TCACATGACCAAGCCACACAC
22852322 TC
1 TC
22852324 GTCTGCCAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.43, G:0.09, T:0.11
Consensus pattern (21 bp):
TCACATGACCAAGCCACACAC
Found at i:22853346 original size:36 final size:35
Alignment explanation
Indices: 22853306--22853446 Score: 122
Period size: 35 Copynumber: 4.0 Consensus size: 35
22853296 AGTTCATCGT
* * *
22853306 CAATCCATCCAAAATACACCAGATGTTCACACGAGC
1 CAATCCATCCAAAACACACCA-ATGCTCACAAGAGC
*
22853342 CAAT-CACTCCAAAACACACCAATGCTCATAAGAGC
1 CAATCCA-TCCAAAACACACCAATGCTCACAAGAGC
* * * * * *
22853377 TAGTCCAACCAAAACACACCAATTCTCATAAGAGA
1 CAATCCATCCAAAACACACCAATGCTCACAAGAGC
* * * * *
22853412 TAGTCCCTCCGAAACACACCAATGCTCATAAGAGC
1 CAATCCATCCAAAACACACCAATGCTCACAAGAGC
22853447 TAGTCTAACT
Statistics
Matches: 89, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
35 70 0.79
36 19 0.21
ACGTcount: A:0.40, C:0.33, G:0.11, T:0.16
Consensus pattern (35 bp):
CAATCCATCCAAAACACACCAATGCTCACAAGAGC
Found at i:22853461 original size:35 final size:35
Alignment explanation
Indices: 22853353--22853468 Score: 160
Period size: 35 Copynumber: 3.3 Consensus size: 35
22853343 AATCACTCCA
*
22853353 AAACACACCAATGCTCATAAGAGCTAGTCCAACCA
1 AAACACACCAATGCTCATAAGAGCTAGTCCAACCG
* * **
22853388 AAACACACCAATTCTCATAAGAGATAGTCCCTCCG
1 AAACACACCAATGCTCATAAGAGCTAGTCCAACCG
* *
22853423 AAACACACCAATGCTCATAAGAGCTAGTCTAACTG
1 AAACACACCAATGCTCATAAGAGCTAGTCCAACCG
*
22853458 AAACATACCAA
1 AAACACACCAA
22853469 ACAGAGAATA
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 69 1.00
ACGTcount: A:0.42, C:0.29, G:0.11, T:0.17
Consensus pattern (35 bp):
AAACACACCAATGCTCATAAGAGCTAGTCCAACCG
Found at i:22856176 original size:16 final size:18
Alignment explanation
Indices: 22856147--22856182 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
22856137 GAATTAATTT
22856147 AAATAAATTAATTTT-TC
1 AAATAAATTAATTTTCTC
22856164 AAATAAA-TAATTTTCTC
1 AAATAAATTAATTTTCTC
22856181 AA
1 AA
22856183 CCCAATTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (18 bp):
AAATAAATTAATTTTCTC
Found at i:22856446 original size:16 final size:18
Alignment explanation
Indices: 22856417--22856452 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
22856407 CAATTAATTT
22856417 AAATAAATTAA-TTTCTC
1 AAATAAATTAATTTTCTC
22856434 AAATAAA-TAATTTTCTC
1 AAATAAATTAATTTTCTC
22856451 AA
1 AA
22856453 CCCAATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATAAATTAATTTTCTC
Found at i:22856501 original size:270 final size:270
Alignment explanation
Indices: 22856020--22857103 Score: 1859
Period size: 270 Copynumber: 4.0 Consensus size: 270
22856010 CATCCATTGT
*
22856020 ATTTTTTCCTGTACTGGATCCAATTATATGTACTTCTTGAACTTTAACCCAACACTCTATAATTT
1 ATTTTTTCCTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
* * * *
22856085 ATTTCAACCCAATACAAGTTTTTTCTATTTCCCAAATTAAATATTATTTGTTGAATTAATTTAAA
66 ATTCCAACCCAATACATGTTTTTTCTATTTCCCAAATTAAATATTATTTGCTCAATTAATTTAAA
*
22856150 TAAATTAATTTTTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGACAAC
131 TAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGACAAC
*
22856215 TTTACCATAAAAGAATCTATGAGAAAATGTATTTAAATTTTTTTTACATTAAATTAGATTCACAA
196 TTTACCATAAAAGAATCTATGAGAAAATATATTTAAATTTTTTTTACATTAAATTAGATTCACAA
22856280 TAACCAATTA
261 TAACCAATTA
22856290 ATTTTTTCCTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
1 ATTTTTTCCTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
*
22856355 ATTCCAATCCAATACATGTTTTTTCTATTTCCCAAATTAAATATTATTTGCTCAATTAATTTAAA
66 ATTCCAACCCAATACATGTTTTTTCTATTTCCCAAATTAAATATTATTTGCTCAATTAATTTAAA
*
22856420 TAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTTTAATTCTGTTAAAATTATGACAAC
131 TAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGACAAC
* *
22856485 TTTACAATAAAAGAATCTATGAGAACATATATTTAAATTTTTTTTACATTAAATTAGATTCACAA
196 TTTACCATAAAAGAATCTATGAGAAAATATATTTAAATTTTTTTTACATTAAATTAGATTCACAA
*
22856550 TAACAAATTA
261 TAACCAATTA
*
22856560 TTTTTTTCCTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
1 ATTTTTTCCTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
* *
22856625 ATTCCAATCCAATACATGTTTTTTCTATTTCCCAAATTAAATATTATTTGCGCAATTAATTTAAA
66 ATTCCAACCCAATACATGTTTTTTCTATTTCCCAAATTAAATATTATTTGCTCAATTAATTTAAA
*
22856690 TAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTATTAAAATTATGACAAC
131 TAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGACAAC
* * *
22856755 TTTACTATAAAAGAATCTATGAGAAAATATATTTAATTTTTTTTTACACTAAATTAGATTCACAA
196 TTTACCATAAAAGAATCTATGAGAAAATATATTTAAATTTTTTTTACATTAAATTAGATTCACAA
*
22856820 TAACTAATTA
261 TAACCAATTA
* * *
22856830 ATTTTTTCTTGTACTGGATTCAATTATATGTACTTCTTAGACTTTAACCCAACA--CTATAATTT
1 ATTTTTTCCTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
* *
22856893 ATTCCAACCCAACACATGTTTTTTTTTCTATTTTCCAAATTAAATATTATTTGCTCAATTAATTT
66 ATTCCAACCCAATACATG---TTTTTTCTATTTCCCAAATTAAATATTATTTGCTCAATTAATTT
22856958 AAATAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGAC
128 AAATAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGAC
* * * *
22857023 AACATTACCATAAAAGAATCTATGAGAAAATATATTT-AATTTTTTCTACATTAAATTGGATTTA
193 AACTTTACCATAAAAGAATCTATGAGAAAATATATTTAAATTTTTTTTACATTAAATTAGATTCA
22857087 CAATAACCAATTA
258 CAATAACCAATTA
22857100 ATTT
1 ATTT
22857104 AAATCCATTT
Statistics
Matches: 773, Mismatches: 38, Indels: 6
0.95 0.05 0.01
Matches are distributed among these distances:
268 25 0.03
270 607 0.79
271 141 0.18
ACGTcount: A:0.37, C:0.15, G:0.05, T:0.42
Consensus pattern (270 bp):
ATTTTTTCCTGTACTGGATCCAATTATATGTACTTCTTGGACTTTAACCCAACACTCTATAATTT
ATTCCAACCCAATACATGTTTTTTCTATTTCCCAAATTAAATATTATTTGCTCAATTAATTTAAA
TAAATTAATTTCTCAAATAAATAATTTTCTCAACCCAATTCTAATTCTGTTAAAATTATGACAAC
TTTACCATAAAAGAATCTATGAGAAAATATATTTAAATTTTTTTTACATTAAATTAGATTCACAA
TAACCAATTA
Found at i:22856716 original size:16 final size:18
Alignment explanation
Indices: 22856687--22856722 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
22856677 CAATTAATTT
22856687 AAATAAATTAA-TTTCTC
1 AAATAAATTAATTTTCTC
22856704 AAATAAA-TAATTTTCTC
1 AAATAAATTAATTTTCTC
22856721 AA
1 AA
22856723 CCCAATTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATAAATTAATTTTCTC
Found at i:22856987 original size:16 final size:18
Alignment explanation
Indices: 22856958--22856993 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
22856948 CAATTAATTT
22856958 AAATAAATTAA-TTTCTC
1 AAATAAATTAATTTTCTC
22856975 AAATAAA-TAATTTTCTC
1 AAATAAATTAATTTTCTC
22856992 AA
1 AA
22856994 CCCAATTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATAAATTAATTTTCTC
Found at i:22857540 original size:17 final size:17
Alignment explanation
Indices: 22857518--22857550 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22857508 AGGATATCAT
*
22857518 TAATCTCTTTGGGATAA
1 TAATCTCTTTAGGATAA
22857535 TAATCTCTTTAGGATA
1 TAATCTCTTTAGGATA
22857551 TCATTATCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.42
Consensus pattern (17 bp):
TAATCTCTTTAGGATAA
Found at i:22858761 original size:20 final size:20
Alignment explanation
Indices: 22858734--22858786 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
22858724 ATACCAATCA
*
22858734 TAAA-GTATCGATACCTTTT
1 TAAAGGTATCGATACCCTTT
* *
22858753 TCAAGGTATCAATACCCTTT
1 TAAAGGTATCGATACCCTTT
22858773 TAAAGGTATCGATA
1 TAAAGGTATCGATA
22858787 GCTTACCTCT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 3 0.11
20 25 0.89
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (20 bp):
TAAAGGTATCGATACCCTTT
Found at i:22860330 original size:15 final size:15
Alignment explanation
Indices: 22860310--22860340 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
22860300 ATTTCACTAC
*
22860310 TATGTCTTTTGTATT
1 TATGTCTTTTATATT
22860325 TATGTCTTTTATATT
1 TATGTCTTTTATATT
22860340 T
1 T
22860341 TGCATGCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.10, T:0.68
Consensus pattern (15 bp):
TATGTCTTTTATATT
Found at i:22862009 original size:37 final size:36
Alignment explanation
Indices: 22861934--22862006 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 36
22861924 ATTCCAGAAA
22861934 TAATATTATTTTAATAGTTTAATATTAAGTTTAATT
1 TAATATTATTTTAATAGTTTAATATTAAGTTTAATT
* *
22861970 TAATAATTATTTTATTAGTATT-TTATTAA-TTTAATT
1 TAAT-ATTATTTTAATAGT-TTAATATTAAGTTTAATT
22862006 T
1 T
22862007 TAAAGTGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 12 0.36
37 19 0.58
38 2 0.06
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (36 bp):
TAATATTATTTTAATAGTTTAATATTAAGTTTAATT
Found at i:22862017 original size:20 final size:18
Alignment explanation
Indices: 22861993--22862046 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 18
22861983 ATTAGTATTT
22861993 TATTAATTTAATTTTAAA
1 TATTAATTTAATTTTAAA
22862011 GTGATT-ATCTTAATTTTAAA
1 -T-ATTAAT-TTAATTTTAAA
22862031 T-TTAATTTAAGTTTTA
1 TATTAATTTAA-TTTTA
22862047 TACAAGATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
17 6 0.19
18 7 0.23
19 4 0.13
20 14 0.45
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.56
Consensus pattern (18 bp):
TATTAATTTAATTTTAAA
Found at i:22862188 original size:29 final size:29
Alignment explanation
Indices: 22862147--22862269 Score: 122
Period size: 29 Copynumber: 4.2 Consensus size: 29
22862137 CAAAAAATAA
22862147 AAAATTACATTTTAACCCCTAAACTTTTT
1 AAAATTACATTTTAACCCCTAAACTTTTT
* *
22862176 AAAATTGCATTTTAACCCCTAAA-TTTCAT
1 AAAATTACATTTTAACCCCTAAACTTT-TT
* * *
22862205 AAAATTACATTTTGACCCATAAACCTTTT
1 AAAATTACATTTTAACCCCTAAACTTTTT
* ** * * *
22862234 GAAATTATGTTTTGACCTCTAAACTTTCTC
1 AAAATTACATTTTAACCCCTAAACTTT-TT
22862264 AAAATT
1 AAAATT
22862270 TTGTTTCGGC
Statistics
Matches: 76, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
28 3 0.04
29 65 0.86
30 8 0.11
ACGTcount: A:0.37, C:0.20, G:0.04, T:0.40
Consensus pattern (29 bp):
AAAATTACATTTTAACCCCTAAACTTTTT
Found at i:22862256 original size:58 final size:59
Alignment explanation
Indices: 22862147--22862269 Score: 142
Period size: 58 Copynumber: 2.1 Consensus size: 59
22862137 CAAAAAATAA
* * *
22862147 AAAATTACATTTTAACCCCTAAACTTTTTAAAATTGCATTTTAACCCCTAAA-TTTCAT-
1 AAAATTACATTTTAACCCATAAACCTTTTAAAATTACATTTTAACCCCTAAACTTTC-TC
* * ** * *
22862205 AAAATTACATTTTGACCCATAAACCTTTTGAAATTATGTTTTGACCTCTAAACTTTCTC
1 AAAATTACATTTTAACCCATAAACCTTTTAAAATTACATTTTAACCCCTAAACTTTCTC
22862264 AAAATT
1 AAAATT
22862270 TTGTTTCGGC
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
58 44 0.81
59 10 0.19
ACGTcount: A:0.37, C:0.20, G:0.04, T:0.40
Consensus pattern (59 bp):
AAAATTACATTTTAACCCATAAACCTTTTAAAATTACATTTTAACCCCTAAACTTTCTC
Found at i:22863019 original size:16 final size:15
Alignment explanation
Indices: 22862974--22863018 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
22862964 GCCCAACTCC
*
22862974 AGCAGCAGGCCCAAT
1 AGCAGCAGGCCCAAA
22862989 AGC-GCAGGCCCAAA
1 AGCAGCAGGCCCAAA
22863003 AGGCAGCAGG-CCAAA
1 A-GCAGCAGGCCCAAA
22863018 A
1 A
22863019 AAAAAGAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 11 0.41
15 11 0.41
16 5 0.19
ACGTcount: A:0.38, C:0.31, G:0.29, T:0.02
Consensus pattern (15 bp):
AGCAGCAGGCCCAAA
Found at i:22863039 original size:9 final size:9
Alignment explanation
Indices: 22863020--22863086 Score: 79
Period size: 8 Copynumber: 7.8 Consensus size: 9
22863010 AGGCCAAAAA
22863020 AAAAGAAGAG
1 AAAA-AAGAG
22863030 AAAAAAGAG
1 AAAAAAGAG
22863039 AAAAAA-AG
1 AAAAAAGAG
22863047 AAAAAAGA-
1 AAAAAAGAG
*
22863055 AAAAGA-AG
1 AAAAAAGAG
*
22863063 AAAAAAGAA
1 AAAAAAGAG
22863072 AAAAAAG-G
1 AAAAAAGAG
22863080 AAAAAAG
1 AAAAAAG
22863087 GGTTCAATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
7 1 0.02
8 25 0.50
9 20 0.40
10 4 0.08
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (9 bp):
AAAAAAGAG
Found at i:22863057 original size:23 final size:21
Alignment explanation
Indices: 22863016--22863077 Score: 79
Period size: 23 Copynumber: 2.8 Consensus size: 21
22863006 CAGCAGGCCA
* *
22863016 AAAAAAAAGAAGAGAAAAAAG
1 AAAAAAAAGAAAAAAAAAAAG
22863037 AGAAAAAAAGAAAAAAGAAAAAG
1 A-AAAAAAAGAAAAAA-AAAAAG
22863060 AAGAAAAAAGAAAAAAAA
1 AA-AAAAAAGAAAAAAAA
22863078 GGAAAAAAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
21 1 0.03
22 15 0.42
23 20 0.56
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (21 bp):
AAAAAAAAGAAAAAAAAAAAG
Found at i:22863084 original size:7 final size:7
Alignment explanation
Indices: 22863018--22863075 Score: 55
Period size: 7 Copynumber: 7.9 Consensus size: 7
22863008 GCAGGCCAAA
22863018 AAAAAAG
1 AAAAAAG
*
22863025 AAGAGAA-
1 AA-AAAAG
*
22863032 AAAAGAG
1 AAAAAAG
22863039 AAAAAAAG
1 -AAAAAAG
22863047 AAAAAAG
1 AAAAAAG
22863054 AAAAAGAAG
1 -AAAA-AAG
22863063 AAAAAAG
1 AAAAAAG
22863070 AAAAAA
1 AAAAAA
22863076 AAGGAAAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
6 2 0.05
7 20 0.48
8 17 0.40
9 3 0.07
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:22863439 original size:16 final size:16
Alignment explanation
Indices: 22863407--22863441 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
22863397 GAAAATATTC
*
22863407 TAAAATTCTCATTTTT
1 TAAAATTCTCATGTTT
*
22863423 TAAAATTCTCGTGTTT
1 TAAAATTCTCATGTTT
22863439 TAA
1 TAA
22863442 TAGAATCACG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.51
Consensus pattern (16 bp):
TAAAATTCTCATGTTT
Found at i:22863583 original size:18 final size:18
Alignment explanation
Indices: 22863562--22863859 Score: 134
Period size: 17 Copynumber: 16.2 Consensus size: 18
22863552 AAAAATCGGG
22863562 TTTCAAAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
* *
22863580 TTTCAAAAATTCTCATG-
1 TTTCAAAAATTTTCGTGT
*
22863597 TTTCAAAAATCTTCGTGT
1 TTTCAAAAATTTTCGTGT
*
22863615 TTT-AAAAA-TTCCAGTG-
1 TTTCAAAAATTTTC-GTGT
22863631 TTTCAAAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
*
22863649 TTTCAAAAAAAATTTCCCGTGT
1 TTTC---AAAAATTT-TCGTGT
* * *
22863671 TTTTAAAAATTCTCGT-A
1 TTTCAAAAATTTTCGTGT
* * *
22863688 TATCGAAAATTTTCTTGT
1 TTTCAAAAATTTTCGTGT
* *
22863706 TTTCAAAAAAAAAAATTTCCATG-
1 TTTC------AAAAATTTTCGTGT
* *
22863729 TTTCATAAATTTCCGTGT
1 TTTCAAAAATTTTCGTGT
*
22863747 TTTCAAAAAAAAATTCTCGT-T
1 TTTC----AAAAATTTTCGTGT
22863768 TTTCAAAAATTTTCGT-T
1 TTTCAAAAATTTTCGTGT
* **
22863785 TTTAAAAAAAATTGACCGTG-
1 TTT--CAAAAATT-TTCGTGT
*
22863805 TTTCATAAATTTTCGTG-
1 TTTCAAAAATTTTCGTGT
* *
22863822 TTTCAAAAAAATCTCGTG-
1 TTTC-AAAAATTTTCGTGT
*
22863840 TTTC-AAAATTTTCGGGT
1 TTTCAAAAATTTTCGTGT
22863857 TTT
1 TTT
22863860 TTTAAAAACA
Statistics
Matches: 211, Mismatches: 42, Indels: 55
0.69 0.14 0.18
Matches are distributed among these distances:
16 14 0.07
17 78 0.37
18 55 0.26
19 14 0.07
20 6 0.03
21 13 0.06
22 17 0.08
23 4 0.02
24 10 0.05
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (18 bp):
TTTCAAAAATTTTCGTGT
Found at i:22863633 original size:34 final size:35
Alignment explanation
Indices: 22863561--22863657 Score: 162
Period size: 34 Copynumber: 2.8 Consensus size: 35
22863551 AAAAAATCGG
22863561 GTTTCAAAAATTTTCGTGTTTTCAAAAATTCTCAT
1 GTTTCAAAAATTTTCGTGTTTTCAAAAATTCTCAT
*
22863596 GTTTCAAAAATCTTCGTGTTTT-AAAAATTC-CAGT
1 GTTTCAAAAATTTTCGTGTTTTCAAAAATTCTCA-T
22863630 GTTTCAAAAATTTTCGTGTTTTCAAAAA
1 GTTTCAAAAATTTTCGTGTTTTCAAAAA
22863658 AAATTTCCCG
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
33 2 0.03
34 30 0.52
35 26 0.45
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.43
Consensus pattern (35 bp):
GTTTCAAAAATTTTCGTGTTTTCAAAAATTCTCAT
Found at i:22863661 original size:21 final size:22
Alignment explanation
Indices: 22863635--22863679 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
22863625 CCAGTGTTTC
*
22863635 AAAAATTT-TCGTGTTTTCAAA
1 AAAAATTTCCCGTGTTTTCAAA
*
22863656 AAAAATTTCCCGTGTTTTTAAA
1 AAAAATTTCCCGTGTTTTCAAA
22863678 AA
1 AA
22863680 TTCTCGTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (22 bp):
AAAAATTTCCCGTGTTTTCAAA
Found at i:22863697 original size:57 final size:56
Alignment explanation
Indices: 22863610--22863717 Score: 155
Period size: 57 Copynumber: 1.9 Consensus size: 56
22863600 CAAAAATCTT
* *
22863610 CGTGTTTTAAAAATTCCAGTGTTTCAAAAATTTTCGTGTTTTCAAAAAAAATTTCC
1 CGTGTTTTAAAAATTCCAGTATATCAAAAATTTTCGTGTTTTCAAAAAAAATTTCC
* *
22863666 CGTGTTTTTAAAAATTCTC-GTATATCGAAAATTTTCTTGTTTTCAAAAAAAA
1 CGTG-TTTTAAAAATTC-CAGTATATCAAAAATTTTCGTGTTTTCAAAAAAAA
22863718 AAATTTCCAT
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
56 4 0.09
57 41 0.89
58 1 0.02
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (56 bp):
CGTGTTTTAAAAATTCCAGTATATCAAAAATTTTCGTGTTTTCAAAAAAAATTTCC
Found at i:22863755 original size:39 final size:39
Alignment explanation
Indices: 22863694--22863859 Score: 161
Period size: 37 Copynumber: 4.4 Consensus size: 39
22863684 CGTATATCGA
* *
22863694 AAATTTTCTTGTTTTCAAAAAAAAAAATTTCCATGTTTCAT
1 AAATTTTCGTGTTTTC--AAAAAAAAATTTCCGTGTTTCAT
* * *
22863735 AAATTTCCGTGTTTTCAAAAAAAAA-TTCTCGTTTTTCAA
1 AAATTTTCGTGTTTTCAAAAAAAAATTTC-CGTGTTTCAT
*
22863774 AAATTTTCGT-TTTT--AAAAAAAATTGACCGTGTTTCAT
1 AAATTTTCGTGTTTTCAAAAAAAAATT-TCCGTGTTTCAT
*
22863811 AAATTTTCGTG-TTTC--AAAAAAATCT-CGTGTTTCA-
1 AAATTTTCGTGTTTTCAAAAAAAAATTTCCGTGTTTCAT
*
22863845 AAATTTTCGGGTTTT
1 AAATTTTCGTGTTTT
22863860 TTTAAAAACA
Statistics
Matches: 107, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
34 10 0.09
35 12 0.11
36 8 0.07
37 30 0.28
38 8 0.07
39 25 0.23
41 14 0.13
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (39 bp):
AAATTTTCGTGTTTTCAAAAAAAAATTTCCGTGTTTCAT
Found at i:22863786 original size:37 final size:37
Alignment explanation
Indices: 22863675--22863853 Score: 138
Period size: 37 Copynumber: 4.8 Consensus size: 37
22863665 CCGTGTTTTT
* * *
22863675 AAAAATTCTCGTATATCGAAAATTTTCTTGTTTTCAAAAAA
1 AAAAATTCTCGTGTTTCAAAAATTTTC--GTTTTC--AAAA
* * *
22863716 AAAAATT-TCCATGTTTCATAAATTTCCGTGTTTTCAAAA
1 AAAAATTCT-CGTGTTTCAAAAATTTTC--GTTTTCAAAA
* *
22863755 AAAAATTCTCGTTTTTCAAAAATTTTCGTTTT-TAAA
1 AAAAATTCTCGTGTTTCAAAAATTTTCGTTTTCAAAA
*
22863791 AAAAATTGAC-CGTGTTTCATAAATTTTCGTGTTTC--AA
1 AAAAATT--CTCGTGTTTCAAAAATTTTCGT-TTTCAAAA
22863828 AAAAA-TCTCGTGTTTC-AAAATTTTCG
1 AAAAATTCTCGTGTTTCAAAAATTTTCG
22863854 GGTTTTTTTA
Statistics
Matches: 116, Mismatches: 15, Indels: 21
0.76 0.10 0.14
Matches are distributed among these distances:
34 10 0.09
35 8 0.07
36 11 0.09
37 30 0.26
38 4 0.03
39 25 0.22
40 2 0.02
41 26 0.22
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.41
Consensus pattern (37 bp):
AAAAATTCTCGTGTTTCAAAAATTTTCGTTTTCAAAA
Found at i:22863844 original size:72 final size:72
Alignment explanation
Indices: 22863713--22863919 Score: 203
Period size: 72 Copynumber: 2.8 Consensus size: 72
22863703 TGTTTTCAAA
* * *
22863713 AAAAAAAATTTCCATGTTTCATAAATTTCCGTGTTTTCAAAAAAAAATTCTCGTTTTTCAAAAAT
1 AAAAAAAA-TTCCGTGTTTCATAAATTTTCGTG-TTTC--AAAAAAA-TCTCGTGTTTCAAAAAT
22863778 TTTC-G-TTTTT
61 TTTCGGTTTTTT
22863788 AAAAAAAATTGACCGTGTTTCATAAATTTTCGTGTTTCAAAAAAATCTCGTGTTTC-AAAATTTT
1 AAAAAAAATT--CCGTGTTTCATAAATTTTCGTGTTTCAAAAAAATCTCGTGTTTCAAAAATTTT
22863852 CGGGTTTTTTT
64 C-GG-TTTTTT
* * * *
22863863 AAAAACAATT-CGTGTTTC-TAAAATTCTCGTATTTTAAAAAAA--TCGTGTTTTCAAAAA
1 AAAAAAAATTCCGTGTTTCAT-AAATTTTCGTGTTTCAAAAAAATCTCGTG-TTTCAAAAA
22863920 AAGAAAAAGT
Statistics
Matches: 116, Mismatches: 7, Indels: 21
0.81 0.05 0.15
Matches are distributed among these distances:
70 5 0.04
71 14 0.12
72 41 0.35
73 8 0.07
74 2 0.02
75 26 0.22
76 20 0.17
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.42
Consensus pattern (72 bp):
AAAAAAAATTCCGTGTTTCATAAATTTTCGTGTTTCAAAAAAATCTCGTGTTTCAAAAATTTTCG
GTTTTTT
Found at i:22863867 original size:37 final size:33
Alignment explanation
Indices: 22863753--22863918 Score: 145
Period size: 37 Copynumber: 4.6 Consensus size: 33
22863743 GTGTTTTCAA
* *
22863753 AAAAAAATTCTCGTTTTTCAAAAATTTTCGTTTTTA
1 AAAAAAA-T-TCGTGTTTC-AAAATTTTCGTTTTTT
* *
22863789 AAAAAAATTGACCGTGTTTCATAAATTTTCGTGTTTC
1 AAAAAAATT---CGTGTTTCA-AAATTTTCGTTTTTT
22863826 AAAAAAATCTCGTGTTTCAAAATTTTCGGGTTTTTTT
1 AAAAAAAT-TCGTGTTTCAAAATTTTC--G-TTTTTT
* *
22863863 AAAAACAATTCGTGTTTCTAAAATTCTCGTATTTT
1 AAAAA-AATTCGTGTTTC-AAAATTTTCGTTTTTT
22863898 AAAAAAA-TCGTGTTTTCAAAA
1 AAAAAAATTCGTG-TTTCAAAA
22863919 AAAGAAAAAG
Statistics
Matches: 112, Mismatches: 7, Indels: 25
0.78 0.05 0.17
Matches are distributed among these distances:
33 9 0.08
34 15 0.13
35 20 0.18
36 10 0.09
37 46 0.41
38 12 0.11
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.42
Consensus pattern (33 bp):
AAAAAAATTCGTGTTTCAAAATTTTCGTTTTTT
Found at i:22863908 original size:16 final size:17
Alignment explanation
Indices: 22863889--22863921 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
22863879 TCTAAAATTC
22863889 TCGTATTTT-AAAAAAA
1 TCGTATTTTCAAAAAAA
*
22863905 TCGTGTTTTCAAAAAAA
1 TCGTATTTTCAAAAAAA
22863922 GAAAAAGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.36
Consensus pattern (17 bp):
TCGTATTTTCAAAAAAA
Found at i:22877962 original size:12 final size:12
Alignment explanation
Indices: 22877945--22877974 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
22877935 TATTCAAGAA
22877945 TTTTCTCTTGAG
1 TTTTCTCTTGAG
22877957 TTTTCTCTTGAG
1 TTTTCTCTTGAG
22877969 TTTTCT
1 TTTTCT
22877975 TTAGAAGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.07, C:0.17, G:0.13, T:0.63
Consensus pattern (12 bp):
TTTTCTCTTGAG
Found at i:22879313 original size:23 final size:23
Alignment explanation
Indices: 22879287--22879341 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 23
22879277 TGCGGAACAA
*
22879287 TCACTTTCAAATGCACCGCAGTG
1 TCACTTTCAAATGCACCGAAGTG
* **
22879310 TCACTATCAGTTGCACCGAAGTG
1 TCACTTTCAAATGCACCGAAGTG
*
22879333 CCACTTTCA
1 TCACTTTCA
22879342 CTTATTTGCA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.27
Consensus pattern (23 bp):
TCACTTTCAAATGCACCGAAGTG
Found at i:22879396 original size:28 final size:27
Alignment explanation
Indices: 22879320--22879393 Score: 105
Period size: 27 Copynumber: 2.7 Consensus size: 27
22879310 TCACTATCAG
*
22879320 TTGCACCGAAGTGCCACTTTCACTTAT
1 TTGCATCGAAGTGCCACTTTCACTTAT
*
22879347 TTGCATCAAAGTGCCACTTTCACTT-T
1 TTGCATCGAAGTGCCACTTTCACTTAT
*
22879373 ATTGCATCGAAGTACCACTTT
1 -TTGCATCGAAGTGCCACTTT
22879394 TCATTCATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 1 0.02
27 41 0.98
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.35
Consensus pattern (27 bp):
TTGCATCGAAGTGCCACTTTCACTTAT
Found at i:22884679 original size:15 final size:15
Alignment explanation
Indices: 22884659--22884688 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
22884649 TTAATACTAT
22884659 TGACAAGAAAGAAAA
1 TGACAAGAAAGAAAA
22884674 TGACAAGAAAGAAAA
1 TGACAAGAAAGAAAA
22884689 AAGGTAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.07, G:0.20, T:0.07
Consensus pattern (15 bp):
TGACAAGAAAGAAAA
Found at i:22891082 original size:20 final size:22
Alignment explanation
Indices: 22891057--22891096 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
22891047 GTAGCGCTAT
22891057 TAGGT-GTCTCA-TCTAATGTC
1 TAGGTGGTCTCATTCTAATGTC
*
22891077 TAGGTGGTCTTATTCTAATG
1 TAGGTGGTCTCATTCTAATG
22891097 AGGTTTGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 5 0.29
22 7 0.41
ACGTcount: A:0.20, C:0.15, G:0.23, T:0.42
Consensus pattern (22 bp):
TAGGTGGTCTCATTCTAATGTC
Found at i:22896020 original size:12 final size:13
Alignment explanation
Indices: 22895994--22896025 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
22895984 CTAAACCCAA
22895994 TTTA-CTATTGAC
1 TTTAGCTATTGAC
22896006 TTTAGCTATTG-C
1 TTTAGCTATTGAC
22896018 TTTAGCTA
1 TTTAGCTA
22896026 CTTTGGTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.50
Consensus pattern (13 bp):
TTTAGCTATTGAC
Found at i:22897341 original size:20 final size:20
Alignment explanation
Indices: 22897316--22897355 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
22897306 CGAAAAATGA
*
22897316 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
22897336 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
22897356 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:22897550 original size:22 final size:24
Alignment explanation
Indices: 22897525--22897575 Score: 56
Period size: 26 Copynumber: 2.2 Consensus size: 24
22897515 TTATTTATAA
22897525 ATAAATAA-A-TCAA-ATT-AAAT
1 ATAAATAATACTCAATATTAAAAT
22897545 ATATAATAATACTCAATTATTAAAAT
1 ATA-AATAATACTCAA-TATTAAAAT
22897571 ATAAA
1 ATAAA
22897576 AGCATTGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
20 3 0.12
21 5 0.20
22 1 0.04
23 4 0.16
25 5 0.20
26 7 0.28
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (24 bp):
ATAAATAATACTCAATATTAAAAT
Found at i:22898740 original size:2 final size:2
Alignment explanation
Indices: 22898733--22898757 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
22898723 AGTGACTAAA
22898733 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
22898758 TTCTATATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:22911139 original size:23 final size:23
Alignment explanation
Indices: 22911113--22911185 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
22911103 GTTATTGATT
* *
22911113 AGTGGTAGCTTTGGCTACATTTC
1 AGTGGTAGCTTCGGCTACATATC
*
22911136 AGTGGTAGCTACGGCTACATATC
1 AGTGGTAGCTTCGGCTACATATC
*
22911159 AGTGGTAGCTTCGGCTGCATATC
1 AGTGGTAGCTTCGGCTACATATC
22911182 AGTG
1 AGTG
22911186 TGGCACTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.32
Consensus pattern (23 bp):
AGTGGTAGCTTCGGCTACATATC
Found at i:22919865 original size:27 final size:27
Alignment explanation
Indices: 22919827--22920181 Score: 310
Period size: 27 Copynumber: 13.2 Consensus size: 27
22919817 ATTCGTGGGC
* *
22919827 AAATGACCAAAATACCCCTGAAAGGTA
1 AAATTACCAAAATACCCCTGAAGGGTA
* * * *
22919854 AAATTACCAAAATATCCCTAAAAGGCA
1 AAATTACCAAAATACCCCTGAAGGGTA
* * * * *
22919881 AATTTATCGAAATACCCTTGATGGGTA
1 AAATTACCAAAATACCCCTGAAGGGTA
* * *
22919908 AAATTACAAAAATGCCCCCGAAGGGTA
1 AAATTACCAAAATACCCCTGAAGGGTA
*
22919935 AAATTACCAAAATA-CCCTCGATGGGTA
1 AAATTACCAAAATACCCCT-GAAGGGTA
* * *
22919962 AAATTATCAAAATACCCTTGATGGGTA
1 AAATTACCAAAATACCCCTGAAGGGTA
* * *
22919989 AAATTATCGAAATA-CCCTCAAAGGGTA
1 AAATTACCAAAATACCCCT-GAAGGGTA
*
22920016 AAATTACCAAAATA-CCCTCAATGGGTA
1 AAATTACCAAAATACCCCTGAA-GGGTA
* *
22920043 AAATTACTAAAATACCCCCGAAGGGTA
1 AAATTACCAAAATACCCCTGAAGGGTA
* *
22920070 AAATTACTAAAATA-CCCTCGATGGGTA
1 AAATTACCAAAATACCCCT-GAAGGGTA
* **
22920097 AAATCATGAAAATA-CCCTCGAAGGGTA
1 AAATTACCAAAATACCCCT-GAAGGGTA
* * **
22920124 AAATGACTAAAATACCCCCAAAGGGTA
1 AAATTACCAAAATACCCCTGAAGGGTA
*
22920151 AAATAACCAAAATACCCCTG--GGGTA
1 AAATTACCAAAATACCCCTGAAGGGTA
22920176 AAATTA
1 AAATTA
22920182 TCGTTTTACC
Statistics
Matches: 268, Mismatches: 53, Indels: 16
0.80 0.16 0.05
Matches are distributed among these distances:
25 10 0.04
26 11 0.04
27 236 0.88
28 11 0.04
ACGTcount: A:0.44, C:0.20, G:0.15, T:0.21
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGAAGGGTA
Found at i:22927432 original size:40 final size:40
Alignment explanation
Indices: 22927374--22927607 Score: 211
Period size: 40 Copynumber: 5.9 Consensus size: 40
22927364 AAACGCACCT
* *
22927374 AACAGAAGCTTATAAGAGCTGATCCAACTGAAACACGCCA
1 AACAGAAGCTCATAAGAGCTGATCCAACCGAAACACGCCA
* ** *
22927414 AAGAGAAGCTTGTAAGAGCTGATCCAACCGAAACATGCCA
1 AACAGAAGCTCATAAGAGCTGATCCAACCGAAACACGCCA
* * * * * ***
22927454 AAAAGAAGCTCGTAAGAGTTTATCCAACTGAAACAATTCA
1 AACAGAAGCTCATAAGAGCTGATCCAACCGAAACACGCCA
* * *
22927494 AACAGAAGCTCACAAGAGCT-AGTCCAACCGAAACATGCTA
1 AACAGAAGCTCATAAGAGCTGA-TCCAACCGAAACACGCCA
** * * *
22927534 AGTAGAAGCTCATAAGAGCTGGTCCACCCAAAACACGCC-
1 AACAGAAGCTCATAAGAGCTGATCCAACCGAAACACGCCA
* * * *
22927573 AACAGAAGCTCGTAAGAGTTGATCTACCCGAAACA
1 AACAGAAGCTCATAAGAGCTGATCCAACCGAAACA
22927608 ATCCAAAAAA
Statistics
Matches: 156, Mismatches: 36, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
39 29 0.19
40 127 0.81
ACGTcount: A:0.41, C:0.24, G:0.19, T:0.16
Consensus pattern (40 bp):
AACAGAAGCTCATAAGAGCTGATCCAACCGAAACACGCCA
Found at i:22933976 original size:51 final size:50
Alignment explanation
Indices: 22933909--22934102 Score: 219
Period size: 51 Copynumber: 3.8 Consensus size: 50
22933899 CAATGATGTT
* * *
22933909 CGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACC-TTACCATC
* * * * *
22933960 CGATACACGTAGTAGCCTGTACATAGTACTACACACGTGATCTAAACTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCT-TACCATC
* * * * *
22934011 CGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCTTACCA-TC
* *
22934061 CGGTATACGTAGTAGCCTGCACATAGTACTGCACACGTGACC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACC
22934103 ATCACTTTCA
Statistics
Matches: 117, Mismatches: 24, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
49 2 0.02
50 39 0.33
51 76 0.65
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.24
Consensus pattern (50 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCTTACCATC
Found at i:22934098 original size:101 final size:101
Alignment explanation
Indices: 22933916--22934100 Score: 291
Period size: 101 Copynumber: 1.8 Consensus size: 101
22933906 GTTCGGTTCA
* *
22933916 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTAGCCTGTA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTAGCCTGCA
22933981 CATAGTACTACACACGTGATCTAAACTATCCGGTACG
65 CATAGTACTACACACGTGATCTAAACTATCCGGTACG
* * *
22934018 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTATACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCA-TCCGATACACGTAGTAGCCTGCA
*
22934082 CATAGTACTGCACACGTGA
65 CATAGTACTACACACGTGA
22934101 CCATCACTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 4 0.05
101 38 0.50
102 34 0.45
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCTAAACTATCCGGTACG
Found at i:22936611 original size:18 final size:18
Alignment explanation
Indices: 22936588--22936622 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
22936578 ACAATATGCA
22936588 AAACTACTTTTG-TGCTTG
1 AAACTA-TTTTGATGCTTG
22936606 AAACTATTTTGATGCTT
1 AAACTATTTTGATGCTT
22936623 ATTGTTCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.46
Consensus pattern (18 bp):
AAACTATTTTGATGCTTG
Found at i:22944744 original size:16 final size:16
Alignment explanation
Indices: 22944723--22944753 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22944713 AATTAAATTA
*
22944723 AATTAATTAATTTTCC
1 AATTAAATAATTTTCC
22944739 AATTAAATAATTTTC
1 AATTAAATAATTTTC
22944754 TCAACTCAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTAAATAATTTTCC
Found at i:22953429 original size:30 final size:30
Alignment explanation
Indices: 22953393--22953453 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
22953383 AAATCTTTTC
22953393 ATATAATAGATTATAGTTGGAAGTAAACCA
1 ATATAATAGATTATAGTTGGAAGTAAACCA
22953423 ATATAATAGATTATAGTTGGAAGTAAACCA
1 ATATAATAGATTATAGTTGGAAGTAAACCA
22953453 A
1 A
22953454 CATTGTGGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.48, C:0.07, G:0.16, T:0.30
Consensus pattern (30 bp):
ATATAATAGATTATAGTTGGAAGTAAACCA
Found at i:22966425 original size:19 final size:18
Alignment explanation
Indices: 22966382--22966425 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
22966372 ATATTGTTGA
*
22966382 ATTTTT-TTATTTTAAAT
1 ATTTTTATTATTTTAAAG
*
22966399 ATTTTTATTATTTTTAAG
1 ATTTTTATTATTTTAAAG
22966417 ATTTATTAT
1 ATTT-TTAT
22966426 ATGGGTGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 6 0.26
18 13 0.57
19 4 0.17
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (18 bp):
ATTTTTATTATTTTAAAG
Found at i:22966576 original size:15 final size:16
Alignment explanation
Indices: 22966556--22966590 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
22966546 AAAAAATCCA
22966556 ATTTTATAT-TAAATT
1 ATTTTATATCTAAATT
*
22966571 ATTTTATATCTATATT
1 ATTTTATATCTAAATT
22966587 ATTT
1 ATTT
22966591 ATAATGATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (16 bp):
ATTTTATATCTAAATT
Found at i:22967048 original size:21 final size:20
Alignment explanation
Indices: 22966992--22967049 Score: 59
Period size: 19 Copynumber: 3.0 Consensus size: 20
22966982 GCTTTTTTAC
*
22966992 TATTATCTATTA-TATTATA
1 TATTATCTATAATTATTATA
*
22967011 T-TTATGT-TAATTAATTATA
1 TATTATCTATAATT-ATTATA
22967030 TATTATCTATAACTTATTAT
1 TATTATCTATAA-TTATTAT
22967050 GGTTGATTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
17 2 0.06
18 6 0.19
19 8 0.26
20 5 0.16
21 8 0.26
22 2 0.06
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (20 bp):
TATTATCTATAATTATTATA
Found at i:22973290 original size:44 final size:43
Alignment explanation
Indices: 22973107--22973864 Score: 285
Period size: 44 Copynumber: 17.5 Consensus size: 43
22973097 CATTCTGTTT
*
22973107 CACTGCAACTTC-AGGAGAATAAGACT-T-GCTTTACTTAGTCTGCTC
1 CACTGCAACTTCAAGGAG-ATAAGATTGTGGCTTTA---A-TCTGCTC
* * * *
22973152 CACTGCAACTTCAGGGAGATAAGACTAGAT-GC---GATATGCT-
1 CACTGCAACTTCAAGGAGATAAGA-TTG-TGGCTTTAATCTGCTC
* * * * * *
22973192 CTCTGCAACTTCAAAGAGATAAGATCTGAGGTTTTGATCCGCTC
1 CACTGCAACTTCAAGGAGATAAGAT-TGTGGCTTTAATCTGCTC
* *
22973236 CACTGTAACTTCAAGGAGATAGGATTGTCGGCTTTAATCTGCTC
1 CACTGCAACTTCAAGGAGATAAGATTGT-GGCTTTAATCTGCTC
* * * * *
22973280 GACTGCAACTTCAGGGAGATATGACTAGAT-GC---GATCTGCT-
1 CACTGCAACTTCAAGGAGATAAGA-TTG-TGGCTTTAATCTGCTC
* * * *
22973320 CTCTGCAACTTC-AGAGAGATAAGATCTGAGGTTTTAATCCGCTC
1 CACTGCAACTTCAAG-GAGATAAGAT-TGTGGCTTTAATCTGCTC
* * * *
22973364 CACTGCAACTTCAGGGAGATAGGATTATCGACTTTAATCTGCTC
1 CACTGCAACTTCAAGGAGATAAGATTGT-GGCTTTAATCTGCTC
* * * *
22973408 CACTGCAACTTCAGGGAGATGAGATT-TGCCATTTTCAGTCTGC-C
1 CACTGCAACTTCAAGGAGATAAGATTGTGGC--TTT-AATCTGCTC
* * *
22973452 TCACTGCAACTTC-AGGAGGATAAAACT-T-GCTTACGTAGTCTGCTC
1 -CACTGCAACTTCAAGGA-GATAAGATTGTGGCTT---TAATCTGCTC
* * * * *
22973497 CACTGCAACCTCAGGGAGATATGACTAGAT-GC---GATCTGCT-
1 CACTGCAACTTCAAGGAGATAAGA-TTG-TGGCTTTAATCTGCTC
* * * *
22973537 CTCTGCAACTTC-AGAGAGATAAGATCTGAGGTTTTAATCCGCTC
1 CACTGCAACTTCAAG-GAGATAAGAT-TGTGGCTTTAATCTGCTC
*
22973581 CACTGCAACTTC-AGGAAGATAGGATTGTCGGCTTTAATCTGCTC
1 CACTGCAACTTCAAGG-AGATAAGATTGT-GGCTTTAATCTGCTC
* * * * *
22973625 CACTGCAACTTCAGGGAGATAAAATT-TGCCATCTTCAGTCTAC-C
1 CACTGCAACTTCAAGGAGATAAGATTGTGGC-T-TT-AATCTGCTC
*
22973669 TCACTGCAACTTC-AGGAGGATAAGACT-T-GCTTATGTAATCTGCTC
1 -CACTGCAACTTCAAGGA-GATAAGATTGTGGC-T-T-TAATCTGCTC
* * * * *
22973714 CACTGCAACCTCAGGGAGATATGACTAGAT-GC---GATCTGCT-
1 CACTGCAACTTCAAGGAGATAAGA-TTG-TGGCTTTAATCTGCTC
* * * * * *
22973754 CTCTACAACTTC-AGAGAGCTAAGATCTGAGGTTTTAATCCGCTC
1 CACTGCAACTTCAAG-GAGATAAGAT-TGTGGCTTTAATCTGCTC
* * * * *
22973798 CACTGTAACTTCAGGGAGATAGGATTATCGACTTTTAATCTGCTC
1 CACTGCAACTTCAAGGAGATAAGATTGT-GGC-TTTAATCTGCTC
*
22973843 CACTGCAACTTCAGGGAGATAA
1 CACTGCAACTTCAAGGAGATAA
22973865 AACTCAATTT
Statistics
Matches: 528, Mismatches: 119, Indels: 132
0.68 0.15 0.17
Matches are distributed among these distances:
39 7 0.01
40 81 0.15
41 25 0.05
42 7 0.01
43 34 0.06
44 245 0.46
45 115 0.22
46 5 0.01
47 6 0.01
48 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (43 bp):
CACTGCAACTTCAAGGAGATAAGATTGTGGCTTTAATCTGCTC
Found at i:22973306 original size:128 final size:128
Alignment explanation
Indices: 22973145--22973427 Score: 485
Period size: 128 Copynumber: 2.2 Consensus size: 128
22973135 CTTTACTTAG
22973145 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATATGCTCTCTGCAACTTCAAAGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATATGCTCTCTGCAACTTCAAAGAG
* * * *
22973210 ATAAGATCTGAGGTTTTGATCCGCTCCACTGTAACTTCAAGGAGATAGGATTGTCGGCTTTAA
66 ATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATTATCGACTTTAA
* * * *
22973273 TCTGCTCGACTGCAACTTCAGGGAGATATGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATATGCTCTCTGCAACTTCAAAGAG
*
22973338 ATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGACTTTAA
66 ATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATTATCGACTTTAA
22973401 TCTGCTCCACTGCAACTTCAGGGAGAT
1 TCTGCTCCACTGCAACTTCAGGGAGAT
22973428 GAGATTTGCC
Statistics
Matches: 145, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
128 145 1.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (128 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATATGCTCTCTGCAACTTCAAAGAG
ATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATTATCGACTTTAA
Found at i:22973330 original size:84 final size:84
Alignment explanation
Indices: 22973227--22973864 Score: 322
Period size: 84 Copynumber: 7.4 Consensus size: 84
22973217 CTGAGGTTTT
* * * *
22973227 GATCCGCTCCACTGTAACTTCAAGGAGATAGGATTGTCGGCTTTAATCTGCTCGACTGCAACTTC
1 GATCTGCTCCACTGCAACTTC-AGGAGATAAGATTGTCGGCTTTAATCTGCTCCACTGCAACTTC
*
22973292 AGGGAGATATGACTAGATGC
65 AGGGAGATAAGACTAGATGC
* * * *
22973312 GATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTG-AGGTTTTAATCCGCTCCACTGCAACTT
1 GATCTGCTCCACTGCAACTTCAG-GAGATAAGAT-TGTCGGCTTTAATCTGCTCCACTGCAACTT
* * **
22973375 CAGGGAGATAGGATTATCGACTTT
64 CAGGGAGATAAGACTA--GA-TGC
* * * *
22973399 AATCTGCTCCACTGCAACTTCAGGGAGATGAGATT-T-GCCATTTTCAGTCTGC-CTCACTGCAA
1 GATCTGCTCCACTGCAACTTCA-GGAGATAAGATTGTCGGC--TTT-AATCTGCTC-CACTGCAA
* * * *
22973461 CTTCA-GGAGGATAAAACTTGCTTAC
61 CTTCAGGGA-GATAAGACTAG-ATGC
* * * * *
22973486 GTAGTCTGCTCCACTGCAACCTCAGGGAGATATGACTAGAT--GC---GATCTGCT-CTCTGCAA
1 G-A-TCTGCTCCACTGCAACTTCA-GGAGATAAGA-TTG-TCGGCTTTAATCTGCTCCACTGCAA
* * **
22973545 CTTCAGAGAGATAAGATCTGAGGTTTT
61 CTTCAGGGAGATAAGA-CT-A-GATGC
* * *
22973572 AATCCGCTCCACTGCAACTTCAGGAAGATAGGATTGTCGGCTTTAATCTGCTCCACTGCAACTTC
1 GATCTGCTCCACTGCAACTTCAGG-AGATAAGATTGTCGGCTTTAATCTGCTCCACTGCAACTTC
**
22973637 AGGGAGATAA-A--ATTTGC
65 AGGGAGATAAGACTAGATGC
* *** *
22973654 CATCTTCAGTCTACCTCACTGCAACTTCAGGAGGATAAGACTTG-CTTATGTAATCTGCTCCACT
1 GATC-T--G-CT--C-CACTGCAACTTCAGGA-GATAAGA-TTGTCGGCTTTAATCTGCTCCACT
* *
22973718 GCAACCTCAGGGAGATATGACTAGATGC
57 GCAACTTCAGGGAGATAAGACTAGATGC
* * * * * * *
22973746 GATCTGCT-CTCTACAACTTCAGAGAGCTAAGATCTG-AGGTTTTAATCCGCTCCACTGTAACTT
1 GATCTGCTCCACTGCAACTTCAG-GAGATAAGAT-TGTCGGCTTTAATCTGCTCCACTGCAACTT
* * **
22973809 CAGGGAGATAGGATTATCGACTTTT
64 CAGGGAGATAAGACTA--GA--TGC
*
22973834 AATCTGCTCCACTGCAACTTCAGGGAGATAA
1 GATCTGCTCCACTGCAACTTCA-GGAGATAA
22973865 AACTCAATTT
Statistics
Matches: 420, Mismatches: 82, Indels: 98
0.70 0.14 0.16
Matches are distributed among these distances:
82 6 0.01
83 8 0.02
84 154 0.37
85 22 0.05
86 9 0.02
87 20 0.05
88 61 0.15
89 124 0.30
90 6 0.01
91 2 0.00
92 8 0.02
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (84 bp):
GATCTGCTCCACTGCAACTTCAGGAGATAAGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCA
GGGAGATAAGACTAGATGC
Found at i:22973513 original size:217 final size:217
Alignment explanation
Indices: 22973270--22973866 Score: 1050
Period size: 217 Copynumber: 2.7 Consensus size: 217
22973260 TTGTCGGCTT
* *
22973270 TAATCTGCTCGACTGCAACTTCAGGGAGATATGACTAGATGCGATCTGCTCTCTGCAACTTCAGA
1 TAATCTGCTCCACTGCAACCTCAGGGAGATATGACTAGATGCGATCTGCTCTCTGCAACTTCAGA
22973335 GAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGACTTTA
66 GAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGACTTTA
* * * *
22973400 ATCTGCTCCACTGCAACTTCAGGGAGATGAGATTTGCCATTTTCAGTCTGCCTCACTGCAACTTC
131 ATCTGCTCCACTGCAACTTCAGGGAGATAAAATTTGCCATCTTCAGTCTACCTCACTGCAACTTC
22973465 AGGAGGATAAAACTTGCTTACG
196 AGGAGGATAAAACTTGCTTACG
*
22973487 TAGTCTGCTCCACTGCAACCTCAGGGAGATATGACTAGATGCGATCTGCTCTCTGCAACTTCAGA
1 TAATCTGCTCCACTGCAACCTCAGGGAGATATGACTAGATGCGATCTGCTCTCTGCAACTTCAGA
* * *
22973552 GAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATTGTCGGCTTTA
66 GAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGACTTTA
22973617 ATCTGCTCCACTGCAACTTCAGGGAGATAAAATTTGCCATCTTCAGTCTACCTCACTGCAACTTC
131 ATCTGCTCCACTGCAACTTCAGGGAGATAAAATTTGCCATCTTCAGTCTACCTCACTGCAACTTC
* *
22973682 AGGAGGATAAGACTTGCTTATG
196 AGGAGGATAAAACTTGCTTACG
*
22973704 TAATCTGCTCCACTGCAACCTCAGGGAGATATGACTAGATGCGATCTGCTCTCTACAACTTCAGA
1 TAATCTGCTCCACTGCAACCTCAGGGAGATATGACTAGATGCGATCTGCTCTCTGCAACTTCAGA
* *
22973769 GAGCTAAGATCTGAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTATCGACTTTT
66 GAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGAC-TTT
22973834 AATCTGCTCCACTGCAACTTCAGGGAGATAAAA
130 AATCTGCTCCACTGCAACTTCAGGGAGATAAAA
22973867 CTCAATTTGT
Statistics
Matches: 360, Mismatches: 19, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
217 324 0.90
218 36 0.10
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (217 bp):
TAATCTGCTCCACTGCAACCTCAGGGAGATATGACTAGATGCGATCTGCTCTCTGCAACTTCAGA
GAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGACTTTA
ATCTGCTCCACTGCAACTTCAGGGAGATAAAATTTGCCATCTTCAGTCTACCTCACTGCAACTTC
AGGAGGATAAAACTTGCTTACG
Found at i:22985415 original size:66 final size:66
Alignment explanation
Indices: 22985271--22985404 Score: 259
Period size: 66 Copynumber: 2.0 Consensus size: 66
22985261 CTCGTATAAT
22985271 AAAAAAATTAAAAGAATATCCATTTATCCAAGATTTAAGAAATCGCGGCGCAATACGTTAGGGCA
1 AAAAAAATTAAAAGAATATCCATTTATCCAAGATTTAAGAAATCGCGGCGCAATACGTTAGGGCA
22985336 C
66 C
*
22985337 AAAAAAATTAAAAGAATATCCATTTATCCAAGGTTTAAGAAATCGCGGCGCAATACGTTAGGGCA
1 AAAAAAATTAAAAGAATATCCATTTATCCAAGATTTAAGAAATCGCGGCGCAATACGTTAGGGCA
22985402 C
66 C
22985403 AA
1 AA
22985405 TTCCTTTAAA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.44, C:0.16, G:0.17, T:0.22
Consensus pattern (66 bp):
AAAAAAATTAAAAGAATATCCATTTATCCAAGATTTAAGAAATCGCGGCGCAATACGTTAGGGCA
C
Found at i:22992625 original size:19 final size:19
Alignment explanation
Indices: 22992598--22992636 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
22992588 CCATTTTTCC
*
22992598 TTCTATTTTTTTCCTATTT
1 TTCTATTTTGTTCCTATTT
* *
22992617 TTCTTTTTTGTTGCTATTT
1 TTCTATTTTGTTCCTATTT
22992636 T
1 T
22992637 GTTATTTTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.08, C:0.13, G:0.05, T:0.74
Consensus pattern (19 bp):
TTCTATTTTGTTCCTATTT
Found at i:22993395 original size:83 final size:83
Alignment explanation
Indices: 22993283--22993438 Score: 222
Period size: 83 Copynumber: 1.9 Consensus size: 83
22993273 AGATTCGTCA
* *** * *
22993283 TTGTAGCTTCAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTTGTTGTTGTGGCTTTAATCT
1 TTGTAGCTTCAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCGCCATTCTGGCTTCAATCT
22993348 GTTCCACTGCACTGCCTG
66 GTTCCACTGCACTGCCTG
* * * *
22993366 TTGTAGCTTCAATCTTTTTAATTGTAATGTCGGGGAAGCATGATTCGCCATTCTGGCTTCAATCT
1 TTGTAGCTTCAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCGCCATTCTGGCTTCAATCT
22993431 GTTCCACT
66 GTTCCACT
22993439 ACACCACCTG
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
83 63 1.00
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.39
Consensus pattern (83 bp):
TTGTAGCTTCAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCGCCATTCTGGCTTCAATCT
GTTCCACTGCACTGCCTG
Found at i:22993536 original size:100 final size:100
Alignment explanation
Indices: 22993363--22993848 Score: 693
Period size: 100 Copynumber: 4.9 Consensus size: 100
22993353 ACTGCACTGC
* * * * * * *
22993363 CTGTTGTAGCTTCAATCTTTTTAATTGTAATGTCGGGGAAGCATGATTCGCCATTCTGGCTTCAA
1 CTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAA
* *
22993428 TCTGTTCCACTACACCACCTGGGAAGTAAGATTCA
66 TCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCA
*
22993463 CTGTTGTAGCTTTAATCTTTTTAACTGCAATGTTGGGGAAGCAAGATTCGCCGTTGTGGCTTTAA
1 CTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAA
*
22993528 TCTGTTCCACCGCACCGCCTGGGAAGTAAGATTCA
66 TCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCA
* * * **
22993563 CTATTGTAGCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAATATTCATCGTTGTGGCTTTAA
1 CTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAA
* *
22993628 TCTGTTCCACTACACCGCTTGGGAAGTAAGATTCA
66 TCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCA
* * *
22993663 CTGTTGTAGCTTTAATCTTTTTAACTGCAATATCGGGGAAGCAAGATTCACTGTTGTGGCTTTAA
1 CTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAA
* * * *
22993728 TCTATTCCACTGCATCGCCTGGGAAATAAGATTCG
66 TCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCA
* * * * * *
22993763 CTGTTGTAGCTTTAATCTTTTTAGCTACAATTTTGGGGAAGCAAGATTCGCTGTTGTGGCTTCAA
1 CTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAA
22993828 TCTGTTCCACTGCACCGCCTG
66 TCTGTTCCACTGCACCGCCTG
22993849 TGAGATAAGA
Statistics
Matches: 346, Mismatches: 40, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 346 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (100 bp):
CTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAA
TCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCA
Found at i:22993802 original size:50 final size:50
Alignment explanation
Indices: 22993448--22993830 Score: 308
Period size: 50 Copynumber: 7.7 Consensus size: 50
22993438 TACACCACCT
* *
22993448 GGGAAGTAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTTG
1 GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATCTTG
* * * * ** * ** *
22993498 GGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACCGCACCGCCT-
1 GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCA-ATCTTG
* * * *
22993548 GGGAAGTAAGATTCACTATTGTAGCTTTAATCTTTTTAACTGCAATGTCG
1 GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATCTTG
* * * * ** * **
22993598 AGGAAGCAATATTCA-TCGTTGTGGCTTTAATCTGTTCCACTACACCGCTT-
1 GGGAAGCAAGATTCACT-GTTGTAGCTTTAATCTTTTTAACTGCA-ATCTTG
* * *
22993648 GGGAAGTAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATATCG
1 GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATCTTG
* * ** *
22993698 GGGAAGCAAGATTCACTGTTGTGGCTTTAATCTATTCCACTGC-ATCGCCT-
1 GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAAT--CTTG
** * * * *
22993748 GGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAGCTACAATTTTG
1 GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATCTTG
* * *
22993798 GGGAAGCAAGATTCGCTGTTGTGGCTTCAATCT
1 GGGAAGCAAGATTCACTGTTGTAGCTTTAATCT
22993831 GTTCCACTGC
Statistics
Matches: 249, Mismatches: 74, Indels: 20
0.73 0.22 0.06
Matches are distributed among these distances:
49 5 0.02
50 239 0.96
51 5 0.02
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (50 bp):
GGGAAGCAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATCTTG
Found at i:22994091 original size:44 final size:43
Alignment explanation
Indices: 22994043--22994166 Score: 176
Period size: 43 Copynumber: 2.9 Consensus size: 43
22994033 ATCTATGATT
22994043 TTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCACCATC
1 TTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCA-CATC
* * * * *
22994087 TTCAACCTATTCCACTGCTGACCAGGGAAATAGGACTCACATC
1 TTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCACATC
* *
22994130 TTCAATCTATTCCACTGCTACCTAGGGAGATAGAATT
1 TTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATT
22994167 GGTATCTTCG
Statistics
Matches: 68, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
43 34 0.50
44 34 0.50
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (43 bp):
TTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCACATC
Found at i:22994144 original size:43 final size:44
Alignment explanation
Indices: 22994043--22994164 Score: 176
Period size: 44 Copynumber: 2.8 Consensus size: 44
22994033 ATCTATGATT
* *
22994043 TTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCACCATC
1 TTCAATCTATTCCACTGCTGACCAGGGAGATAGAACTCACCATC
* * *
22994087 TTCAACCTATTCCACTGCTGACCAGGGAAATAGGACTCA-CATC
1 TTCAATCTATTCCACTGCTGACCAGGGAGATAGAACTCACCATC
22994130 TTCAATCTATTCCACTGCT-ACCTAGGGAGATAGAA
1 TTCAATCTATTCCACTGCTGACC-AGGGAGATAGAA
22994165 TTGGTATCTT
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
42 3 0.04
43 32 0.46
44 34 0.49
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (44 bp):
TTCAATCTATTCCACTGCTGACCAGGGAGATAGAACTCACCATC
Found at i:22994352 original size:88 final size:89
Alignment explanation
Indices: 22994166--22994356 Score: 212
Period size: 88 Copynumber: 2.2 Consensus size: 89
22994156 GAGATAGAAT
* * * *
22994166 TGGT-ATCTTCGATCTGCTTCGCTGTCTATGCAGAAAGGCAAGATCTGTTATCTTCAACCTACTC
1 TGGTGATCTTCGATCTACTTCACTGTCTATACAGAAAGGCAAGATCTGCTATCTTCAACCTACTC
* * *
22994230 CGCTGCAACCCAGGGAGGCAAGGC
66 CACTGCAAACCAGAGAGGCAAGGC
* * * *
22994254 TGGTG-CCTTCGATCTACTTCACTGT-TAGTACA-AGAAGGCAAGATCTGCTGTTTTCAACCTGC
1 TGGTGATCTTCGATCTACTTCACTGTCTA-TACAGA-AAGGCAAGATCTGCTATCTTCAACCTAC
* *
22994316 TCTACTGCAAACCAGAGAGGTAAGGC
64 TCCACTGCAAACCAGAGAGGCAAGGC
22994342 TGG-GATCTTCGATCT
1 TGGTGATCTTCGATCT
22994357 GCTCTGCTAC
Statistics
Matches: 85, Mismatches: 14, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
87 4 0.05
88 81 0.95
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.28
Consensus pattern (89 bp):
TGGTGATCTTCGATCTACTTCACTGTCTATACAGAAAGGCAAGATCTGCTATCTTCAACCTACTC
CACTGCAAACCAGAGAGGCAAGGC
Found at i:22994501 original size:131 final size:131
Alignment explanation
Indices: 22994347--22994823 Score: 726
Period size: 131 Copynumber: 3.6 Consensus size: 131
22994337 AAGGCTGGGA
** ** * *
22994347 TCTTCGATCTGCTCTGCTACTGCTTAGGGAGATAAGATCTGTAATTTTTAATCTATTCCACTGCT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAACCTATTCCACTACT
* *
22994412 GCCCAGGGAGATAGAACTAATGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCACT
66 GACCAGGGAGATAGGACTAATGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCACT
22994477 G
131 G
*
22994478 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAACCTATTCCACTGCT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAACCTATTCCACTACT
* ** *
22994543 AACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTC-GT
66 GACCAGGGAGATAGGACTAATGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCACT
22994607 CG
131 -G
*
22994609 TCTT-TATTCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAACCTATTCCA-TAA
1 TCTTCGA-TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAACCTATTCCACT-A
* * * *
22994672 TTGGCCAGGGAGATAGGACTTATGGCTTAAATCTGCTTCCCTACTCCTAGGGAAGATAAGATTCA
64 CTGACCAGGGAGATAGGACTAATGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCA
*
22994737 TTG
129 CTG
*
22994740 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAACCTATTTCACTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAACCTATTCCACTACT
22994805 GACCAGGGAGATAGGACTA
66 GACCAGGGAGATAGGACTA
22994824 GGGTTGTCGA
Statistics
Matches: 316, Mismatches: 24, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
130 3 0.01
131 310 0.98
132 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (131 bp):
TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTCCAACCTATTCCACTACT
GACCAGGGAGATAGGACTAATGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGATAAGATTCACT
G
Found at i:22997187 original size:22 final size:22
Alignment explanation
Indices: 22997159--22997214 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
22997149 CATTTTCATA
22997159 TTTTTTATTTTGACTT-TGATTT
1 TTTTTTATTTTG-CTTCTGATTT
22997181 TTTTTTATTTTTGCTTCTGATTT
1 TTTTTTA-TTTTGCTTCTGATTT
22997204 TATTTTT-TTTT
1 T-TTTTTATTTT
22997215 CGTTTTTTCG
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
22 14 0.45
23 12 0.39
24 5 0.16
ACGTcount: A:0.11, C:0.05, G:0.07, T:0.77
Consensus pattern (22 bp):
TTTTTTATTTTGCTTCTGATTT
Found at i:22997214 original size:23 final size:23
Alignment explanation
Indices: 22997157--22997214 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 23
22997147 ATCATTTTCA
22997157 TATTTTTTATTTTGACTTTGATTT
1 TATTTTTT-TTTTGACTTTGATTT
22997181 T-TTTTTATTTTTG-CTTCTGATTT
1 TATTTTT-TTTTTGACTT-TGATTT
22997204 TATTTTTTTTT
1 TATTTTTTTTT
22997215 CGTTTTTTCG
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
22 3 0.10
23 21 0.68
24 7 0.23
ACGTcount: A:0.12, C:0.05, G:0.07, T:0.76
Consensus pattern (23 bp):
TATTTTTTTTTTGACTTTGATTT
Found at i:23001550 original size:11 final size:11
Alignment explanation
Indices: 23001500--23001552 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
23001490 ATGAAAGTTC
23001500 TAAAATA-AAT
1 TAAAATAGAAT
23001510 TAAATATATGAAT
1 TAAA-ATA-GAAT
*
23001523 TCAAAATAGACT
1 T-AAAATAGAAT
*
23001535 CAAAATAGAAT
1 TAAAATAGAAT
23001546 TAAAATA
1 TAAAATA
23001553 ACCATTGAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
10 4 0.11
11 18 0.51
12 3 0.09
13 7 0.20
14 3 0.09
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.28
Consensus pattern (11 bp):
TAAAATAGAAT
Found at i:23005438 original size:20 final size:18
Alignment explanation
Indices: 23005397--23005442 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
23005387 CTCTTTCGCG
23005397 TTTCTTTTTTTTCTTCCC
1 TTTCTTTTTTTTCTTCCC
* *
23005415 TTTCTATTTTTCTTCTTTCT
1 TTTCT-TTTTT-TTCTTCCC
23005435 TTTCTTTT
1 TTTCTTTT
23005443 ACTTTCTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 5 0.21
19 8 0.33
20 11 0.46
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTCTTTTTTTTCTTCCC
Found at i:23008421 original size:18 final size:18
Alignment explanation
Indices: 23008400--23008539 Score: 55
Period size: 18 Copynumber: 7.8 Consensus size: 18
23008390 TTTAAAATCA
23008400 ATAAAAATTATAAAAAAT
1 ATAAAAATTATAAAAAAT
*
23008418 ATAATAATGT-TAAAAAAT
1 ATAAAAAT-TATAAAAAAT
* *
23008436 ATCATAAAATTTTTAAAAAT
1 AT-A-AAAATTATAAAAAAT
**
23008456 A-AAAATATATCATAAAATTT
1 ATAAAA-AT-T-ATAAAAAAT
* *
23008476 TTAAAAA-TA-AAAATAT
1 ATAAAAATTATAAAAAAT
* *
23008492 ATATAAA--ATAAAAAGT
1 ATAAAAATTATAAAAAAT
23008508 GCA-AAAAATTAT--AAAAT
1 --ATAAAAATTATAAAAAAT
23008525 ATAGAAAATTATAAA
1 ATA-AAAATTATAAA
23008540 TATTATTATA
Statistics
Matches: 90, Mismatches: 15, Indels: 33
0.65 0.11 0.24
Matches are distributed among these distances:
15 2 0.02
16 17 0.19
17 20 0.22
18 22 0.24
19 7 0.08
20 18 0.20
21 4 0.04
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (18 bp):
ATAAAAATTATAAAAAAT
Found at i:23008453 original size:20 final size:19
Alignment explanation
Indices: 23008400--23008456 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 19
23008390 TTTAAAATCA
* *
23008400 ATAAAAATTATAAAAA-AT
1 ATAAAATTTTTAAAAATAT
* *
23008418 ATAATAATGTTAAAAAATAT
1 ATAA-AATTTTTAAAAATAT
23008438 CATAAAATTTTTAAAAATA
1 -ATAAAATTTTTAAAAATA
23008457 AAAATATATC
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
18 4 0.13
19 8 0.27
20 14 0.47
21 4 0.13
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (19 bp):
ATAAAATTTTTAAAAATAT
Found at i:23008460 original size:28 final size:28
Alignment explanation
Indices: 23008428--23008500 Score: 132
Period size: 28 Copynumber: 2.7 Consensus size: 28
23008418 ATAATAATGT
23008428 TAAAAA-ATATCATAAAATTTTTAAAAA
1 TAAAAATATATCATAAAATTTTTAAAAA
23008455 TAAAAATATATCATAAAATTTTTAAAAA
1 TAAAAATATATCATAAAATTTTTAAAAA
23008483 TAAAAATATAT-ATAAAAT
1 TAAAAATATATCATAAAAT
23008501 AAAAAGTGCA
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
27 13 0.29
28 32 0.71
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (28 bp):
TAAAAATATATCATAAAATTTTTAAAAA
Found at i:23008600 original size:33 final size:32
Alignment explanation
Indices: 23008520--23008618 Score: 76
Period size: 33 Copynumber: 3.0 Consensus size: 32
23008510 AAAAAATTAT
*
23008520 AAAATATAGAAAATTATAAATATTATTATAG-A-TG
1 AAAA-ATA-AAAATTATAAA-AATATTA-AGAATTG
23008554 AAAAATAATAAATTATAAAAATATTAAGAATTG
1 AAAAATAA-AAATTATAAAAATATTAAGAATTG
* * * * *
23008587 AAAAAGTTAAAATTCTTAAGATAATAAGAATT
1 AAAAA-TAAAAATTATAAAAATATTAAGAATT
23008619 TTGGATTTTA
Statistics
Matches: 55, Mismatches: 6, Indels: 9
0.79 0.09 0.13
Matches are distributed among these distances:
31 2 0.04
32 8 0.15
33 39 0.71
34 6 0.11
ACGTcount: A:0.59, C:0.01, G:0.08, T:0.32
Consensus pattern (32 bp):
AAAAATAAAAATTATAAAAATATTAAGAATTG
Found at i:23008747 original size:18 final size:19
Alignment explanation
Indices: 23008696--23008750 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 19
23008686 TGAAAAAAAT
*
23008696 AAAAATTATTAAAA-TAATG
1 AAAAA-TATAAAAATTAATG
* *
23008715 AAAATTATATAAATTAA-G
1 AAAAATATAAAAATTAATG
23008733 AAAAATATAAAAATTAAT
1 AAAAATATAAAAATTAAT
23008751 ATTGATTTCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
18 22 0.76
19 7 0.24
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (19 bp):
AAAAATATAAAAATTAATG
Found at i:23011005 original size:14 final size:14
Alignment explanation
Indices: 23010982--23011029 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
23010972 AAAAATGTGA
*
23010982 TTGTTAGAATATGG
1 TTGTTGGAATATGG
* *
23010996 TTGTTGGAATCTGA
1 TTGTTGGAATATGG
* *
23011010 TTGTTGCAATAGGG
1 TTGTTGGAATATGG
23011024 TTGTTG
1 TTGTTG
23011030 AATTTTTTGG
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.21, C:0.04, G:0.31, T:0.44
Consensus pattern (14 bp):
TTGTTGGAATATGG
Found at i:23016128 original size:18 final size:18
Alignment explanation
Indices: 23016101--23016135 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
23016091 AAATACAAAG
23016101 GACTTAATAAGTGATTTA
1 GACTTAATAAGTGATTTA
*
23016119 GACTTGATAAGTGATTT
1 GACTTAATAAGTGATTT
23016136 TGTTGCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.06, G:0.20, T:0.40
Consensus pattern (18 bp):
GACTTAATAAGTGATTTA
Found at i:23025982 original size:116 final size:116
Alignment explanation
Indices: 23025773--23025990 Score: 312
Period size: 116 Copynumber: 1.9 Consensus size: 116
23025763 ATTTCTTCTG
** *
23025773 TCTTTGATTTATGTTTGCTATACTGTTGTTCAATCACTGTGTTCTAGGTTCCGTAACCCCTACTC
1 TCTTTGATTTATGTTCACTATACTGTTGTTCAATCACTGTGTTCTAGGTTCCATAACCCCTACTC
23025838 GGACTGTGGTGGGTAAGTATTCTAGAAGTTTTATGCAGTTGGGAATCATTT
66 GGACTGTGGTGGGTAAGTATTCTAGAAGTTTTATGCAGTTGGGAATCATTT
* * * * * **
23025889 TCTTTGATTTATGTTCATTATACTGTTGTTCAATCACTGTGTTTTGGGTTTCATAATCCCTGTTC
1 TCTTTGATTTATGTTCACTATACTGTTGTTCAATCACTGTGTTCTAGGTTCCATAACCCCTACTC
* *
23025954 AGG-CTGTGGTGGGTAAGTATTCTTGAAGTTTTGTGCA
66 -GGACTGTGGTGGGTAAGTATTCTAGAAGTTTTATGCA
23025991 ACTAGTAATT
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
116 87 0.98
117 2 0.02
ACGTcount: A:0.19, C:0.15, G:0.22, T:0.44
Consensus pattern (116 bp):
TCTTTGATTTATGTTCACTATACTGTTGTTCAATCACTGTGTTCTAGGTTCCATAACCCCTACTC
GGACTGTGGTGGGTAAGTATTCTAGAAGTTTTATGCAGTTGGGAATCATTT
Found at i:23026171 original size:16 final size:16
Alignment explanation
Indices: 23026150--23026181 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
23026140 TAAGTATGTG
23026150 GATTGGGGTTTTGATA
1 GATTGGGGTTTTGATA
*
23026166 GATTGGTGTTTTGATA
1 GATTGGGGTTTTGATA
23026182 CTTGGAATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.34, T:0.47
Consensus pattern (16 bp):
GATTGGGGTTTTGATA
Found at i:23032786 original size:45 final size:45
Alignment explanation
Indices: 23032666--23032827 Score: 150
Period size: 45 Copynumber: 3.6 Consensus size: 45
23032656 ATTCAAACGT
* * * * * *
23032666 GTAAGACCATAGCTGAAAGATATTGTGGCACCATGTCAGAAATGA
1 GTAAGACCATGGCTGAAAGACACTATGGCATCATATCAGAAATGA
* * *
23032711 ATAAGACCATCGTTGAAAGACACTATGGCATCATATCAGAAATGA
1 GTAAGACCATGGCTGAAAGACACTATGGCATCATATCAGAAATGA
** *
23032756 GTAAGACCATGGCTGAAAGATGCTATGGCATC--AT-GGTAAATGGGA
1 GTAAGACCATGGCTGAAAGACACTATGGCATCATATCAG-AAAT--GA
* *
23032801 CTAAGACCATGGCTGAAAGACGCTATG
1 GTAAGACCATGGCTGAAAGACACTATG
23032828 ACACCCTTTG
Statistics
Matches: 98, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
42 1 0.01
43 6 0.06
45 91 0.93
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.22
Consensus pattern (45 bp):
GTAAGACCATGGCTGAAAGACACTATGGCATCATATCAGAAATGA
Found at i:23038026 original size:28 final size:28
Alignment explanation
Indices: 23037995--23038048 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
23037985 TGGTCATTAA
23037995 AATCTAACCATTACAATATGACCGTTGG
1 AATCTAACCATTACAATATGACCGTTGG
* * * *
23038023 AATCTGACCGTTGCAATATGGCCGTT
1 AATCTAACCATTACAATATGACCGTT
23038049 TAATTTTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (28 bp):
AATCTAACCATTACAATATGACCGTTGG
Found at i:23038047 original size:14 final size:14
Alignment explanation
Indices: 23038008--23038048 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
23037998 CTAACCATTA
23038008 CAATATGACCGTTG
1 CAATATGACCGTTG
* *
23038022 GAATCTGACCGTTG
1 CAATATGACCGTTG
*
23038036 CAATATGGCCGTT
1 CAATATGACCGTT
23038049 TAATTTTTTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (14 bp):
CAATATGACCGTTG
Found at i:23051540 original size:20 final size:20
Alignment explanation
Indices: 23051469--23051555 Score: 88
Period size: 20 Copynumber: 4.2 Consensus size: 20
23051459 TTTTTAAAAT
23051469 TTTTTAAATATATAAATTTTAGAA
1 TTTTTAAA-A-AT-AATTTT-GAA
* *
23051493 TTTTCACAAAT-ATTTT-AA
1 TTTTTAAAAATAATTTTGAA
*
23051511 ATTTTAAAAATAATTTTGAA
1 TTTTTAAAAATAATTTTGAA
*
23051531 TTTTTTAAAATAATTTTGAA
1 TTTTTAAAAATAATTTTGAA
23051551 TTTTT
1 TTTTT
23051556 CTTTTTGTAA
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
18 10 0.19
19 5 0.09
20 30 0.56
22 2 0.04
23 1 0.02
24 6 0.11
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.53
Consensus pattern (20 bp):
TTTTTAAAAATAATTTTGAA
Found at i:23054323 original size:10 final size:10
Alignment explanation
Indices: 23054290--23054361 Score: 53
Period size: 10 Copynumber: 7.3 Consensus size: 10
23054280 ATTATATTTT
*
23054290 TTTTCTATACA
1 TTTT-TATATA
23054301 TTTTTATGA-A
1 TTTTTAT-ATA
23054311 TTTTTATATA
1 TTTTTATATA
*
23054321 TTTATT-TCTA
1 TTT-TTATATA
23054331 TTTTTATATA
1 TTTTTATATA
23054341 -TTTTA-ATA
1 TTTTTATATA
* *
23054349 TGTATATATA
1 TTTTTATATA
23054359 TTT
1 TTT
23054362 AACAAAAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
8 3 0.06
9 11 0.22
10 29 0.58
11 7 0.14
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (10 bp):
TTTTTATATA
Found at i:23055226 original size:16 final size:16
Alignment explanation
Indices: 23055202--23055234 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
23055192 AATAATAAAC
*
23055202 AACTTATTTAAATATT
1 AACTAATTTAAATATT
23055218 AACTAATTTAAATATT
1 AACTAATTTAAATATT
23055234 A
1 A
23055235 TTTAAATGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (16 bp):
AACTAATTTAAATATT
Found at i:23060974 original size:23 final size:24
Alignment explanation
Indices: 23060923--23060977 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
23060913 TTGAGATAAT
* *
23060923 TATATTATATTTAAATTTTTAAAA
1 TATATTAAATTCAAATTTTTAAAA
* *
23060947 AATATTAAATTCAAA-TTTTAGAA
1 TATATTAAATTCAAATTTTTAAAA
23060970 TATATTAA
1 TATATTAA
23060978 TAATATTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 14 0.54
24 12 0.46
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (24 bp):
TATATTAAATTCAAATTTTTAAAA
Found at i:23061558 original size:6 final size:6
Alignment explanation
Indices: 23061547--23061576 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
23061537 TTGTAATTAA
23061547 TTAATT TTAATT TTAATT TATAATT TTAAT
1 TTAATT TTAATT TTAATT T-TAATT TTAAT
23061577 ACTTTTTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (6 bp):
TTAATT
Found at i:23061572 original size:13 final size:12
Alignment explanation
Indices: 23061547--23061576 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
23061537 TTGTAATTAA
23061547 TTAATTTTAATT
1 TTAATTTTAATT
23061559 TTAATTTATAATT
1 TTAATTT-TAATT
23061572 TTAAT
1 TTAAT
23061577 ACTTTTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TTAATTTTAATT
Found at i:23061750 original size:17 final size:17
Alignment explanation
Indices: 23061738--23061776 Score: 60
Period size: 19 Copynumber: 2.2 Consensus size: 17
23061728 ATAGAAATTT
23061738 AAAAATTAAAGAAAGTA
1 AAAAATTAAAGAAAGTA
23061755 AAAAATTAAATAGAAAGTA
1 AAAAATT-AA-AGAAAGTA
23061774 AAA
1 AAA
23061777 GTAATTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 7 0.35
18 2 0.10
19 11 0.55
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAAATTAAAGAAAGTA
Found at i:23061771 original size:19 final size:18
Alignment explanation
Indices: 23061726--23061776 Score: 68
Period size: 17 Copynumber: 2.8 Consensus size: 18
23061716 ATTTGACAAA
* *
23061726 TAATAGAAATTTAAAAAT
1 TAATAGAAAGTAAAAAAT
23061744 TAA-AGAAAGTAAAAAAT
1 TAATAGAAAGTAAAAAAT
23061761 TAAATAGAAAGTAAAA
1 T-AATAGAAAGTAAAA
23061777 GTAATTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 13 0.45
18 5 0.17
19 11 0.38
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.24
Consensus pattern (18 bp):
TAATAGAAAGTAAAAAAT
Found at i:23062451 original size:3 final size:3
Alignment explanation
Indices: 23062443--23062489 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
23062433 TATAATATCC
23062443 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
23062490 GCTGATAACG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:23063020 original size:29 final size:27
Alignment explanation
Indices: 23062986--23063041 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 27
23062976 AGTAAAACGT
23062986 GTCCAGGTCAGCACGCTCAAGAAAAAAAC
1 GTCCAGGTCAGCACGCT-AA-AAAAAAAC
*
23063015 GTCCAGGTCAGCGCGCTAAAAAAAAAC
1 GTCCAGGTCAGCACGCTAAAAAAAAAC
23063042 TCATCCTAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 8 0.31
28 2 0.08
29 16 0.62
ACGTcount: A:0.41, C:0.27, G:0.21, T:0.11
Consensus pattern (27 bp):
GTCCAGGTCAGCACGCTAAAAAAAAAC
Found at i:23063253 original size:78 final size:74
Alignment explanation
Indices: 23063117--23063260 Score: 168
Period size: 78 Copynumber: 1.9 Consensus size: 74
23063107 GGTTTATTAA
* *
23063117 ATTAGGGTTTTGGTGTTTTATTTAATTTTAAGTGTTTATTAATTGGTGTTTTAAGGTTTTAGAAA
1 ATTAGGGTTTTGGTGTTTTATTTAATTTTAAGTGTTCATAAATTGGTGTTTTAAGGTTTT-GAAA
23063182 AATGGTTATT
65 AATGGTTATT
* *
23063192 ATTAGGGTTTTGG-GTTTTATTGTTAGGATTTTTAGTGTTCATAAATTAGG-G-TTTAGGGGTTT
1 ATTAGGGTTTTGGTGTTTTA-T-TTA--ATTTTAAGTGTTCATAAATT-GGTGTTTTA-AGGTTT
23063254 TGAAAAA
60 TGAAAAA
23063261 AAATTGATGA
Statistics
Matches: 59, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
74 6 0.10
75 14 0.24
76 3 0.05
77 10 0.17
78 24 0.41
79 2 0.03
ACGTcount: A:0.25, C:0.01, G:0.24, T:0.50
Consensus pattern (74 bp):
ATTAGGGTTTTGGTGTTTTATTTAATTTTAAGTGTTCATAAATTGGTGTTTTAAGGTTTTGAAAA
ATGGTTATT
Found at i:23063278 original size:26 final size:27
Alignment explanation
Indices: 23063248--23063315 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 27
23063238 TAGGGTTTAG
**
23063248 GGGTTTTGAAAAAAA-ATTGATGAGAT
1 GGGTTTTGAAAAAAATATTGACAAGAT
* *
23063274 GGGTTCTGAAAAATAATTTTGACAAGAT
1 GGGTTTTGAAAAA-AATATTGACAAGAT
23063302 GGGTTTTGAAAAAA
1 GGGTTTTGAAAAAA
23063316 TATCCCTACA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
26 12 0.34
27 3 0.09
28 20 0.57
ACGTcount: A:0.41, C:0.03, G:0.25, T:0.31
Consensus pattern (27 bp):
GGGTTTTGAAAAAAATATTGACAAGAT
Found at i:23070791 original size:2 final size:2
Alignment explanation
Indices: 23070784--23070808 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
23070774 ATGAGAATAC
23070784 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
23070809 AGTTCTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23075707 original size:2 final size:2
Alignment explanation
Indices: 23075667--23075695 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
23075657 TATCACAGGC
23075667 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23075696 CAAGGATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23079353 original size:16 final size:16
Alignment explanation
Indices: 23079332--23079362 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
23079322 CCAAACCTTG
23079332 TCGGCATTAAGTTATA
1 TCGGCATTAAGTTATA
23079348 TCGGCATTAAGTTAT
1 TCGGCATTAAGTTAT
23079363 CTTAATAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (16 bp):
TCGGCATTAAGTTATA
Found at i:23082965 original size:2 final size:2
Alignment explanation
Indices: 23082958--23083001 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
23082948 AGTCTGAAAG
*
23082958 AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23083000 AT
1 AT
23083002 GGATGGCATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:23089545 original size:3 final size:3
Alignment explanation
Indices: 23089537--23089600 Score: 94
Period size: 3 Copynumber: 21.3 Consensus size: 3
23089527 GATTGTATCC
* *
23089537 TTA TTA TTA -TA TTA TTTA TTA TTT TTA TCA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
23089582 TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA T
23089601 ACATATACAC
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
2 2 0.04
3 50 0.91
4 3 0.05
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:23089631 original size:25 final size:24
Alignment explanation
Indices: 23089594--23089654 Score: 59
Period size: 25 Copynumber: 2.5 Consensus size: 24
23089584 ATTATTATTA
* *
23089594 TTATTATACATATACACGCATTTTT
1 TTATAATACATATACACACA-TTTT
* * *
23089619 TTATAATATATATGCATACATTTT
1 TTATAATACATATACACACATTTT
23089643 TTATAAATACAT
1 TTAT-AATACAT
23089655 GTGCATATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
24 8 0.28
25 21 0.72
ACGTcount: A:0.38, C:0.11, G:0.03, T:0.48
Consensus pattern (24 bp):
TTATAATACATATACACACATTTT
Found at i:23089635 original size:21 final size:22
Alignment explanation
Indices: 23089597--23089677 Score: 58
Period size: 21 Copynumber: 3.6 Consensus size: 22
23089587 ATTATTATTA
* *
23089597 TTATACATATACACGCATTTTT
1 TTATACATATATATGCATTTTT
23089619 TTATA-ATATATATGCATACATTTT
1 TTATACATATATATGCAT---TTTT
* * * *
23089643 TTATAAATACATGTGCA-TATT
1 TTATACATATATATGCATTTTT
*
23089664 TTATATATATATAT
1 TTATACATATATAT
23089678 TTTATTATTA
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
21 24 0.51
22 5 0.11
24 9 0.19
25 9 0.19
ACGTcount: A:0.37, C:0.10, G:0.05, T:0.48
Consensus pattern (22 bp):
TTATACATATATATGCATTTTT
Found at i:23089642 original size:23 final size:22
Alignment explanation
Indices: 23089615--23089677 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 22
23089605 ATACACGCAT
23089615 TTTTTTATAATATATATGCATACA
1 TTTTTTATAATATATATG--TACA
* *
23089639 TTTTTTATAA-ATACATGTGCA
1 TTTTTTATAATATATATGTACA
*
23089660 TATTTTATATATATATAT
1 TTTTTTATA-ATATATAT
23089678 TTTATTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
21 11 0.33
22 1 0.03
23 11 0.33
24 10 0.30
ACGTcount: A:0.37, C:0.06, G:0.05, T:0.52
Consensus pattern (22 bp):
TTTTTTATAATATATATGTACA
Found at i:23089659 original size:25 final size:24
Alignment explanation
Indices: 23089615--23089661 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
23089605 ATACACGCAT
*
23089615 TTTTTTATAATATATATGCATACA
1 TTTTTTATAATACATATGCATACA
*
23089639 TTTTTTATAAATACATGTGCATA
1 TTTTTTAT-AATACATATGCATA
23089662 TTTTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.49
Consensus pattern (24 bp):
TTTTTTATAATACATATGCATACA
Found at i:23090201 original size:35 final size:35
Alignment explanation
Indices: 23090162--23090231 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
23090152 AATAATCGAG
23090162 AATATATTTTTTAAAACACATAAATAAAAAATCAT
1 AATATATTTTTTAAAACACATAAATAAAAAATCAT
* *
23090197 AATATTTTTTTTAAAACGCATAAATAAAAAATCAT
1 AATATATTTTTTAAAACACATAAATAAAAAATCAT
23090232 TTTCGAGAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.54, C:0.09, G:0.01, T:0.36
Consensus pattern (35 bp):
AATATATTTTTTAAAACACATAAATAAAAAATCAT
Found at i:23097208 original size:27 final size:26
Alignment explanation
Indices: 23097172--23097235 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 26
23097162 ACACTTTTCG
* *
23097172 TATTCATTTTTGAGCCAGTAGTCTTT
1 TATTCTTTTTTGAGCAAGTAGTCTTT
* * * *
23097198 TCATTCTTTTTCGAGTAATTATTCTTT
1 T-ATTCTTTTTTGAGCAAGTAGTCTTT
23097225 TATTCTTTTTT
1 TATTCTTTTTT
23097236 CCACATCATT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
26 10 0.33
27 20 0.67
ACGTcount: A:0.17, C:0.14, G:0.09, T:0.59
Consensus pattern (26 bp):
TATTCTTTTTTGAGCAAGTAGTCTTT
Found at i:23102166 original size:50 final size:50
Alignment explanation
Indices: 23102098--23102215 Score: 130
Period size: 50 Copynumber: 2.4 Consensus size: 50
23102088 AAGACACCAG
* * * * * *
23102098 TCTTATCGCCTTGACGTTGTAATGGAATAGATTGAAGCCACAATGGCGAA
1 TCTTATCTCCCTGGCGTTGCAACGGAACAGATTGAAGCCACAATGGCGAA
* * * *
23102148 TCTTA-CTTCCCTGGCGTTGCAGCGGAGCAGATTGAAGCCACAATTGTGAA
1 TCTTATC-TCCCTGGCGTTGCAACGGAACAGATTGAAGCCACAATGGCGAA
23102198 TCTTATCTCCCTGGCGTT
1 TCTTATCTCCCTGGCGTT
23102216 AAGGCTTGGA
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
49 1 0.02
50 54 0.96
51 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.30
Consensus pattern (50 bp):
TCTTATCTCCCTGGCGTTGCAACGGAACAGATTGAAGCCACAATGGCGAA
Found at i:23102341 original size:50 final size:50
Alignment explanation
Indices: 23102284--23102568 Score: 219
Period size: 50 Copynumber: 5.7 Consensus size: 50
23102274 TTTGGCATTA
* *
23102284 TAGTGGAATAGATTGAAGCCACAACGGCGAATTTTACCTCCCTGGCGGTG
1 TAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTG
* * * * * *** * ****
23102334 TAGTGGAACAGATTAAAGTCACGACGGTGAATTTTGTTTCCCCGATATTG
1 TAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTG
* ** * *
23102384 CAGTTAAATAGATTGAAGCCACAACGGCGAATCTTACCTCCCTAGCGGTG
1 TAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTG
* * * *** * * **
23102434 TAGTGGAACAGATTGAAGTCACGACGGTGAATCTTGTTTCCCCGACATTG
1 TAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTG
* ** * * *
23102484 CAGTTAAATAGATTGAAGCCACAACGGCGAATCTTACCTTCCTGGAGGTG
1 TAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTG
* * *
23102534 TAGTGGAACAGATTGAAGTCACGACGACGAATCTT
1 TAGTGGAACAGATTGAAGCCACAACGGCGAATCTT
23102569 GTTTCCCTAA
Statistics
Matches: 166, Mismatches: 69, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
50 166 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.26
Consensus pattern (50 bp):
TAGTGGAACAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTG
Found at i:23102463 original size:100 final size:100
Alignment explanation
Indices: 23102290--23102601 Score: 507
Period size: 100 Copynumber: 3.1 Consensus size: 100
23102280 ATTATAGTGG
* *
23102290 AATAGATTGAAGCCACAACGGCGAATTTTACCTCCCTGGCGGTGTAGTGGAACAGATTAAAGTCA
1 AATAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTGTAGTGGAACAGATTGAAGTCA
* *
23102355 CGACGGTGAATTTTGTTTCCCCGATATTGCAGTTA
66 CGACGGTGAATCTTGTTTCCCCGACATTGCAGTTA
*
23102390 AATAGATTGAAGCCACAACGGCGAATCTTACCTCCCTAGCGGTGTAGTGGAACAGATTGAAGTCA
1 AATAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTGTAGTGGAACAGATTGAAGTCA
23102455 CGACGGTGAATCTTGTTTCCCCGACATTGCAGTTA
66 CGACGGTGAATCTTGTTTCCCCGACATTGCAGTTA
* *
23102490 AATAGATTGAAGCCACAACGGCGAATCTTACCTTCCTGGAGGTGTAGTGGAACAGATTGAAGTCA
1 AATAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTGTAGTGGAACAGATTGAAGTCA
** **
23102555 CGACGACGAATCTTGTTTCCCTAACATTGCAGTTA
66 CGACGGTGAATCTTGTTTCCCCGACATTGCAGTTA
* *
23102590 AACAAATTGAAG
1 AATAGATTGAAG
23102602 AAAATAATCT
Statistics
Matches: 198, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 198 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (100 bp):
AATAGATTGAAGCCACAACGGCGAATCTTACCTCCCTGGCGGTGTAGTGGAACAGATTGAAGTCA
CGACGGTGAATCTTGTTTCCCCGACATTGCAGTTA
Found at i:23102599 original size:50 final size:50
Alignment explanation
Indices: 23102340--23102601 Score: 197
Period size: 50 Copynumber: 5.2 Consensus size: 50
23102330 GGTGTAGTGG
* * * * *
23102340 AACAGATTAAAGTCACGACGGTGAATTTTGTTTCCCCGATATTGCAGTTA
1 AACAGATTGAAGTCACGACGGCGAATCTTGTTTCCCTGACATTGCAGTTA
* * * *** ** * **
23102390 AATAGATTGAAGCCACAACGGCGAATCTTACCTCCCT-AGCGGTGTAGTGG
1 AACAGATTGAAGTCACGACGGCGAATCTTGTTTCCCTGA-CATTGCAGTTA
* *
23102440 AACAGATTGAAGTCACGACGGTGAATCTTGTTTCCCCGACATTGCAGTTA
1 AACAGATTGAAGTCACGACGGCGAATCTTGTTTCCCTGACATTGCAGTTA
* * * ** ** * **
23102490 AATAGATTGAAGCCACAACGGCGAATCTTACCTT-CCTGGA-GGTGTAGTGG
1 AACAGATTGAAGTCACGACGGCGAATCTT-GTTTCCCT-GACATTGCAGTTA
* *
23102540 AACAGATTGAAGTCACGACGACGAATCTTGTTTCCCTAACATTGCAGTTA
1 AACAGATTGAAGTCACGACGGCGAATCTTGTTTCCCTGACATTGCAGTTA
*
23102590 AACAAATTGAAG
1 AACAGATTGAAG
23102602 AAAATAATCT
Statistics
Matches: 152, Mismatches: 54, Indels: 12
0.70 0.25 0.06
Matches are distributed among these distances:
49 4 0.03
50 143 0.94
51 5 0.03
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.26
Consensus pattern (50 bp):
AACAGATTGAAGTCACGACGGCGAATCTTGTTTCCCTGACATTGCAGTTA
Found at i:23102828 original size:41 final size:41
Alignment explanation
Indices: 23102726--23102832 Score: 126
Period size: 42 Copynumber: 2.6 Consensus size: 41
23102716 TAAAGAAAAT
* * ** *
23102726 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAACATC
1 AATCTTATCTCTCTGAAGTTGCAGAAGAGCAGATCAACATC
*
23102767 AGATCTTATCTCTTTGAAGTTGCAGAAGAGCAGATCAA-ATCC
1 A-ATCTTATCTCTCTGAAGTTGCAGAAGAGCAGATCAACAT-C
*
23102809 AATCTTATCTCTCTAAAGTTGCAG
1 AATCTTATCTCTCTGAAGTTGCAG
23102833 TGGAGTAAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
41 24 0.43
42 32 0.57
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (41 bp):
AATCTTATCTCTCTGAAGTTGCAGAAGAGCAGATCAACATC
Found at i:23102865 original size:127 final size:122
Alignment explanation
Indices: 23102592--23102925 Score: 417
Period size: 127 Copynumber: 2.7 Consensus size: 122
23102582 TGCAGTTAAA
*
23102592 CAAATTGAAGAAAATAA-TCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATCAGATCTTA
1 CAAATTGAAGAAAATAATTC-TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCAGATCTTA
* * * * * *
23102656 TCTCTCTAAAGTTGC--AGATC-GCATTCAGTCTTATCTCCCTGAAGTTGAAGTGAAG
65 TCTCTATGAAGTTGCAGAGAGCAGCATCCAATCTTATCTCCCTAAAGTTGAAGTGAAG
* * * *
23102711 CAGATTAAAGAAAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAACATCAGATCTTAT
1 CAAATTGAAGAAAATAATTCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCAGATCTTAT
* * * *
23102776 CTCTTTGAAGTTGCAGAAGAGCAGATCAAATCCAATCTTATCTCTCTAAAGTTGCAGTGGAG
66 CTCTATGAAGTTGCAG-AGAGCAG--C--ATCCAATCTTATCTCCCTAAAGTTGAAGTGAAG
* *
23102838 TAAATTGAAGAAAATAATTCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAACAGATCTTAT
1 CAAATTGAAGAAAATAATTCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCAGATCTTAT
23102903 CTCTATGAA-TTGCAGTAGAGCAG
66 CTCTATGAAGTTGCAG-AGAGCAG
23102926 GTTGCGTCAA
Statistics
Matches: 184, Mismatches: 22, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
119 70 0.38
120 1 0.01
122 4 0.02
123 1 0.01
125 1 0.01
126 13 0.07
127 94 0.51
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.29
Consensus pattern (122 bp):
CAAATTGAAGAAAATAATTCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCAGATCTTAT
CTCTATGAAGTTGCAGAGAGCAGCATCCAATCTTATCTCCCTAAAGTTGAAGTGAAG
Found at i:23104234 original size:3 final size:3
Alignment explanation
Indices: 23104226--23104276 Score: 61
Period size: 3 Copynumber: 17.3 Consensus size: 3
23104216 GATTGTATCC
* *
23104226 TTA TTA TTA -TA TTA TTTA TTA TTT TTA TCA TTA TTA TTA TT- TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
23104270 TTA TTA T
1 TTA TTA T
23104277 ACATATATAC
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 4 0.10
3 34 0.83
4 3 0.07
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Done.