Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62681010
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1052928 characters in sequence are not A, C, G, or T
File 77 of 210
Found at i:23104246 original size:12 final size:11
Alignment explanation
Indices: 23104226--23104277 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
23104216 GATTGTATCC
23104226 TTATTAT-TATA
1 TTATTATAT-TA
23104237 TTATT-TATTA
1 TTATTATATTA
*
23104247 TTTTTATCATTA
1 TTATTAT-ATTA
*
23104259 TTATTATTTTA
1 TTATTATATTA
23104270 TTATTATA
1 TTATTATA
23104278 CATATATACA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
10 7 0.21
11 17 0.50
12 10 0.29
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (11 bp):
TTATTATATTA
Found at i:23104329 original size:25 final size:24
Alignment explanation
Indices: 23104293--23104339 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
23104283 ATACACGCAT
*
23104293 TTTTTTATAATATATATGCATACA
1 TTTTTTATAATACATATGCATACA
*
23104317 TTTTTTATAAATACATGTGCATA
1 TTTTTTAT-AATACATATGCATA
23104340 TTTTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.49
Consensus pattern (24 bp):
TTTTTTATAATACATATGCATACA
Found at i:23104682 original size:21 final size:21
Alignment explanation
Indices: 23104658--23104697 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
23104648 CTGTTTTGTT
* *
23104658 CTGTTTTTTCTTTTCTTTTTA
1 CTGTTTTTTATTTTATTTTTA
23104679 CTGTTTTTTATTTTATTTT
1 CTGTTTTTTATTTTATTTT
23104698 CTTCCTTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.07, C:0.10, G:0.05, T:0.78
Consensus pattern (21 bp):
CTGTTTTTTATTTTATTTTTA
Found at i:23105263 original size:20 final size:20
Alignment explanation
Indices: 23105235--23105274 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
23105225 ATTTAAACTC
* *
23105235 CATTTATTTTTCAATTTAAT
1 CATTAATTTGTCAATTTAAT
*
23105255 CATTAATTTGTCATTTTAAT
1 CATTAATTTGTCAATTTAAT
23105275 TTTATAGTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.30, C:0.10, G:0.03, T:0.57
Consensus pattern (20 bp):
CATTAATTTGTCAATTTAAT
Found at i:23105303 original size:9 final size:9
Alignment explanation
Indices: 23105291--23105391 Score: 51
Period size: 9 Copynumber: 10.6 Consensus size: 9
23105281 GTTTTTTTAA
23105291 TATTAATAT
1 TATTAATAT
*
23105300 TATTGATAT
1 TATTAATAT
* *
23105309 TGATTGTATCCT
1 T-ATT-AAT-AT
23105321 TATTATTATAT
1 TATTA--ATAT
*
23105332 TATTTATTAT
1 TA-TTAATAT
*
23105342 T-TTTATCAT
1 TATTAAT-AT
*
23105351 TATTATTAT
1 TATTAATAT
*
23105360 TATTATTAT
1 TATTAATAT
*
23105369 TATTATTAT
1 TATTAATAT
*
23105378 TATTATTAT
1 TATTAATAT
23105387 TATTA
1 TATTA
23105392 TACATATACA
Statistics
Matches: 74, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
8 3 0.04
9 46 0.62
10 10 0.14
11 8 0.11
12 7 0.09
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (9 bp):
TATTAATAT
Found at i:23105328 original size:3 final size:3
Alignment explanation
Indices: 23105320--23105392 Score: 112
Period size: 3 Copynumber: 24.3 Consensus size: 3
23105310 GATTGTATCC
* *
23105320 TTA TTA TTA -TA TTA TTTA TTA TTT TTA TCA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
23105365 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
23105393 ACATATACAC
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
2 2 0.03
3 59 0.92
4 3 0.05
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:23108759 original size:24 final size:25
Alignment explanation
Indices: 23108702--23108760 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
23108692 ATGCATGCAT
* *
23108702 ATATATAAAAACAATGACAATAATA
1 ATATAGAAAAACAATGACAAAAATA
* *
23108727 ATA-AGAAAAATAATGATAAAAATA
1 ATATAGAAAAACAATGACAAAAATA
23108751 ATATA-AAAAA
1 ATATAGAAAAA
23108761 GACTAAATTG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 25 0.86
25 4 0.14
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.22
Consensus pattern (25 bp):
ATATAGAAAAACAATGACAAAAATA
Found at i:23112599 original size:5 final size:5
Alignment explanation
Indices: 23112591--23112619 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
23112581 GAGACAGGAC
23112591 AGAAG AGAAG AGAAG AGAAG AGAAG AGAA
1 AGAAG AGAAG AGAAG AGAAG AGAAG AGAA
23112620 AAGACAGGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (5 bp):
AGAAG
Found at i:23116976 original size:3 final size:3
Alignment explanation
Indices: 23116970--23117061 Score: 71
Period size: 3 Copynumber: 29.7 Consensus size: 3
23116960 GTTAATTACT
* **
23116970 TTA TTA TTA TTT TCTA TTA TTA TTA TTA TTA TTA CCA TTA TTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
23117016 TTAA TCA TTA TTA GTT- TTA TTT TTC TT- TTA TTTA TTCA TTA TTA TT
1 TT-A TTA TTA TTA -TTA TTA TTA TTA TTA TTA -TTA TT-A TTA TTA TT
23117062 GTGATAATAT
Statistics
Matches: 72, Mismatches: 10, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
2 4 0.06
3 56 0.78
4 12 0.17
ACGTcount: A:0.27, C:0.07, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:23117089 original size:15 final size:16
Alignment explanation
Indices: 23117069--23117102 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
23117059 ATTGTGATAA
23117069 TATATTA-ATTAGTTT
1 TATATTATATTAGTTT
*
23117084 TATATTATTTTAGTTT
1 TATATTATATTAGTTT
23117100 TAT
1 TAT
23117103 TTTTATTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (16 bp):
TATATTATATTAGTTT
Found at i:23119786 original size:20 final size:20
Alignment explanation
Indices: 23119757--23119800 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
23119747 GCCTAGGTCG
*
23119757 TGTGGAGGTCGACATGCCCA
1 TGTGGAGGTCGACACGCCCA
* *
23119777 TGTGGTGGTCTACACGCCCA
1 TGTGGAGGTCGACACGCCCA
23119797 TGTG
1 TGTG
23119801 CAAGCTGCAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.16, C:0.25, G:0.34, T:0.25
Consensus pattern (20 bp):
TGTGGAGGTCGACACGCCCA
Found at i:23133051 original size:27 final size:27
Alignment explanation
Indices: 23133019--23133087 Score: 95
Period size: 26 Copynumber: 2.6 Consensus size: 27
23133009 TATTTTTTTA
23133019 TTTTTTATTTTTTAATTTTAAAATACT
1 TTTTTTATTTTTTAATTTTAAAATACT
* *
23133046 TTTTTTA-TTTTTATTTTTAAAATATT
1 TTTTTTATTTTTTAATTTTAAAATACT
*
23133072 TTTTTGTATTTATTAA
1 TTTTT-TATTTTTTAA
23133088 AAAATAGGCC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 22 0.61
27 9 0.25
28 5 0.14
ACGTcount: A:0.28, C:0.01, G:0.01, T:0.70
Consensus pattern (27 bp):
TTTTTTATTTTTTAATTTTAAAATACT
Found at i:23134618 original size:19 final size:19
Alignment explanation
Indices: 23134561--23134619 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 19
23134551 TATTCTTTAT
* *
23134561 AATTCTTTTTTGAAATTTTAG
1 AATT-TTTTTT-AATTTTTTG
* * *
23134582 AATTTTTATAAATATTTTG
1 AATTTTTTTTAATTTTTTG
23134601 AATTTTTTTTAATTTTTTG
1 AATTTTTTTTAATTTTTTG
23134620 GAAGAGATTA
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
19 22 0.73
20 4 0.13
21 4 0.13
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.63
Consensus pattern (19 bp):
AATTTTTTTTAATTTTTTG
Found at i:23135476 original size:19 final size:18
Alignment explanation
Indices: 23135454--23135494 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
23135444 TTTTTATACA
**
23135454 TTTTTAAATAAATTTTAAT
1 TTTTTAAA-AAAAATTAAT
23135473 TTTTTAAAAAAAATTAAT
1 TTTTTAAAAAAAATTAAT
23135491 TTTT
1 TTTT
23135495 ATGAATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTTTAAAAAAAATTAAT
Found at i:23138086 original size:4 final size:4
Alignment explanation
Indices: 23138077--23138127 Score: 93
Period size: 4 Copynumber: 12.8 Consensus size: 4
23138067 GAAGAGATAG
*
23138077 AGAT AGAT AGAT AGAT AGAT ATAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
23138125 AGA
1 AGA
23138128 GAGAGAGAGA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.25
Consensus pattern (4 bp):
AGAT
Found at i:23138132 original size:2 final size:2
Alignment explanation
Indices: 23138125--23138172 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
23138115 ATAGATAGAT
23138125 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
23138167 AG AG AG
1 AG AG AG
23138173 TTTTATATTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:23141245 original size:21 final size:21
Alignment explanation
Indices: 23141221--23141284 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
23141211 TTTTAGTAGC
23141221 TGAATTATGAATAGTTAGATT
1 TGAATTATGAATAGTTAGATT
* **
23141242 TGAA-AAT-TTTAG-TAG--T
1 TGAATTATGAATAGTTAGATT
23141258 TGAATTATGAATAGTTAGATT
1 TGAATTATGAATAGTTAGATT
23141279 TGAATT
1 TGAATT
23141285 CCAGTTTAGT
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
16 5 0.16
17 2 0.06
18 6 0.19
19 6 0.19
20 2 0.06
21 11 0.34
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.44
Consensus pattern (21 bp):
TGAATTATGAATAGTTAGATT
Found at i:23141280 original size:37 final size:37
Alignment explanation
Indices: 23141200--23141282 Score: 148
Period size: 37 Copynumber: 2.2 Consensus size: 37
23141190 CTTCGATGGG
*
23141200 AGATTTAAAAATTTTAGTAGCTGAATTATGAATAGTT
1 AGATTTGAAAATTTTAGTAGCTGAATTATGAATAGTT
*
23141237 AGATTTGAAAATTTTAGTAGTTGAATTATGAATAGTT
1 AGATTTGAAAATTTTAGTAGCTGAATTATGAATAGTT
23141274 AGATTTGAA
1 AGATTTGAA
23141283 TTCCAGTTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.40, C:0.01, G:0.18, T:0.41
Consensus pattern (37 bp):
AGATTTGAAAATTTTAGTAGCTGAATTATGAATAGTT
Found at i:23143778 original size:24 final size:24
Alignment explanation
Indices: 23143751--23143798 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
23143741 TTATACTACA
23143751 CTTAATAACTTA-TGTAATAATTCT
1 CTTAATAACTTACT-TAATAATTCT
*
23143775 CTTAATAATTTACTTAATAATTCT
1 CTTAATAACTTACTTAATAATTCT
23143799 TTCTTCAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 21 0.95
25 1 0.05
ACGTcount: A:0.38, C:0.12, G:0.02, T:0.48
Consensus pattern (24 bp):
CTTAATAACTTACTTAATAATTCT
Found at i:23143780 original size:12 final size:13
Alignment explanation
Indices: 23143765--23143798 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
23143755 ATAACTTATG
23143765 TAATAATTCT-CT
1 TAATAATTCTACT
23143777 TAATAATT-TACT
1 TAATAATTCTACT
23143789 TAATAATTCT
1 TAATAATTCT
23143799 TTCTTCAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 1 0.05
12 18 0.90
13 1 0.05
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (13 bp):
TAATAATTCTACT
Found at i:23145308 original size:108 final size:108
Alignment explanation
Indices: 23145119--23145327 Score: 409
Period size: 108 Copynumber: 1.9 Consensus size: 108
23145109 ACTGATTGAC
*
23145119 ATATCTAAATCAAGGTTACTAAGGTCTTTTAAATAGGCTTAGATTAGAGTTCTAATCATACTAAA
1 ATATCTAAATCAAGGTTACTAAGGCCTTTTAAATAGGCTTAGATTAGAGTTCTAATCATACTAAA
23145184 ATATCCATGAAATAATTAGAGTCCAACTGGGAGAATATCTAAA
66 ATATCCATGAAATAATTAGAGTCCAACTGGGAGAATATCTAAA
23145227 ATATCTAAATCAAGGTTACTAAGGCCTTTTAAATAGGCTTAGATTAGAGTTCTAATCATACTAAA
1 ATATCTAAATCAAGGTTACTAAGGCCTTTTAAATAGGCTTAGATTAGAGTTCTAATCATACTAAA
23145292 ATATCCATGAAATAATTAGAGTCCAACTGGGAGAAT
66 ATATCCATGAAATAATTAGAGTCCAACTGGGAGAAT
23145328 CAGTCTTGCT
Statistics
Matches: 100, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
108 100 1.00
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.31
Consensus pattern (108 bp):
ATATCTAAATCAAGGTTACTAAGGCCTTTTAAATAGGCTTAGATTAGAGTTCTAATCATACTAAA
ATATCCATGAAATAATTAGAGTCCAACTGGGAGAATATCTAAA
Found at i:23151744 original size:4 final size:4
Alignment explanation
Indices: 23151726--23151761 Score: 56
Period size: 4 Copynumber: 9.0 Consensus size: 4
23151716 ACGACAATTG
23151726 TAAA TAAGA -AAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAA-A TAAA TAAA TAAA TAAA TAAA TAAA TAAA
23151762 AATTAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 1 0.03
4 28 0.93
5 1 0.03
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (4 bp):
TAAA
Found at i:23151852 original size:16 final size:15
Alignment explanation
Indices: 23151828--23151874 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
23151818 ACGAAAACAT
*
23151828 AAATCAACAAACAAAA
1 AAATAAACAAA-AAAA
23151844 AAATAAAC-AAAAAA
1 AAATAAACAAAAAAA
* *
23151858 ATATAAAGAAAAAAA
1 AAATAAACAAAAAAA
23151873 AA
1 AA
23151875 GTGCATAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
14 10 0.38
15 9 0.35
16 7 0.27
ACGTcount: A:0.81, C:0.09, G:0.02, T:0.09
Consensus pattern (15 bp):
AAATAAACAAAAAAA
Found at i:23151853 original size:12 final size:12
Alignment explanation
Indices: 23151836--23151860 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23151826 ATAAATCAAC
23151836 AAACAAAAAAAT
1 AAACAAAAAAAT
23151848 AAACAAAAAAAT
1 AAACAAAAAAAT
23151860 A
1 A
23151861 TAAAGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (12 bp):
AAACAAAAAAAT
Found at i:23151857 original size:14 final size:14
Alignment explanation
Indices: 23151840--23151874 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
23151830 ATCAACAAAC
23151840 AAAAAAATAAACAA
1 AAAAAAATAAACAA
* *
23151854 AAAAATATAAAGAA
1 AAAAAAATAAACAA
23151868 AAAAAAA
1 AAAAAAA
23151875 GTGCATAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.86, C:0.03, G:0.03, T:0.09
Consensus pattern (14 bp):
AAAAAAATAAACAA
Found at i:23152102 original size:20 final size:20
Alignment explanation
Indices: 23152074--23152120 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
23152064 GATTGCATAT
*
23152074 ATATATATAGAAATTATAAA
1 ATATATATAGAAAGTATAAA
* *
23152094 ATATGTATAGAAAGTATAAT
1 ATATATATAGAAAGTATAAA
23152114 ATATATA
1 ATATATA
23152121 CGTACATATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (20 bp):
ATATATATAGAAAGTATAAA
Found at i:23152104 original size:102 final size:106
Alignment explanation
Indices: 23151969--23152182 Score: 319
Period size: 102 Copynumber: 2.0 Consensus size: 106
23151959 ATAAAGAAAA
*
23151969 ATATACATATAGAAATTATAAAAATATGGATAGAAAGTATAATATATATACGTACATATATATGT
1 ATATACATATAGAAATTATAAAAATATGGATAGAAAGTATAATATATATACGTACATATATATAT
* * * *
23152034 AA-GT-T-AATATATATAGACCATAAAGATAATGATTGCAT
66 AAGGTATAAATATATATAAACCATAAAAATAATAATTACAT
* *
23152072 ATATATATATAGAAATTAT-AAAATATGTATAGAAAGTATAATATATATACGTACATATATATAT
1 ATATACATATAGAAATTATAAAAATATGGATAGAAAGTATAATATATATACGTACATATATATAT
*
23152136 AAGGTAATAAATATATATAAATCATAAAAATAATAATTACAT
66 AAGGT-ATAAATATATATAAACCATAAAAATAATAATTACAT
23152178 ATATA
1 ATATA
23152183 AACTTAAAAA
Statistics
Matches: 99, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
102 45 0.45
103 20 0.20
105 1 0.01
106 33 0.33
ACGTcount: A:0.52, C:0.05, G:0.09, T:0.34
Consensus pattern (106 bp):
ATATACATATAGAAATTATAAAAATATGGATAGAAAGTATAATATATATACGTACATATATATAT
AAGGTATAAATATATATAAACCATAAAAATAATAATTACAT
Found at i:23152149 original size:16 final size:18
Alignment explanation
Indices: 23152111--23152154 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 18
23152101 TAGAAAGTAT
23152111 AATATATATACGTACATA
1 AATATATATACGTACATA
* *
23152129 TATATATA-AGGTA-ATA
1 AATATATATACGTACATA
23152145 AATATATATA
1 AATATATATA
23152155 AATCATAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 10 0.45
17 5 0.23
18 7 0.32
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.36
Consensus pattern (18 bp):
AATATATATACGTACATA
Found at i:23153772 original size:15 final size:16
Alignment explanation
Indices: 23153746--23153778 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
23153736 ATTTGGACCC
23153746 TATTTTTCTATTTATT
1 TATTTTTCTATTTATT
*
23153762 TATTTTT-TATTTGTT
1 TATTTTTCTATTTATT
23153777 TA
1 TA
23153779 CTAAGAGCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (16 bp):
TATTTTTCTATTTATT
Found at i:23154031 original size:45 final size:43
Alignment explanation
Indices: 23153982--23154266 Score: 190
Period size: 44 Copynumber: 6.6 Consensus size: 43
23153972 TAATCCACTC
23153982 CACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCT
1 CACTGCAACTTCAGGGAGATAAGATTTGCCAT-TTCAGTCTG-CT
* * *
23154027 CACTGCAACTTCA-GGAGGATAAGACTTGCTTATTT-GGTCTGCT
1 CACTGCAACTTCAGGGA-GATAAGATTTGC-CATTTCAGTCTGCT
* * * *
23154070 CCACTGCAACTTCAGGGAGATAAGACTAG--ATGTGA-TCTGCT
1 -CACTGCAACTTCAGGGAGATAAGATTTGCCATTTCAGTCTGCT
** * * **** * * * *
23154111 CTTTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCC
1 CACTGCAACTTCAGGGAGATAAGATTTGCCATTTCAGTCTGCT
* * * *
23154154 CACTGCAACTTCAGCGAGATAGGA-TTACCGACTTT-AATCTGCT
1 CACTGCAACTTCAGGGAGATAAGATTTGCC-A-TTTCAGTCTGCT
*
23154197 CCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCT
1 -CACTGCAACTTCAGGGAGATAAGATTTGCCAT-TTCAGTCTG-CT
*
23154243 CACTGCAACTTTA-GGAGGATAAGA
1 CACTGCAACTTCAGGGA-GATAAGA
23154267 CTTGTCTGTT
Statistics
Matches: 189, Mismatches: 35, Indels: 32
0.74 0.14 0.12
Matches are distributed among these distances:
40 21 0.11
41 9 0.05
42 5 0.03
43 33 0.17
44 61 0.32
45 56 0.30
46 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (43 bp):
CACTGCAACTTCAGGGAGATAAGATTTGCCATTTCAGTCTGCT
Found at i:23154082 original size:44 final size:45
Alignment explanation
Indices: 23153979--23154270 Score: 195
Period size: 45 Copynumber: 6.7 Consensus size: 45
23153969 CTTTAATCCA
*
23153979 CTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTG
* *
23154024 C-CTCACTGCAACTTCA-GGAGGATAAGACTTGCTTAT-TT-GGTCTG
1 CTC-CACTGCAACTTCAGGGA-GATAAGACTTGC-CATCTTCAGTCTG
* * *
23154068 CTCCACTGCAACTTCAGGGAGATAAGACTAG--AT-GTGA-TCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTG
** * * * * * *
23154109 CT-CTTTGCAACTTCAGAGAGATAAGATCTAAG--GT-TTTAATCCG
1 CTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCCATCTTCAGTCTG
* * * * *
23154152 C-CCACTGCAACTTCAGCGAGATAGGA-TTACCGA-CTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCC-ATCTTCAGTCTG
* *
23154195 CTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTG
*
23154240 C-CTCACTGCAACTTTA-GGAGGATAAGACTTG
1 CTC-CACTGCAACTTCAGGGA-GATAAGACTTG
23154271 TCTGTTATCT
Statistics
Matches: 198, Mismatches: 30, Indels: 38
0.74 0.11 0.14
Matches are distributed among these distances:
40 21 0.11
41 12 0.06
42 5 0.03
43 33 0.17
44 60 0.30
45 65 0.33
46 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (45 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTG
Found at i:23164414 original size:4 final size:4
Alignment explanation
Indices: 23164398--23164429 Score: 55
Period size: 4 Copynumber: 7.8 Consensus size: 4
23164388 AATTGTATAG
23164398 AAAT AAGAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAA
23164430 ATTTAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:23164726 original size:16 final size:16
Alignment explanation
Indices: 23164690--23164732 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
23164680 ATAGAAAGTA
23164690 TAATATATATATACGT
1 TAATATATATATACGT
* * *
23164706 AAATATATATGTATGT
1 TAATATATATATACGT
*
23164722 TAATAAATATA
1 TAATATATATA
23164733 GACCATAAAG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.42
Consensus pattern (16 bp):
TAATATATATATACGT
Found at i:23164821 original size:20 final size:20
Alignment explanation
Indices: 23164792--23164842 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
23164782 GTATAGAAAG
23164792 TATA-ATATATAT-ACGTACA
1 TATATATATATATAACGTA-A
*
23164811 TATATATATATATAAGGTAA
1 TATATATATATATAACGTAA
*
23164831 TAAATATATATA
1 TATATATATATA
23164843 AATTATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 4 0.14
20 20 0.71
21 4 0.14
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (20 bp):
TATATATATATATAACGTAA
Found at i:23166157 original size:15 final size:16
Alignment explanation
Indices: 23166131--23166163 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
23166121 ATTTGGACCC
23166131 TATTTTTCTATTTATT
1 TATTTTTCTATTTATT
*
23166147 TATTTTT-TATTTGTT
1 TATTTTTCTATTTATT
23166162 TA
1 TA
23166164 CTATGAGCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (16 bp):
TATTTTTCTATTTATT
Found at i:23169377 original size:15 final size:15
Alignment explanation
Indices: 23169354--23169387 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
23169344 TTACTTTTTG
* *
23169354 TGATGTAAATATAAA
1 TGATATAAATAAAAA
23169369 TGATATAAATAAAAA
1 TGATATAAATAAAAA
23169384 TGAT
1 TGAT
23169388 CATTTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32
Consensus pattern (15 bp):
TGATATAAATAAAAA
Found at i:23171184 original size:21 final size:21
Alignment explanation
Indices: 23171145--23171184 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
23171135 TTGCCACTAA
* *
23171145 TCGTTATACAACCTGTCCAAG
1 TCGTGATACAACCTATCCAAG
*
23171166 TCGTGATACAACTTATCCA
1 TCGTGATACAACCTATCCA
23171185 TAGCCTTTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (21 bp):
TCGTGATACAACCTATCCAAG
Found at i:23175024 original size:39 final size:39
Alignment explanation
Indices: 23174952--23175027 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
23174942 AGGTTTTGTG
* *
23174952 GGGGTATAGAATAATTATCCTATTGGTAATGATAAAACA
1 GGGGTACAGAATAATTATCCTATTCGTAATGATAAAACA
* * * *
23174991 GGGGTACATAATAATTATCTTATTCTTATTGATAAAA
1 GGGGTACAGAATAATTATCCTATTCGTAATGATAAAA
23175028 TAGAACGAGC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 31 1.00
ACGTcount: A:0.39, C:0.08, G:0.17, T:0.36
Consensus pattern (39 bp):
GGGGTACAGAATAATTATCCTATTCGTAATGATAAAACA
Found at i:23187552 original size:19 final size:19
Alignment explanation
Indices: 23187543--23187580 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 19
23187533 TTTATCTTTG
23187543 TCTTTAATTTTAATTTTAA
1 TCTTTAATTTTAATTTTAA
23187562 TCTTTAATTTTAATGTTTA
1 TCTTTAATTTTAAT-TTTA
23187581 TTTTATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (19 bp):
TCTTTAATTTTAATTTTAA
Found at i:23187569 original size:13 final size:12
Alignment explanation
Indices: 23187479--23187585 Score: 60
Period size: 12 Copynumber: 8.8 Consensus size: 12
23187469 AAATTTCTAA
23187479 TTAATTTTAAAATT
1 TTAATTTT--AATT
* *
23187493 TTTATTTTTATT
1 TTAATTTTAATT
*
23187505 TT--TTTTAGTT
1 TTAATTTTAATT
* *
23187515 TTAGTTTTAGTT
1 TTAATTTTAATT
* *
23187527 TTCATTTTTATCT
1 TTAATTTTAAT-T
*
23187540 TT-GTCTTTAATT
1 TTAAT-TTTAATT
23187552 TTAATTTTAATCT
1 TTAATTTTAAT-T
23187565 TTAATTTTAATGT
1 TTAATTTTAAT-T
23187578 TT-ATTTTA
1 TTAATTTTA
23187586 TTTATGTTTA
Statistics
Matches: 75, Mismatches: 12, Indels: 14
0.74 0.12 0.14
Matches are distributed among these distances:
10 8 0.11
12 36 0.48
13 24 0.32
14 7 0.09
ACGTcount: A:0.23, C:0.04, G:0.05, T:0.68
Consensus pattern (12 bp):
TTAATTTTAATT
Found at i:23187573 original size:25 final size:24
Alignment explanation
Indices: 23187493--23187585 Score: 77
Period size: 25 Copynumber: 3.9 Consensus size: 24
23187483 TTTTAAAATT
* *
23187493 TTTA-TTTTTATTTT-TTTTAGT-
1 TTTAGTTTTAATTTTATTTTAATC
* *
23187514 TTTAGTTTTAGTTTTCATTTTTATC
1 TTTAGTTTTAATTTT-ATTTTAATC
23187539 TTT-GTCTTTAATTTTAATTTTAATC
1 TTTAGT-TTTAATTTT-ATTTTAATC
*
23187564 TTTAATTTTAATGTTTATTTTA
1 TTTAGTTTTAAT-TTTATTTTA
23187586 TTTATGTTTA
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
21 4 0.07
22 8 0.14
24 7 0.12
25 34 0.60
26 4 0.07
ACGTcount: A:0.20, C:0.04, G:0.05, T:0.70
Consensus pattern (24 bp):
TTTAGTTTTAATTTTATTTTAATC
Found at i:23199397 original size:17 final size:19
Alignment explanation
Indices: 23199362--23199398 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
23199352 AAGTTAAGTC
*
23199362 TGAGATTCATTAGATCGTA
1 TGAGATTCATTAGAGCGTA
23199381 TGAGATT-A-TAGAGCGTA
1 TGAGATTCATTAGAGCGTA
23199398 T
1 T
23199399 CGGGCCGGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 9 0.53
18 1 0.06
19 7 0.41
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (19 bp):
TGAGATTCATTAGAGCGTA
Found at i:23201059 original size:43 final size:43
Alignment explanation
Indices: 23200987--23201114 Score: 143
Period size: 43 Copynumber: 3.0 Consensus size: 43
23200977 CTGATAAGTG
* * *
23200987 TTTTCGGGTAAGACCACGTCTGGGCCGATGGCATCGACTTGTA
1 TTTTCGAGTAAGACCACTTCTGGGACGATGGCATCGACTTGTA
* * * *
23201030 TTTTCGTGTAAGACCACTTTTGGGACGATGACATTGACTTGTA
1 TTTTCGAGTAAGACCACTTCTGGGACGATGGCATCGACTTGTA
* *
23201073 TTTTCAAGTAAGACC-CTGTCTGGGAC-AGTGGCATCGATTTGT
1 TTTTCGAGTAAGACCACT-TCTGGGACGA-TGGCATCGACTTGT
23201115 GATTATATGT
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
42 3 0.04
43 68 0.96
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.33
Consensus pattern (43 bp):
TTTTCGAGTAAGACCACTTCTGGGACGATGGCATCGACTTGTA
Found at i:23210266 original size:17 final size:18
Alignment explanation
Indices: 23210232--23210268 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
23210222 ACCTGTGTGG
*
23210232 CATGCTCGTGTGGGCCCA
1 CATGCCCGTGTGGGCCCA
23210250 CATGCCCGTGT-GGCCCA
1 CATGCCCGTGTGGGCCCA
23210267 CA
1 CA
23210269 CACCCAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.14, C:0.38, G:0.30, T:0.19
Consensus pattern (18 bp):
CATGCCCGTGTGGGCCCA
Found at i:23213038 original size:35 final size:35
Alignment explanation
Indices: 23212984--23213098 Score: 104
Period size: 35 Copynumber: 3.2 Consensus size: 35
23212974 TAGTCGAATA
*
23212984 AGCCCAGCTCTACTTGGATATACCAACGGTATTTG
1 AGCCCAGCTCTAGTTGGATATACCAACGGTATTTG
* * * * * **
23213019 TGCCCAGCGCTAGTCGGATAAACCTACAAATAATTAGTG
1 AGCCCAGCTCTAGTTGGATATACCAAC-GGT-ATT--TG
*
23213058 AGTCCAGCTCTAGTTGGATATACCAACGGTATTTG
1 AGCCCAGCTCTAGTTGGATATACCAACGGTATTTG
*
23213093 CGCCCA
1 AGCCCA
23213099 TTGTTAGTTG
Statistics
Matches: 58, Mismatches: 18, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
35 27 0.47
36 1 0.02
37 6 0.10
38 1 0.02
39 23 0.40
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (35 bp):
AGCCCAGCTCTAGTTGGATATACCAACGGTATTTG
Found at i:23213112 original size:74 final size:74
Alignment explanation
Indices: 23212987--23213130 Score: 207
Period size: 74 Copynumber: 1.9 Consensus size: 74
23212977 TCGAATAAGC
* *
23212987 CCAGCTCTACTTGGATATACCAACGGTATTTGTGCCCAGCGCTAGTCGGATAAACCTACAAATAA
1 CCAGCTCTACTTGGATATACCAACGGTATTTGCGCCCAGCGCTAGTCGGATAAACCGACAAATAA
*
23213052 TTAGTGAGT
66 ATAGTGAGT
* ** * * *
23213061 CCAGCTCTAGTTGGATATACCAACGGTATTTGCGCCCATTGTTAGTTGGATAAACCGACGAATAA
1 CCAGCTCTACTTGGATATACCAACGGTATTTGCGCCCAGCGCTAGTCGGATAAACCGACAAATAA
23213126 ATAGT
66 ATAGT
23213131 TATTTATTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
74 61 1.00
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (74 bp):
CCAGCTCTACTTGGATATACCAACGGTATTTGCGCCCAGCGCTAGTCGGATAAACCGACAAATAA
ATAGTGAGT
Found at i:23215632 original size:98 final size:98
Alignment explanation
Indices: 23215458--23215654 Score: 358
Period size: 98 Copynumber: 2.0 Consensus size: 98
23215448 GTACAATAAA
*
23215458 ACTTTAAAAGAACATCCACTTATCCAAAATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAAATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
23215523 CCTCTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
*
23215556 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAAATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
23215621 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
23215654 A
1 A
23215655 TTATTTTTAA
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAAATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:23217000 original size:19 final size:19
Alignment explanation
Indices: 23216976--23217088 Score: 172
Period size: 19 Copynumber: 5.8 Consensus size: 19
23216966 AATCATATAT
23216976 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
23216995 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
23217014 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
23217035 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
23217054 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
23217073 TCTAAGATTTCATATC
1 TCTAAGATTGCATATC
23217089 CTCAAAAATT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
19 66 0.78
21 19 0.22
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:23217041 original size:40 final size:38
Alignment explanation
Indices: 23216953--23217088 Score: 173
Period size: 40 Copynumber: 3.4 Consensus size: 38
23216943 AAATTAAATC
*
23216953 TCTAAGATTACAAAATCATATATTCTAAGATTGCATATCATA
1 TCTAAGATTAC-ATATC--ATA-TCTAAGATTGCATATCATA
*
23216995 TCTAAGATTATATATCATATCTAAGATTGCATATATCATA
1 TCTAAGATTACATATCATATCTAAGATTGC--ATATCATA
* *
23217035 TCTAAGATTGCATATCATATCTAGGATTGCATATCATA
1 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
*
23217073 TCTAAGATTTCATATC
1 TCTAAGATTACATATC
23217089 CTCAAAAATT
Statistics
Matches: 86, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
38 34 0.40
39 3 0.03
40 35 0.41
41 4 0.05
42 10 0.12
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (38 bp):
TCTAAGATTACATATCATATCTAAGATTGCATATCATA
Found at i:23217043 original size:59 final size:59
Alignment explanation
Indices: 23216976--23217087 Score: 188
Period size: 59 Copynumber: 1.9 Consensus size: 59
23216966 AATCATATAT
*
23216976 TCTAAGATTGCATATCATATCTAAGATTATATATCATATCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTACATATCATATCTAAGATTGCATATATCATA
* * *
23217035 TCTAAGATTGCATATCATATCTAGGATTGCATATCATATCTAAGATTTCATAT
1 TCTAAGATTGCATATCATATCTAAGATTACATATCATATCTAAGATTGCATAT
23217088 CCTCAAAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 49 1.00
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (59 bp):
TCTAAGATTGCATATCATATCTAAGATTACATATCATATCTAAGATTGCATATATCATA
Found at i:23217087 original size:38 final size:38
Alignment explanation
Indices: 23216968--23217088 Score: 176
Period size: 40 Copynumber: 3.2 Consensus size: 38
23216958 GATTACAAAA
23216968 TCATAT-AT-TCTAAGATTGCATATCATATCTAAGATT
1 TCATATCATATCTAAGATTGCATATCATATCTAAGATT
23217004 AT-ATATCATATCTAAGATTGCATATATCATATCTAAGATT
1 -TCATATCATATCTAAGATTGC--ATATCATATCTAAGATT
* *
23217044 GCATATCATATCTAGGATTGCATATCATATCTAAGATT
1 TCATATCATATCTAAGATTGCATATCATATCTAAGATT
23217082 TCATATC
1 TCATATC
23217089 CTCAAAAATT
Statistics
Matches: 76, Mismatches: 3, Indels: 9
0.86 0.03 0.10
Matches are distributed among these distances:
36 4 0.05
37 3 0.04
38 34 0.45
40 35 0.46
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (38 bp):
TCATATCATATCTAAGATTGCATATCATATCTAAGATT
Found at i:23219135 original size:2 final size:2
Alignment explanation
Indices: 23219128--23219181 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
23219118 TAGTTTATCC
23219128 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23219170 AT AT AT AT AT AT
1 AT AT AT AT AT AT
23219182 TCATCATTTC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23224513 original size:1 final size:1
Alignment explanation
Indices: 23224507--23224535 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
23224497 TGGGGCTTTG
23224507 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
23224536 GAGATAAGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:23225752 original size:16 final size:17
Alignment explanation
Indices: 23225720--23225757 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
23225710 CCTAAAATAT
23225720 TATTTAATAATTAAAAA
1 TATTTAATAATTAAAAA
*
23225737 TATTTAATTA-TAAAAA
1 TATTTAATAATTAAAAA
23225753 T-TTTA
1 TATTTA
23225758 CTACTTCTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 7 0.35
17 9 0.45
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TATTTAATAATTAAAAA
Found at i:23225870 original size:24 final size:26
Alignment explanation
Indices: 23225843--23225890 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
23225833 TAGGGTTTTT
23225843 TACTAAAAT-AT-TACAAAAAAAAAA
1 TACTAAAATAATATACAAAAAAAAAA
23225867 TACTAAAATAATATACAAAAAAAA
1 TACTAAAATAATATACAAAAAAAA
23225891 GATCATTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 9 0.41
25 2 0.09
26 11 0.50
ACGTcount: A:0.71, C:0.08, G:0.00, T:0.21
Consensus pattern (26 bp):
TACTAAAATAATATACAAAAAAAAAA
Found at i:23226173 original size:155 final size:155
Alignment explanation
Indices: 23226002--23226283 Score: 460
Period size: 157 Copynumber: 1.8 Consensus size: 155
23225992 ATTTCAGCCT
** * * *
23226002 TTTGTTCGTATTTTTTTCC-C-GATTTTATTACTTTTAAAAAATATATTATTTTTTAGTTTTATT
1 TTTGTTCGTATTTTTTTCCTCAGATTTTATTACTTAAAAAAAAAATACTATTTTCTAGTTTTATT
*
23226065 ATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTTATTGAAAT
66 ATTTTACATTATTTTAGTACATTATGTTTG-AATGTATTCATTTAGTGTG-GTTTTTATTGAAAT
23226130 TTTAAAAAAAAACCCTTATTTCGTCCC
129 TTTAAAAAAAAACCCTTATTTCGTCCC
23226157 TTTGTTCGTATTTTTTTCCTCAGATTTTATTACTTAAAAAAAAAATACTATTTTCTAGTTTTATT
1 TTTGTTCGTATTTTTTTCCTCAGATTTTATTACTTAAAAAAAAAATACTATTTTCTAGTTTTATT
* *
23226222 ATTTTGCATTATTTTAGTACATTATGTTTGAATGTATTCTTTTAGTGTGGTTTTTATTGAAA
66 ATTTTACATTATTTTAGTACATTATGTTTGAATGTATTCATTTAGTGTGGTTTTTATTGAAA
23226284 GTAATAAAAT
Statistics
Matches: 117, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
155 31 0.26
156 19 0.16
157 67 0.57
ACGTcount: A:0.27, C:0.09, G:0.10, T:0.54
Consensus pattern (155 bp):
TTTGTTCGTATTTTTTTCCTCAGATTTTATTACTTAAAAAAAAAATACTATTTTCTAGTTTTATT
ATTTTACATTATTTTAGTACATTATGTTTGAATGTATTCATTTAGTGTGGTTTTTATTGAAATTT
TAAAAAAAAACCCTTATTTCGTCCC
Found at i:23229000 original size:14 final size:13
Alignment explanation
Indices: 23228981--23229014 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
23228971 TTAAATTTAT
23228981 TTAAAATAAATAAA
1 TTAAAAT-AATAAA
*
23228995 TTAAAATCATAAA
1 TTAAAATAATAAA
23229008 TTAAAAT
1 TTAAAAT
23229015 TTACATTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (13 bp):
TTAAAATAATAAA
Found at i:23229068 original size:42 final size:43
Alignment explanation
Indices: 23229022--23229102 Score: 96
Period size: 42 Copynumber: 1.9 Consensus size: 43
23229012 AATTTACATT
* *
23229022 TATTAAATAATCAAA-TTATAATTTATATTT-AAT-TTTAAGTAA
1 TATTAAA-AATAAAATTTATAACTTA-ATTTCAATATTTAAGTAA
*
23229064 TATTATAAATAAAATTTATAACTTAATTTCAATATTTAA
1 TATTAAAAATAAAATTTATAACTTAATTTCAATATTTAA
23229103 TTTTTTTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
41 10 0.30
42 18 0.55
43 5 0.15
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (43 bp):
TATTAAAAATAAAATTTATAACTTAATTTCAATATTTAAGTAA
Found at i:23234576 original size:87 final size:87
Alignment explanation
Indices: 23234471--23234981 Score: 869
Period size: 87 Copynumber: 5.9 Consensus size: 87
23234461 ACTTGTAATC
* * * **
23234471 TTCGATCTGCTTCACTGTTGACGCAGGAGGGCAAGATCTGCTATCTTTAACCAGCTCCACTGTAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
* *
23234536 CTGATGGAGGCAAGGCCTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* **
23234558 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAACATCTGCTATCTTTAACCAGCTCCACTGTAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
23234623 CCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
*
23234645 TTCGATCTGTTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
*
23234710 CCGATGGAGGCAAGACTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
*
23234732 TTCGATCTGCTTCGCTGTTAACGCATGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
* *
23234797 CTGATGGAGGCAAGGTTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
23234819 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
23234884 CCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* *
23234906 TTCGATCTGTTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
23234971 CCGATGGAGGC
66 CCGATGGAGGC
23234982 TCTGCTTCGC
Statistics
Matches: 403, Mismatches: 21, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 403 1.00
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.29
Consensus pattern (87 bp):
TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
CCGATGGAGGCAAGGCTTTGTT
Found at i:23234591 original size:43 final size:43
Alignment explanation
Indices: 23234543--23234679 Score: 104
Period size: 43 Copynumber: 3.2 Consensus size: 43
23234533 TAACTGATGG
*
23234543 AGGCAAGGCCTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
1 AGGCAAGGCATTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
** * * * *
23234586 AGGCAA--CATCTGCTATCTTTAACCAGCTCCACTG-TAAC-CGATGG-
1 AGGCAAGGCAT-TG-T-T-TTCGATCTGCTTCGCTGTTAACGC-A-GGA
* *
23234630 AGGCAAGGCTTTGTTTTCGATCTGTTTCGCTGTTAACGCAGGA
1 AGGCAAGGCATTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
23234673 AGGCAAG
1 AGGCAAG
23234680 ATCTGCTATC
Statistics
Matches: 68, Mismatches: 15, Indels: 22
0.65 0.14 0.21
Matches are distributed among these distances:
41 2 0.03
42 14 0.21
43 21 0.31
44 14 0.21
45 15 0.22
46 2 0.03
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (43 bp):
AGGCAAGGCATTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
Found at i:23234764 original size:174 final size:173
Alignment explanation
Indices: 23234471--23235069 Score: 904
Period size: 174 Copynumber: 3.5 Consensus size: 173
23234461 ACTTGTAATC
* * * **
23234471 TTCGATCTGCTTCACTGTTGACGCAGGAGGGCAAGATCTGCTATCTTTAACCAGCTCCACTGTAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
* * *
23234536 CTGATGGAGGCAAGGCCTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAACATCTGCTA
66 CCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTA
*
23234601 TCTTTAACCAGCTCCACTGTAACCGATGGAGGCAAGGCTTTGTT
131 TCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGG-TTTGTT
*
23234645 TTCGATCTGTTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
* *
23234710 CCGATGGAGGCAAGACTTTGTTTTCGATCTGCTTCGCTGTTAACGCATGAAGGCAAGATCTGCTA
66 CCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTA
* *
23234775 TCTTTAACCAGCTCCACTACAACTGATGGAGGCAAGGTTTTGTT
131 TCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGG-TTTGTT
23234819 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
*
23234884 CCGATGGAGGCAAGGCTTTGTTTTCGATCTGTTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTA
66 CCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTA
23234949 TCTTTAACCAGCTCCACTGCAACCGAT---GG--A-G---G--
131 TCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGTTTGTT
* * *
23234981 --C--TCTGCTTCGCTGTTAACGCAGGAATGCAAGATCTGCTATCTTTAACCAACTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
*
23235042 CAGATGGAGGCAAGGCTTTGTTTTCGAT
66 CCGATGGAGGCAAGGCTTTGTTTTCGAT
23235070 TCTCATTGAT
Statistics
Matches: 400, Mismatches: 25, Indels: 16
0.91 0.06 0.04
Matches are distributed among these distances:
158 84 0.21
160 1 0.00
164 1 0.00
168 1 0.00
169 1 0.00
171 2 0.00
174 310 0.77
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.29
Consensus pattern (173 bp):
TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
CCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTA
TCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGTTTGTT
Found at i:23234935 original size:261 final size:249
Alignment explanation
Indices: 23234471--23235069 Score: 927
Period size: 261 Copynumber: 2.4 Consensus size: 249
23234461 ACTTGTAATC
* * * *
23234471 TTCGATCTGCTTCACTGTTGACGCAGGAGGGCAAGATCTGCTATCTTTAACCAGCTCCACTGTAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
23234536 CTGATGGAGGCAAGGCCTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAACATCTGCTA
66 CTGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAACATCTGCTA
**
23234601 TCTTTAACCAGCTCCACTGTAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGTTTCGCTGTTAA
131 TCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGTTTCGCTGTTAA
23234666 CGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGACTTTG
196 CGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGAT---GG--AG-----G
* *
23234730 TTTTCGATCTGCTTCGCTGTTAACGCATGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTAC
1 --TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGC
* *
23234795 AACTGATGGAGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGC
64 AACTGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAACATCTGC
23234860 TATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGTTTCGCTGTT
129 TATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGTTTCGCTGTT
*
23234925 AACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGG
194 AACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGG
* *
23234981 --C--TCTGCTTCGCTGTTAACGCAGGAATGCAAGATCTGCTATCTTTAACCAACTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
23235042 CAGATGGAGGCAAGGCTTTGTTTTCGAT
66 CTGATGGAGGCAAGGCTTTGTTTTCGAT
23235070 TCTCATTGAT
Statistics
Matches: 320, Mismatches: 18, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
245 82 0.26
247 1 0.00
251 1 0.00
256 2 0.01
258 2 0.01
261 232 0.73
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.29
Consensus pattern (249 bp):
TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
CTGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAACATCTGCTA
TCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGTTTCGCTGTTAA
CGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGG
Found at i:23235035 original size:71 final size:71
Alignment explanation
Indices: 23234911--23235052 Score: 248
Period size: 71 Copynumber: 2.0 Consensus size: 71
23234901 TTGTTTTCGA
* * *
23234911 TCTGTTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGAT
1 TCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAACTCCACTGCAACAGAT
23234976 GGAGGC
66 GGAGGC
*
23234982 TCTGCTTCGCTGTTAACGCAGGAATGCAAGATCTGCTATCTTTAACCAACTCCACTGCAACAGAT
1 TCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAACTCCACTGCAACAGAT
23235047 GGAGGC
66 GGAGGC
23235053 AAGGCTTTGT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 67 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (71 bp):
TCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAACTCCACTGCAACAGAT
GGAGGC
Found at i:23236298 original size:14 final size:14
Alignment explanation
Indices: 23236279--23236319 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
23236269 TTAGCCTCTC
23236279 CATTTTT-ACTCTTT
1 CATTTTTCA-TCTTT
*
23236293 CATTTTTCATTTTT
1 CATTTTTCATCTTT
23236307 CATTTTTCATCTT
1 CATTTTTCATCTT
23236320 CTCTCTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 23 0.96
15 1 0.04
ACGTcount: A:0.15, C:0.20, G:0.00, T:0.66
Consensus pattern (14 bp):
CATTTTTCATCTTT
Found at i:23236312 original size:6 final size:7
Alignment explanation
Indices: 23236290--23236316 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
23236280 ATTTTTACTC
23236290 TTTCATT
1 TTTCATT
23236297 TTTCATT
1 TTTCATT
23236304 TTTCATT
1 TTTCATT
23236311 TTTCAT
1 TTTCAT
23236317 CTTCTCTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (7 bp):
TTTCATT
Found at i:23236788 original size:33 final size:33
Alignment explanation
Indices: 23236721--23236814 Score: 106
Period size: 33 Copynumber: 2.9 Consensus size: 33
23236711 TCATATTTTA
**
23236721 TTTTGACTTTGATTGATTTC--TC-TTTTTTGC
1 TTTTGACTTTGATTTTTTTCTTTCTTTTTTTGC
*
23236751 TTTTGACTTTGA-TTTTTTCTTTTCTTTTTTTGT
1 TTTTGACTTTGATTTTTTTC-TTTCTTTTTTTGC
* *
23236784 TTTTGATTTTGATTTTTTTCTCTCTTTTTTT
1 TTTTGACTTTGATTTTTTTCTTTCTTTTTTT
23236815 TTTGAATCTG
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
29 5 0.09
30 12 0.22
32 2 0.04
33 28 0.52
34 7 0.13
ACGTcount: A:0.07, C:0.11, G:0.10, T:0.72
Consensus pattern (33 bp):
TTTTGACTTTGATTTTTTTCTTTCTTTTTTTGC
Found at i:23240105 original size:265 final size:265
Alignment explanation
Indices: 23239632--23240164 Score: 976
Period size: 265 Copynumber: 2.0 Consensus size: 265
23239622 GTTTGTCCTT
* *
23239632 CTTGCAGGTGCGACATACAGAGGGTGGACGTGGCATGTACGGAGACGCGTGAGAGGGCAAGGGCT
1 CTTGCAGGTGCGACATACAGAAGGTGGACGTGGCACGTACGGAGACGCGTGAGAGGGCAAGGGCT
* *
23239697 CAGAGCGTACGGAGGCCAGCTGGAGGAGACGCATGCACGCAGAGGCGCAGCACGCACGGACGAGG
66 CAGAGCGTACGGAGGCCAGCTGGAGGAGACGCATGCACGCAGAGGCGCAGCACGCACGAAAGAGG
*
23239762 CCCTGGGTTCGACGGCGCTGGAAGCTGTTTGGTGCTAGGGTTTCTGGTTGTGTTGGGCTGCGTTG
131 CCCTAGGTTCGACGGCGCTGGAAGCTGTTTGGTGCTAGGGTTTCTGGTTGTGTTGGGCTGCGTTG
23239827 GGCCATGATAGTTAGGCTAGACTAGTGATTGGGCTAGAGGGTTAGGTCTTTGTAAATGGACTATT
196 GGCCATGATAGTTAGGCTAGACTAGTGATTGGGCTAGAGGGTTAGGTCTTTGTAAATGGACTATT
23239892 TTAGA
261 TTAGA
* *
23239897 CTTGCAGGTGCGACATACGGAAGGTGGACGTGGCACGTACGGAGGCGCGTGAGAGGGCAAGGGCT
1 CTTGCAGGTGCGACATACAGAAGGTGGACGTGGCACGTACGGAGACGCGTGAGAGGGCAAGGGCT
23239962 CAGAGCGTACGGAGGCCAGCTGGAGGAGACGCATGCACGCAGAGGCGCAGCACGCACGAAAGAGG
66 CAGAGCGTACGGAGGCCAGCTGGAGGAGACGCATGCACGCAGAGGCGCAGCACGCACGAAAGAGG
* *
23240027 CCCTAGGTTCGACGGCGTTGGAAGCTGTTTGGTGCTAGGGTTTCTGGTTGTGTTGGGTTGCGTTG
131 CCCTAGGTTCGACGGCGCTGGAAGCTGTTTGGTGCTAGGGTTTCTGGTTGTGTTGGGCTGCGTTG
*
23240092 GGCCATGATAGTTAGGCTAGACTAGTGATTGGGCTGGAGGGTTAGGTCTTTGTAAATGGACTATT
196 GGCCATGATAGTTAGGCTAGACTAGTGATTGGGCTAGAGGGTTAGGTCTTTGTAAATGGACTATT
23240157 TTAGA
261 TTAGA
23240162 CTT
1 CTT
23240165 TGGTTTTTAT
Statistics
Matches: 258, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
265 258 1.00
ACGTcount: A:0.20, C:0.18, G:0.39, T:0.22
Consensus pattern (265 bp):
CTTGCAGGTGCGACATACAGAAGGTGGACGTGGCACGTACGGAGACGCGTGAGAGGGCAAGGGCT
CAGAGCGTACGGAGGCCAGCTGGAGGAGACGCATGCACGCAGAGGCGCAGCACGCACGAAAGAGG
CCCTAGGTTCGACGGCGCTGGAAGCTGTTTGGTGCTAGGGTTTCTGGTTGTGTTGGGCTGCGTTG
GGCCATGATAGTTAGGCTAGACTAGTGATTGGGCTAGAGGGTTAGGTCTTTGTAAATGGACTATT
TTAGA
Found at i:23244281 original size:50 final size:50
Alignment explanation
Indices: 23244166--23244407 Score: 351
Period size: 50 Copynumber: 4.8 Consensus size: 50
23244156 GATAATAACA
* * ** *
23244166 TGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGATATTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * **
23244217 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
23244267 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTTATTTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
23244317 TGCCAATGCCATGT-CCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
23244366 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
23244408 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 20, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
49 45 0.26
50 93 0.55
51 32 0.19
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:23244368 original size:99 final size:100
Alignment explanation
Indices: 23244166--23244408 Score: 389
Period size: 99 Copynumber: 2.4 Consensus size: 100
23244156 GATAATAACA
* ** * *
23244166 TGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGATATTCTCATATCGGTGCCCATGCCATGT
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGA-CCTCTTATATCGGTGCCAATGCCATGT
*
23244231 CCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
65 CCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
*
23244267 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTTATTTCGGTGCCAATGCCATGT-
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTTATATCGGTGCCAATGCCATGTC
*
23244331 CCAGACATGGTCTTACATGGGACCTCTCATCTCGG
66 CCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
*
23244366 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTT
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTT
23244409 TACCCAAATG
Statistics
Matches: 133, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
99 75 0.56
100 22 0.17
101 36 0.27
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.26
Consensus pattern (100 bp):
TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTTATATCGGTGCCAATGCCATGTC
CCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:23250440 original size:50 final size:50
Alignment explanation
Indices: 23250320--23250512 Score: 242
Period size: 50 Copynumber: 3.8 Consensus size: 50
23250310 GATAATAACA
* ** * *
23250320 TGCCAAAGCCATATCCCAGACATGGTCTTACATGGGATGTTCTAATATCGG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * * **
23250371 TACCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
23250421 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
23250471 TGCCAATGTCATATCCCAGACATGGTCTTACATGAGACCTCT
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCT
23250513 TTACCCAAAT
Statistics
Matches: 123, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
50 92 0.75
51 31 0.25
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:23255194 original size:21 final size:21
Alignment explanation
Indices: 23255156--23255195 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
23255146 GTCAAGCCAT
* **
23255156 TTTAGGGTTTTAGTTTAGTAG
1 TTTAGGATTTTAACTTAGTAG
23255177 TTTAGGATTTTAACTTAGT
1 TTTAGGATTTTAACTTAGT
23255196 TTTATTTTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.03, G:0.23, T:0.53
Consensus pattern (21 bp):
TTTAGGATTTTAACTTAGTAG
Found at i:23255240 original size:28 final size:29
Alignment explanation
Indices: 23255191--23255247 Score: 107
Period size: 28 Copynumber: 2.0 Consensus size: 29
23255181 GGATTTTAAC
23255191 TTAGTTTTATTTTATTTTAAAATATTTTT
1 TTAGTTTTATTTTATTTTAAAATATTTTT
23255220 TTAGTTTTA-TTTATTTTAAAATATTTTT
1 TTAGTTTTATTTTATTTTAAAATATTTTT
23255248 ATTTCTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 19 0.68
29 9 0.32
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (29 bp):
TTAGTTTTATTTTATTTTAAAATATTTTT
Found at i:23261998 original size:19 final size:19
Alignment explanation
Indices: 23261974--23262013 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
23261964 TGACCGTCAA
*
23261974 TGTAGATATATTTTAATCT
1 TGTAGATAGATTTTAATCT
*
23261993 TGTAGATAGGTTTTAATCT
1 TGTAGATAGATTTTAATCT
23262012 TG
1 TG
23262014 ACCGTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.05, G:0.17, T:0.50
Consensus pattern (19 bp):
TGTAGATAGATTTTAATCT
Found at i:23265772 original size:15 final size:15
Alignment explanation
Indices: 23265752--23265782 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23265742 GTTTTAGTTA
23265752 ATTTTTAATTAATGT
1 ATTTTTAATTAATGT
*
23265767 ATTTTTAATTATTGT
1 ATTTTTAATTAATGT
23265782 A
1 A
23265783 ATTAATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.61
Consensus pattern (15 bp):
ATTTTTAATTAATGT
Found at i:23266218 original size:18 final size:17
Alignment explanation
Indices: 23266190--23266223 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
23266180 TAAATTTAAA
23266190 TAAATTGTAATTATTTT
1 TAAATTGTAATTATTTT
23266207 TAAATGTGTAATTATTT
1 TAAAT-TGTAATTATTT
23266224 AAACTTCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (17 bp):
TAAATTGTAATTATTTT
Found at i:23266226 original size:16 final size:16
Alignment explanation
Indices: 23266190--23266223 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 16
23266180 TAAATTTAAA
23266190 TAAATTGTAATTATTTT
1 TAAATTGTAATTA-TTT
23266207 TAAATGTGTAATTATTT
1 TAAAT-TGTAATTATTT
23266224 AAACTTCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (16 bp):
TAAATTGTAATTATTT
Found at i:23266276 original size:44 final size:44
Alignment explanation
Indices: 23266179--23266276 Score: 112
Period size: 44 Copynumber: 2.2 Consensus size: 44
23266169 TTTTTAAGTA
* *
23266179 ATAAATT-TAAATAAATTGTAATTATTTTTAAATGTGTAATTATT
1 ATAAATTCT-AATAAATTGTAATGATTTTTAAATGTATAATTATT
**
23266223 -TAAACTTCTAATAAATTGTAATGATTTTTAAATGTATGGTT-TT
1 ATAAA-TTCTAATAAATTGTAATGATTTTTAAATGTATAATTATT
23266266 CATAAATTCTA
1 -ATAAATTCTA
23266277 TTTTACGTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
43 6 0.13
44 35 0.76
45 5 0.11
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (44 bp):
ATAAATTCTAATAAATTGTAATGATTTTTAAATGTATAATTATT
Found at i:23272695 original size:63 final size:63
Alignment explanation
Indices: 23272619--23272743 Score: 169
Period size: 63 Copynumber: 2.0 Consensus size: 63
23272609 AGATAGAGAT
* *
23272619 ATGGATGTAACTTACTAGACTGATATTAGATCAAACTAGACCCAAGAAGAATAGATCCTGAAC
1 ATGGATGTAACTTACTAGACTGATAGTAGATCAAACTAGACCCAAGAAAAATAGATCCTGAAC
* * *** * *
23272682 ATGGATGTGACTTACTGGACTGATAGTAGATTGGACTAGGCCCAAGAAAAATAGATGCTGAA
1 ATGGATGTAACTTACTAGACTGATAGTAGATCAAACTAGACCCAAGAAAAATAGATCCTGAA
23272744 AATCCGTTTA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 53 1.00
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.24
Consensus pattern (63 bp):
ATGGATGTAACTTACTAGACTGATAGTAGATCAAACTAGACCCAAGAAAAATAGATCCTGAAC
Found at i:23276801 original size:13 final size:13
Alignment explanation
Indices: 23276785--23276814 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
23276775 TTTTTACCTT
*
23276785 TTAATTTTCTTAG
1 TTAATTTACTTAG
23276798 TTAATTTACTTAG
1 TTAATTTACTTAG
23276811 TTAA
1 TTAA
23276815 AATCTAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (13 bp):
TTAATTTACTTAG
Found at i:23287114 original size:18 final size:20
Alignment explanation
Indices: 23287091--23287131 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
23287081 GAGGTGGCAA
23287091 TTTTTCT-AT-CACTTCAAT
1 TTTTTCTAATCCACTTCAAT
23287109 TTTTTCTCAATCCACTTCAAT
1 TTTTTCT-AATCCACTTCAAT
23287130 TT
1 TT
23287132 CTCTTTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
20 2 0.10
21 11 0.55
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.54
Consensus pattern (20 bp):
TTTTTCTAATCCACTTCAAT
Found at i:23292300 original size:54 final size:54
Alignment explanation
Indices: 23292242--23292387 Score: 157
Period size: 54 Copynumber: 2.7 Consensus size: 54
23292232 TGTGTCTTAA
* * * * *
23292242 ACCGTGTAACTCACTGAGTTGGGTCACATGACCGTGTCGCAGGTCGTGTGCCAG
1 ACCGTGTAACTCACTGACTTGGGACACACGACCGTGTCACAGGCCGTGTGCCAG
* * * *
23292296 ACCGTATAACTCTCTGACTTGTGACACACGACCGTGTCACAGGCCGTGTGCTAG
1 ACCGTGTAACTCACTGACTTGGGACACACGACCGTGTCACAGGCCGTGTGCCAG
** * ** *
23292350 GTCGTGTAACTCACTAACTTGATACACACGACTGTGTC
1 ACCGTGTAACTCACTGACTTGGGACACACGACCGTGTC
23292388 TTAAGCCGTG
Statistics
Matches: 75, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 75 1.00
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.25
Consensus pattern (54 bp):
ACCGTGTAACTCACTGACTTGGGACACACGACCGTGTCACAGGCCGTGTGCCAG
Found at i:23295392 original size:9 final size:8
Alignment explanation
Indices: 23295375--23295399 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
23295365 CCAAGTAGGA
23295375 TTATTTTT
1 TTATTTTT
23295383 TTATTTTT
1 TTATTTTT
23295391 TTATTTTT
1 TTATTTTT
23295399 T
1 T
23295400 GAATTCTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTATTTTT
Found at i:23305846 original size:15 final size:16
Alignment explanation
Indices: 23305826--23305855 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23305816 TTGTTTGGTT
23305826 CACCG-TTTGCTATTC
1 CACCGTTTTGCTATTC
23305841 CACCGTTTTGCTATT
1 CACCGTTTTGCTATT
23305856 ACTTGTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.13, C:0.30, G:0.13, T:0.43
Consensus pattern (16 bp):
CACCGTTTTGCTATTC
Found at i:23307811 original size:26 final size:25
Alignment explanation
Indices: 23307751--23307826 Score: 89
Period size: 26 Copynumber: 3.0 Consensus size: 25
23307741 TTGAAGCAGC
* *
23307751 TTTGAAGCAACTTGCTGCTATTGAA
1 TTTGAAGCAGCTTGCTGCTAATGAA
* * *
23307776 ATTGAAGCAGTTTGCTGCTAATGCCA
1 TTTGAAGCAGCTTGCTGCTAATG-AA
*
23307802 TTTGAAGCAGCTTGCTGCTATTGAA
1 TTTGAAGCAGCTTGCTGCTAATGAA
23307827 ATTAAAGGAC
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
25 20 0.49
26 21 0.51
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.34
Consensus pattern (25 bp):
TTTGAAGCAGCTTGCTGCTAATGAA
Found at i:23308396 original size:55 final size:55
Alignment explanation
Indices: 23308329--23308445 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 55
23308319 TATATTATGA
* * * *
23308329 TTTTAGTAAATTA-ATATAAGAATAATTATATTCAAATTTTTATTAAATTATATAT
1 TTTTATTAAATTATATATAAGAATAATTATATT-AAAATATGATTAAATTATATAT
* * * *
23308384 TTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGATTAAATTATTTAT
1 TTTTATTAAATTATATATAAGAATAATTATATTAAAATATGATTAAATTATATAT
23308439 TATTTAT
1 T-TTTAT
23308446 ATTAATAATC
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
55 31 0.60
56 21 0.40
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (55 bp):
TTTTATTAAATTATATATAAGAATAATTATATTAAAATATGATTAAATTATATAT
Found at i:23308401 original size:16 final size:18
Alignment explanation
Indices: 23308364--23308399 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
23308354 TTATATTCAA
23308364 ATTTTTATTAAATTATAT
1 ATTTTTATTAAATTATAT
23308382 ATTTTTATTAAATTATAT
1 ATTTTTATTAAATTATAT
23308400 TTAATAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTTTTATTAAATTATAT
Found at i:23321725 original size:23 final size:23
Alignment explanation
Indices: 23321697--23321742 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
23321687 GAGGTGTCTG
*
23321697 ATACGACATATAAAATGCCTGAT
1 ATACGACACATAAAATGCCTGAT
*
23321720 ATACGACACATAAAGTGCCTGAT
1 ATACGACACATAAAATGCCTGAT
23321743 CAGCAAGGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (23 bp):
ATACGACACATAAAATGCCTGAT
Found at i:23322154 original size:3 final size:3
Alignment explanation
Indices: 23322142--23322180 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
23322132 TAGCTATGGA
23322142 AAT AAT -AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
23322181 CTATTAATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:23322704 original size:9 final size:9
Alignment explanation
Indices: 23322692--23322753 Score: 65
Period size: 9 Copynumber: 6.9 Consensus size: 9
23322682 CTGCTGTTCT
*
23322692 TTTTGTTTC
1 TTTTATTTC
*
23322701 TTTTACTTC
1 TTTTATTTC
*
23322710 TTTTCTTTC
1 TTTTATTTC
23322719 TTTTATTTC
1 TTTTATTTC
23322728 -TTTAGTTTC
1 TTTTA-TTTC
23322737 TTTTATTTAC
1 TTTTATTT-C
23322747 -TTTATTT
1 TTTTATTT
23322754 TATTTACTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
8 4 0.09
9 36 0.80
10 5 0.11
ACGTcount: A:0.10, C:0.13, G:0.03, T:0.74
Consensus pattern (9 bp):
TTTTATTTC
Found at i:23322742 original size:18 final size:18
Alignment explanation
Indices: 23322696--23322750 Score: 74
Period size: 18 Copynumber: 3.0 Consensus size: 18
23322686 TGTTCTTTTT
* *
23322696 GTTTCTTTTACTTCTTTT
1 GTTTCTTTTATTTCTTTA
*
23322714 CTTTCTTTTATTTCTTTA
1 GTTTCTTTTATTTCTTTA
23322732 GTTTCTTTTATTTACTTTA
1 GTTTCTTTTATTT-CTTTA
23322751 TTTTATTTAC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
18 27 0.84
19 5 0.16
ACGTcount: A:0.11, C:0.15, G:0.04, T:0.71
Consensus pattern (18 bp):
GTTTCTTTTATTTCTTTA
Found at i:23323004 original size:24 final size:24
Alignment explanation
Indices: 23322972--23323033 Score: 115
Period size: 24 Copynumber: 2.6 Consensus size: 24
23322962 ATATCATATA
*
23322972 TACCATACACTTGTATTAAATCAT
1 TACCATACATTTGTATTAAATCAT
23322996 TACCATACATTTGTATTAAATCAT
1 TACCATACATTTGTATTAAATCAT
23323020 TACCATACATTTGT
1 TACCATACATTTGT
23323034 CTTTATTTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.35, C:0.19, G:0.05, T:0.40
Consensus pattern (24 bp):
TACCATACATTTGTATTAAATCAT
Found at i:23324388 original size:30 final size:30
Alignment explanation
Indices: 23324354--23324412 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
23324344 TACGAGCTTT
23324354 GGGGCAAAAGTGTAAATATGCAAAAGTTTA
1 GGGGCAAAAGTGTAAATATGCAAAAGTTTA
* * * *
23324384 GGGGCAAAATTGTAATTTTGCCAAAGTTT
1 GGGGCAAAAGTGTAAATATGCAAAAGTTT
23324413 GAGTCAAGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.29
Consensus pattern (30 bp):
GGGGCAAAAGTGTAAATATGCAAAAGTTTA
Found at i:23324880 original size:23 final size:23
Alignment explanation
Indices: 23324853--23324928 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
23324843 AGTGTTATTG
23324853 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
23324876 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
23324899 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
23324922 ATCAGTG
1 ATCAGTG
23324929 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:23325100 original size:38 final size:37
Alignment explanation
Indices: 23325058--23325130 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
23325048 ATGTGTGGAA
* *
23325058 TTGAATTGAATATTGACTTGAAAA-TGGAAAAGTGAATT
1 TTGAATTGAATAGTGA-TT-AAAAGTGAAAAAGTGAATT
23325096 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
23325131 ATTATGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.45, C:0.01, G:0.22, T:0.32
Consensus pattern (37 bp):
TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAATT
Found at i:23329632 original size:13 final size:13
Alignment explanation
Indices: 23329588--23329633 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
23329578 AAGATTTAAT
23329588 ATTTATTAGTATA
1 ATTTATTAGTATA
*
23329601 ATATATATT--TATC
1 AT-T-TATTAGTATA
23329614 ATTTATTAGTATA
1 ATTTATTAGTATA
23329627 ATTTATT
1 ATTTATT
23329634 TGAACTACGA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
11 4 0.15
12 1 0.04
13 17 0.63
14 1 0.04
15 4 0.15
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (13 bp):
ATTTATTAGTATA
Found at i:23330977 original size:61 final size:60
Alignment explanation
Indices: 23330880--23331005 Score: 137
Period size: 61 Copynumber: 2.1 Consensus size: 60
23330870 CCTAAATATA
* * * * * *
23330880 AAAAAATTCAACAAATTTATCCCTTAATGTTAACAAAAATT-TTCATTTTAGTTCTAATTCT
1 AAAAAATTCAACAAATTTAGCCCTCAATATTAAC-AAAATTATT-AATTTAGTCCTAACTCT
* * * *
23330941 AAAAAATTCAATAAATTTGGCCGTCAATATTTACAAAATTATTAATTTAGTCCTAACTCT
1 AAAAAATTCAACAAATTTAGCCCTCAATATTAACAAAATTATTAATTTAGTCCTAACTCT
23331001 AAAAA
1 AAAAA
23331006 TTTAAAAATT
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
60 25 0.46
61 29 0.54
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (60 bp):
AAAAAATTCAACAAATTTAGCCCTCAATATTAACAAAATTATTAATTTAGTCCTAACTCT
Found at i:23338591 original size:33 final size:33
Alignment explanation
Indices: 23338545--23338871 Score: 205
Period size: 33 Copynumber: 9.9 Consensus size: 33
23338535 GTACCAACCC
* *
23338545 GCGCAGCCAAGTGCAAATCCACATGGCCAGCTT
1 GCGCAGCCAAGTGCTAATCCACATGGCCAGCAT
* * * **
23338578 GCTCAGCCCAGTGCTAATCCATATGGCCAAAAT
1 GCGCAGCCAAGTGCTAATCCACATGGCCAGCAT
* * *
23338611 GGGCAACCAAGTGCTAATCC-CTATGGCCAGCCT
1 GCGCAGCCAAGTGCTAATCCAC-ATGGCCAGCAT
* * **
23338644 GCGCAGCCCAGTGCTAATCCATATGGCCAAAAT
1 GCGCAGCCAAGTGCTAATCCACATGGCCAGCAT
* * *
23338677 GGGCAACCAAGTGCTAATCC-CTATGGCCAGCCT
1 GCGCAGCCAAGTGCTAATCCAC-ATGGCCAGCAT
* * * **
23338710 GCGCAGCCCAGTGCTAACCCATATGGCCAAAAT
1 GCGCAGCCAAGTGCTAATCCACATGGCCAGCAT
* *
23338743 GGGCA-CTCAAGTGCTAATCC-CTATGGCCAGCCT
1 GCGCAGC-CAAGTGCTAATCCAC-ATGGCCAGCAT
* * * * ** ** *
23338776 GTGCAGCCCAGTGCTAACCCATACAGCCAAAAC
1 GCGCAGCCAAGTGCTAATCCACATGGCCAGCAT
* * *
23338809 GGGCAGCCAAGTGCTAATCC-CTATGGCCTGCCT
1 GCGCAGCCAAGTGCTAATCCAC-ATGGCCAGCAT
* * * * *
23338842 GCGCAACCCAGTGCAAACCCATATGGCCAG
1 GCGCAGCCAAGTGCTAATCCACATGGCCAG
23338872 TCAAGTGCTA
Statistics
Matches: 212, Mismatches: 72, Indels: 20
0.70 0.24 0.07
Matches are distributed among these distances:
32 1 0.00
33 210 0.99
34 1 0.00
ACGTcount: A:0.27, C:0.33, G:0.23, T:0.17
Consensus pattern (33 bp):
GCGCAGCCAAGTGCTAATCCACATGGCCAGCAT
Found at i:23338637 original size:66 final size:66
Alignment explanation
Indices: 23338551--23338870 Score: 491
Period size: 66 Copynumber: 4.8 Consensus size: 66
23338541 ACCCGCGCAG
* * * *
23338551 CCAAGTGCAAATCCAC-ATGGCCAGCTTGCTCAGCCCAGTGCTAATCCATATGGCCAAAATGGGC
1 CCAAGTGCTAATCC-CTATGGCCAGCCTGCGCAGCCCAGTGCTAACCCATATGGCCAAAATGGGC
23338615 AA
65 AA
*
23338617 CCAAGTGCTAATCCCTATGGCCAGCCTGCGCAGCCCAGTGCTAATCCATATGGCCAAAATGGGCA
1 CCAAGTGCTAATCCCTATGGCCAGCCTGCGCAGCCCAGTGCTAACCCATATGGCCAAAATGGGCA
23338682 A
66 A
23338683 CCAAGTGCTAATCCCTATGGCCAGCCTGCGCAGCCCAGTGCTAACCCATATGGCCAAAATGGGC-
1 CCAAGTGCTAATCCCTATGGCCAGCCTGCGCAGCCCAGTGCTAACCCATATGGCCAAAATGGGCA
23338747 A
66 A
* ** *
23338748 CTCAAGTGCTAATCCCTATGGCCAGCCTGTGCAGCCCAGTGCTAACCCATACAGCCAAAACGGGC
1 C-CAAGTGCTAATCCCTATGGCCAGCCTGCGCAGCCCAGTGCTAACCCATATGGCCAAAATGGGC
*
23338813 AG
65 AA
* * *
23338815 CCAAGTGCTAATCCCTATGGCCTGCCTGCGCAACCCAGTGCAAACCCATATGGCCA
1 CCAAGTGCTAATCCCTATGGCCAGCCTGCGCAGCCCAGTGCTAACCCATATGGCCA
23338871 GTCAAGTGCT
Statistics
Matches: 236, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
65 3 0.01
66 232 0.98
67 1 0.00
ACGTcount: A:0.27, C:0.33, G:0.22, T:0.17
Consensus pattern (66 bp):
CCAAGTGCTAATCCCTATGGCCAGCCTGCGCAGCCCAGTGCTAACCCATATGGCCAAAATGGGCA
A
Found at i:23338924 original size:33 final size:33
Alignment explanation
Indices: 23338877--23339154 Score: 151
Period size: 33 Copynumber: 8.4 Consensus size: 33
23338867 GCCAGTCAAG
* * **
23338877 TGCTAATCCCTATGGCCAGCCAACACAACCAAA
1 TGCTAATCCCTATGGTCAACCTGCACAACCAAA
* * *
23338910 TGCTATTCCTTATGGTCAATCTGCACAACCAAA
1 TGCTAATCCCTATGGTCAACCTGCACAACCAAA
*
23338943 TGCTAATCCGTATGGTCAACCTGCACAACCAAA
1 TGCTAATCCCTATGGTCAACCTGCACAACCAAA
* ** * * *** *
23338976 TGCTAATCCATACAGCCAACCTGTACAGGTACA
1 TGCTAATCCCTATGGTCAACCTGCACAACCAAA
* * * * *
23339009 TGCTAATCCATATGGCCAACCTGCTCAGCCGAA
1 TGCTAATCCCTATGGTCAACCTGCACAACCAAA
* ** * * * * *
23339042 TGCTAATCCATACAGCCAGCCTACACAGCCGAA
1 TGCTAATCCCTATGGTCAACCTGCACAACCAAA
* ** * * * * *
23339075 TGCTAATCCATACAGCCAGCCTACACAGCCGAA
1 TGCTAATCCCTATGGTCAACCTGCACAACCAAA
* * * * * *
23339108 TGCTAATCCATACGGCCAACCTGTACAGCCAAG
1 TGCTAATCCCTATGGTCAACCTGCACAACCAAA
*
23339141 TGCTAATCCATATG
1 TGCTAATCCCTATG
23339155 CCCAACCCAC
Statistics
Matches: 206, Mismatches: 39, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 206 1.00
ACGTcount: A:0.32, C:0.32, G:0.15, T:0.21
Consensus pattern (33 bp):
TGCTAATCCCTATGGTCAACCTGCACAACCAAA
Found at i:23339160 original size:33 final size:31
Alignment explanation
Indices: 23338930--23339161 Score: 185
Period size: 33 Copynumber: 7.0 Consensus size: 31
23338920 TATGGTCAAT
* * * *
23338930 CTGCACAACCAAATGCTAATCCGTATGGTCAAC
1 CTGCACAGCC-AATGCTAATCCATA-AGCCAAC
*
23338963 CTGCACAACCAAATGCTAATCCATACAGCCAAC
1 CTGCACAGCC-AATGCTAATCCATA-AGCCAAC
* ** *
23338996 CTGTACAGGTACATGCTAATCCATATGGCCAAC
1 CTGCACAGCCA-ATGCTAATCCATA-AGCCAAC
* *
23339029 CTGCTCAGCCGAATGCTAATCCATACAGCCAGC
1 CTGCACAGCC-AATGCTAATCCATA-AGCCAAC
* *
23339062 CTACACAGCCGAATGCTAATCCATACAGCCAGC
1 CTGCACAGCC-AATGCTAATCCATA-AGCCAAC
* *
23339095 CTACACAGCCGAATGCTAATCCATACGGCCAAC
1 CTGCACAGCC-AATGCTAATCCATA-AGCCAAC
* *
23339128 CTGTACAGCCAAGTGCTAATCCATATGCCCAAC
1 CTGCACAGCCAA-TGCTAATCCATAAG-CCAAC
23339161 C
1 C
23339162 CACACAGTCT
Statistics
Matches: 171, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
32 4 0.02
33 166 0.97
34 1 0.01
ACGTcount: A:0.32, C:0.34, G:0.15, T:0.19
Consensus pattern (31 bp):
CTGCACAGCCAATGCTAATCCATAAGCCAAC
Found at i:23339167 original size:66 final size:65
Alignment explanation
Indices: 23338877--23339168 Score: 269
Period size: 66 Copynumber: 4.4 Consensus size: 65
23338867 GCCAGTCAAG
* * * * * * ** * * *
23338877 TGCTAATCCCTATGGCCAGCCAACACAACCAAATGCTATTCCTTATGGTCAATCTGCACAACCAA
1 TGCTAATCCATATGGCCAACCTACACAGCCAAATGCTAATCCATACAGCCAACCTGCACAGCC-A
23338942 A
65 A
* * * * * **
23338943 TGCTAATCCGTATGGTCAACCTGCACAACCAAATGCTAATCCATACAGCCAACCTGTACAGGTAC
1 TGCTAATCCATATGGCCAACCTACACAGCCAAATGCTAATCCATACAGCCAACCTGCACAGCCA-
23339008 A
65 A
* * * * *
23339009 TGCTAATCCATATGGCCAACCTGCTCAGCCGAATGCTAATCCATACAGCCAGCCTACACAGCCGA
1 TGCTAATCCATATGGCCAACCTACACAGCCAAATGCTAATCCATACAGCCAACCTGCACAGCC-A
23339074 A
65 A
** * * * *
23339075 TGCTAATCCATACAGCCAGCCTACACAGCCGAATGCTAATCCATACGGCCAACCTGTACAGCCAA
1 TGCTAATCCATATGGCCAACCTACACAGCCAAATGCTAATCCATACAGCCAACCTGCACAGCCAA
* *
23339140 GTGCTAATCCATATGCCCAACCCACACAG
1 -TGCTAATCCATATGGCCAACCTACACAG
23339169 TCTGTATCTG
Statistics
Matches: 184, Mismatches: 39, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
65 3 0.02
66 180 0.98
67 1 0.01
ACGTcount: A:0.32, C:0.34, G:0.15, T:0.20
Consensus pattern (65 bp):
TGCTAATCCATATGGCCAACCTACACAGCCAAATGCTAATCCATACAGCCAACCTGCACAGCCAA
Found at i:23339168 original size:99 final size:97
Alignment explanation
Indices: 23338877--23339168 Score: 266
Period size: 99 Copynumber: 2.9 Consensus size: 97
23338867 GCCAGTCAAG
* ** * * * * * * * * *
23338877 TGCTAATCCCTATGGCCAGCCAACACAACCAAATGCTATTCCTTATGGTCAATCTGCACAACCAA
1 TGCTAATCCATACAGCCAGCCTACACAGCCGAATGCTAATCCATATGGCCAACCTGTACAGCC-A
* * * *
23338942 ATGCTAATCCGTATGGTCAACCTGCACAACCAAA
65 ATGCTAATCCATAT-GCCAACCTACACAGCCAAA
* **
23338976 TGCTAATCCATACAGCCAACCTGTACAG--GTACATGCTAATCCATATGGCCAACCTGCT-CAGC
1 TGCTAATCCATACAGCCAGCCTACACAGCCG-A-ATGCTAATCCATATGGCCAACCTG-TACAGC
* * *
23339038 CGAATGCTAATCCATACAGCCAGCCTACACAGCCGAA
63 C-AATGCTAATCCATA-TGCCAACCTACACAGCCAAA
*
23339075 TGCTAATCCATACAGCCAGCCTACACAGCCGAATGCTAATCCATACGGCCAACCTGTACAGCCAA
1 TGCTAATCCATACAGCCAGCCTACACAGCCGAATGCTAATCCATATGGCCAACCTGTACAGCCAA
*
23339140 GTGCTAATCCATATGCCCAACCCACACAG
66 -TGCTAATCCATATG-CCAACCTACACAG
23339169 TCTGTATCTG
Statistics
Matches: 154, Mismatches: 30, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
98 5 0.03
99 147 0.95
100 1 0.01
101 1 0.01
ACGTcount: A:0.32, C:0.34, G:0.15, T:0.20
Consensus pattern (97 bp):
TGCTAATCCATACAGCCAGCCTACACAGCCGAATGCTAATCCATATGGCCAACCTGTACAGCCAA
TGCTAATCCATATGCCAACCTACACAGCCAAA
Found at i:23339985 original size:18 final size:17
Alignment explanation
Indices: 23339964--23340156 Score: 88
Period size: 18 Copynumber: 11.8 Consensus size: 17
23339954 TGGGGATGAA
*
23339964 CATGGGTATGAACCCAGG
1 CATGGGGATGAA-CCAGG
*
23339982 CATGGGGATGAA-CA-A
1 CATGGGGATGAACCAGG
*
23339997 CATGGGCATGAATCCAGG
1 CATGGGGATGAA-CCAGG
* *
23340015 CATGGGGATG-AGCA-A
1 CATGGGGATGAACCAGG
* *
23340030 TATGGGCATGAATCCAGG
1 CATGGGGATGAA-CCAGG
* *
23340048 CATGGGGATG-AGCA-A
1 CATGGGGATGAACCAGG
* * *
23340063 TATGGGCATGAATCAAGG
1 CATGGGGATGAA-CCAGG
23340081 CATGGGGATG-A--A--
1 CATGGGGATGAACCAGG
*
23340093 CATGGGCATGAATCCAGG
1 CATGGGGATGAA-CCAGG
*
23340111 CATGGGGATGAA-CA-A
1 CATGGGGATGAACCAGG
* *
23340126 CATGGGCATGAATCGAGG
1 CATGGGGATGAA-CCAGG
*
23340144 CATGGAGATGAAC
1 CATGGGGATGAAC
23340157 AATATAGGCA
Statistics
Matches: 127, Mismatches: 30, Indels: 37
0.65 0.15 0.19
Matches are distributed among these distances:
12 9 0.07
13 1 0.01
14 1 0.01
15 38 0.30
16 11 0.09
17 10 0.08
18 57 0.45
ACGTcount: A:0.32, C:0.16, G:0.35, T:0.17
Consensus pattern (17 bp):
CATGGGGATGAACCAGG
Found at i:23340008 original size:33 final size:33
Alignment explanation
Indices: 23339962--23340190 Score: 313
Period size: 33 Copynumber: 7.0 Consensus size: 33
23339952 AATGGGGATG
* *
23339962 AACATGGGTATGAACCCAGGCATGGGGATGAAC
1 AACATGGGCATGAATCCAGGCATGGGGATGAAC
*
23339995 AACATGGGCATGAATCCAGGCATGGGGATGAGC
1 AACATGGGCATGAATCCAGGCATGGGGATGAAC
* *
23340028 AATATGGGCATGAATCCAGGCATGGGGATGAGC
1 AACATGGGCATGAATCCAGGCATGGGGATGAAC
* *
23340061 AATATGGGCATGAATCAAGGCATGGGGATG---
1 AACATGGGCATGAATCCAGGCATGGGGATGAAC
23340091 AACATGGGCATGAATCCAGGCATGGGGATGAAC
1 AACATGGGCATGAATCCAGGCATGGGGATGAAC
* *
23340124 AACATGGGCATGAATCGAGGCATGGAGATGAAC
1 AACATGGGCATGAATCCAGGCATGGGGATGAAC
* * *
23340157 AATATAGGCATG-AGCGCAGGCATGGGGATGAAC
1 AACATGGGCATGAATC-CAGGCATGGGGATGAAC
23340190 A
1 A
23340191 TGGGAATGGG
Statistics
Matches: 178, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
30 28 0.16
32 2 0.01
33 148 0.83
ACGTcount: A:0.33, C:0.16, G:0.35, T:0.16
Consensus pattern (33 bp):
AACATGGGCATGAATCCAGGCATGGGGATGAAC
Found at i:23340135 original size:129 final size:129
Alignment explanation
Indices: 23339953--23340187 Score: 391
Period size: 129 Copynumber: 1.8 Consensus size: 129
23339943 GGGCATGGGA
*
23339953 ATGGGGATGAACATGGGTATGAACCCAGGCATGGGGATGAACAACATGGGCATGAATCCAGGCAT
1 ATGGGGATGAACATGGGCATGAACCCAGGCATGGGGATGAACAACATGGGCATGAATCCAGGCAT
* * * *
23340018 GGGGATGAGCAATATGGGCATGAATC-CAGGCATGGGGATGAGCAATATGGGCATGAATCAAGGC
66 GGAGATGAACAATATAGGCATG-AGCGCAGGCATGGGGATGAGCAATATGGGCATGAATCAAGGC
* *
23340082 ATGGGGATGAACATGGGCATGAATCCAGGCATGGGGATGAACAACATGGGCATGAATCGAGGCAT
1 ATGGGGATGAACATGGGCATGAACCCAGGCATGGGGATGAACAACATGGGCATGAATCCAGGCAT
23340147 GGAGATGAACAATATAGGCATGAGCGCAGGCATGGGGATGA
66 GGAGATGAACAATATAGGCATGAGCGCAGGCATGGGGATGA
23340188 ACATGGGAAT
Statistics
Matches: 98, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
128 2 0.02
129 96 0.98
ACGTcount: A:0.32, C:0.15, G:0.36, T:0.17
Consensus pattern (129 bp):
ATGGGGATGAACATGGGCATGAACCCAGGCATGGGGATGAACAACATGGGCATGAATCCAGGCAT
GGAGATGAACAATATAGGCATGAGCGCAGGCATGGGGATGAGCAATATGGGCATGAATCAAGGC
Found at i:23340191 original size:96 final size:96
Alignment explanation
Indices: 23339971--23340194 Score: 324
Period size: 96 Copynumber: 2.3 Consensus size: 96
23339961 GAACATGGGT
* * *
23339971 ATGAACCCAGGCATGGGGATGAACAACATGGGCATGAATCCAGGCATGGGGATGAGCAATATGGG
1 ATGAAGCCAGGCATGGGGATG---AACATGGGCATGAATCCAGGCATGGGGATGAACAACATGGG
* * *
23340036 CATGAATCCAGGCATGGGGATGAGCAATATGGGC
63 CATGAATCCAGGCATGGAGATGAACAATATAGGC
* *
23340070 ATGAATCAAGGCATGGGGATGAACATGGGCATGAATCCAGGCATGGGGATGAACAACATGGGCAT
1 ATGAAGCCAGGCATGGGGATGAACATGGGCATGAATCCAGGCATGGGGATGAACAACATGGGCAT
*
23340135 GAATCGAGGCATGGAGATGAACAATATAGGC
66 GAATCCAGGCATGGAGATGAACAATATAGGC
23340166 ATG-AGCGCAGGCATGGGGATGAACATGGG
1 ATGAAGC-CAGGCATGGGGATGAACATGGG
23340195 AATGGGGCAG
Statistics
Matches: 114, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
95 2 0.02
96 93 0.82
99 19 0.17
ACGTcount: A:0.33, C:0.16, G:0.36, T:0.16
Consensus pattern (96 bp):
ATGAAGCCAGGCATGGGGATGAACATGGGCATGAATCCAGGCATGGGGATGAACAACATGGGCAT
GAATCCAGGCATGGAGATGAACAATATAGGC
Found at i:23342063 original size:3 final size:3
Alignment explanation
Indices: 23342055--23342083 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
23342045 AAATTAGTTA
23342055 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
23342084 AAGGATAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:23348541 original size:46 final size:46
Alignment explanation
Indices: 23348491--23348598 Score: 126
Period size: 46 Copynumber: 2.3 Consensus size: 46
23348481 GTGTTTCTAT
* * * * *
23348491 TATTGATTTGGCGAGTATTATACTTGAGGGGTAGTAGTGTTTTTGC
1 TATTGACTTGGCGAGTAGTATACTCGAAGGGTACTAGTGTTTTTGC
* * * *
23348537 TATTGACTTGGTGAGTAGTATCCTCGAAGGGTACTAGTTTTTTTTC
1 TATTGACTTGGCGAGTAGTATACTCGAAGGGTACTAGTGTTTTTGC
*
23348583 TATTGACTTAGCGAGT
1 TATTGACTTGGCGAGT
23348599 TTGAAAGGCA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 51 1.00
ACGTcount: A:0.20, C:0.10, G:0.27, T:0.43
Consensus pattern (46 bp):
TATTGACTTGGCGAGTAGTATACTCGAAGGGTACTAGTGTTTTTGC
Found at i:23348644 original size:20 final size:20
Alignment explanation
Indices: 23348602--23348644 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
23348592 AGCGAGTTTG
*
23348602 AAAGGCAATGTCGAACTTGA
1 AAAGGCAATGTCGAACTTAA
* *
23348622 AAAGGCAGTGTCGAGCTTAA
1 AAAGGCAATGTCGAACTTAA
23348642 AAA
1 AAA
23348645 ATCTAGAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.42, C:0.14, G:0.26, T:0.19
Consensus pattern (20 bp):
AAAGGCAATGTCGAACTTAA
Found at i:23349008 original size:132 final size:131
Alignment explanation
Indices: 23348800--23349099 Score: 332
Period size: 132 Copynumber: 2.3 Consensus size: 131
23348790 ACACATGAAT
* *** * * *
23348800 AATAATTTTTTTACAATAATA-ATTTTTACCTCTCATTGGAGTATTCCTAAAAAGGCTAGAAGGT
1 AATAA-TTTTTTACAATAATATATTTTTACCTTTCATCAAAGTATGCCTAAAAAGACTAGAAGAT
* * * * * *
23348864 GCTCGCTGATTTATCAACGAGGTATATATGGCACGACATTTATCCCTGCGCAACACAGAGAAATA
65 GCTCGCTCATTTATCAACGAGGTATACATGGCACCACATTTATCCATGCACAACACAGAAAAATA
23348929 TC
130 TC
* * * *
23348931 AATAATTTTCTACAATAATATATTTTTTACCTTTCATCAAAGTGTGCCTGAAAAGACTAGTAGAT
1 AATAATTTTTTACAATAATATA-TTTTTACCTTTCATCAAAGTATGCCTAAAAAGACTAGAAGAT
* * * * ** * ** *
23348996 GCTTGCTCATTTATCGATGAGTTATACATGGTGCCACATTTATCTATGCATGACTCAGAAAAATA
65 GCTCGCTCATTTATCAACGAGGTATACATGGCACCACATTTATCCATGCACAACACAGAAAAATA
23349061 TC
130 TC
23349063 AATAATTTTTTACAATAATATATTTTTACCTTTCATC
1 AATAATTTTTTACAATAATATATTTTTACCTTTCATC
23349100 GGAGCGTGCC
Statistics
Matches: 139, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
130 14 0.10
131 21 0.15
132 104 0.75
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (131 bp):
AATAATTTTTTACAATAATATATTTTTACCTTTCATCAAAGTATGCCTAAAAAGACTAGAAGATG
CTCGCTCATTTATCAACGAGGTATACATGGCACCACATTTATCCATGCACAACACAGAAAAATAT
C
Found at i:23349182 original size:131 final size:132
Alignment explanation
Indices: 23348919--23349169 Score: 326
Period size: 131 Copynumber: 1.9 Consensus size: 132
23348909 CTGCGCAACA
* * *
23348919 CAGAGAAATATCAATAATTTTCTACAATAATATATTTTTTACCTTTCATCAAAGTGTGCCTGAAA
1 CAGAAAAATATCAATAATTTTCTACAATAATATATTTTTTACCTTTCATCAAAGCGTGCCTAAAA
* ** * * *
23348984 AGACTAGTAGATGCTTGCTCATTTATCGATGAGTTATACATGGTGCCACATTTATCTATGCATGA
66 AGACTAGAAGATGCTCACTCATTAATCGATGAGTTACACATGGTGCAACATTTATCTATGCATGA
23349049 CT
131 CT
* **
23349051 CAGAAAAATATCAATAATTTTTTACAATAATATA-TTTTTACCTTTCATCGGAGCGTGCCTAAAA
1 CAGAAAAATATCAATAATTTTCTACAATAATATATTTTTTACCTTTCATCAAAGCGTGCCTAAAA
** * * *
23349115 AGGTTAGAAGGTTCTCACTCATTAATCGGTGAAG-TACACATGGTGCAACATTTAT
66 AGACTAGAAGATGCTCACTCATTAATCGATG-AGTTACACATGGTGCAACATTTAT
23349170 ACTTGTGTGA
Statistics
Matches: 101, Mismatches: 17, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
131 67 0.66
132 34 0.34
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (132 bp):
CAGAAAAATATCAATAATTTTCTACAATAATATATTTTTTACCTTTCATCAAAGCGTGCCTAAAA
AGACTAGAAGATGCTCACTCATTAATCGATGAGTTACACATGGTGCAACATTTATCTATGCATGA
CT
Found at i:23350021 original size:51 final size:51
Alignment explanation
Indices: 23349907--23350021 Score: 122
Period size: 51 Copynumber: 2.3 Consensus size: 51
23349897 AGGGTTCCTT
** * *
23349907 GTCGCGACGCCACATACTGACTTGGCCTCATCACAATGAGAAATGCTCGAC
1 GTCGCGACGTGACATACTGACTTGGCCTCATCACAACGACAAATGCTCGAC
* * * * ** * *
23349958 GTCACAATGTGACATACTTACTTGGCCTCATTGCGACGACAAATGGTCGAC
1 GTCGCGACGTGACATACTGACTTGGCCTCATCACAACGACAAATGCTCGAC
23350009 GTCGCGACGTGAC
1 GTCGCGACGTGAC
23350022 TGTCTATTTC
Statistics
Matches: 49, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (51 bp):
GTCGCGACGTGACATACTGACTTGGCCTCATCACAACGACAAATGCTCGAC
Found at i:23353574 original size:50 final size:50
Alignment explanation
Indices: 23353474--23353712 Score: 230
Period size: 50 Copynumber: 4.7 Consensus size: 50
23353464 AAAGAGATCT
23353474 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--TGAG---ATGAGAGGTCC
*
23353530 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGTCC
** * * * * **
23353580 CCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGTGAACTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGTCC
* * * * * * * **
23353630 CATGTAAGATCATATCTGGGATATGGCATTGGCAGT-ACAAGAAACATCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGTCC
*
23353679 CATGTAAGACCATGTCTAGGACATGG-ATTTGGCA
1 CATGTAAGACCATGTCTGGGACATGGCA-TTGGCA
23353713 TGTTATTATC
Statistics
Matches: 154, Mismatches: 28, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
48 1 0.01
49 35 0.23
50 80 0.52
53 4 0.03
55 1 0.01
56 33 0.21
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGTCC
Found at i:23355037 original size:241 final size:241
Alignment explanation
Indices: 23354603--23355088 Score: 882
Period size: 241 Copynumber: 2.0 Consensus size: 241
23354593 GTATAGAAAG
*
23354603 AATTAAAAGTTATAATTTATATTTTTTTTGATTCCTTATTGAGTCTATTTTCAGTGGAAATAAGT
1 AATTAAAAGTCATAATTTATATTTTTTTTGATTCCTTATTGAGTCTATTTTCAGTGGAAATAAGT
23354668 AGGAAGTCTATAAAATGAGATAATTAATTTTTAGTGATGAGAGGTCAAGACTATCGAACAGTGAA
66 AGGAAGTCTATAAAATGAGATAATTAATTTTTAGTGATGAGAGGTCAAGACTATCGAACAGTGAA
* *
23354733 ACGGGGGAGACTTTAACTAATAAACTGTACTAATCGGCCATCCCAAAAATTTTGACAATTTTATG
131 ACGGGGGAGACTTTAACTAATAAACTGTACTAATCGGCCAACCCAAAAATTTTGAAAATTTTATG
23354798 GTAAGAAGGTATATGAGTCTAGTTTTAGAGAAAATGTACGGATCTA
196 GTAAGAAGGTATATGAGTCTAGTTTTAGAGAAAATGTACGGATCTA
* *
23354844 AATTAGAAGTCATAATTTATATTTTTTTTGATTCCTTATTGAGTCTATTTTTAGTGGAAATAAGT
1 AATTAAAAGTCATAATTTATATTTTTTTTGATTCCTTATTGAGTCTATTTTCAGTGGAAATAAGT
* * *
23354909 ATGAAGTCTATAAAATGAGATAATTAATTTTTAGTGATGAGAGGTCAGGACTGTCGAACAGTGAA
66 AGGAAGTCTATAAAATGAGATAATTAATTTTTAGTGATGAGAGGTCAAGACTATCGAACAGTGAA
23354974 ACGGGGGAGACTTTAACTAATAAACTGTACTAATCGGCCAACCCAAAAATTTTGAAAATTTTATG
131 ACGGGGGAGACTTTAACTAATAAACTGTACTAATCGGCCAACCCAAAAATTTTGAAAATTTTATG
* *
23355039 GTAAGAAGGTATATGAGTCTAGTTTTGGAGAAAATTTACGGATCTA
196 GTAAGAAGGTATATGAGTCTAGTTTTAGAGAAAATGTACGGATCTA
23355085 AATT
1 AATT
23355089 TCGAGTTTTG
Statistics
Matches: 235, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
241 235 1.00
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.35
Consensus pattern (241 bp):
AATTAAAAGTCATAATTTATATTTTTTTTGATTCCTTATTGAGTCTATTTTCAGTGGAAATAAGT
AGGAAGTCTATAAAATGAGATAATTAATTTTTAGTGATGAGAGGTCAAGACTATCGAACAGTGAA
ACGGGGGAGACTTTAACTAATAAACTGTACTAATCGGCCAACCCAAAAATTTTGAAAATTTTATG
GTAAGAAGGTATATGAGTCTAGTTTTAGAGAAAATGTACGGATCTA
Found at i:23363498 original size:26 final size:25
Alignment explanation
Indices: 23363461--23363520 Score: 77
Period size: 26 Copynumber: 2.4 Consensus size: 25
23363451 TTTTCTCGAG
* *
23363461 GTAAAATCGTCAAAATTTTACTAGG-
1 GTAAAATTGTCAAAACTTTACT-GGA
23363486 GATAAAATTGTCAAAACTTTACTGGA
1 G-TAAAATTGTCAAAACTTTACTGGA
23363512 GTAAAATTG
1 GTAAAATTG
23363521 GGATGAGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 11 0.35
26 20 0.65
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.32
Consensus pattern (25 bp):
GTAAAATTGTCAAAACTTTACTGGA
Found at i:23366309 original size:16 final size:16
Alignment explanation
Indices: 23366285--23366339 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
23366275 AGTATATGTA
*
23366285 TCTATAGTTTTCAGAG
1 TCTAGAGTTTTCAGAG
*
23366301 TCTAGAG-TTTCACAG
1 TCTAGAGTTTTCAGAG
*
23366316 TGT--AGTTTTCAGAG
1 TCTAGAGTTTTCAGAG
23366330 TCTAGAGTTT
1 TCTAGAGTTT
23366340 CAGTATCTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
13 2 0.06
14 9 0.29
15 9 0.29
16 11 0.35
ACGTcount: A:0.24, C:0.13, G:0.22, T:0.42
Consensus pattern (16 bp):
TCTAGAGTTTTCAGAG
Found at i:23366342 original size:15 final size:15
Alignment explanation
Indices: 23366293--23366342 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
23366283 TATCTATAGT
23366293 TTTCAGAGTCTAGAG
1 TTTCAGAGTCTAGAG
* * *
23366308 TTTCACAGTGTAG-T
1 TTTCAGAGTCTAGAG
23366322 TTTCAGAGTCTAGAG
1 TTTCAGAGTCTAGAG
23366337 TTTCAG
1 TTTCAG
23366343 TATCTACAGT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (15 bp):
TTTCAGAGTCTAGAG
Found at i:23367540 original size:49 final size:50
Alignment explanation
Indices: 23367409--23367541 Score: 162
Period size: 49 Copynumber: 2.7 Consensus size: 50
23367399 ATAACACACC
**
23367409 AATAATGTGGACAAGCCACCAGATAATGCAG-TCGAGCTACCAGAAACAA
1 AATAATGTGGACAAGCCACCAGATAATGCAGATTTAGCTACCAGAAACAA
* * * * *
23367458 AATAATGTGGTCAAACCACCAGATATTGCAGATTTA-CTGCCAGATACAA
1 AATAATGTGGACAAGCCACCAGATAATGCAGATTTAGCTACCAGAAACAA
* * *
23367507 AATATTGTGGACAAGCCGCCAGATAATGTAGATTT
1 AATAATGTGGACAAGCCACCAGATAATGCAGATTT
23367542 GTTGTCAAAT
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
49 68 0.97
50 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (50 bp):
AATAATGTGGACAAGCCACCAGATAATGCAGATTTAGCTACCAGAAACAA
Found at i:23367888 original size:26 final size:26
Alignment explanation
Indices: 23367835--23367888 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
23367825 GTCATGAGTA
* *
23367835 ATAGAAATCACAAAATTACATATTTT
1 ATAGAAATCACAAAATCACATATATT
*
23367861 ATAGAAATCACCAAATCACA-ATCATT
1 ATAGAAATCACAAAATCACATAT-ATT
23367887 AT
1 AT
23367889 CACAGATCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.50, C:0.17, G:0.04, T:0.30
Consensus pattern (26 bp):
ATAGAAATCACAAAATCACATATATT
Found at i:23371520 original size:342 final size:342
Alignment explanation
Indices: 23370895--23371583 Score: 1164
Period size: 342 Copynumber: 2.0 Consensus size: 342
23370885 TACAGGCCAT
* * * *
23370895 TGTTAGAATGAAACATTATGCGCTTGTTGTTTTTCTGGGTAGCCAGATGGAATTACGGGGAGTTT
1 TGTTAGAATGAAACATTATGCGCTTGCTGTTTCTCTGGGCAGCCAGATGGAACTACGGGGAGTTT
* *
23370960 CACATAATGCTTATTCTTTCACCATCTTGATTAATTGCTTTTGTCATTTAGGTAAAGTTGATTTT
66 CACATAATGCTTATTCTTTCAACATCTTGATTAATTGCTTTTGTCAGTTAGGTAAAGTTGATTTT
*
23371025 GGGTTTTCTGTTTTGGGGAAAATGCTCAAGTTAGGTTTTGAACCTAATGTTGTAACTTTGTCCAC
131 GGGTTTTCTGTTTTAGGGAAAATGCTCAAGTTAGGTTTTGAACCTAATGTTGTAACTTTGTCCAC
* ** *
23371090 CTTGATTAATGGACTTTGTAATCAAAGCAGGGTTTCTCAGGCTGTGGATTTGTTTTATGAAATGA
196 CTTGATTAATGGACTTTGTAATCAAAGCAAGGTTTCTCAGGCTGAAGATTTGTTTGATGAAATGA
* * * *
23371155 TCGAAAAAGGGTATCGACCTGATTCATTTGCTTGCAATACAGTACTTAATGGGTTGTGCAAGTCT
261 TCAAAAAAGGGTATCGACCTGATTCAGTTGCTTACAATACAGTACTTAATGGGTTGTGCAAGACT
*
23371220 GGTAACACTGGTCGAGC
326 GGGAACACTGGTCGAGC
*
23371237 TGTTAGAATGAAACATTATGCGCTTGCTGTTTCTCTGGGCAGCCAGATGGAACTATGGGGAGTTT
1 TGTTAGAATGAAACATTATGCGCTTGCTGTTTCTCTGGGCAGCCAGATGGAACTACGGGGAGTTT
*
23371302 CACATGATGCTTATTCTTTCAACATCTTGATTAATTGCTTTTGTCAGTTAGGTAAAGTTGATTTT
66 CACATAATGCTTATTCTTTCAACATCTTGATTAATTGCTTTTGTCAGTTAGGTAAAGTTGATTTT
*
23371367 GGGTTTTCTGTTTTAGGGAAAATGCTCAAGTTAGGTTTTGAACCTGATGTTGTAACTTTGTCCAC
131 GGGTTTTCTGTTTTAGGGAAAATGCTCAAGTTAGGTTTTGAACCTAATGTTGTAACTTTGTCCAC
*
23371432 TTTGATTAATGGACTTTGTAATCAAAGCAAGGTTTCTCAGGCTGCAAG-TTTGTTTGATGAAATG
196 CTTGATTAATGGACTTTGTAATCAAAGCAAGGTTTCTCAGGCTG-AAGATTTGTTTGATGAAATG
* *
23371496 ATCAAAAAAGGGTGTCGACCTGATTCAGTTGCTTACAATACAGTACTTAATGGGTTGTGTAAGAC
260 ATCAAAAAAGGGTATCGACCTGATTCAGTTGCTTACAATACAGTACTTAATGGGTTGTGCAAGAC
23371561 TGGGAACACTGGTCGAGC
325 TGGGAACACTGGTCGAGC
23371579 TGTTA
1 TGTTA
23371584 AGTTTCTAAG
Statistics
Matches: 324, Mismatches: 22, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
342 323 1.00
343 1 0.00
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.37
Consensus pattern (342 bp):
TGTTAGAATGAAACATTATGCGCTTGCTGTTTCTCTGGGCAGCCAGATGGAACTACGGGGAGTTT
CACATAATGCTTATTCTTTCAACATCTTGATTAATTGCTTTTGTCAGTTAGGTAAAGTTGATTTT
GGGTTTTCTGTTTTAGGGAAAATGCTCAAGTTAGGTTTTGAACCTAATGTTGTAACTTTGTCCAC
CTTGATTAATGGACTTTGTAATCAAAGCAAGGTTTCTCAGGCTGAAGATTTGTTTGATGAAATGA
TCAAAAAAGGGTATCGACCTGATTCAGTTGCTTACAATACAGTACTTAATGGGTTGTGCAAGACT
GGGAACACTGGTCGAGC
Done.