Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62681010
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1052928 characters in sequence are not A, C, G, or T
File 8 of 210
Found at i:3193355 original size:15 final size:17
Alignment explanation
Indices: 3193334--3193374 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
3193324 TACTTTTTCA
3193334 AAAATTATAAAAAT-AT
1 AAAATTATAAAAATAAT
*
3193350 -AAATTATTAAAATAAT
1 AAAATTATAAAAATAAT
3193366 AAAATTATA
1 AAAATTATA
3193375 TTATTACTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 12 0.57
16 2 0.10
17 7 0.33
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAAATTATAAAAATAAT
Found at i:3193389 original size:22 final size:22
Alignment explanation
Indices: 3193334--3193396 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
3193324 TACTTTTTCA
*
3193334 AAAATTATAAAAATATAAATTATT
1 AAAATTAT-AAAAT-TATATTATT
*
3193358 AAAATAATAAAATTATATTATT
1 AAAATTATAAAATTATATTATT
** *
3193380 ACTATTATAAAAATATA
1 AAAATTATAAAATTATA
3193397 AAATTTAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
22 21 0.64
23 5 0.15
24 7 0.21
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (22 bp):
AAAATTATAAAATTATATTATT
Found at i:3194360 original size:14 final size:14
Alignment explanation
Indices: 3194341--3194382 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
3194331 TGGTGTTTGG
3194341 ATTATGAGTTTTCA
1 ATTATGAGTTTTCA
3194355 ATTATGAGTGGTGTTCA
1 ATTATGAGT--T-TTCA
3194372 ATTATG-GTTTT
1 ATTATGAGTTTT
3194383 GTCTGCCTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
13 2 0.08
14 10 0.40
16 3 0.12
17 10 0.40
ACGTcount: A:0.24, C:0.05, G:0.21, T:0.50
Consensus pattern (14 bp):
ATTATGAGTTTTCA
Found at i:3203929 original size:20 final size:20
Alignment explanation
Indices: 3203904--3203941 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
3203894 TTTTGAAGAT
3203904 AAAATA-TACTTATTAAAATC
1 AAAATATTA-TTATTAAAATC
3203924 AAAATATTATTATTAAAA
1 AAAATATTATTATTAAAA
3203942 GTAAATTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAATATTATTATTAAAATC
Found at i:3205198 original size:29 final size:29
Alignment explanation
Indices: 3205163--3205220 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
3205153 TATTTAAAAT
3205163 TGTTTCAGATGTGAATATGAATATTTGAA
1 TGTTTCAGATGTGAATATGAATATTTGAA
3205192 TGTTTCAGATGTGAATATGAATATTTGAA
1 TGTTTCAGATGTGAATATGAATATTTGAA
3205221 CATTGATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.03, G:0.21, T:0.41
Consensus pattern (29 bp):
TGTTTCAGATGTGAATATGAATATTTGAA
Found at i:3208084 original size:37 final size:37
Alignment explanation
Indices: 3208043--3208262 Score: 390
Period size: 37 Copynumber: 6.0 Consensus size: 37
3208033 GGTAGCTTTA
*
3208043 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
3208080 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
3208117 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
3208154 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
3208191 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
3208228 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
3208263 ATCATACGTA
Statistics
Matches: 178, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
35 11 0.06
36 4 0.02
37 163 0.92
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:3219384 original size:18 final size:18
Alignment explanation
Indices: 3219348--3219390 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
3219338 TTTCTCCTTC
*
3219348 TCTCTCCCCTTCCTCTTTT
1 TCTCT-CCCATCCTCTTTT
*
3219367 TCTCTCCCATCCTTTTTT
1 TCTCTCCCATCCTCTTTT
*
3219385 TTTCTC
1 TCTCTC
3219391 TCTGAGATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.02, C:0.42, G:0.00, T:0.56
Consensus pattern (18 bp):
TCTCTCCCATCCTCTTTT
Found at i:3230167 original size:32 final size:33
Alignment explanation
Indices: 3230112--3230177 Score: 82
Period size: 32 Copynumber: 2.0 Consensus size: 33
3230102 ATTTGGCAAG
*
3230112 TTTAAGTATCAAATTAAGAAAAAAATG-TTAAA
1 TTTAAGTATCAAATTAAGAAAAAAAAGATTAAA
* *
3230144 TTTAGGTATCAAATT-CGATAAAAAAAGATTAAA
1 TTTAAGTATCAAATTAAGA-AAAAAAAGATTAAA
3230177 T
1 T
3230178 ATCAAATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
31 2 0.07
32 21 0.72
33 6 0.21
ACGTcount: A:0.53, C:0.05, G:0.11, T:0.32
Consensus pattern (33 bp):
TTTAAGTATCAAATTAAGAAAAAAAAGATTAAA
Found at i:3231273 original size:24 final size:24
Alignment explanation
Indices: 3231246--3231316 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 24
3231236 TTTACAAAAA
3231246 TAAAATATTTTCTTAAAAATTAAT
1 TAAAATATTTTCTTAAAAATTAAT
* * * *
3231270 T-AAA-ATGTGCAT-ATAA--AA-
1 TAAAATATTTTCTTAAAAATTAAT
3231288 TAAAATATTTTCTTAAAAATTAAT
1 TAAAATATTTTCTTAAAAATTAAT
3231312 TAAAA
1 TAAAA
3231317 ATATAATAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
18 1 0.03
19 5 0.15
20 5 0.15
21 6 0.18
22 5 0.15
23 5 0.15
24 6 0.18
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (24 bp):
TAAAATATTTTCTTAAAAATTAAT
Found at i:3237125 original size:9 final size:10
Alignment explanation
Indices: 3237113--3237171 Score: 50
Period size: 10 Copynumber: 5.9 Consensus size: 10
3237103 TATTATTCTA
3237113 ATTTTTTTA-
1 ATTTTTTTAT
3237122 ATTTTTTTA-
1 ATTTTTTTAT
*
3237131 ACTTTCTTTAT
1 A-TTTTTTTAT
*
3237142 ATATTTTTTAG
1 AT-TTTTTTAT
*
3237153 ATTTTGTTAT
1 ATTTTTTTAT
*
3237163 ACTTTTTTA
1 ATTTTTTTA
3237172 GAAAATATAA
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
9 10 0.25
10 21 0.52
11 9 0.22
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.69
Consensus pattern (10 bp):
ATTTTTTTAT
Found at i:3243688 original size:33 final size:33
Alignment explanation
Indices: 3243646--3243712 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 33
3243636 CGTTTCTTTT
3243646 GTATCTTTT-CTTCTTGTGTGACCACCCCGTTGG
1 GTATCTTTTCCTT-TTGTGTGACCACCCCGTTGG
*
3243679 GTATCTTTTCCTTTTGTGTGACCACCCTGTTGG
1 GTATCTTTTCCTTTTGTGTGACCACCCCGTTGG
3243712 G
1 G
3243713 GCTTTCTATC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 29 0.91
34 3 0.09
ACGTcount: A:0.09, C:0.25, G:0.22, T:0.43
Consensus pattern (33 bp):
GTATCTTTTCCTTTTGTGTGACCACCCCGTTGG
Found at i:3246913 original size:16 final size:17
Alignment explanation
Indices: 3246892--3246926 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
3246882 AAAAATTGAC
3246892 ATTG-AAAATATTTTTT
1 ATTGAAAAATATTTTTT
3246908 ATTGAAAAATATTTTTT
1 ATTGAAAAATATTTTTT
3246925 AT
1 AT
3246927 AAATTCATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (17 bp):
ATTGAAAAATATTTTTT
Found at i:3252086 original size:16 final size:16
Alignment explanation
Indices: 3252065--3252107 Score: 54
Period size: 14 Copynumber: 2.8 Consensus size: 16
3252055 TTTCCAGTTT
*
3252065 TATTTTAATATATGTA
1 TATTTTAATATATATA
3252081 TATTTT--TATATATA
1 TATTTTAATATATATA
3252095 TATTTTGAATATA
1 TATTTT-AATATA
3252108 CTTACATACT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 13 0.57
16 6 0.26
17 4 0.17
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (16 bp):
TATTTTAATATATATA
Found at i:3253171 original size:109 final size:109
Alignment explanation
Indices: 3252975--3253291 Score: 507
Period size: 109 Copynumber: 2.9 Consensus size: 109
3252965 CTAAAATTTT
*
3252975 TTTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTTGAGAAAACATGCCCTAAGGTGCTGGGTG
1 TTTT-AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
*
3253040 TCGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAAA
65 TTGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAAA
3253085 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
3253150 TGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAAA
66 TGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAAA
* * * *
3253194 TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAAGGTGCTGGGT-T
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
* * *
3253257 TCGA--TTTCTCGTTTAACCAAATTGCCAAATATCCT
66 T-GATTTTTCTCGTTCAACCAAATAGCTAAATATCCT
3253292 CTTGAATTTT
Statistics
Matches: 197, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
106 28 0.14
107 2 0.01
108 23 0.12
109 140 0.71
110 4 0.02
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (109 bp):
TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
TGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAAA
Found at i:3268057 original size:24 final size:24
Alignment explanation
Indices: 3268006--3268054 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
3267996 TAAGAAATAT
3268006 ATAATTTAATCTATTAATTTTAAA
1 ATAATTTAATCTATTAATTTTAAA
*
3268030 ATAATATTAATTTACTT-ATTTTAAA
1 ATAAT-TTAATCTA-TTAATTTTAAA
3268055 TAAAAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 5 0.23
25 15 0.68
26 2 0.09
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (24 bp):
ATAATTTAATCTATTAATTTTAAA
Found at i:3268128 original size:18 final size:19
Alignment explanation
Indices: 3268072--3268129 Score: 59
Period size: 18 Copynumber: 3.1 Consensus size: 19
3268062 AAATTAATAC
*
3268072 ATTTATCTTCAATTTAAAAT
1 ATTTAT-TTAAATTTAAAAT
*
3268092 ATTT-TTTAAATATT-TAAT
1 ATTTATTTAAAT-TTAAAAT
3268110 ATTTATTT-AATTTAAAAT
1 ATTTATTTAAATTTAAAAT
3268128 AT
1 AT
3268130 AATTTTAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
17 2 0.06
18 20 0.62
19 6 0.19
20 4 0.12
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.55
Consensus pattern (19 bp):
ATTTATTTAAATTTAAAAT
Found at i:3274436 original size:19 final size:20
Alignment explanation
Indices: 3274391--3274428 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
3274381 TCTTTTTACT
*
3274391 CAAAAGATAAAAAAAAGTTA
1 CAAAATATAAAAAAAAGTTA
3274411 CAAAATATAAAAAAAAGT
1 CAAAATATAAAAAAAAGT
3274429 ATAAAATAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.71, C:0.05, G:0.08, T:0.16
Consensus pattern (20 bp):
CAAAATATAAAAAAAAGTTA
Found at i:3276495 original size:21 final size:23
Alignment explanation
Indices: 3276448--3276489 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
3276438 AAAATAAATA
*
3276448 TAAATTTTATGGATGAATTTAAT
1 TAAATTTTATGGATCAATTTAAT
3276471 TAAATTTTAT-GA-CAATTTA
1 TAAATTTTATGGATCAATTTA
3276490 TCTAAAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 2 0.11
23 10 0.56
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (23 bp):
TAAATTTTATGGATCAATTTAAT
Found at i:3279583 original size:32 final size:33
Alignment explanation
Indices: 3279511--3279584 Score: 96
Period size: 37 Copynumber: 2.2 Consensus size: 33
3279501 ACCCCGAATT
3279511 AAATTCATTTTCAATTTGATTTGATTTGATTCCAACC
1 AAATTCATTTTCAATTTGATTTGATTTGATT----CC
*
3279548 AAATTCATTTTCAATTTGATTTGATTTTATT-C
1 AAATTCATTTTCAATTTGATTTGATTTGATTCC
3279580 AAATT
1 AAATT
3279585 AGTTTAAAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
32 6 0.17
37 30 0.83
ACGTcount: A:0.31, C:0.12, G:0.07, T:0.50
Consensus pattern (33 bp):
AAATTCATTTTCAATTTGATTTGATTTGATTCC
Found at i:3280253 original size:33 final size:31
Alignment explanation
Indices: 3280181--3280253 Score: 92
Period size: 32 Copynumber: 2.3 Consensus size: 31
3280171 GACCCCTCAA
3280181 AAGTTTATGTACCAAATTAAGAAAAAAATGTC
1 AAGTTTA-GTACCAAATTAAGAAAAAAATGTC
* *
3280213 AAATTTAGATACCAAATTAGGAAAAAAAGTGTC
1 AAGTTTAG-TACCAAATTAAGAAAAAAA-TGTC
*
3280246 TAGTTTAG
1 AAGTTTAG
3280254 GAATCAAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
31 1 0.03
32 24 0.69
33 10 0.29
ACGTcount: A:0.48, C:0.08, G:0.15, T:0.29
Consensus pattern (31 bp):
AAGTTTAGTACCAAATTAAGAAAAAAATGTC
Found at i:3280572 original size:15 final size:15
Alignment explanation
Indices: 3280552--3280582 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3280542 TTGAGACTAA
*
3280552 TGTCTAATCAATATT
1 TGTCTAATAAATATT
3280567 TGTCTAATAAATATT
1 TGTCTAATAAATATT
3280582 T
1 T
3280583 TAGAATTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.10, G:0.06, T:0.48
Consensus pattern (15 bp):
TGTCTAATAAATATT
Found at i:3283724 original size:13 final size:13
Alignment explanation
Indices: 3283708--3283743 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
3283698 CATTACTTTT
3283708 GAAAAGTACTGTG
1 GAAAAGTACTGTG
*
3283721 GAAAAGTGCTGTG
1 GAAAAGTACTGTG
3283734 GAAAAGTACT
1 GAAAAGTACT
3283744 TTTGAGAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.39, C:0.08, G:0.31, T:0.22
Consensus pattern (13 bp):
GAAAAGTACTGTG
Found at i:3288340 original size:27 final size:27
Alignment explanation
Indices: 3288310--3288369 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
3288300 CAAAGAAAAG
* * * *
3288310 AAAATTTAAAATGTAAAAATTAAATTA
1 AAAATTAAAAATATAAAAATAAAAATA
* *
3288337 AAAATAAAAAATATTAAAATAAAAATA
1 AAAATTAAAAATATAAAAATAAAAATA
3288364 AAAATT
1 AAAATT
3288370 GGCGAAATTA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (27 bp):
AAAATTAAAAATATAAAAATAAAAATA
Found at i:3288354 original size:21 final size:20
Alignment explanation
Indices: 3288324--3288367 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 20
3288314 TTTAAAATGT
*
3288324 AAAAATTAAATTAAAAATAA
1 AAAAATTAAAATAAAAATAA
3288344 AAAATATTAAAATAAAAATAA
1 AAAA-ATTAAAATAAAAATAA
3288365 AAA
1 AAA
3288368 TTGGCGAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (20 bp):
AAAAATTAAAATAAAAATAA
Found at i:3288846 original size:14 final size:14
Alignment explanation
Indices: 3288827--3288858 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
3288817 ATTTAAAAGG
3288827 GCATGTAAAGAAAA
1 GCATGTAAAGAAAA
*
3288841 GCATGTAAAGTAAA
1 GCATGTAAAGAAAA
3288855 GCAT
1 GCAT
3288859 TCAACAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.50, C:0.09, G:0.22, T:0.19
Consensus pattern (14 bp):
GCATGTAAAGAAAA
Found at i:3289370 original size:21 final size:20
Alignment explanation
Indices: 3289342--3289382 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
3289332 TGCTTCTTGG
*
3289342 CAAATGGATATTGCGATACC
1 CAAATGGATATCGCGATACC
3289362 CAAAGTGGATATCGCGATACC
1 CAAA-TGGATATCGCGATACC
3289383 ATTGAAGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (20 bp):
CAAATGGATATCGCGATACC
Found at i:3291681 original size:21 final size:20
Alignment explanation
Indices: 3291634--3291683 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
3291624 AAAATTATCC
* *
3291634 TTATTTTTATATTTGACAAT
1 TTATTTTTAAATTTAACAAT
*
3291654 TTAATTTTTAAATGTTAATAAT
1 TT-ATTTTTAAAT-TTAACAAT
3291676 TTATTTTT
1 TTATTTTT
3291684 TCCTTTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 15 0.60
22 8 0.32
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (20 bp):
TTATTTTTAAATTTAACAAT
Found at i:3292559 original size:13 final size:13
Alignment explanation
Indices: 3292543--3292584 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
3292533 ATATTCCCTA
*
3292543 AATTAAATGTAAT
1 AATTAAATATAAT
3292556 AATT-AATAATAA-
1 AATTAAAT-ATAAT
3292568 AATTAAATATAAT
1 AATTAAATATAAT
3292581 AATT
1 AATT
3292585 TTATTAGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
12 11 0.44
13 14 0.56
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (13 bp):
AATTAAATATAAT
Found at i:3294636 original size:20 final size:21
Alignment explanation
Indices: 3294613--3294653 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
3294603 ATTTTTATGC
3294613 TTCACT-AAAAAAAAAAAGAA
1 TTCACTCAAAAAAAAAAAGAA
* *
3294633 TTCACTCAAAATAATAAAGAA
1 TTCACTCAAAAAAAAAAAGAA
3294654 GAAAAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.63, C:0.12, G:0.05, T:0.20
Consensus pattern (21 bp):
TTCACTCAAAAAAAAAAAGAA
Found at i:3295558 original size:3 final size:3
Alignment explanation
Indices: 3295550--3295591 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
3295540 TTTAGCTCAT
3295550 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
3295592 AGGTAAGACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:3295835 original size:40 final size:40
Alignment explanation
Indices: 3295787--3295865 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
3295777 CGAATATAAT
3295787 AAATATTTTTTTAATTTTTTTAATTTTAAAAT-ATTTTTA
1 AAATATTTTTTTAATTTTTTTAATTTTAAAATAATTTTTA
** *
3295826 AAATAATTTTTTTTGTTTTTTTATTTTTAAAATAATTTTT
1 AAAT-ATTTTTTTAATTTTTTTAATTTTAAAATAATTTTT
3295866 TGGTGTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
39 4 0.11
40 25 0.71
41 6 0.17
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (40 bp):
AAATATTTTTTTAATTTTTTTAATTTTAAAATAATTTTTA
Found at i:3296293 original size:34 final size:35
Alignment explanation
Indices: 3296249--3296315 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
3296239 CAGTAAAATA
3296249 TTTTCCGTAAAATGATTT-CGGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
* *
3296283 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTT
3296316 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:3296348 original size:33 final size:33
Alignment explanation
Indices: 3296306--3296391 Score: 156
Period size: 33 Copynumber: 2.6 Consensus size: 33
3296296 GATTTACTGG
3296306 AAAATATTTTCTGGTGTTTGATTGAATCTGTGT
1 AAAATATTTTCTGGTGTTTGATTGAATCTGTGT
3296339 AAAATATTTTCTGGTGTTTGATTGAATCTGTGT
1 AAAATATTTTCTGGTGTTTGATTGAATCTGTGT
3296372 AAAATATTTTC-GGCTGTTTG
1 AAAATATTTTCTGG-TGTTTG
3296392 GTAGATTTCC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
32 2 0.04
33 50 0.96
ACGTcount: A:0.24, C:0.07, G:0.21, T:0.48
Consensus pattern (33 bp):
AAAATATTTTCTGGTGTTTGATTGAATCTGTGT
Found at i:3297553 original size:17 final size:17
Alignment explanation
Indices: 3297508--3297547 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
3297498 AATTGTTGAC
*
3297508 AAAAATTAATAATATAT
1 AAAAATTAAAAATATAT
3297525 AAAAATTAAAAATATAT
1 AAAAATTAAAAATATAT
3297542 AAAAAT
1 AAAAAT
3297548 ACAAAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AAAAATTAAAAATATAT
Found at i:3297875 original size:11 final size:11
Alignment explanation
Indices: 3297855--3297891 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
3297845 GGCCCAACCC
*
3297855 ATATTAAATAT
1 ATATTTAATAT
3297866 ATATTTAATAT
1 ATATTTAATAT
3297877 ATA--TAATAT
1 ATATTTAATAT
3297886 ATATTT
1 ATATTT
3297892 GATTAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
9 9 0.39
11 14 0.61
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
ATATTTAATAT
Found at i:3299741 original size:16 final size:17
Alignment explanation
Indices: 3299720--3299752 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
3299710 ATGTCTAGGT
3299720 AAATT-ATTAATTGAGA
1 AAATTAATTAATTGAGA
3299736 AAATTAAATTAATTGAG
1 AAATT-AATTAATTGAG
3299753 GGGTTAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
18 10 0.67
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (17 bp):
AAATTAATTAATTGAGA
Found at i:3301215 original size:46 final size:46
Alignment explanation
Indices: 3301148--3301351 Score: 344
Period size: 46 Copynumber: 4.5 Consensus size: 46
3301138 NNNNNNNNNN
3301148 ATCAAGTGGCAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
1 ATCAAGTGGCAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
3301194 ATCAAGTGGCAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
1 ATCAAGTGGCAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
*
3301240 ATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
1 ATCAAGTGGCAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
* *
3301286 ATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTATCTG
1 ATCAAGTGGCAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
3301331 ATC-AG-GG-ACAAGTGATAAGTG
1 ATCAAGTGGCA-AAGTGATAAGTG
3301352 ATCATACGTA
Statistics
Matches: 154, Mismatches: 3, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
42 1 0.01
43 13 0.08
44 2 0.01
45 19 0.12
46 119 0.77
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.28
Consensus pattern (46 bp):
ATCAAGTGGCAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
Found at i:3303894 original size:23 final size:23
Alignment explanation
Indices: 3303868--3303911 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
3303858 TTTCTTACTA
* *
3303868 TAGTAATTTTTGGGGTATTACAG
1 TAGTAATTTTCGGGATATTACAG
3303891 TAGTAATTTTCGGGATATTAC
1 TAGTAATTTTCGGGATATTAC
3303912 GAAAATAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.07, G:0.23, T:0.43
Consensus pattern (23 bp):
TAGTAATTTTCGGGATATTACAG
Found at i:3306167 original size:29 final size:31
Alignment explanation
Indices: 3306132--3306199 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
3306122 AAGTTATAGA
*
3306132 TTTAGTCCTTGTA-TTTTTAA-TTGATCACT
1 TTTAGTCCTTGTACTTTTCAAGTTGATCACT
* *
3306161 TTTAGTCTTTGTACTTTTCAAGTTGGTCACT
1 TTTAGTCCTTGTACTTTTCAAGTTGATCACT
3306192 TTTAGTCC
1 TTTAGTCC
3306200 CAATACTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 12 0.36
30 6 0.18
31 15 0.45
ACGTcount: A:0.18, C:0.16, G:0.13, T:0.53
Consensus pattern (31 bp):
TTTAGTCCTTGTACTTTTCAAGTTGATCACT
Found at i:3321658 original size:5 final size:5
Alignment explanation
Indices: 3321648--3321676 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
3321638 TCTCTTTGGG
3321648 TCTTT TCTTT TCTTT TCTTT T-TTT TCTTT
1 TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT
3321677 AATCGGAGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TCTTT
Found at i:3334135 original size:20 final size:19
Alignment explanation
Indices: 3334112--3334180 Score: 66
Period size: 20 Copynumber: 3.5 Consensus size: 19
3334102 AAGAGTTATT
3334112 AATTAAAAAAATGAATTAAA
1 AATTAAAAAAAT-AATTAAA
* * **
3334132 AATTAAAAAAGTATTTATT
1 AATTAAAAAAATAATTAAA
*
3334151 AATTAAAAATATTAATTAAA
1 AATTAAAAA-AATAATTAAA
*
3334171 AAATAAAAAA
1 AATTAAAAAA
3334181 GTTTAAAACA
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
19 14 0.36
20 25 0.64
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (19 bp):
AATTAAAAAAATAATTAAA
Found at i:3334150 original size:39 final size:39
Alignment explanation
Indices: 3334107--3334182 Score: 125
Period size: 39 Copynumber: 1.9 Consensus size: 39
3334097 AATAAAAGAG
*
3334107 TTATTAATTAAAAAAATGAATTAAAAATTAAAAAAGTAT
1 TTATTAATTAAAAAAATGAATTAAAAAATAAAAAAGTAT
* *
3334146 TTATTAATTAAAAATATTAATTAAAAAATAAAAAAGT
1 TTATTAATTAAAAAAATGAATTAAAAAATAAAAAAGT
3334183 TTAAAACAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (39 bp):
TTATTAATTAAAAAAATGAATTAAAAAATAAAAAAGTAT
Found at i:3334175 original size:14 final size:13
Alignment explanation
Indices: 3334147--3334172 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3334137 AAAAAGTATT
3334147 TATTAATTAAAAA
1 TATTAATTAAAAA
3334160 TATTAATTAAAAA
1 TATTAATTAAAAA
3334173 ATAAAAAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TATTAATTAAAAA
Found at i:3335858 original size:28 final size:29
Alignment explanation
Indices: 3335827--3335896 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 29
3335817 TAATTAATTA
*
3335827 ATTTTTTAAAATTAAAAATAT-TAAAAAT
1 ATTTTTAAAAATTAAAAATATATAAAAAT
* * *
3335855 ATTTTTAAAAAAT-AAAATGTATAAAATT
1 ATTTTTAAAAATTAAAAATATATAAAAAT
3335883 A-TTTTAAAAATTAA
1 ATTTTTAAAAATTAA
3335897 TTAATTGTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 16 0.46
28 19 0.54
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.41
Consensus pattern (29 bp):
ATTTTTAAAAATTAAAAATATATAAAAAT
Found at i:3341206 original size:2 final size:2
Alignment explanation
Indices: 3341199--3341229 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
3341189 ACAAAGTGAT
3341199 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
3341230 GAAACTTATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3346613 original size:38 final size:40
Alignment explanation
Indices: 3346571--3346646 Score: 95
Period size: 41 Copynumber: 1.9 Consensus size: 40
3346561 CAAGATTGAA
*
3346571 TAAATTTTAAATT-TAA-ATAATAAA-AATAAAATATTATT
1 TAAATGTTAAATTATAATATAATAAATAAT-AAATATTATT
*
3346609 TAAATGTTAATTTAGTAATATAATAAATAATAAATATT
1 TAAATGTTAAATTA-TAATATAATAAATAATAAATATT
3346647 TTTTTGTTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
38 11 0.34
40 3 0.09
41 15 0.47
42 3 0.09
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (40 bp):
TAAATGTTAAATTATAATATAATAAATAATAAATATTATT
Found at i:3350322 original size:109 final size:109
Alignment explanation
Indices: 3350009--3350340 Score: 447
Period size: 109 Copynumber: 3.1 Consensus size: 109
3349999 GACATGGATT
* * *
3350009 AAAA-TTTAAGAGGATATTTGGCTATTTGGTTAAACGAG--AAATCGAAACCTAGCACATTAGGG
1 AAAATTTTAAAAGGATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGG
* * * * *
3350071 CACATTTCCTCAAATTTCCAAACGCAAAATATTGTCTTATTTCG
66 CACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATTTAG
* *
3350115 -AAATTTTAAAAGGATATTTGGCTATTTGATCGAACGAGAAAAATCGAAACCCAGCACATTAGGG
1 AAAATTTTAAAAGGATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGG
* * *
3350179 CACGTTTTCTCGAATTTCTAAACGCAAAACATTGCCTTATTTTG
66 CACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATTTAG
* *
3350223 AAAATTTTAAAAGGATATTTAGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGTG
1 AAAATTTTAAAAGGATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGG
* * ** *
3350288 CACGTTTTCTCGTATTTCCAAATGTTAAATATTGCCTCATTTAG
66 CACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATTTAG
3350332 AAAAATTTT
1 -AAAATTTT
3350341 CTTTTTTGAA
Statistics
Matches: 197, Mismatches: 24, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
105 3 0.02
106 30 0.15
108 60 0.30
109 96 0.49
110 8 0.04
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (109 bp):
AAAATTTTAAAAGGATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGG
CACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATTTAG
Found at i:3350680 original size:24 final size:24
Alignment explanation
Indices: 3350641--3350686 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
3350631 AAAATATATA
*
3350641 TAATATATATAGATATACATATTT
1 TAATATATAAAGATATACATATTT
* *
3350665 TAATATATAAATATATATATAT
1 TAATATATAAAGATATACATAT
3350687 GAATAAGTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (24 bp):
TAATATATAAAGATATACATATTT
Found at i:3350697 original size:14 final size:14
Alignment explanation
Indices: 3350634--3350691 Score: 53
Period size: 14 Copynumber: 3.9 Consensus size: 14
3350624 ATAAGATAAA
3350634 ATATATATAATATAT
1 ATATATATAA-ATAT
* *
3350649 ATAGATATACATATT
1 ATATATATAAATA-T
*
3350664 TTAATATATAAATAT
1 AT-ATATATAAATAT
*
3350679 ATATATATGAATA
1 ATATATATAAATA
3350692 AGTATACACA
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
14 13 0.38
15 12 0.35
16 9 0.26
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (14 bp):
ATATATATAAATAT
Found at i:3350835 original size:3 final size:3
Alignment explanation
Indices: 3350827--3350908 Score: 105
Period size: 3 Copynumber: 27.3 Consensus size: 3
3350817 AAGCTATTAT
* * *
3350827 ATA ATA ATA ATA AT- ATG ATA AGTA ACA ACA AT- ATAA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA AT-A ATA ATA ATA
3350872 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
3350909 AATTACTGAA
Statistics
Matches: 72, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
2 4 0.06
3 63 0.88
4 5 0.07
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:3352329 original size:3 final size:3
Alignment explanation
Indices: 3352321--3352361 Score: 57
Period size: 3 Copynumber: 14.0 Consensus size: 3
3352311 AAGTTAGTAC
* *
3352321 TAT TAT TAT TAT TAT TAT TAT T-T TAA TAT TAT TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
3352362 CATCATATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:3352369 original size:20 final size:20
Alignment explanation
Indices: 3352327--3352370 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
3352317 GTACTATTAT
**
3352327 TATTATTATTATTATTTTAA
1 TATTATTATTATTATCATAA
* *
3352347 TATTATTGTTATTATCATCA
1 TATTATTATTATTATCATAA
3352367 TATT
1 TATT
3352371 TCCATTTATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (20 bp):
TATTATTATTATTATCATAA
Found at i:3352451 original size:2 final size:2
Alignment explanation
Indices: 3352444--3352475 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
3352434 TTTAATTACT
3352444 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3352476 CACATACATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3352785 original size:2 final size:2
Alignment explanation
Indices: 3352778--3352856 Score: 112
Period size: 2 Copynumber: 41.0 Consensus size: 2
3352768 ATGCTTACTC
3352778 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
3352820 AT AT AT AT AT -T AT AT TT A- AT -T A- AT AT AT ACT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT
3352857 TATTTTATAT
Statistics
Matches: 70, Mismatches: 2, Indels: 10
0.85 0.02 0.12
Matches are distributed among these distances:
1 4 0.06
2 64 0.91
3 2 0.03
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:3353181 original size:15 final size:15
Alignment explanation
Indices: 3353163--3353193 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3353153 TTATTACTCC
*
3353163 TTTTTGTTCATATTA
1 TTTTTGTTCACATTA
3353178 TTTTTGTTCACATTA
1 TTTTTGTTCACATTA
3353193 T
1 T
3353194 CATATTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.10, G:0.06, T:0.65
Consensus pattern (15 bp):
TTTTTGTTCACATTA
Found at i:3363355 original size:16 final size:17
Alignment explanation
Indices: 3363330--3363369 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
3363320 GCCCAAATGC
3363330 CAAA-CCCAAAT-AAAA
1 CAAAGCCCAAATCAAAA
*
3363345 CAAAGCCCAAATCCAAA
1 CAAAGCCCAAATCAAAA
3363362 C-AAGCCCA
1 CAAAGCCCA
3363370 TTACAGTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 4 0.18
16 14 0.64
17 4 0.18
ACGTcount: A:0.55, C:0.35, G:0.05, T:0.05
Consensus pattern (17 bp):
CAAAGCCCAAATCAAAA
Found at i:3364571 original size:3 final size:3
Alignment explanation
Indices: 3364563--3364613 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
3364553 CTATTACAAC
3364563 TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
3364610 TAT T
1 TAT T
3364614 TACTCATTTA
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 45 0.96
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:3364745 original size:17 final size:16
Alignment explanation
Indices: 3364714--3364747 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
3364704 TTTCAGTTTA
3364714 TATATATATAAATACT
1 TATATATATAAATACT
*
3364730 TATATGATATATATACT
1 TATAT-ATATAAATACT
3364747 T
1 T
3364748 CACACTTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (16 bp):
TATATATATAAATACT
Found at i:3367410 original size:34 final size:32
Alignment explanation
Indices: 3367350--3367415 Score: 87
Period size: 34 Copynumber: 2.0 Consensus size: 32
3367340 ACTTTTTTTA
**
3367350 ATAAATTTATTGATTTTTAATTTTTAAAAATT
1 ATAAATTTATTGATTTTTAAAATTTAAAAATT
*
3367382 ATAAATGTTCTTGATTTTTTAAAATTTAAAAATT
1 ATAAAT-TTATTGA-TTTTTAAAATTTAAAAATT
3367416 TAATTAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 6 0.21
33 6 0.21
34 17 0.59
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.53
Consensus pattern (32 bp):
ATAAATTTATTGATTTTTAAAATTTAAAAATT
Found at i:3367934 original size:3 final size:3
Alignment explanation
Indices: 3367926--3367957 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
3367916 GCCGCTGTTG
*
3367926 CTT CTT CTT CTT CTT CTT CTT CCT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
3367958 CACTTTCAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (3 bp):
CTT
Found at i:3382695 original size:78 final size:78
Alignment explanation
Indices: 3382566--3382724 Score: 282
Period size: 78 Copynumber: 2.0 Consensus size: 78
3382556 CTATTGACAA
*
3382566 TAACTGTAGCTTGTAGGTGATAATGCTAAATACTAAAACTCACCCTAAACAATGTTTACTTTCAT
1 TAACTGTAGCTTGTAGGTGATAATGCTAAATACGAAAACTCACCCTAAACAATGTTTACTTTCAT
*
3382631 CTACATTCGGAAC
66 CTACATTCAGAAC
**
3382644 TAACTGTAGCTTGTAGGTGATAATGCTAAATACGAAAGTTCACCCTAAACAATGTTTACTTTCAT
1 TAACTGTAGCTTGTAGGTGATAATGCTAAATACGAAAACTCACCCTAAACAATGTTTACTTTCAT
3382709 CTACATTCAGAAC
66 CTACATTCAGAAC
3382722 TAA
1 TAA
3382725 GTCCAATAAC
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (78 bp):
TAACTGTAGCTTGTAGGTGATAATGCTAAATACGAAAACTCACCCTAAACAATGTTTACTTTCAT
CTACATTCAGAAC
Found at i:3391609 original size:2 final size:2
Alignment explanation
Indices: 3391596--3391627 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
3391586 ATCTTCATAC
*
3391596 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3391628 GGTAATTGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:3391736 original size:47 final size:47
Alignment explanation
Indices: 3391650--3391808 Score: 248
Period size: 47 Copynumber: 3.3 Consensus size: 47
3391640 TTATGAATTT
* * *
3391650 TAATATATATGGTAAT-TACTCTTTTTTATTACCTTTAATATATATGGCAA
1 TAATAT-TATGGTAATGT--TC-TTTTCATTGCCTTTAATATATATGGTAA
3391700 TAATATTATGGTAATGTTCTTTTCATTGCCTTTAATATATATGGTAA
1 TAATATTATGGTAATGTTCTTTTCATTGCCTTTAATATATATGGTAA
3391747 TAATATTATGGTAATGTTCTTTTCATTGCCTTTAATATATATGGTAA
1 TAATATTATGGTAATGTTCTTTTCATTGCCTTTAATATATATGGTAA
3391794 TAATATTATGGTAAT
1 TAATATTATGGTAAT
3391809 TGCAATTTTA
Statistics
Matches: 105, Mismatches: 3, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
47 87 0.83
48 2 0.02
49 9 0.09
50 7 0.07
ACGTcount: A:0.32, C:0.08, G:0.11, T:0.48
Consensus pattern (47 bp):
TAATATTATGGTAATGTTCTTTTCATTGCCTTTAATATATATGGTAA
Found at i:3391758 original size:14 final size:15
Alignment explanation
Indices: 3391732--3391761 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
3391722 TCATTGCCTT
3391732 TAATATATATGGTAA
1 TAATATATATGGTAA
3391747 TAATAT-TATGGTAA
1 TAATATATATGGTAA
3391761 T
1 T
3391762 GTTCTTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.43
Consensus pattern (15 bp):
TAATATATATGGTAA
Found at i:3391805 original size:14 final size:15
Alignment explanation
Indices: 3391779--3391808 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
3391769 TCATTGCCTT
3391779 TAATATATATGGTAA
1 TAATATATATGGTAA
3391794 TAATAT-TATGGTAA
1 TAATATATATGGTAA
3391808 T
1 T
3391809 TGCAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.43
Consensus pattern (15 bp):
TAATATATATGGTAA
Found at i:3392325 original size:15 final size:16
Alignment explanation
Indices: 3392305--3392342 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
3392295 TATTATATTT
**
3392305 TAAAAAAATTTAA-TA
1 TAAAAAAATAAAATTA
3392320 TAAAAAAATAAAATTA
1 TAAAAAAATAAAATTA
3392336 TAAAAAA
1 TAAAAAA
3392343 TTAATATGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
TAAAAAAATAAAATTA
Found at i:3395069 original size:18 final size:19
Alignment explanation
Indices: 3395048--3395088 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
3395038 ATTTTGAAAT
*
3395048 TTTTATAAA-TATTCTGAA
1 TTTTAAAAATTATTCTGAA
*
3395066 TTTTAAAAATTATTTTGAA
1 TTTTAAAAATTATTCTGAA
3395085 TTTT
1 TTTT
3395089 TTTTTTGTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (19 bp):
TTTTAAAAATTATTCTGAA
Found at i:3395069 original size:19 final size:18
Alignment explanation
Indices: 3395033--3395089 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 18
3395023 TAAAAAAAAA
3395033 TATAAAT-TTTGAAATTTT
1 TATAAATATTTG-AATTTT
3395051 TATAAATATTCTGAA-TTT
1 TATAAATATT-TGAATTTT
*
3395069 TAAAAATTATTTTGAATTTT
1 TATAAA-TA-TTTGAATTTT
3395089 T
1 T
3395090 TTTTTGTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
18 15 0.45
19 10 0.30
20 8 0.24
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (18 bp):
TATAAATATTTGAATTTT
Found at i:3403925 original size:31 final size:31
Alignment explanation
Indices: 3403888--3403951 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
3403878 TGGGTAGGAG
3403888 AAAAAGGCGGGCAATAGCTAACCTGGAGACT
1 AAAAAGGCGGGCAATAGCTAACCTGGAGACT
3403919 AAAAAGGCGGGCAATAGCTAACCTGGAGACT
1 AAAAAGGCGGGCAATAGCTAACCTGGAGACT
3403950 AA
1 AA
3403952 CACCACGCTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.41, C:0.19, G:0.28, T:0.12
Consensus pattern (31 bp):
AAAAAGGCGGGCAATAGCTAACCTGGAGACT
Found at i:3406908 original size:22 final size:24
Alignment explanation
Indices: 3406870--3406918 Score: 59
Period size: 22 Copynumber: 2.1 Consensus size: 24
3406860 GTGTATATGT
*
3406870 ATATGTATTTACTAAAA-TA-AAA
1 ATATGTATGTACTAAAAGTATAAA
3406892 ATATGTATGTA-TAAAAAGTATAAA
1 ATATGTATGTACT-AAAAGTATAAA
3406916 ATA
1 ATA
3406919 CAAATAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 1 0.04
22 14 0.61
23 2 0.09
24 6 0.26
ACGTcount: A:0.55, C:0.02, G:0.08, T:0.35
Consensus pattern (24 bp):
ATATGTATGTACTAAAAGTATAAA
Found at i:3409137 original size:44 final size:44
Alignment explanation
Indices: 3409079--3409516 Score: 207
Period size: 44 Copynumber: 9.8 Consensus size: 44
3409069 AGTGTCTTCC
*
3409079 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCCTAAATTTTA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTAAATTTTA
* * * *
3409123 ATCCGCTCCACTGTAA-CTTCAGGGAGATAGGATTATCGGCTTCAATCTGATGTG
1 ATCTGCTCCACTGTAATC-TCAGGGAGATA--A-GATC--C-TAAAT-T--T-TA
* * * **
3409177 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCCTAAATTTTA
* * * * *
3409221 ATCCGCTCCACTGTAATTTCAGGGAGATAGGAT--TACTATCTTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTA-AAT-TTTA
* * * * *
3409265 ATCTGCTCCGCTGTAATCTTAGAGAGATAAGA-CCTGAATTTCTTCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCT-AAATT-TT-A
* * * * * ***
3409311 GTCTACTCCACTGTAACCTCAAGGAGATAAGA-CC-AGA-TGCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTAAATTTTA
* * * *
3409352 ATCTACTCTACTGTAACCTCAGAGAGATAAGATCCTAAATTTTA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTAAATTTTA
* * ** * **
3409396 AGCCGCTCCACTGTAA-CTTCAGGGAGATAAGATAGT--GTCTTGG
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCCTAAAT-TTTA
* *** *
3409439 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCT-GGCTTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATC-CTAAATTTTA
*
3409483 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATC
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATC
3409517 TGAAATTCTT
Statistics
Matches: 297, Mismatches: 70, Indels: 54
0.71 0.17 0.13
Matches are distributed among these distances:
41 29 0.10
42 4 0.01
43 38 0.13
44 147 0.49
45 5 0.02
46 29 0.10
47 4 0.01
48 3 0.01
49 2 0.01
50 4 0.01
51 4 0.01
52 1 0.00
53 1 0.00
54 26 0.09
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (44 bp):
ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTAAATTTTA
Found at i:3409152 original size:87 final size:88
Alignment explanation
Indices: 3409002--3409511 Score: 360
Period size: 87 Copynumber: 5.7 Consensus size: 88
3408992 ATCTACTCTA
** *** * * *
3409002 CTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCTATTCTACTG-AAATCTCAGGGGGATA
1 CTGTAATC-TCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACT-TCAGGGAGATA
3409065 GGA-TAGTGTCTTCCATCTGCTCCG
64 GGATTAGTGTCTTCCATCTGCTCCG
*
3409089 CTGTAATCTCAGGGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGG
1 CTGTAATCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGG
* * *
3409154 ATTA-TCGGCTTCAATCTGATGTGATCTACTCTA
66 ATTAGT-GTCTTC---C--ATCTG--CT-C-C-G
** *
3409187 CTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATTTCAGGGAGATAG
1 CTGTAATC-TCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAG
* * *
3409251 GATTACTATCTTCAATCTGCTCCG
65 GATTAGTGTCTTCCATCTGCTCCG
* * ** ** * *
3409275 CTGTAATCTTAGAGAGATAAGA-CCTGAATTTCTTCGGTCTACTCCACTGTAACCTCAAGGAGAT
1 CTGTAATCTCAGAGAGATAAGATCCT-AAATT-TT-AATCCGCTCCACTGTAACTTCAGGGAGAT
* ** * * **
3409339 AAGACCAGATG----CGATCTACTCTA
63 AGGATTAG-TGTCTTCCATCTGCTCCG
* * *
3409362 CTGTAACCTCAGAGAGATAAGATCCTAAATTTTAAGCCGCTCCACTGTAACTTCAGGGAGATAAG
1 CTGTAATCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGG
**
3409427 A-TAGTGTCTTGGATCTGCTCCG
66 ATTAGTGTCTTCCATCTGCTCCG
* *** * * *
3409449 CTGTAATCTCAGGGAGATAAGATCTCT-GGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATA
1 CTGTAATCTCAGAGAGATAAGATC-CTAAATTTTAATCCGCTCCACTGTAACTTCAGGGAGATA
3409512 AGATCTGAAA
Statistics
Matches: 331, Mismatches: 65, Indels: 54
0.74 0.14 0.12
Matches are distributed among these distances:
83 2 0.01
84 2 0.01
85 26 0.08
86 2 0.01
87 146 0.44
88 37 0.11
89 4 0.01
90 27 0.08
91 4 0.01
93 8 0.02
95 2 0.01
96 1 0.00
97 2 0.01
98 67 0.20
99 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (88 bp):
CTGTAATCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGG
ATTAGTGTCTTCCATCTGCTCCG
Found at i:3409264 original size:98 final size:98
Alignment explanation
Indices: 3409089--3409269 Score: 276
Period size: 98 Copynumber: 1.8 Consensus size: 98
3409079 ATCTGCTCCG
*
3409089 CTGTAATCTCAGGGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGG
1 CTGTAATCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGG
*
3409154 ATTATCGGCTTCAATCTGATGTGATCTACTCTA
66 ATTATCAGCTTCAATCTGATGTGATCTACTCTA
** *
3409187 CTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATTTCAGGGAGATAG
1 CTGTAATC-TCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAG
*
3409251 GATTA-CTATCTTCAATCTG
65 GATTATC-AGCTTCAATCTG
3409270 CTCCGCTGTA
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
97 2 0.03
98 73 0.97
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (98 bp):
CTGTAATCTCAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGG
ATTATCAGCTTCAATCTGATGTGATCTACTCTA
Found at i:3421343 original size:25 final size:25
Alignment explanation
Indices: 3421314--3421364 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
3421304 TACGCGAATG
3421314 AATGCCAAAATTTTATTTATTTAAA
1 AATGCCAAAATTTTATTTATTTAAA
3421339 AATGCCAAAATTTTATTTATTTAAA
1 AATGCCAAAATTTTATTTATTTAAA
3421364 A
1 A
3421365 GATATTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.43
Consensus pattern (25 bp):
AATGCCAAAATTTTATTTATTTAAA
Found at i:3421902 original size:22 final size:24
Alignment explanation
Indices: 3421864--3421912 Score: 59
Period size: 22 Copynumber: 2.1 Consensus size: 24
3421854 GTGTATATGT
*
3421864 ATATGTATTTACTAAAA-TA-AAA
1 ATATGTATGTACTAAAAGTATAAA
3421886 ATATGTATGTA-TAAAAAGTATAAA
1 ATATGTATGTACT-AAAAGTATAAA
3421910 ATA
1 ATA
3421913 CAAATAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 1 0.04
22 14 0.61
23 2 0.09
24 6 0.26
ACGTcount: A:0.55, C:0.02, G:0.08, T:0.35
Consensus pattern (24 bp):
ATATGTATGTACTAAAAGTATAAA
Found at i:3423021 original size:20 final size:21
Alignment explanation
Indices: 3422996--3423035 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
3422986 AAACAAGTAA
3422996 AAAATAAA-AAAATAAAAAGG
1 AAAATAAAGAAAATAAAAAGG
*
3423016 AAAATAAAGAAGATAAAAAG
1 AAAATAAAGAAAATAAAAAG
3423036 CGAATCGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10
Consensus pattern (21 bp):
AAAATAAAGAAAATAAAAAGG
Found at i:3423818 original size:31 final size:31
Alignment explanation
Indices: 3423761--3423819 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
3423751 AAAAATCGAT
* *
3423761 TCTTTTTAAAAGGTTAATAATTAAATTTGAC
1 TCTTTTTAAAACGTTAATAATCAAATTTGAC
* *
3423792 TCTTTTTAAAACGTTGATCATCAAATTT
1 TCTTTTTAAAACGTTAATAATCAAATTT
3423820 AGCTCAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.36, C:0.10, G:0.08, T:0.46
Consensus pattern (31 bp):
TCTTTTTAAAACGTTAATAATCAAATTTGAC
Found at i:3427381 original size:25 final size:24
Alignment explanation
Indices: 3427314--3427381 Score: 59
Period size: 25 Copynumber: 2.8 Consensus size: 24
3427304 ATGAAAATGT
*
3427314 TATTGTATAAATAAAATTA-CAAA
1 TATTGTAAAAATAAAATTATCAAA
* * * *
3427337 TA-TATAAAAATGGAATTTATGAATA
1 TATTGTAAAAAT-AAAATTATCAA-A
3427362 TATTGTAAAAATAAAATTAT
1 TATTGTAAAAATAAAATTAT
3427382 AAAAATGTGT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
22 7 0.21
23 7 0.21
24 2 0.06
25 9 0.27
26 8 0.24
ACGTcount: A:0.54, C:0.01, G:0.07, T:0.37
Consensus pattern (24 bp):
TATTGTAAAAATAAAATTATCAAA
Found at i:3427466 original size:21 final size:21
Alignment explanation
Indices: 3427442--3427481 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
3427432 TAATTGAATA
* *
3427442 AATAATAATACATGATAAAGG
1 AATAAAAATACATAATAAAGG
3427463 AATAAAAATACATAATAAA
1 AATAAAAATACATAATAAA
3427482 ATAAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.65, C:0.05, G:0.07, T:0.23
Consensus pattern (21 bp):
AATAAAAATACATAATAAAGG
Found at i:3427546 original size:12 final size:12
Alignment explanation
Indices: 3427530--3427560 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
3427520 AATAACATCT
3427530 ATAATAATAGTA
1 ATAATAATAGTA
*
3427542 GTAATAATAGTA
1 ATAATAATAGTA
3427554 ATAATAA
1 ATAATAA
3427561 CAATAGTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.32
Consensus pattern (12 bp):
ATAATAATAGTA
Found at i:3442938 original size:4 final size:4
Alignment explanation
Indices: 3442929--3442979 Score: 93
Period size: 4 Copynumber: 12.8 Consensus size: 4
3442919 ATATACTCCT
*
3442929 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC CTAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3442977 ATA
1 ATA
3442980 TATATATCGT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:3451512 original size:17 final size:16
Alignment explanation
Indices: 3451483--3451518 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
3451473 TTATAAAAAT
3451483 AATAATTAATTACGAA
1 AATAATTAATTACGAA
*
3451499 AATAGATTATTTACGAA
1 AATA-ATTAATTACGAA
3451516 AAT
1 AAT
3451519 GAGTTGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.33
Consensus pattern (16 bp):
AATAATTAATTACGAA
Found at i:3456116 original size:14 final size:14
Alignment explanation
Indices: 3456074--3456117 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
3456064 ACGTTTGCGA
*
3456074 ATAAAAT-AAATAA
1 ATAAAATAAAATAT
3456087 ATAAAAATAAACATAT
1 AT-AAAATAAA-ATAT
3456103 ATAAAATAAAATAT
1 ATAAAATAAAATAT
3456117 A
1 A
3456118 AATAGAATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 2 0.07
14 10 0.37
15 10 0.37
16 5 0.19
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (14 bp):
ATAAAATAAAATAT
Found at i:3459480 original size:82 final size:80
Alignment explanation
Indices: 3459334--3459715 Score: 481
Period size: 74 Copynumber: 4.9 Consensus size: 80
3459324 TACGTATGAT
* * * *
3459334 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTA-ACTACCACTTATCACTTTGTCTCTT
3459397 GATCAGATAAGTGTAG
65 GATCAGATAAGTGTAG
3459413 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AA-CTACCACTTATCACTTTGTCTCT
*
3459478 TGATCAGATAAGTTTAG
64 TGATCAGATAAGTGTAG
*
3459495 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--T-A--ACCACTTATCACTTTGTTTCTTG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAACTACCACTTATCACTTTGTCTCTTG
*
3459553 ATCAGATAAGTGTAAC
66 ATCAGATAAGTGT-AG
** *
3459569 CACTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T-A--ACCACTTATCACTTTGTTTCTTG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAACTACCACTTATCACTTTGTCTCTTG
3459627 ATCAGATAAGTGTAG
66 ATCAGATAAGTGTAG
* *
3459642 CAACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAACTACCACTTATCACTTTTTCAC
1 C-ACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT--AACTACCACTTATCACTTTGTCTC
3459707 TTGATCAGA
63 TTGATCAGA
3459716 AGTACTCAAA
Statistics
Matches: 271, Mismatches: 16, Indels: 28
0.86 0.05 0.09
Matches are distributed among these distances:
73 36 0.13
74 96 0.35
76 3 0.01
77 1 0.00
78 2 0.01
79 10 0.04
80 8 0.03
81 21 0.08
82 68 0.25
83 26 0.10
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.36
Consensus pattern (80 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAACTACCACTTATCACTTTGTCTCTTG
ATCAGATAAGTGTAG
Found at i:3459679 original size:37 final size:37
Alignment explanation
Indices: 3459457--3459677 Score: 345
Period size: 37 Copynumber: 6.0 Consensus size: 37
3459447 AGCTAAAGCT
*
3459457 ACCACTTATCACTTTGTCTCTTGATCAGATAAGT-TT
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
* * *
3459493 AGCACTTATCACTTTGTCACTTGATCAGATAAGTATA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
*
3459530 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
*
3459567 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
*
3459604 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
* * *
3459641 GCAACTTATCACTTTGTCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
3459678 GCTAAAACTA
Statistics
Matches: 173, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
36 32 0.18
37 141 0.82
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
Found at i:3461830 original size:26 final size:25
Alignment explanation
Indices: 3461785--3461833 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
3461775 ATATCTCTAT
*
3461785 TTTCCATATTTGTTATTCTATTTCC
1 TTTCCATATTTGTTACTCTATTTCC
3461810 TTTCCTATATTTGATT-CTCTATTT
1 TTTCC-ATATTTG-TTACTCTATTT
3461834 TCAACAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 5 0.24
26 14 0.67
27 2 0.10
ACGTcount: A:0.16, C:0.18, G:0.04, T:0.61
Consensus pattern (25 bp):
TTTCCATATTTGTTACTCTATTTCC
Found at i:3461862 original size:84 final size:85
Alignment explanation
Indices: 3461721--3461889 Score: 252
Period size: 84 Copynumber: 2.0 Consensus size: 85
3461711 TATTACACTC
* * *
3461721 TTTCCTTTTCTATATTTGATTCTCTATTTTCCATAAAATATTAAATTTCCTTTCATATCTCTATT
1 TTTCCTTTCCTATATTTGATTCTCTATTTTCAACAAAATATTAAATTTCCTTTCATATCTCTATT
* *
3461786 TTCCATAT-TTGTTATTCTA
66 GTACATATATTGTTATTCTA
*
3461805 TTTCCTTTCCTATATTTGATTCTCTATTTTCAACAAAATATTCAA-TTCTCTTTCATATCTCTAT
1 TTTCCTTTCCTATATTTGATTCTCTATTTTCAACAAAATATTAAATTTC-CTTTCATATCTCTAT
3461869 TGTACATATAGTTGTTATTCT
65 TGTACATATA-TTGTTATTCT
3461890 CTTGCATTTC
Statistics
Matches: 76, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
83 3 0.04
84 63 0.83
86 10 0.13
ACGTcount: A:0.24, C:0.18, G:0.04, T:0.54
Consensus pattern (85 bp):
TTTCCTTTCCTATATTTGATTCTCTATTTTCAACAAAATATTAAATTTCCTTTCATATCTCTATT
GTACATATATTGTTATTCTA
Found at i:3463286 original size:42 final size:42
Alignment explanation
Indices: 3463227--3463452 Score: 281
Period size: 42 Copynumber: 5.3 Consensus size: 42
3463217 CTATAGAATG
* * * * *
3463227 TGACCTTTAGCTGCGCTTTTCCACAAATGACAATAAAGAACA
1 TGACCTTTAGCGGCGCTTTCCCACAAACGCCACTAAAGAACA
*
3463269 TGACCTTTAGCGGCGCTTTTCCCACAAACGCCACTATAGAACA
1 TGACCTTTAGCGGCGC-TTTCCCACAAACGCCACTAAAGAACA
* * *
3463312 TGATCTTTAGCGGCGCTGTCCCACAAACGCCGCTAAAGAACA
1 TGACCTTTAGCGGCGCTTTCCCACAAACGCCACTAAAGAACA
*** *
3463354 TGACCTTTAGCGGCGCTTTCCCACAAACGCGGTTAAAAAACA
1 TGACCTTTAGCGGCGCTTTCCCACAAACGCCACTAAAGAACA
* ** *
3463396 TGACTTTTAGCGGTACTTTCCCTACAAACGCCACTACAGAACA
1 TGACCTTTAGCGGCGCTTTCCC-ACAAACGCCACTAAAGAACA
3463439 TGACCTTTAGCGGC
1 TGACCTTTAGCGGC
3463453 ATTTGTGGAA
Statistics
Matches: 157, Mismatches: 25, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
42 94 0.60
43 63 0.40
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (42 bp):
TGACCTTTAGCGGCGCTTTCCCACAAACGCCACTAAAGAACA
Found at i:3463360 original size:85 final size:85
Alignment explanation
Indices: 3463260--3463452 Score: 264
Period size: 85 Copynumber: 2.3 Consensus size: 85
3463250 CAAATGACAA
* *
3463260 TAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCCACTATAGAACATGA-TCTTTAGCG
1 TAAAGAACATGACCTTTAGCGGCGC-TTTCCCACAAACGCCACTAAAAAACATGACT-TTTAGCG
* *
3463324 GCGCTGTCCC-ACAAACGCCGC
64 GCACTGTCCCTACAAACGCCAC
*** *
3463345 TAAAGAACATGACCTTTAGCGGCGCTTTCCCACAAACGCGGTTAAAAAACATGACTTTTAGCGGT
1 TAAAGAACATGACCTTTAGCGGCGCTTTCCCACAAACGCCACTAAAAAACATGACTTTTAGCGGC
*
3463410 ACTTTCCCTACAAACGCCAC
66 ACTGTCCCTACAAACGCCAC
*
3463430 TACAGAACATGACCTTTAGCGGC
1 TAAAGAACATGACCTTTAGCGGC
3463453 ATTTGTGGAA
Statistics
Matches: 96, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
84 38 0.40
85 58 0.60
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (85 bp):
TAAAGAACATGACCTTTAGCGGCGCTTTCCCACAAACGCCACTAAAAAACATGACTTTTAGCGGC
ACTGTCCCTACAAACGCCAC
Found at i:3471655 original size:39 final size:39
Alignment explanation
Indices: 3471574--3471746 Score: 177
Period size: 45 Copynumber: 4.2 Consensus size: 39
3471564 ATTTGCCGGC
* * * *
3471574 TTACTGATTAGGCAC-TTATGTGCCGACTACTGTTACTG
1 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
3471612 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
1 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
*
3471651 TTACTGTTACCGACTCGGCACTTTGTGTGTCGAATACTGTTACTG
1 TTAC---T---GATTCGGCACTTTGTGTGTCGAATACTGTTACTG
*
3471696 TTACTGTTATCGATTCGGCACTTTGTGTGTCGAATACTGTTACCG
1 TTAC-----T-GATTCGGCACTTTGTGTGTCGAATACTGTTACTG
3471741 TTACTG
1 TTACTG
3471747 TTACAGATTC
Statistics
Matches: 117, Mismatches: 9, Indels: 17
0.82 0.06 0.12
Matches are distributed among these distances:
38 14 0.12
39 25 0.21
40 1 0.01
42 1 0.01
45 74 0.63
47 2 0.02
ACGTcount: A:0.18, C:0.20, G:0.22, T:0.39
Consensus pattern (39 bp):
TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
Found at i:3471669 original size:45 final size:45
Alignment explanation
Indices: 3471601--3471800 Score: 301
Period size: 45 Copynumber: 4.4 Consensus size: 45
3471591 ATGTGCCGAC
*
3471601 TACTGTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATACTGT
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGT
*
3471646 TACTGTTACTGTTACCGACTCGGCACTTTGTGTGTCGAATACTGT
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGT
*
3471691 TACTGTTACTGTTATCGATTCGGCACTTTGTGTGTCGAATACTGT
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGT
* * * * *
3471736 TACCGTTACTGTTACAGATTCAGCACTTTGCGTGTTGAATACTGT
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGT
* * *
3471781 TACTGCTACCGTTACTGATT
1 TACTGTTACTGTTACCGATT
3471801 ACTGTATACT
Statistics
Matches: 141, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 141 1.00
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (45 bp):
TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGT
Found at i:3473019 original size:9 final size:9
Alignment explanation
Indices: 3472971--3473099 Score: 61
Period size: 9 Copynumber: 14.6 Consensus size: 9
3472961 ATCCAAAGTT
3472971 TTATGTAAG
1 TTATGTAAG
*
3472980 TTATGATATG
1 TTATG-TAAG
* * *
3472990 ATATAT-AT
1 TTATGTAAG
3472998 TTATGT-A-
1 TTATGTAAG
3473005 TTATGTAAG
1 TTATGTAAG
3473014 TTATGTAAG
1 TTATGTAAG
*
3473023 TTATGATATG
1 TTATG-TAAG
* * *
3473033 ATATAT-AT
1 TTATGTAAG
*
3473041 TTTTGTAAG
1 TTATGTAAG
*
3473050 TTACGTAAG
1 TTATGTAAG
*
3473059 TTATGATATG
1 TTATG-TAAG
* * *
3473069 ATATAT-AC
1 TTATGTAAG
3473077 TTATGTAAG
1 TTATGTAAG
*
3473086 TTATGTAAA
1 TTATGTAAG
3473095 TTATG
1 TTATG
3473100 AAATTTGAAC
Statistics
Matches: 85, Mismatches: 28, Indels: 14
0.67 0.22 0.11
Matches are distributed among these distances:
7 6 0.07
8 13 0.15
9 48 0.56
10 18 0.21
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:3473021 original size:43 final size:42
Alignment explanation
Indices: 3472971--3473099 Score: 162
Period size: 36 Copynumber: 3.1 Consensus size: 42
3472961 ATCCAAAGTT
3472971 TTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAG
1 TTATGTAAGTTATGATATGATATATA-TTATGTATTATGTAAG
3473014 TTATGTAAGTTATGATATG--ATATA-TAT-T-TT-TGTAAG
1 TTATGTAAGTTATGATATGATATATATTATGTATTATGTAAG
* *
3473050 TTACGTAAGTTATGATATGATATATACTTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGATATGATATATA-TTATGT-A-TTATGTAAG
3473095 TTATG
1 TTATG
3473100 AAATTTGAAC
Statistics
Matches: 74, Mismatches: 3, Indels: 16
0.80 0.03 0.17
Matches are distributed among these distances:
36 24 0.32
37 2 0.03
38 6 0.08
39 3 0.04
40 3 0.04
41 6 0.08
43 19 0.26
44 2 0.03
45 9 0.12
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (42 bp):
TTATGTAAGTTATGATATGATATATATTATGTATTATGTAAG
Found at i:3480854 original size:178 final size:173
Alignment explanation
Indices: 3480509--3480859 Score: 612
Period size: 178 Copynumber: 2.0 Consensus size: 173
3480499 CTAATTCATC
*
3480509 CCTTCTCTGTATTGAACTCCAAAATCCATTGTCTTGGATCTCTAACTCTTTTTCTCGAAATTTCT
1 CCTTCTCTGTATTGAACTCCAAAATCCATTGTCTTGGATCTATAACTCTTTTTCTCGAAATTTCT
3480574 TCATGATAAAGTCTTGAACGAATAAGTTGAGCTTTGACTTCAACTATTTGGATTTGGATCTCGTG
66 TCATGATAAAGTCTTGAACGAATAAGTTGAGCTTTGACTTCAACTATTTGGATTTGGATCTCGTG
3480639 ATTGGGCCTTGAGGGAATTTAAGCCCATCTCCATCATAAACTT
131 ATTGGGCCTTGAGGGAATTTAAGCCCATCTCCATCATAAACTT
* *
3480682 CCTTGCTCTGTATTGAATTCCAAAATCCATTGTCTTGGATCTATATCTCTTTTTCTCGAAATTTC
1 CCTT-CTCTGTATTGAACTCCAAAATCCATTGTCTTGGATCTATAACTCTTTTTCTCGAAATTTC
*
3480747 TTCATGATAAAGTCTTGAACGAATATATAAGTTGAGCTTTGACTTCAACTGTTTGGATTTGGATC
65 TTCATGATAAAGTCTTGAACG---A-ATAAGTTGAGCTTTGACTTCAACTATTTGGATTTGGATC
*
3480812 TTGTGATTGGGCCTTGAGGGAATTTAAGCCCATCTCCATCATAAACTT
126 TCGTGATTGGGCCTTGAGGGAATTTAAGCCCATCTCCATCATAAACTT
3480860 TGAATTGGAT
Statistics
Matches: 168, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
173 4 0.02
174 78 0.46
177 1 0.01
178 85 0.51
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (173 bp):
CCTTCTCTGTATTGAACTCCAAAATCCATTGTCTTGGATCTATAACTCTTTTTCTCGAAATTTCT
TCATGATAAAGTCTTGAACGAATAAGTTGAGCTTTGACTTCAACTATTTGGATTTGGATCTCGTG
ATTGGGCCTTGAGGGAATTTAAGCCCATCTCCATCATAAACTT
Found at i:3482219 original size:2 final size:2
Alignment explanation
Indices: 3482214--3482243 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
3482204 TTGTTATTAA
3482214 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3482244 TAACTTGAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3489258 original size:28 final size:28
Alignment explanation
Indices: 3489218--3489275 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
3489208 TGATTCAAAC
*
3489218 TTTCAAGTTTGACTTGATCAACCAGATT
1 TTTCAAGTTTGACTTGATCAACCAAATT
3489246 TTTCAAGTTTGACTTGATCAACCAAATT
1 TTTCAAGTTTGACTTGATCAACCAAATT
3489274 TT
1 TT
3489276 AACATGCGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.41
Consensus pattern (28 bp):
TTTCAAGTTTGACTTGATCAACCAAATT
Found at i:3491327 original size:13 final size:13
Alignment explanation
Indices: 3491309--3491338 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
3491299 AATATTTATA
*
3491309 AAAGATCGAACCC
1 AAAGATCAAACCC
3491322 AAAGATCAAACCC
1 AAAGATCAAACCC
3491335 AAAG
1 AAAG
3491339 GAAAAGATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.53, C:0.27, G:0.13, T:0.07
Consensus pattern (13 bp):
AAAGATCAAACCC
Found at i:3491919 original size:19 final size:18
Alignment explanation
Indices: 3491891--3491926 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
3491881 AAGCAGCTAT
3491891 AAAAGTAAAACTTAAGAA
1 AAAAGTAAAACTTAAGAA
*
3491909 AAAATGTAAAAGTTAAGA
1 AAAA-GTAAAACTTAAGA
3491927 TTTTAATGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.64, C:0.03, G:0.14, T:0.19
Consensus pattern (18 bp):
AAAAGTAAAACTTAAGAA
Found at i:3492244 original size:11 final size:11
Alignment explanation
Indices: 3492228--3492271 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
3492218 CTAAGTGCAG
3492228 AGAAAACCTAA
1 AGAAAACCTAA
*
3492239 AGAAAACCTAG
1 AGAAAACCTAA
* *
3492250 AGAAAACTTAG
1 AGAAAACCTAA
3492261 AGAAAA-CTAA
1 AGAAAACCTAA
3492271 A
1 A
3492272 CCTAAACTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 3 0.10
11 26 0.90
ACGTcount: A:0.61, C:0.14, G:0.14, T:0.11
Consensus pattern (11 bp):
AGAAAACCTAA
Found at i:3492254 original size:22 final size:22
Alignment explanation
Indices: 3492226--3492267 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
3492216 ACCTAAGTGC
3492226 AGAGAAAACCTAAAGAAAACCT
1 AGAGAAAACCTAAAGAAAACCT
* *
3492248 AGAGAAAACTTAGAGAAAAC
1 AGAGAAAACCTAAAGAAAAC
3492268 TAAACCTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.14, G:0.17, T:0.10
Consensus pattern (22 bp):
AGAGAAAACCTAAAGAAAACCT
Found at i:3495730 original size:12 final size:12
Alignment explanation
Indices: 3495711--3495739 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
3495701 TATGATTAAA
3495711 AATA-TTATCTT
1 AATATTTATCTT
3495722 AATATTTATCTT
1 AATATTTATCTT
3495734 AATATT
1 AATATT
3495740 AATTAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (12 bp):
AATATTTATCTT
Found at i:3503145 original size:29 final size:29
Alignment explanation
Indices: 3503112--3503368 Score: 212
Period size: 28 Copynumber: 8.7 Consensus size: 29
3503102 TATCAAATTA
3503112 GGTTAGGGTTTTAAATTAAATTAGGTTAGGGTTAG
1 GGTTAGGGTTTTAAATT-AA--A--TTA-GGTTAG
*
3503147 GGTTAGGGTTTTATAATTAAATTATGTTAGG
1 GGTTAGGGTTTTA-AATTAAATTAGGTTA-G
*
3503178 TTAGGTTAGGGTTTT--A-T-AATT-GAATTA-
1 ---GGTTAGGGTTTTAAATTAAATTAG-GTTAG
3503205 GGTTAGGGTTTTAAATTAAATTAGGTTAG
1 GGTTAGGGTTTTAAATTAAATTAGGTTAG
**
3503234 GGTTAGGG-TTTATAATTAAATTAAATT-G
1 GGTTAGGGTTTTA-AATTAAATTAGGTTAG
* * *
3503262 GGTTTGGGTTTTTAATTAAATTATGTTA-
1 GGTTAGGGTTTTAAATTAAATTAGGTTAG
* *
3503290 GGTTATGGTTTTTAATTAAATTAGGTTA-
1 GGTTAGGGTTTTAAATTAAATTAGGTTAG
*
3503318 GGTTAGGGTTTTATAATTGAATTAGGTTAG
1 GGTTAGGGTTTTA-AATTAAATTAGGTTAG
3503348 GGTTAGGG-TTTATAATTAAAT
1 GGTTAGGGTTTTA-AATTAAAT
3503369 CAAATAATAT
Statistics
Matches: 188, Mismatches: 17, Indels: 40
0.77 0.07 0.16
Matches are distributed among these distances:
24 12 0.06
26 1 0.01
27 1 0.01
28 67 0.36
29 57 0.30
30 13 0.07
31 5 0.03
33 1 0.01
34 12 0.06
35 15 0.08
36 4 0.02
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (29 bp):
GGTTAGGGTTTTAAATTAAATTAGGTTAG
Found at i:3503194 original size:23 final size:23
Alignment explanation
Indices: 3503168--3503237 Score: 79
Period size: 23 Copynumber: 3.0 Consensus size: 23
3503158 TATAATTAAA
* *
3503168 TTATGTTAGGTTAGGTTAGGGTT
1 TTATATTAGATTAGGTTAGGGTT
3503191 TTATAATT-GAATTAGGTTAGGGTT
1 TTAT-ATTAG-ATTAGGTTAGGGTT
* *
3503215 TTAAATTAAATTAGGTTAGGGTT
1 TTATATTAGATTAGGTTAGGGTT
3503238 AGGGTTTATA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
23 22 0.55
24 18 0.45
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (23 bp):
TTATATTAGATTAGGTTAGGGTT
Found at i:3503205 original size:24 final size:23
Alignment explanation
Indices: 3503178--3503237 Score: 102
Period size: 23 Copynumber: 2.6 Consensus size: 23
3503168 TTATGTTAGG
*
3503178 TTAGGTTAGGGTTTTATAATTGAA
1 TTAGGTTAGGGTTTTA-AATTAAA
3503202 TTAGGTTAGGGTTTTAAATTAAA
1 TTAGGTTAGGGTTTTAAATTAAA
3503225 TTAGGTTAGGGTT
1 TTAGGTTAGGGTT
3503238 AGGGTTTATA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
23 19 0.54
24 16 0.46
ACGTcount: A:0.28, C:0.00, G:0.27, T:0.45
Consensus pattern (23 bp):
TTAGGTTAGGGTTTTAAATTAAA
Found at i:3503341 original size:114 final size:113
Alignment explanation
Indices: 3503146--3503373 Score: 320
Period size: 114 Copynumber: 2.0 Consensus size: 113
3503136 GTTAGGGTTA
3503146 GGGTTAGGGTTTTATAATTAAATTATGTTAGGTTAGGTTAGGGTTTTATAATTGAATTAGGTTAG
1 GGGTTAGGGTTTTATAATTAAATTATGTTAGGTTAGGTT--GGTTTTATAATTGAATTAGGTTAG
*
3503211 GGTTTTAAATTAAATTAGGTTAGGGTTAGGGTTTATAATTAAATTAAATT
64 GGTTTTAAATTAAATTAGGTTAGGGTTAGGGTTTATAATTAAATCAAATT
* * *
3503261 GGGTTTGGGTTTT-TAATTAAATTATGTTAGGTTATGGTT--TTTAATTAAATT-AGGTTAGGTT
1 GGGTTAGGGTTTTATAATTAAATTATGTTAGGTTA-GGTTGGTTTTA-T-AATTGA-ATTAGGTT
*
3503322 AGGGTTTTATAATTGAATTAGGTTAGGGTTAGGGTTTATAATTAAATCAAAT
62 AGGGTTTTA-AATTAAATTAGGTTAGGGTTAGGGTTTATAATTAAATCAAAT
3503374 AATATCAAAA
Statistics
Matches: 103, Mismatches: 5, Indels: 11
0.87 0.04 0.09
Matches are distributed among these distances:
111 4 0.04
112 2 0.02
113 20 0.19
114 61 0.59
115 16 0.16
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.45
Consensus pattern (113 bp):
GGGTTAGGGTTTTATAATTAAATTATGTTAGGTTAGGTTGGTTTTATAATTGAATTAGGTTAGGG
TTTTAAATTAAATTAGGTTAGGGTTAGGGTTTATAATTAAATCAAATT
Found at i:3506305 original size:29 final size:29
Alignment explanation
Indices: 3506264--3506321 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
3506254 CAGAATATAT
3506264 TAAAAATTTTAAAATTAT-TTTAAAAAAA
1 TAAAAATTTTAAAATTATCTTTAAAAAAA
*
3506292 TAAAAATATTTAAAATTTTCTTTAAAAAAA
1 TAAAAAT-TTTAAAATTATCTTTAAAAAAA
3506322 ATGAAATTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 7 0.26
29 10 0.37
30 10 0.37
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (29 bp):
TAAAAATTTTAAAATTATCTTTAAAAAAA
Found at i:3506439 original size:22 final size:21
Alignment explanation
Indices: 3506412--3506480 Score: 84
Period size: 22 Copynumber: 3.1 Consensus size: 21
3506402 CGAGAGTTTA
3506412 AGAGAATTTTGAAAGGAAATTG
1 AGAGAATTTTG-AAGGAAATTG
**
3506434 AGAGAATTTTTGAAGGACTTTG
1 AGAGAA-TTTTGAAGGAAATTG
*
3506456 AGAGAATTTTGGAATGAAATTG
1 AGAGAATTTT-GAAGGAAATTG
3506478 AGA
1 AGA
3506481 TAGGATTTGT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
21 4 0.10
22 31 0.77
23 5 0.12
ACGTcount: A:0.41, C:0.01, G:0.28, T:0.30
Consensus pattern (21 bp):
AGAGAATTTTGAAGGAAATTG
Found at i:3506443 original size:52 final size:51
Alignment explanation
Indices: 3506354--3506459 Score: 124
Period size: 52 Copynumber: 2.1 Consensus size: 51
3506344 ATTTAATATG
* * *
3506354 GAGTTTAGAGATTTTTTGAAGGAAATCGTGAGGATTTTGGAAGGAATTCGA
1 GAGTTTAGAGATATTTTGAAGGAAATCGAGAGAATTTTGGAAGGAATTCGA
* * * *
3506405 GAGTTTAAGAGA-ATTTTGAAAGGAAATTGAGAGAATTTTTGAAGGACTTTGA
1 GAGTTT-AGAGATATTTTG-AAGGAAATCGAGAGAATTTTGGAAGGAATTCGA
3506457 GAG
1 GAG
3506460 AATTTTGGAA
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
51 11 0.24
52 35 0.76
ACGTcount: A:0.35, C:0.03, G:0.30, T:0.32
Consensus pattern (51 bp):
GAGTTTAGAGATATTTTGAAGGAAATCGAGAGAATTTTGGAAGGAATTCGA
Found at i:3506737 original size:29 final size:26
Alignment explanation
Indices: 3506691--3506748 Score: 71
Period size: 29 Copynumber: 2.1 Consensus size: 26
3506681 GATTTCGGGG
3506691 AAAACGGCCCATTCCGGTAAATAATTAA
1 AAAACGGCCCATTCCGGTAAAT--TTAA
* *
3506719 AAAACCGGCCTATTTCGGTAAATTTAA
1 AAAA-CGGCCCATTCCGGTAAATTTAA
3506746 AAA
1 AAA
3506749 GAAAAGTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 7 0.26
28 4 0.15
29 16 0.59
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (26 bp):
AAAACGGCCCATTCCGGTAAATTTAA
Found at i:3512216 original size:17 final size:18
Alignment explanation
Indices: 3512180--3512217 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
3512170 ATTGCTTTTC
* *
3512180 AAAAGTGTTTTTGGGCCA
1 AAAAGTGCTTTTGAGCCA
3512198 AAAAGTGCTTTTGAG-CA
1 AAAAGTGCTTTTGAGCCA
3512215 AAA
1 AAA
3512218 GCTAAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.29
Consensus pattern (18 bp):
AAAAGTGCTTTTGAGCCA
Found at i:3512326 original size:18 final size:18
Alignment explanation
Indices: 3512300--3512336 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
3512290 TTAGCAATGC
3512300 TTTTATCCAAAAAGTGTT
1 TTTTATCCAAAAAGTGTT
*
3512318 TTTTGTCCAAAAAGTGTT
1 TTTTATCCAAAAAGTGTT
3512336 T
1 T
3512337 ATTAGAAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (18 bp):
TTTTATCCAAAAAGTGTT
Found at i:3513711 original size:13 final size:13
Alignment explanation
Indices: 3513689--3513732 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
3513679 TTTAACAATA
*
3513689 CTTTTGAAAAGTG
1 CTTTTAAAAAGTG
3513702 CTTTTAAAAAGTG
1 CTTTTAAAAAGTG
*
3513715 -TTGTGAAAAAGTG
1 CTT-TTAAAAAGTG
3513728 CTTTT
1 CTTTT
3513733 TATAAGTACT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 2 0.08
13 22 0.85
14 2 0.08
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (13 bp):
CTTTTAAAAAGTG
Found at i:3513750 original size:26 final size:26
Alignment explanation
Indices: 3513679--3513750 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
3513669 TTAGGGCTAG
*
3513679 TTTAACAA-TACTTTTGAAAAGTGCT
1 TTTAAAAAGTACTTTTGAAAAGTGCT
* *
3513704 TTTAAAAAGT-GTTGTGAAAAAGTGCT
1 TTTAAAAAGTACTTTTG-AAAAGTGCT
* *
3513730 TTTTATAAGTACTTTTGAAAA
1 TTTAAAAAGTACTTTTGAAAA
3513751 TTTTTGAAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
25 11 0.30
26 22 0.59
27 4 0.11
ACGTcount: A:0.38, C:0.07, G:0.15, T:0.40
Consensus pattern (26 bp):
TTTAAAAAGTACTTTTGAAAAGTGCT
Found at i:3517576 original size:3 final size:3
Alignment explanation
Indices: 3517568--3517607 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
3517558 TAACCAATTT
3517568 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
3517608 ACAATACTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:3518783 original size:10 final size:10
Alignment explanation
Indices: 3518770--3518798 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
3518760 AAGTGATCAC
3518770 TTTCCTCTCG
1 TTTCCTCTCG
3518780 TTTCCTCTCG
1 TTTCCTCTCG
3518790 TTTCCTCTC
1 TTTCCTCTC
3518799 CTAATCAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.41, G:0.07, T:0.52
Consensus pattern (10 bp):
TTTCCTCTCG
Found at i:3520908 original size:7 final size:7
Alignment explanation
Indices: 3520896--3520924 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
3520886 GAAGAATTGT
3520896 AGTTTGC
1 AGTTTGC
3520903 AGTTTGC
1 AGTTTGC
3520910 AGTTTGC
1 AGTTTGC
3520917 AGTTTGC
1 AGTTTGC
3520924 A
1 A
3520925 CCTAGCTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.17, C:0.14, G:0.28, T:0.41
Consensus pattern (7 bp):
AGTTTGC
Found at i:3529615 original size:2 final size:2
Alignment explanation
Indices: 3529608--3529640 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
3529598 NNNCAGACTA
3529608 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3529641 CCTTGAATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3537822 original size:2 final size:2
Alignment explanation
Indices: 3537815--3537842 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
3537805 GTACAATCTC
3537815 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3537843 TAAAAAGCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3538184 original size:21 final size:24
Alignment explanation
Indices: 3538133--3538189 Score: 66
Period size: 27 Copynumber: 2.4 Consensus size: 24
3538123 AATTGATGTG
3538133 AACTTTTGTAGTACATAAATCAAACAA
1 AACTTTTGTAGTACATAAATC--AC-A
3538160 AACTTTTGTAGTACATAAA-C-C-
1 AACTTTTGTAGTACATAAATCACA
3538181 AACTTTTGT
1 AACTTTTGT
3538190 GAATAAAACC
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
21 9 0.30
23 1 0.03
26 1 0.03
27 19 0.63
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (24 bp):
AACTTTTGTAGTACATAAATCACA
Found at i:3545678 original size:25 final size:25
Alignment explanation
Indices: 3545643--3545718 Score: 109
Period size: 25 Copynumber: 3.0 Consensus size: 25
3545633 CAAAGTCCCG
3545643 ATTCACAGCTCGTGTGAGCAA-TAT
1 ATTCACAGCTCGTGTGAGCAATTAT
* *
3545667 ATTTCACAGCTCATGTTAGCAATTAT
1 A-TTCACAGCTCGTGTGAGCAATTAT
3545693 ATTCACAGCTCGTGTGAGCAAATTAT
1 ATTCACAGCTCGTGTGAGC-AATTAT
3545719 GTCATGTGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
24 1 0.02
25 34 0.76
26 10 0.22
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (25 bp):
ATTCACAGCTCGTGTGAGCAATTAT
Done.