Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 ID=Chr11-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62681010
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1052928 characters in sequence are not A, C, G, or T
File 93 of 210
Found at i:27220381 original size:33 final size:37
Alignment explanation
Indices: 27220305--27220424 Score: 99
Period size: 38 Copynumber: 3.3 Consensus size: 37
27220295 CATAAAATAC
* *
27220305 GAAAAAGAATGAAAGAAAAGGAAAGGGGAGGAAAGAAA
1 GAAAAAAAAAGAAAGAAAAGGAAA-GGGAGGAAAGAAA
* * *
27220343 GAAAAATAAGGAAAGAAAAGGAAA-GGA-G-AAGAGA
1 GAAAAAAAAAGAAAGAAAAGGAAAGGGAGGAAAGAAA
*
27220377 -AAAAAAAAAGAAAGAAGAA-GAAGAGGGAAGGAAGGAAA
1 GAAAAAAAAAGAAAGAA-AAGGAA-AGGG-AGGAAAGAAA
27220415 -AAAAAGAAAA
1 GAAAAA-AAAA
27220425 TAATGTAATT
Statistics
Matches: 68, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
33 17 0.25
34 8 0.12
35 3 0.04
36 4 0.06
37 1 0.01
38 31 0.46
39 4 0.06
ACGTcount: A:0.68, C:0.00, G:0.31, T:0.02
Consensus pattern (37 bp):
GAAAAAAAAAGAAAGAAAAGGAAAGGGAGGAAAGAAA
Found at i:27221148 original size:19 final size:18
Alignment explanation
Indices: 27221119--27221158 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
27221109 AATATATTGG
27221119 TATTTTTTAATATTTTAT
1 TATTTTTTAATATTTTAT
*
27221137 TATTTTTGTAATCTTTTAT
1 TATTTTT-TAATATTTTAT
27221156 TAT
1 TAT
27221159 GAGTTTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.70
Consensus pattern (18 bp):
TATTTTTTAATATTTTAT
Found at i:27221247 original size:28 final size:28
Alignment explanation
Indices: 27221195--27221263 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
27221185 AATAAAAAAA
*
27221195 TTACCAAAATAT-TATAACTTTTTTTAT
1 TTACCAAAATATATATAAATTTTTTTAT
27221222 TTACCAAAATATATATAAATTTTTTTAT
1 TTACCAAAATATATATAAATTTTTTTAT
27221250 TTACCAAAATATAT
1 TTACCAAAATATAT
27221264 CAAAAAAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 12 0.30
28 28 0.70
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (28 bp):
TTACCAAAATATATATAAATTTTTTTAT
Found at i:27221288 original size:17 final size:16
Alignment explanation
Indices: 27221266--27221297 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
27221256 AAATATATCA
27221266 AAAAAAAAGTAAAAAAC
1 AAAAAAAA-TAAAAAAC
27221283 AAAAAAAATAAAAAA
1 AAAAAAAATAAAAAA
27221298 AACAGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.88, C:0.03, G:0.03, T:0.06
Consensus pattern (16 bp):
AAAAAAAATAAAAAAC
Found at i:27221299 original size:9 final size:9
Alignment explanation
Indices: 27221276--27221311 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
27221266 AAAAAAAAGT
27221276 AAAAAACAA
1 AAAAAACAA
*
27221285 AAAAAATAA
1 AAAAAACAA
27221294 AAAAAACAGA
1 AAAAAACA-A
27221304 AAAAAACA
1 AAAAAACA
27221312 CACACTAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 15 0.62
10 9 0.38
ACGTcount: A:0.86, C:0.08, G:0.03, T:0.03
Consensus pattern (9 bp):
AAAAAACAA
Found at i:27222965 original size:47 final size:47
Alignment explanation
Indices: 27222909--27223202 Score: 480
Period size: 47 Copynumber: 6.3 Consensus size: 47
27222899 TTAATATACC
* * * * * *
27222909 CAAAATTGGACAGCATTATACATCAAATTAGACAGCTTAAATATACT
1 CAAAATTGGACAGCATTATACATTAAAATGGACAGCATCAATACACT
* *
27222956 CACAATTGGACAGCATTATATATTAAAATGGACAGCATCAATACACT
1 CAAAATTGGACAGCATTATACATTAAAATGGACAGCATCAATACACT
27223003 CAAAATTGGACAGCATTATACATTAAAATGGACAGCATCAATACACT
1 CAAAATTGGACAGCATTATACATTAAAATGGACAGCATCAATACACT
*
27223050 CAAAATTGGACAGCATTATACATTAAAATGGGCAGCATCAATACACT
1 CAAAATTGGACAGCATTATACATTAAAATGGACAGCATCAATACACT
*
27223097 CAAAATTGGACAGCATTACACATTAAAATGGACAGCATCAATACACT
1 CAAAATTGGACAGCATTATACATTAAAATGGACAGCATCAATACACT
* *
27223144 CAAAATTGGACAGCATTACACATTAAAATGGGCAGCATCAATACACT
1 CAAAATTGGACAGCATTATACATTAAAATGGACAGCATCAATACACT
27223191 CAAAATTGGACA
1 CAAAATTGGACA
27223203 TCAAATTTGG
Statistics
Matches: 233, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 233 1.00
ACGTcount: A:0.44, C:0.19, G:0.13, T:0.23
Consensus pattern (47 bp):
CAAAATTGGACAGCATTATACATTAAAATGGACAGCATCAATACACT
Found at i:27224219 original size:28 final size:27
Alignment explanation
Indices: 27224187--27224285 Score: 112
Period size: 28 Copynumber: 3.6 Consensus size: 27
27224177 TTAATAAGTA
*
27224187 CGCACACTTAGTGCTTAATAATCAAACT
1 CGCACACTTAGTGCTT-ATAATTAAACT
* *
27224215 CGCACACTTAGTGCTT-TACCCTTATACT
1 CGCACACTTAGTGCTTATA--ATTAAACT
27224243 CGCACACTTAGTGCATT-TCAATTAAACT
1 CGCACACTTAGTGC-TTAT-AATTAAACT
27224271 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27224286 AATCTCATTA
Statistics
Matches: 62, Mismatches: 5, Indels: 9
0.82 0.07 0.12
Matches are distributed among these distances:
26 2 0.03
27 1 0.02
28 55 0.89
29 3 0.05
30 1 0.02
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.31
Consensus pattern (27 bp):
CGCACACTTAGTGCTTATAATTAAACT
Found at i:27226833 original size:15 final size:14
Alignment explanation
Indices: 27226793--27226821 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
27226783 TTTTTGTATC
27226793 AATTTAATTATTCT
1 AATTTAATTATTCT
27226807 AATTTAATTATTCT
1 AATTTAATTATTCT
27226821 A
1 A
27226822 GTTTTAGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (14 bp):
AATTTAATTATTCT
Found at i:27227047 original size:10 final size:10
Alignment explanation
Indices: 27227032--27227132 Score: 79
Period size: 10 Copynumber: 10.5 Consensus size: 10
27227022 TTCTCTTCTC
27227032 CTTTCCTTTT
1 CTTTCCTTTT
27227042 CTTTCCTTATT
1 CTTTCCTT-TT
27227053 -TTT-C-TTT
1 CTTTCCTTTT
***
27227060 CTTTCCTCCC
1 CTTTCCTTTT
27227070 CTTTCCTTTT
1 CTTTCCTTTT
27227080 CTTTCC--TT
1 CTTTCCTTTT
27227088 CTTT-CTCTTT
1 CTTTCCT-TTT
* *
27227098 CTTTCCTCTC
1 CTTTCCTTTT
27227108 CTTTCCTTTT
1 CTTTCCTTTT
* *
27227118 CCTTCTTTTT
1 CTTTCCTTTT
27227128 CTTTC
1 CTTTC
27227133 TTCCTTTCTT
Statistics
Matches: 70, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
7 3 0.04
8 10 0.14
9 2 0.03
10 51 0.73
11 4 0.06
ACGTcount: A:0.01, C:0.35, G:0.00, T:0.64
Consensus pattern (10 bp):
CTTTCCTTTT
Found at i:27227066 original size:28 final size:28
Alignment explanation
Indices: 27227032--27227115 Score: 82
Period size: 28 Copynumber: 3.0 Consensus size: 28
27227022 TTCTCTTCTC
*
27227032 CTTTCCTTTTCTTTCCTTATT-TTTCTTT
1 CTTTCCTTTTCTTTCCTT-TTCTTTCCTT
***
27227060 CTTTCCTCCCCTTTCCTTTTCTTTCCTT
1 CTTTCCTTTTCTTTCCTTTTCTTTCCTT
* *
27227088 CTTT-CTCTTTCTTTCCTCTCCTTTCCTT
1 CTTTCCT-TTTCTTTCCTTTTCTTTCCTT
27227116 TTCCTTCTTT
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
27 4 0.09
28 41 0.91
ACGTcount: A:0.01, C:0.36, G:0.00, T:0.63
Consensus pattern (28 bp):
CTTTCCTTTTCTTTCCTTTTCTTTCCTT
Found at i:27227074 original size:38 final size:38
Alignment explanation
Indices: 27227031--27227140 Score: 150
Period size: 38 Copynumber: 2.9 Consensus size: 38
27227021 TTTCTCTTCT
27227031 CCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCTCC
1 CCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCTCC
* * *
27227069 CCTTTCCTTTTCTTTCCTTCTTTCTCTTTCTTTCCTCT
1 CCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCTCC
* * *
27227107 CCTTTCCTTTTCCTT-CTTTTTCTTTCTTCCTTTC
1 CCTTTCCTTTTCTTTCCTTATT-TTTCTTTCTTTC
27227141 TTTCTTCTTC
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
37 5 0.08
38 59 0.92
ACGTcount: A:0.01, C:0.35, G:0.00, T:0.64
Consensus pattern (38 bp):
CCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCTCC
Found at i:27227124 original size:28 final size:27
Alignment explanation
Indices: 27227070--27227164 Score: 67
Period size: 28 Copynumber: 3.5 Consensus size: 27
27227060 CTTTCCTCCC
* *
27227070 CTTTCCTTTTCTTTCCTTCTT-TCTCTTT
1 CTTTCCTCTCCTTTCCTT-TTCT-TCTTT
27227098 CTTTCCTCTCCTTTCCTTTTCCTTCTTTTT
1 CTTTCCTCTCCTTTCCTTTT-CTTC--TTT
27227128 CTTT-CT-TCCTTT-C-TTTCTTC-TT
1 CTTTCCTCTCCTTTCCTTTTCTTCTTT
*
27227150 CTTCCCCTCTCCTTT
1 CTT-TCCTCTCCTTT
27227165 TTCCCCCCAC
Statistics
Matches: 57, Mismatches: 3, Indels: 17
0.74 0.04 0.22
Matches are distributed among these distances:
22 5 0.09
24 2 0.04
25 10 0.18
26 3 0.05
27 3 0.05
28 24 0.42
29 3 0.05
30 7 0.12
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (27 bp):
CTTTCCTCTCCTTTCCTTTTCTTCTTT
Found at i:27227133 original size:10 final size:10
Alignment explanation
Indices: 27227086--27227152 Score: 53
Period size: 10 Copynumber: 6.5 Consensus size: 10
27227076 TTTTCTTTCC
*
27227086 TTCTTTCTCT
1 TTCTTTCTTT
* *
27227096 TTCTTTCCTC
1 TTCTTTCTTT
* *
27227106 TCCTTTCCTT
1 TTCTTTCTTT
*
27227116 TTCCTTCTTT
1 TTCTTTCTTT
27227126 TTCTTTCTTCCT
1 TTCTTTCTT--T
*
27227138 TTCTTTCTTC
1 TTCTTTCTTT
27227148 TTCTT
1 TTCTT
27227153 CCCCTCTCCT
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
10 35 0.78
12 10 0.22
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (10 bp):
TTCTTTCTTT
Found at i:27227145 original size:22 final size:23
Alignment explanation
Indices: 27227110--27227152 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
27227100 TTCCTCTCCT
*
27227110 TTCCTTTTCCTTCTTTTTCTTTC
1 TTCCTTTTCCTTCTTCTTCTTTC
*
27227133 TTCC-TTTCTTTCTTCTTCTT
1 TTCCTTTTCCTTCTTCTTCTT
27227153 CCCCTCTCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (23 bp):
TTCCTTTTCCTTCTTCTTCTTTC
Found at i:27227342 original size:27 final size:27
Alignment explanation
Indices: 27227311--27227362 Score: 88
Period size: 27 Copynumber: 1.9 Consensus size: 27
27227301 TTTTTTGATA
27227311 TATTTT-AGTAAATAAAAAAATTATATG
1 TATTTTGA-TAAATAAAAAAATTATATG
27227338 TATTTTGATAAATAAAAAAATTATA
1 TATTTTGATAAATAAAAAAATTATA
27227363 ACATTTTGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
27 23 0.96
28 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (27 bp):
TATTTTGATAAATAAAAAAATTATATG
Found at i:27227368 original size:26 final size:27
Alignment explanation
Indices: 27227319--27227370 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
27227309 TATATTTTAG
**
27227319 TAAATAAAAAAATTATATGTATTTTGA
1 TAAATAAAAAAATTATATACATTTTGA
27227346 TAAATAAAAAAATTATA-ACATTTTG
1 TAAATAAAAAAATTATATACATTTTG
27227371 GTAATTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.54, C:0.02, G:0.06, T:0.38
Consensus pattern (27 bp):
TAAATAAAAAAATTATATACATTTTGA
Found at i:27239566 original size:41 final size:41
Alignment explanation
Indices: 27239509--27239631 Score: 219
Period size: 41 Copynumber: 3.0 Consensus size: 41
27239499 AACCTAATTG
* *
27239509 GGAAAATAATTCCCTTATTCTAATAAGCTACTTAAAGATAA
1 GGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
27239550 GGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
1 GGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
*
27239591 GGAAAATAATACCCTTATTCTAATAAACTACTAAAAGATAA
1 GGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
27239632 AATAAAATAT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 79 1.00
ACGTcount: A:0.48, C:0.15, G:0.08, T:0.29
Consensus pattern (41 bp):
GGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
Found at i:27243014 original size:41 final size:41
Alignment explanation
Indices: 27242969--27243049 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
27242959 AATCTAATTG
* *
27242969 GGAAAATAATTTCCTTATTCTAATAAACTACTAAAAGATAA
1 GGAAAATAATTCCCTTATTCTAAAAAACTACTAAAAGATAA
27243010 GGAAAATAATTCCCTTATTCTAAAAAACTACTAAAAGATA
1 GGAAAATAATTCCCTTATTCTAAAAAACTACTAAAAGATA
27243050 TAATAAAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.49, C:0.14, G:0.07, T:0.30
Consensus pattern (41 bp):
GGAAAATAATTCCCTTATTCTAAAAAACTACTAAAAGATAA
Found at i:27243063 original size:41 final size:41
Alignment explanation
Indices: 27242970--27243063 Score: 136
Period size: 41 Copynumber: 2.3 Consensus size: 41
27242960 ATCTAATTGG
* * *
27242970 GAAAATAATTTCCTTATTCTAATAAACTACTAAAAGATAAG
1 GAAAATAATTCCCTTATTCTAAAAAACTACTAAAAGATAAA
27243011 GAAAATAATTCCCTTATTCTAAAAAACTACTAAAAGATATAA
1 GAAAATAATTCCCTTATTCTAAAAAACTACTAAAAGATA-AA
*
27243053 TAAAAT-ATTCC
1 GAAAATAATTCC
27243064 TAGAATATCT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 42 0.88
42 6 0.12
ACGTcount: A:0.50, C:0.14, G:0.05, T:0.31
Consensus pattern (41 bp):
GAAAATAATTCCCTTATTCTAAAAAACTACTAAAAGATAAA
Found at i:27254002 original size:165 final size:165
Alignment explanation
Indices: 27253730--27254225 Score: 920
Period size: 165 Copynumber: 3.0 Consensus size: 165
27253720 GAAAGTTGAT
*
27253730 ATTCCTCTCAATTGACAAATACTAGAAAACTAAAGTGGGGCTGAAGTGCCACAATATGAAAGGTA
1 ATTCCTCTCAATTGACAAATACTAGAAAACTAAAGTGGGGCTGAAGTGCTACAATATGAAAGGTA
27253795 ACTCAAAAAAAGTAGCTGTTGATGCTAATCAGATCACAGGACAATAGCAAATAGGTGAAATGGGG
66 ACTCAAAAAAAGTAGCTGTTGATGCTAATCAGATCACAGGACAATAGCAAATAGGTGAAATGGGG
27253860 TGAAAAATTTTGGTCTAAGCTGAAAATCAGATTTA
131 TGAAAAATTTTGGTCTAAGCTGAAAATCAGATTTA
27253895 ATTCCTCTCAATTGACAAATACTAGAAAACTAAAGTGGGGCTGAAGTGCTACAATATGAAAGGTA
1 ATTCCTCTCAATTGACAAATACTAGAAAACTAAAGTGGGGCTGAAGTGCTACAATATGAAAGGTA
* * *
27253960 ACTCGAAAAAAGCAGCTGTTGATGCCAATCAGATCACAGGACAATAGCAAATAGGTGAAATGGGG
66 ACTCAAAAAAAGTAGCTGTTGATGCTAATCAGATCACAGGACAATAGCAAATAGGTGAAATGGGG
27254025 TGAAAAATTTTGGTCTAAGCTGAAAATCAGATTTA
131 TGAAAAATTTTGGTCTAAGCTGAAAATCAGATTTA
* *
27254060 ATTCCTCTCAATGGACAAATACTAGAAAACTAAAGTGGGGTTGAAGTGCTACAATATGAAAGGTA
1 ATTCCTCTCAATTGACAAATACTAGAAAACTAAAGTGGGGCTGAAGTGCTACAATATGAAAGGTA
* *
27254125 ACTCAAAAAAAGTAGTTGTTGATGCTAATCAGATCACAGGACAATAGCAAGTAGGTGAAATGGGG
66 ACTCAAAAAAAGTAGCTGTTGATGCTAATCAGATCACAGGACAATAGCAAATAGGTGAAATGGGG
27254190 TGAAAAATTTTGGTCTAAGCTGAAAATCAGATTTA
131 TGAAAAATTTTGGTCTAAGCTGAAAATCAGATTTA
27254225 A
1 A
27254226 CAAGCTGATT
Statistics
Matches: 320, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
165 320 1.00
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.24
Consensus pattern (165 bp):
ATTCCTCTCAATTGACAAATACTAGAAAACTAAAGTGGGGCTGAAGTGCTACAATATGAAAGGTA
ACTCAAAAAAAGTAGCTGTTGATGCTAATCAGATCACAGGACAATAGCAAATAGGTGAAATGGGG
TGAAAAATTTTGGTCTAAGCTGAAAATCAGATTTA
Found at i:27261299 original size:17 final size:18
Alignment explanation
Indices: 27261266--27261300 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
27261256 CTTGTCAATA
*
27261266 TTTTTAAATTATAAAAAG
1 TTTTCAAATTATAAAAAG
27261284 TTTTCAAATTATAAAAA
1 TTTTCAAATTATAAAAA
27261301 AAATTTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (18 bp):
TTTTCAAATTATAAAAAG
Found at i:27261310 original size:18 final size:17
Alignment explanation
Indices: 27261268--27261313 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
27261258 TGTCAATATT
**
27261268 TTTAAATTATAAAAAGT
1 TTTAAATTATAAAAAAA
27261285 TTTCAAATTATAAAAAAAA
1 TTT-AAATTAT-AAAAAAA
27261304 TTTAAATTAT
1 TTTAAATTAT
27261314 TCAATCAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 3 0.12
18 14 0.56
19 8 0.32
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (17 bp):
TTTAAATTATAAAAAAA
Found at i:27261522 original size:24 final size:26
Alignment explanation
Indices: 27261477--27261530 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 26
27261467 TCGACTTTTT
*
27261477 TTTTTTAAATTTTGATAAGGTTAGGG
1 TTTTTTAAATTTTGATAAGGTTAGGA
**
27261503 TTTTTT-AATTTTG-TTGGGTTAGGA
1 TTTTTTAAATTTTGATAAGGTTAGGA
27261527 TTTT
1 TTTT
27261531 ATGGGCGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 12 0.48
25 7 0.28
26 6 0.24
ACGTcount: A:0.20, C:0.00, G:0.22, T:0.57
Consensus pattern (26 bp):
TTTTTTAAATTTTGATAAGGTTAGGA
Found at i:27270895 original size:9 final size:9
Alignment explanation
Indices: 27270881--27270906 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
27270871 GAAAGAATTG
27270881 AGAGAGTTA
1 AGAGAGTTA
27270890 AGAGAGTTA
1 AGAGAGTTA
27270899 AGAGAGTT
1 AGAGAGTT
27270907 GGATTTGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.35, T:0.23
Consensus pattern (9 bp):
AGAGAGTTA
Found at i:27274242 original size:40 final size:40
Alignment explanation
Indices: 27274187--27274395 Score: 242
Period size: 40 Copynumber: 5.2 Consensus size: 40
27274177 GTACAAACAG
* *
27274187 GTGCATTCAGGGGTACCGAAGTATAAACAAGGGCACTTAT
1 GTGCATTCAAGGGTACCGAAGTACAAACAAGGGCACTTAT
* * *
27274227 GTGCATTCAAGGGTACTGAAGTACAAACAAGAGCATTTAT
1 GTGCATTCAAGGGTACCGAAGTACAAACAAGGGCACTTAT
* * * *
27274267 GTGCATGCAAGGGTATCAAAGTACAAACAGGGGCACTTAT
1 GTGCATTCAAGGGTACCGAAGTACAAACAAGGGCACTTAT
* * *
27274307 ATGCATTCAGGGGTACCGAAGTACAAA-TAGAGGCACTTAT
1 GTGCATTCAAGGGTACCGAAGTACAAACAAG-GGCACTTAT
* * * *
27274347 GTGTATTC-AGGAGTACCAAAGTACAAACAGGGGCACCTAT
1 GTGCATTCAAGG-GTACCGAAGTACAAACAAGGGCACTTAT
27274387 GTGCATTCA
1 GTGCATTCA
27274396 TATATATATA
Statistics
Matches: 138, Mismatches: 27, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.02
40 134 0.97
41 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (40 bp):
GTGCATTCAAGGGTACCGAAGTACAAACAAGGGCACTTAT
Found at i:27274257 original size:20 final size:20
Alignment explanation
Indices: 27274197--27274257 Score: 50
Period size: 20 Copynumber: 3.0 Consensus size: 20
27274187 GTGCATTCAG
* *
27274197 GGGTACCGAAGTATAAACAA
1 GGGTACTGAAGTACAAACAA
* * * * **
27274217 GGGCACTTATGTGCATTCAA
1 GGGTACTGAAGTACAAACAA
27274237 GGGTACTGAAGTACAAACAA
1 GGGTACTGAAGTACAAACAA
27274257 G
1 G
27274258 AGCATTTATG
Statistics
Matches: 27, Mismatches: 14, Indels: 0
0.66 0.34 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20
Consensus pattern (20 bp):
GGGTACTGAAGTACAAACAA
Found at i:27274321 original size:80 final size:80
Alignment explanation
Indices: 27274187--27274395 Score: 269
Period size: 80 Copynumber: 2.6 Consensus size: 80
27274177 GTACAAACAG
* * * * *
27274187 GTGCATTCAGGGGTACCGAAGTATAAACAAGGGCACTTATGTGCATTCAAGGGTACTGAAGTACA
1 GTGCATTCAAGGGTACCAAAGTACAAACAGGGGCACTTATGTGCATTCAAGGGTACCGAAGTACA
*
27274252 AACAAGA-GCATTTAT
66 AA-AAGAGGCACTTAT
* * * *
27274267 GTGCATGCAAGGGTATCAAAGTACAAACAGGGGCACTTATATGCATTCAGGGGTACCGAAGTACA
1 GTGCATTCAAGGGTACCAAAGTACAAACAGGGGCACTTATGTGCATTCAAGGGTACCGAAGTACA
*
27274332 AATAGAGGCACTTAT
66 AAAAGAGGCACTTAT
* *
27274347 GTGTATTC-AGGAGTACCAAAGTACAAACAGGGGCACCTATGTGCATTCA
1 GTGCATTCAAGG-GTACCAAAGTACAAACAGGGGCACTTATGTGCATTCA
27274396 TATATATATA
Statistics
Matches: 111, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
79 6 0.05
80 105 0.95
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (80 bp):
GTGCATTCAAGGGTACCAAAGTACAAACAGGGGCACTTATGTGCATTCAAGGGTACCGAAGTACA
AAAAGAGGCACTTAT
Found at i:27276299 original size:25 final size:25
Alignment explanation
Indices: 27276271--27276320 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
27276261 CTAGATAATA
*
27276271 TGCCAC-AAGGTCTTTACAGAATATG
1 TGCCACAAAGG-CTTTACAAAATATG
27276296 TGCCACAAAGGCTTTACAAAATATG
1 TGCCACAAAGGCTTTACAAAATATG
27276321 CCATGACCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (25 bp):
TGCCACAAAGGCTTTACAAAATATG
Found at i:27280141 original size:27 final size:27
Alignment explanation
Indices: 27280121--27280585 Score: 492
Period size: 27 Copynumber: 17.4 Consensus size: 27
27280111 GGGTATAACA
* *
27280121 GTCATTTTACCTTATGGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
27280148 GTCATTTTACCCTATGAGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
27280175 GTCATTTCACCCTAT-GGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
27280201 GTCATTTTACCTTATGGGGATATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * **
27280228 GTTATTTTACCTTATAAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
27280255 GTCATTTTACCCTATGGAGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
27280282 ATTATTTTACCCTAT-GGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
27280308 ATCATTTTATCCTATGAGAGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
27280335 GTCATTCTT-TCCTATAGGGGTATTTCA
1 GTCATT-TTACCCTATGGGGGTATTTCG
* *
27280362 ATCATTCTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
27280389 ATTATTCTACCATATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
27280416 ATCATTCTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
27280443 GTCATTCTACCCTAT-GGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
27280469 GTCATTCTACCTTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* **
27280496 GTTATTTTACTTTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * **
27280523 ATCATTTAATCCTATGGGGGTATTTAA
1 GTCATTTTACCCTATGGGGGTATTTCG
*
27280550 GTCATTTTACCCT-T-GGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
27280575 GTCATTTTACC
1 GTCATTTTACC
27280586 TATTTTGGGA
Statistics
Matches: 374, Mismatches: 59, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
25 20 0.05
26 73 0.20
27 279 0.75
28 2 0.01
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:27280195 original size:80 final size:79
Alignment explanation
Indices: 27280121--27280581 Score: 434
Period size: 80 Copynumber: 5.8 Consensus size: 79
27280111 GGGTATAACA
* *
27280121 GTCATTTTACCTTATGGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTTTGGTCATTTCACC
1 GTCATTTTACCCTATGGGGGTATTTC-GTCATTTTACCCTATGAGGGTATTTCGGTCATTTCACC
*
27280186 CTAT-GGGGTATTTTG
65 CTATGGGGGTA-TTTC
* * * * * *
27280201 GTCATTTTACCTTATGGGGATATTTCGGTTATTTTACCTTATAAGGGTATTTCGGTCATTTTACC
1 GTCATTTTACCCTATGGGGGTATTTC-GTCATTTTACCCTATGAGGGTATTTCGGTCATTTCACC
*
27280266 CTATGGAGGTATTTC
65 CTATGGGGGTATTTC
* * * *
27280281 GATTATTTTACCCTAT-GGGGTATTTCGATCATTTTATCCTATGAGAGTATTTCGGTCA-TTCTT
1 G-TCATTTTACCCTATGGGGGTATTTCG-TCATTTTACCCTATGAGGGTATTTCGGTCATTTC-A
* *
27280344 TCCTATAGGGGTATTTC
63 CCCTATGGGGGTATTTC
* * * * * * *
27280361 AATCATTCTACCCTATGGGGGTATTTCGATTATTCTACCATATGGGGGTATTTCGATCA-TTCTA
1 -GTCATTTTACCCTATGGGGGTATTTCG-TCATTTTACCCTATGAGGGTATTTCGGTCATTTC-A
27280425 CCCTATGGGGGTATTTC
63 CCCTATGGGGGTATTTC
* * * * *
27280442 GGTCATTCTACCCTAT-GGGGTATTTCGGTCATTCTACCTTAT-AGGGGTATTTCGGTTATTTTA
1 -GTCATTTTACCCTATGGGGGTATTTC-GTCATTTTACCCTATGA-GGGTATTTCGGTCATTTCA
**
27280505 CTTTATGGGGGTATTTC
63 CCCTATGGGGGTATTTC
* * * *
27280522 GATCATTTAATCCTATGGGGGTATTTAAGTCATTTTACCCT-TG-GGGTATTTTGGTCATTT
1 G-TCATTTTACCCTATGGGGGTATTT-CGTCATTTTACCCTATGAGGGTATTTCGGTCATTT
27280582 TACCTATTTT
Statistics
Matches: 315, Mismatches: 53, Indels: 27
0.80 0.13 0.07
Matches are distributed among these distances:
79 19 0.06
80 188 0.60
81 108 0.34
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.43
Consensus pattern (79 bp):
GTCATTTTACCCTATGGGGGTATTTCGTCATTTTACCCTATGAGGGTATTTCGGTCATTTCACCC
TATGGGGGTATTTC
Found at i:27280259 original size:107 final size:107
Alignment explanation
Indices: 27280121--27280585 Score: 489
Period size: 107 Copynumber: 4.3 Consensus size: 107
27280111 GGGTATAACA
* * * * *
27280121 GTCATTTTACCTTATGGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTTTGGTCATTTCACC
1 GTCATTTTACCCTAT-GGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGATTATTTCACC
* *
27280186 CTAT-GGGGTATTTTGGTCATTTTA-CCTTATGGGGATATTTCG
65 CTATGGGGGTATTTCGATCATTTTATCC-TATGGGGATATTTCG
* * * *
27280228 GTTATTTTACCTTATAAGGGTATTTCGGTCATTTTACCCTATG-GAGGTATTTCGATTATTTTAC
1 GTCATTTTACCCTAT-GGGGTATTTCGGTCATTTTACCCTATGAG-GGTATTTCGATTATTTCAC
*
27280292 CCTAT-GGGGTATTTCGATCATTTTATCCTAT-GAGAGTATTTCG
64 CCTATGGGGGTATTTCGATCATTTTATCCTATGGGGA-TATTTCG
* ** * *
27280335 GTCATTCTT-TCCTATAGGGGTATTTCAATCATTCTACCCTATGGGGGTATTTCGATTA-TTCTA
1 GTCATT-TTACCCTAT-GGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGATTATTTC-A
* * * *
27280398 CCATATGGGGGTATTTCGATCATTCTACCCTATGGGGGTATTTCG
63 CCCTATGGGGGTATTTCGATCATTTTATCCTATGGGGATATTTCG
* * * * * *
27280443 GTCATTCTACCCTATGGGGTATTTCGGTCATTCTACCTTAT-AGGGGTATTTCGGTTATTTTACT
1 GTCATTTTACCCTATGGGGTATTTCGGTCATTTTACCCTATGA-GGGTATTTCGATTATTTCACC
* * * **
27280507 TTATGGGGGTATTTCGATCATTTAATCCTATGGGGGTATTTAA
65 CTATGGGGGTATTTCGATCATTTTATCCTATGGGGATATTTCG
*
27280550 GTCATTTTACCCT-TGGGGTATTTTGGTCATTTTACC
1 GTCATTTTACCCTATGGGGTATTTCGGTCATTTTACC
27280586 TATTTTGGGA
Statistics
Matches: 305, Mismatches: 42, Indels: 23
0.82 0.11 0.06
Matches are distributed among these distances:
106 27 0.09
107 227 0.74
108 49 0.16
109 2 0.01
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.43
Consensus pattern (107 bp):
GTCATTTTACCCTATGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGATTATTTCACCC
TATGGGGGTATTTCGATCATTTTATCCTATGGGGATATTTCG
Found at i:27285557 original size:6 final size:6
Alignment explanation
Indices: 27285546--27285575 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
27285536 GTGTGTCAAA
27285546 TACTGT TACTGT TACTGAT TACTGT TACTG
1 TACTGT TACTGT TACTG-T TACTGT TACTG
27285576 GTGTGTTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.47
Consensus pattern (6 bp):
TACTGT
Found at i:27285569 original size:13 final size:12
Alignment explanation
Indices: 27285546--27285575 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
27285536 GTGTGTCAAA
27285546 TACTGTTACTGT
1 TACTGTTACTGT
27285558 TACTGATTACTGT
1 TACTG-TTACTGT
27285571 TACTG
1 TACTG
27285576 GTGTGTTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.47
Consensus pattern (12 bp):
TACTGTTACTGT
Found at i:27288933 original size:21 final size:22
Alignment explanation
Indices: 27288908--27288950 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
27288898 CCATACATTT
27288908 CACAATTTCA-CACATTT-TCAA
1 CACAATTT-ATCACATTTCTCAA
27288929 CACAATTTATCACATTTCTCAA
1 CACAATTTATCACATTTCTCAA
27288951 TTTAACCCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 1 0.05
21 15 0.75
22 4 0.20
ACGTcount: A:0.37, C:0.28, G:0.00, T:0.35
Consensus pattern (22 bp):
CACAATTTATCACATTTCTCAA
Found at i:27292065 original size:15 final size:15
Alignment explanation
Indices: 27292041--27292072 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
27292031 TATGCATGCA
*
27292041 AAATATAAAAGACAT
1 AAATACAAAAGACAT
27292056 AAATACAAAAGACAT
1 AAATACAAAAGACAT
27292071 AA
1 AA
27292073 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:27298056 original size:23 final size:23
Alignment explanation
Indices: 27298020--27298070 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
27298010 AAAAATGGTT
27298020 AAAT-TACCATATAAATCCATTC
1 AAATATACCATATAAATCCATTC
*
27298042 AAATATACTATATAAATCCATTC
1 AAATATACCATATAAATCCATTC
27298065 AAATAT
1 AAATAT
27298071 GCTTTCATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 4 0.15
23 23 0.85
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (23 bp):
AAATATACCATATAAATCCATTC
Found at i:27302954 original size:20 final size:20
Alignment explanation
Indices: 27302929--27302968 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
27302919 CGTAAAATGA
* *
27302929 TTTCTGGAAACTGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
27302949 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
27302969 GGAAAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:27312308 original size:36 final size:36
Alignment explanation
Indices: 27312268--27312340 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
27312258 CTTATAAAGA
*
27312268 GAAAGTTCTATAATTTAGTTACTTAGAATTACTGTT
1 GAAAGTTCTATAATTTAGTTACCTAGAATTACTGTT
* *
27312304 GAAAGTTTTATATTTTAGTTACCTAGAATTACTGTT
1 GAAAGTTCTATAATTTAGTTACCTAGAATTACTGTT
27312340 G
1 G
27312341 TACTTATCCT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.15, T:0.45
Consensus pattern (36 bp):
GAAAGTTCTATAATTTAGTTACCTAGAATTACTGTT
Found at i:27326953 original size:23 final size:23
Alignment explanation
Indices: 27326918--27326968 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
27326908 TACTTAAATT
27326918 TATTTTAATATATCTATATATTAA
1 TATTTTAATATATCTATAT-TTAA
*
27326942 -ATTTGTAA-ATATCTCTATTTAA
1 TATTT-TAATATATCTATATTTAA
27326964 TATTT
1 TATTT
27326969 ATAGACTCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
22 4 0.17
23 17 0.71
24 3 0.12
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55
Consensus pattern (23 bp):
TATTTTAATATATCTATATTTAA
Found at i:27331781 original size:51 final size:50
Alignment explanation
Indices: 27331658--27331903 Score: 214
Period size: 51 Copynumber: 4.9 Consensus size: 50
27331648 TATTATCATT
* * * *
27331658 CGATACACGTAGTAGCCTT-CACATGGTTCTACACACGTGATCA-AACTTTC
1 CGATACACGTAGTAG-CTTGCACATAGTACTACACACGTGACCATAA-TATC
* * * *
27331708 TGGTTCACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTAATATC
1 CGATACACGTAGTAGCTTGCACATAGTACTACACACGTGACCA-TAATATC
* * *
27331759 TGATACACGTAGTAGCTTGCACATAGTACTACACACGTGATCGA-AGCTATCC
1 CGATACACGTAGTAGCTTGCACATAGTACTACACACGTGA-CCATA-ATAT-C
* * * * * *
27331811 CG-TACGCATAGTAGCTTGCACATAGTACTACACATGCGACCTTTCAT-TC
1 CGATACACGTAGTAGCTTGCACATAGTACTACACACGTGACC-ATAATATC
* * *
27331860 CGGTACACGTAGTAGCCTACACATAGTACTACACACGTGACCAT
1 CGATACACGTAGTAGCTTGCACATAGTACTACACACGTGACCAT
27331904 CACTTTGACT
Statistics
Matches: 158, Mismatches: 29, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
49 6 0.04
50 69 0.44
51 77 0.49
52 6 0.04
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (50 bp):
CGATACACGTAGTAGCTTGCACATAGTACTACACACGTGACCATAATATC
Found at i:27331799 original size:101 final size:100
Alignment explanation
Indices: 27331658--27331899 Score: 288
Period size: 101 Copynumber: 2.4 Consensus size: 100
27331648 TATTATCATT
* * * ** * *
27331658 CGATACACGTAGTAGCCTTCACATGGTTCTACACACGTGATC-AAACTTTCTGGTTCACGTAGTA
1 CGATACACGTAGTAG-CTTCACATAGTACTACACACGTGATCGAAACTATCCCGTACACATAGTA
*
27331722 GCCTGCACATAGTACTACACACGTGACCATTAATATC
65 GCCTGCACATAGTACTACACACGCGACCATTAAT-TC
* * *
27331759 TGATACACGTAGTAGCTTGCACATAGTACTACACACGTGATCGAAGCTATCCCGTACGCATAGTA
1 CGATACACGTAGTAGCTT-CACATAGTACTACACACGTGATCGAAACTATCCCGTACACATAGTA
* * * *
27331824 GCTTGCACATAGTACTACACATGCGACCTTTCATTC
65 GCCTGCACATAGTACTACACACGCGACCATTAATTC
* *
27331860 CGGTACACGTAGTAGCCTACACATAGTACTACACACGTGA
1 CGATACACGTAGTAG-CTTCACATAGTACTACACACGTGA
27331900 CCATCACTTT
Statistics
Matches: 120, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
100 3 0.03
101 71 0.59
102 46 0.38
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (100 bp):
CGATACACGTAGTAGCTTCACATAGTACTACACACGTGATCGAAACTATCCCGTACACATAGTAG
CCTGCACATAGTACTACACACGCGACCATTAATTC
Found at i:27331922 original size:101 final size:97
Alignment explanation
Indices: 27331653--27331923 Score: 256
Period size: 101 Copynumber: 2.7 Consensus size: 97
27331643 TTAACTATTA
* * * * *
27331653 TCATT-CGATACACGTAGTAGCCTTCACATGGTTCTACACACGTGATCAAACTTTCTGGTTCACG
1 TCATTCCGATACACGTAGTAGCCTACACATAGTACTACACACGTGA-CCAACTTTCT--TTCACA
*
27331717 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
63 TAGTAGCCTGCACATAGTACTACACACGCGACCAT
* * * * * * * * *
27331752 TAATATCTGATACACGTAGTAGCTTGCACATAGTACTACACACGTGATCGAAGCTATCCCGTACG
1 TCAT-TCCGATACACGTAGTAGCCTACACATAGTACTACACACGTGA-CCAA-CT-T-TCTTTCA
* * *
27331817 CATAGTAGCTTGCACATAGTACTACACATGCGACCTT
61 CATAGTAGCCTGCACATAGTACTACACACGCGACCAT
*
27331854 TCATTCCGGTACACGTAGTAGCCTACACATAGTACTACACACGTGACCATCACTTTGACTTTCAC
1 TCATTCCGATACACGTAGTAGCCTACACATAGTACTACACACGTGACCA--ACTTT--CTTTCAC
27331919 ATAGT
62 ATAGT
27331924 GACCTACACA
Statistics
Matches: 137, Mismatches: 26, Indels: 16
0.77 0.15 0.09
Matches are distributed among these distances:
99 3 0.02
100 4 0.03
101 88 0.64
102 40 0.29
103 1 0.01
104 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (97 bp):
TCATTCCGATACACGTAGTAGCCTACACATAGTACTACACACGTGACCAACTTTCTTTCACATAG
TAGCCTGCACATAGTACTACACACGCGACCAT
Found at i:27336369 original size:2 final size:2
Alignment explanation
Indices: 27336362--27336388 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
27336352 CCTCTCATCC
27336362 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
27336389 GGAATGTGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:27337607 original size:26 final size:27
Alignment explanation
Indices: 27337578--27337642 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
27337568 TTTAAATTAT
*
27337578 TAATTATTTTAAATTAA-TTAAAACTC
1 TAATTATCTTAAATTAATTTAAAACTC
* * * *
27337604 TAATCATCCTAACTTAATTTAAAATTC
1 TAATTATCTTAAATTAATTTAAAACTC
27337631 TAATTATCTTAA
1 TAATTATCTTAA
27337643 CTAAAATCTA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 13 0.42
27 18 0.58
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (27 bp):
TAATTATCTTAAATTAATTTAAAACTC
Found at i:27337674 original size:53 final size:53
Alignment explanation
Indices: 27337526--27337897 Score: 151
Period size: 53 Copynumber: 7.2 Consensus size: 53
27337516 CTAAACTCCG
* * *
27337526 AATTATCTTAACTAAAATCTAAATTATTACCTAATCTATTGATTTAAATTATT
1 AATTATCTTAACTAAAATCTAAATTATTATCTAATCTATTAATTTAAATTACT
* * * *
27337579 AATTATTTTAAAT-TAAT-TAAAACTCTAATCATCCTAA-C--TTAATTTAAAATT-CT
1 AATTATCTTAACTAAAATCT-AAA-T-T-ATTAT-CTAATCTATTAATTT-AAATTACT
*
27337632 AATTATCTTAACTAAAATCTAAATTATTATCTAATCTATTAA-TTAAATTCCT
1 AATTATCTTAACTAAAATCTAAATTATTATCTAATCTATTAATTTAAATTACT
* * * * * * *
27337684 AATTTTATTATCT-AAAT-TAAAACTCTAATTATCCCAA--T-TCAATTTAAACTCCT
1 AATTATCTTAACTAAAATCT-AAA-T-T-ATTAT-CTAATCTATTAATTTAAATTACT
* * * *
27337737 AATTATC-T-A-T---ATCTAAATTATTACCTAATATTTTAATTTAAATTATT
1 AATTATCTTAACTAAAATCTAAATTATTATCTAATCTATTAATTTAAATTACT
* * * ** * ***
27337784 AATCATC-TAAATAAATTAGAAATCTAATTATTCTAA--T-TTCATTTAAACCCCT
1 AATTATCTTAACTAAAATCTAAAT-T-ATTA-TCTAATCTATTAATTTAAATTACT
* * * * *
27337836 AATTACCTTAACTAAAATCTAAATTATTATCCAACCTGTTAA-TTAAATTCCT
1 AATTATCTTAACTAAAATCTAAATTATTATCTAATCTATTAATTTAAATTACT
*
27337888 AACTATCTTA
1 AATTATCTTA
27337898 TTTAAATTAA
Statistics
Matches: 237, Mismatches: 48, Indels: 69
0.67 0.14 0.19
Matches are distributed among these distances:
44 3 0.01
45 4 0.02
46 2 0.01
47 19 0.08
48 6 0.03
49 2 0.01
50 10 0.04
51 22 0.09
52 64 0.27
53 68 0.29
54 21 0.09
55 12 0.05
56 4 0.02
ACGTcount: A:0.41, C:0.15, G:0.01, T:0.43
Consensus pattern (53 bp):
AATTATCTTAACTAAAATCTAAATTATTATCTAATCTATTAATTTAAATTACT
Found at i:27337739 original size:105 final size:105
Alignment explanation
Indices: 27337517--27337955 Score: 413
Period size: 105 Copynumber: 4.2 Consensus size: 105
27337507 CGAGGAACCC
* * *
27337517 TAAACTCCGAATTATCTTAACTAAAATCTAAATTATTACCTAATCTATTGATTTAAATTATTAAT
1 TAAACTCCTAATTATCTTAACTAAAATCTAAATTATTACCTAATCTATT-AATTAAATTACTAAT
* *
27337582 TATT-TTAAATTAATTAAAACTCTAATCATCCTAACTT-AATT
65 T-TTATTAAATAAATTAAAA-TCTAATTATCCTAACTTCAATT
* * * *
27337623 TAAAATTCTAATTATCTTAACTAAAATCTAAATTATTATCTAATCTATTAATTAAATTCCTAATT
1 TAAACTCCTAATTATCTTAACTAAAATCTAAATTATTACCTAATCTATTAATTAAATTACTAATT
** *
27337688 TTATTATCTAAATTAAAACTCTAATTATCCCAA-TTCAATT
66 TTATTAAATAAATTAAAA-TCTAATTATCCTAACTTCAATT
* * *
27337728 TAAACTCCTAATTATC-T-A-T---ATCTAAATTATTACCTAATATTTTAATTTAAATTATTAA-
1 TAAACTCCTAATTATCTTAACTAAAATCTAAATTATTACCTAATCTATTAA-TTAAATTACTAAT
* * *
27337786 -TCATCTAAATAAATTAGAAATCTAATTATTCTAATTTC-ATT
65 TTTAT-TAAATAAATTA-AAATCTAATTATCCTAACTTCAATT
* * * * * *
27337827 TAAACCCCTAATTACCTTAACTAAAATCTAAATTATTATCC-AACCTGTTAATTAAATTCCTAAC
1 TAAACTCCTAATTATCTTAACTAAAATCTAAATTATTA-CCTAATCTATTAATTAAATTACTAAT
* * ** * * *
27337891 TATCTTATTTAAATTAAAATTTCAATTATCCTAA-TTTAGTT
65 TTTATTAAATAAATTAAAATCT-AATTATCCTAACTTCAATT
27337932 TAAACT-CTAATTATCTTAACTAAA
1 TAAACTCCTAATTATCTTAACTAAA
27337956 TTAAATCTCT
Statistics
Matches: 274, Mismatches: 42, Indels: 36
0.78 0.12 0.10
Matches are distributed among these distances:
98 3 0.01
99 61 0.22
100 17 0.06
101 1 0.00
102 2 0.01
103 1 0.00
104 39 0.14
105 102 0.37
106 48 0.18
ACGTcount: A:0.41, C:0.15, G:0.01, T:0.43
Consensus pattern (105 bp):
TAAACTCCTAATTATCTTAACTAAAATCTAAATTATTACCTAATCTATTAATTAAATTACTAATT
TTATTAAATAAATTAAAATCTAATTATCCTAACTTCAATT
Found at i:27337880 original size:204 final size:203
Alignment explanation
Indices: 27337542--27337958 Score: 543
Period size: 204 Copynumber: 2.0 Consensus size: 203
27337532 CTTAACTAAA
* * * * *
27337542 ATCTAAATTATTACCTAATCTATTGATTTAAATTATTAATTATTTTAAATTAATTAAAACTCTAA
1 ATCTAAATTATTACCTAATATATTAATTTAAATTATTAATCATTCTAAATAAATTAAAACTCTAA
** * * *
27337607 TCATCCTAACTTAATTTAAAATTCTAATTATCTTAACTAAAATCTAAATTATTATCTAATCTATT
66 TCATCCTAACTTAATTTAAAACCCTAATTACCTTAACTAAAATCTAAATTATTATCCAACCTATT
* *
27337672 AATTAAATTCCTAATTTTATTATCTAAATTAAAA-CTCTAATTATCCCAATTCAATTTAAACTCC
131 AATTAAATTCCTAACTATATTATCTAAATTAAAATCTC-AATTATCCCAATTCAATTTAAACT-C
27337736 TAATTATCTAT
194 TAATTATCT-T
*
27337747 ATCTAAATTATTACCTAATATTTTAATTTAAATTATTAATCA-TCTAAATAAATTAGAAA-TCTA
1 ATCTAAATTATTACCTAATATATTAATTTAAATTATTAATCATTCTAAATAAATTA-AAACTCTA
* * * * * *
27337810 ATTATTCTAATTTCATTTAAACCCCTAATTACCTTAACTAAAATCTAAATTATTATCCAACCTGT
65 ATCATCCTAACTTAATTTAAAACCCTAATTACCTTAACTAAAATCTAAATTATTATCCAACCTAT
* * * * * *
27337875 TAATTAAATTCCTAACTATCTTATTTAAATTAAAATTTCAATTATCCTAATTTAGTTTAAACTCT
130 TAATTAAATTCCTAACTATATTATCTAAATTAAAATCTCAATTATCCCAATTCAATTTAAACTCT
27337940 AATTATCTT
195 AATTATCTT
*
27337949 AACTAAATTA
1 ATCTAAATTA
27337959 AATCTCTAAT
Statistics
Matches: 184, Mismatches: 26, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
202 10 0.05
203 10 0.05
204 121 0.66
205 43 0.23
ACGTcount: A:0.41, C:0.14, G:0.01, T:0.44
Consensus pattern (203 bp):
ATCTAAATTATTACCTAATATATTAATTTAAATTATTAATCATTCTAAATAAATTAAAACTCTAA
TCATCCTAACTTAATTTAAAACCCTAATTACCTTAACTAAAATCTAAATTATTATCCAACCTATT
AATTAAATTCCTAACTATATTATCTAAATTAAAATCTCAATTATCCCAATTCAATTTAAACTCTA
ATTATCTT
Found at i:27337920 original size:26 final size:25
Alignment explanation
Indices: 27337876--27337960 Score: 62
Period size: 26 Copynumber: 3.3 Consensus size: 25
27337866 CCAACCTGTT
* *
27337876 AATTAAATTCCTAACTATCTTATTTA
1 AATTAAAAT-CTAATTATCTTATTTA
* *
27337902 AATTAAAATTTCAATTATCCTAATTTA
1 AATTAAAATCT-AATTAT-CTTATTTA
** * **
27337929 GTTTAAACTCTAATTATCTTAACTA
1 AATTAAAATCTAATTATCTTATTTA
27337954 AATTAAA
1 AATTAAA
27337961 TCTCTAATCA
Statistics
Matches: 44, Mismatches: 13, Indels: 5
0.71 0.21 0.08
Matches are distributed among these distances:
25 11 0.25
26 19 0.43
27 14 0.32
ACGTcount: A:0.42, C:0.13, G:0.01, T:0.44
Consensus pattern (25 bp):
AATTAAAATCTAATTATCTTATTTA
Found at i:27339673 original size:29 final size:29
Alignment explanation
Indices: 27339628--27339718 Score: 92
Period size: 29 Copynumber: 3.1 Consensus size: 29
27339618 ACAAAGTGAA
* * * * *
27339628 CACCGATACAAAATACCTGATAATATGGT
1 CACCGATACATAGTACCTAATAAAATAGT
*
27339657 CATCGATACATAGTACCTAATAAAATAGT
1 CACCGATACATAGTACCTAATAAAATAGT
* * *
27339686 CACCGGTACATAGCACCTAATAAATATAAT
1 CACCGATACATAGTACCTAATAAA-ATAGT
27339716 CAC
1 CAC
27339719 TAGCACATAG
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 44 0.86
30 7 0.14
ACGTcount: A:0.43, C:0.22, G:0.11, T:0.24
Consensus pattern (29 bp):
CACCGATACATAGTACCTAATAAAATAGT
Found at i:27344353 original size:25 final size:25
Alignment explanation
Indices: 27344316--27344398 Score: 141
Period size: 25 Copynumber: 3.3 Consensus size: 25
27344306 TATGCTCAAT
27344316 GAGCTAT-GAATCGGTATGCTCTCAC
1 GAGCTATAG-ATCGGTATGCTCTCAC
*
27344341 GAGCTATAGATCGGTATGCTCTCAT
1 GAGCTATAGATCGGTATGCTCTCAC
27344366 GAGCTATAGATCGGTATGCTCTCAC
1 GAGCTATAGATCGGTATGCTCTCAC
27344391 GAGCTATA
1 GAGCTATA
27344399 AATCACTAAC
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
25 54 0.98
26 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (25 bp):
GAGCTATAGATCGGTATGCTCTCAC
Found at i:27351978 original size:25 final size:25
Alignment explanation
Indices: 27351936--27351998 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
27351926 ATGCTCATAC
* * * *
27351936 GAGCTATGAATTGGTATGCTCTCAT
1 GAGCTATAAATCGATATGCTCTCAG
* *
27351961 GAGCTATAAATCGATATGCTTTTAG
1 GAGCTATAAATCGATATGCTCTCAG
27351986 GAGCTATAAATCG
1 GAGCTATAAATCG
27351999 GTAACCCTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.33
Consensus pattern (25 bp):
GAGCTATAAATCGATATGCTCTCAG
Found at i:27353348 original size:20 final size:21
Alignment explanation
Indices: 27353309--27353349 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
27353299 AATAGTTTGC
27353309 ATAAGAACATAGCTCACATAA
1 ATAAGAACATAGCTCACATAA
* *
27353330 ATAA-AACATAGTTCGCATAA
1 ATAAGAACATAGCTCACATAA
27353350 TCATAGTGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.51, C:0.17, G:0.10, T:0.22
Consensus pattern (21 bp):
ATAAGAACATAGCTCACATAA
Found at i:27369217 original size:38 final size:38
Alignment explanation
Indices: 27369156--27369348 Score: 244
Period size: 38 Copynumber: 5.1 Consensus size: 38
27369146 GTAAATTTTC
* * *
27369156 AATA-CACCGGCACAAAGCCTGCTAGGCACATAGCCCA
1 AATATCACCGGCACAAAGCCTGCTAGGCACACAGCTCG
* * *
27369193 AATATCACCGGCACACAGCTTGCTAGACACACAGCTCG
1 AATATCACCGGCACAAAGCCTGCTAGGCACACAGCTCG
*
27369231 AATATCACCGGCACAAAGCCTACTAGGCACACAGCTCG
1 AATATCACCGGCACAAAGCCTGCTAGGCACACAGCTCG
* *
27369269 AATATCACTGGCACAAAGCCTGCTAGGCACACAGTTCG
1 AATATCACCGGCACAAAGCCTGCTAGGCACACAGCTCG
*** * * *
27369307 AATATCAATAGCACAAAGCCTACTAGGCACATAGCCCG
1 AATATCACCGGCACAAAGCCTGCTAGGCACACAGCTCG
27369345 AATA
1 AATA
27369349 ACATTACATT
Statistics
Matches: 136, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
37 4 0.03
38 132 0.97
ACGTcount: A:0.35, C:0.32, G:0.18, T:0.15
Consensus pattern (38 bp):
AATATCACCGGCACAAAGCCTGCTAGGCACACAGCTCG
Found at i:27369293 original size:76 final size:76
Alignment explanation
Indices: 27369156--27369348 Score: 271
Period size: 76 Copynumber: 2.6 Consensus size: 76
27369146 GTAAATTTTC
* * * *
27369156 AATA-CACCGGCACAAAGCCTGCTAGGCACATAGCCCAAATATCACCGGCACACAGCTTGCTAGA
1 AATATCACCGGCACAAAGCCTACTAGGCACATAGCCCGAATATCACCGGCACAAAGCCTGCTAGA
27369220 CACACAGCTCG
66 CACACAGCTCG
* * * *
27369231 AATATCACCGGCACAAAGCCTACTAGGCACACAGCTCGAATATCACTGGCACAAAGCCTGCTAGG
1 AATATCACCGGCACAAAGCCTACTAGGCACATAGCCCGAATATCACCGGCACAAAGCCTGCTAGA
*
27369296 CACACAGTTCG
66 CACACAGCTCG
***
27369307 AATATCAATAGCACAAAGCCTACTAGGCACATAGCCCGAATA
1 AATATCACCGGCACAAAGCCTACTAGGCACATAGCCCGAATA
27369349 ACATTACATT
Statistics
Matches: 103, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
75 4 0.04
76 99 0.96
ACGTcount: A:0.35, C:0.32, G:0.18, T:0.15
Consensus pattern (76 bp):
AATATCACCGGCACAAAGCCTACTAGGCACATAGCCCGAATATCACCGGCACAAAGCCTGCTAGA
CACACAGCTCG
Found at i:27374535 original size:16 final size:18
Alignment explanation
Indices: 27374500--27374537 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
27374490 ATCCTTACTT
*
27374500 AAATAAAATACAGTAGTA
1 AAATAAAATACAGAAGTA
27374518 AAATAAAATA-A-AAGTA
1 AAATAAAATACAGAAGTA
27374534 AAAT
1 AAAT
27374538 CCCTATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 1 0.05
18 10 0.53
ACGTcount: A:0.68, C:0.03, G:0.08, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAGAAGTA
Found at i:27384622 original size:31 final size:32
Alignment explanation
Indices: 27384575--27384647 Score: 105
Period size: 31 Copynumber: 2.3 Consensus size: 32
27384565 ACAAAATTTC
*
27384575 ACATGAA-TTTTGGTTTAATTTGTAATATTAT
1 ACATGAACTTTTGGTTTAATTTGCAATATTAT
*
27384606 ACATGAGCTTTT-GTTTAATTTGCAATATTAT
1 ACATGAACTTTTGGTTTAATTTGCAATATTAT
*
27384637 GCATGAACTTT
1 ACATGAACTTT
27384648 GACTTTTGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
31 33 0.89
32 4 0.11
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.48
Consensus pattern (32 bp):
ACATGAACTTTTGGTTTAATTTGCAATATTAT
Found at i:27385479 original size:21 final size:20
Alignment explanation
Indices: 27385445--27385485 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
27385435 TTAGTTTGAT
27385445 TTTTTTATATAATTT-ATAA
1 TTTTTTATATAATTTGATAA
27385464 TTTTTTATATTGAATTTGATAA
1 TTTTTTATA-T-AATTTGATAA
27385486 ATTAATAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.47
20 1 0.05
21 5 0.26
22 4 0.21
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
TTTTTTATATAATTTGATAA
Found at i:27396314 original size:20 final size:20
Alignment explanation
Indices: 27396285--27396334 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
27396275 CATATATCCT
* *
27396285 AATTTTATTTTATTCCAATC
1 AATTTGATTTGATTCCAATC
**
27396305 AATTTGATTTGATTTTAATC
1 AATTTGATTTGATTCCAATC
*
27396325 AAATTGATTT
1 AATTTGATTT
27396335 AATTGCTCCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.32, C:0.08, G:0.06, T:0.54
Consensus pattern (20 bp):
AATTTGATTTGATTCCAATC
Found at i:27397097 original size:25 final size:26
Alignment explanation
Indices: 27397059--27397108 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
27397049 TATTTTAGTT
27397059 AAATTATAAATATTTTA-ACATTAAAA
1 AAATTATAAATATTTTATA-ATTAAAA
*
27397085 AAATT-TATATATTTTATAATTAAA
1 AAATTATAAATATTTTATAATTAAA
27397109 TATATTTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (26 bp):
AAATTATAAATATTTTATAATTAAAA
Found at i:27397156 original size:23 final size:24
Alignment explanation
Indices: 27397102--27397157 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
27397092 TATATTTTAT
* *
27397102 AATTAAATATATTTTCTTTTAACA
1 AATTAAATATATTTTATATTAACA
27397126 AATTAAATATATTTTATAATT-AC-
1 AATTAAATATATTTTAT-ATTAACA
27397149 AATTAAATA
1 AATTAAATA
27397158 ATATAGTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 9 0.31
24 18 0.62
25 2 0.07
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.46
Consensus pattern (24 bp):
AATTAAATATATTTTATATTAACA
Found at i:27398323 original size:31 final size:31
Alignment explanation
Indices: 27398271--27398337 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
27398261 ATTTATTTTA
27398271 TATATATTGCTAAATTAATTTGTTTTAATAT
1 TATATATTGCTAAATTAATTTGTTTTAATAT
* * *
27398302 TATA-ATTGTTAATATTCATTTGTTTTAATTT
1 TATATATTGCTAA-ATTAATTTGTTTTAATAT
27398333 TATAT
1 TATAT
27398338 TTATTTTTCT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 7 0.23
31 24 0.77
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.58
Consensus pattern (31 bp):
TATATATTGCTAAATTAATTTGTTTTAATAT
Found at i:27402556 original size:21 final size:23
Alignment explanation
Indices: 27402520--27402561 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
27402510 AAATTGAGAG
27402520 AAAAGAACATTGAAAAAGAAATT
1 AAAAGAACATTGAAAAAGAAATT
27402543 AAAAGAA-A-TGAAAAAGAAA
1 AAAAGAACATTGAAAAAGAAA
27402562 AAGATGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.58
22 1 0.05
23 7 0.37
ACGTcount: A:0.71, C:0.02, G:0.14, T:0.12
Consensus pattern (23 bp):
AAAAGAACATTGAAAAAGAAATT
Found at i:27402557 original size:11 final size:11
Alignment explanation
Indices: 27402520--27402561 Score: 50
Period size: 10 Copynumber: 3.7 Consensus size: 11
27402510 AAATTGAGAG
27402520 AAAAGAACATTGA
1 AAAAGAA-A-TGA
*
27402533 AAAAGAAAT-T
1 AAAAGAAATGA
27402543 AAAAGAAATGA
1 AAAAGAAATGA
27402554 AAAAGAAA
1 AAAAGAAA
27402562 AAGATGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
10 9 0.35
11 9 0.35
12 1 0.04
13 7 0.27
ACGTcount: A:0.71, C:0.02, G:0.14, T:0.12
Consensus pattern (11 bp):
AAAAGAAATGA
Found at i:27405271 original size:11 final size:11
Alignment explanation
Indices: 27405255--27405303 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
27405245 AAGTCATTGT
27405255 AAAAAAAAT--
1 AAAAAAAATCA
*
27405264 AAAAAAAATCG
1 AAAAAAAATCA
*
27405275 AAAAAAATTC-
1 AAAAAAAATCA
*
27405285 AAAAAAAATTA
1 AAAAAAAATCA
27405296 AAAAAAAA
1 AAAAAAAA
27405304 GTTTATTTCG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 9 0.26
10 8 0.24
11 17 0.50
ACGTcount: A:0.82, C:0.04, G:0.02, T:0.12
Consensus pattern (11 bp):
AAAAAAAATCA
Found at i:27406523 original size:12 final size:12
Alignment explanation
Indices: 27406506--27406581 Score: 50
Period size: 12 Copynumber: 6.3 Consensus size: 12
27406496 AGTGAAAAGC
27406506 AAAAAGAGATTG
1 AAAAAGAGATTG
*
27406518 AAAAAGAAATTG
1 AAAAAGAGATTG
*
27406530 --AAAGAGA-AG
1 AAAAAGAGATTG
*
27406539 AAAAAGAAAGAGTGG
1 AAAAAG--AGA-TTG
*
27406554 AAAAAGAAATTG
1 AAAAAGAGATTG
* *
27406566 AAAGAGAGCTTG
1 AAAAAGAGATTG
27406578 AAAA
1 AAAA
27406582 GAAATCGAGT
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 1 0.02
10 6 0.12
11 4 0.08
12 25 0.52
13 5 0.10
15 7 0.15
ACGTcount: A:0.62, C:0.01, G:0.25, T:0.12
Consensus pattern (12 bp):
AAAAAGAGATTG
Found at i:27406547 original size:15 final size:15
Alignment explanation
Indices: 27406529--27406562 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
27406519 AAAAGAAATT
27406529 GAAAGAGAAGAAAAA
1 GAAAGAGAAGAAAAA
**
27406544 GAAAGAGTGGAAAAA
1 GAAAGAGAAGAAAAA
27406559 GAAA
1 GAAA
27406563 TTGAAAGAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.03
Consensus pattern (15 bp):
GAAAGAGAAGAAAAA
Found at i:27409855 original size:43 final size:44
Alignment explanation
Indices: 27409752--27410009 Score: 190
Period size: 43 Copynumber: 5.9 Consensus size: 44
27409742 CAAATCCATT
* * **
27409752 TAGAACATAACCTTTAGCGAC-GTTT-CTCACAAAAAATGCTACTA
1 TAGAACATAACCTTTAGCGACACTTTCCTCAC--AAAACGCCGCTA
* * *
27409796 TATAACATGACATTTAGCGACACTTTCCTCAC-AAACGCCGCTA
1 TAGAACATAACCTTTAGCGACACTTTCCTCACAAAACGCCGCTA
* * *
27409839 TAGAACATAACCTTTAGCGAC-GTTT-CTCACAAAAAATGCCACTA
1 TAGAACATAACCTTTAGCGACACTTTCCTCAC--AAAACGCCGCTA
* * *
27409883 TATAACATGAA-ATTTAGCGGCACTTTCCTCAC-AAACGCCGCTA
1 TAGAACAT-AACCTTTAGCGACACTTTCCTCACAAAACGCCGCTA
* ** * * **
27409926 AAGAACATGGCCTTTAGCGGCACTTTCCCCACAAAAACATCGCTA
1 TAGAACATAACCTTTAGCGACACTTTCCTCAC-AAAACGCCGCTA
* * * *
27409971 TAAAACATGACCTTTAGCGACGCTTTCCCCAC-AAACGCC
1 TAGAACATAACCTTTAGCGACACTTTCCTCACAAAACGCC
27410010 ACTACTTTAG
Statistics
Matches: 169, Mismatches: 34, Indels: 23
0.75 0.15 0.10
Matches are distributed among these distances:
41 5 0.03
42 3 0.02
43 65 0.38
44 42 0.25
45 44 0.26
46 10 0.06
ACGTcount: A:0.34, C:0.29, G:0.13, T:0.24
Consensus pattern (44 bp):
TAGAACATAACCTTTAGCGACACTTTCCTCACAAAACGCCGCTA
Found at i:27409890 original size:44 final size:44
Alignment explanation
Indices: 27409755--27409890 Score: 170
Period size: 44 Copynumber: 3.1 Consensus size: 44
27409745 ATCCATTTAG
*
27409755 AACATAACCTTTAGCGACGTTTCTCACAAAAAATGCTACTATAT
1 AACATAACCTTTAGCGACGTTTCTCACAAAAAATGCCACTATAT
* * * * * *
27409799 AACATGACATTTAGCGACACTTTCCTCAC---AAACGCCGCTATAG
1 AACATAACCTTTAGCGAC-GTTT-CTCACAAAAAATGCCACTATAT
27409842 AACATAACCTTTAGCGACGTTTCTCACAAAAAATGCCACTATAT
1 AACATAACCTTTAGCGACGTTTCTCACAAAAAATGCCACTATAT
27409886 AACAT
1 AACAT
27409891 GAAATTTAGC
Statistics
Matches: 74, Mismatches: 13, Indels: 10
0.76 0.13 0.10
Matches are distributed among these distances:
41 5 0.07
42 3 0.04
43 26 0.35
44 32 0.43
45 3 0.04
46 5 0.07
ACGTcount: A:0.38, C:0.26, G:0.10, T:0.26
Consensus pattern (44 bp):
AACATAACCTTTAGCGACGTTTCTCACAAAAAATGCCACTATAT
Found at i:27409898 original size:87 final size:87
Alignment explanation
Indices: 27409752--27410009 Score: 351
Period size: 87 Copynumber: 3.0 Consensus size: 87
27409742 CAAATCCATT
*
27409752 TAGAACATAACCTTTAGCGACGTTTCTCACAAAAAATGCTACTATATAACATGACATTTAGCGAC
1 TAGAACATAACCTTTAGCGACGTTTCTCACAAAAAATGCCACTATATAACATGACATTTAGCGAC
27409817 ACTTTCCTCACAAACGCCGCTA
66 ACTTTCCTCACAAACGCCGCTA
* *
27409839 TAGAACATAACCTTTAGCGACGTTTCTCACAAAAAATGCCACTATATAACATGAAATTTAGCGGC
1 TAGAACATAACCTTTAGCGACGTTTCTCACAAAAAATGCCACTATATAACATGACATTTAGCGAC
27409904 ACTTTCCTCACAAACGCCGCTA
66 ACTTTCCTCACAAACGCCGCTA
* ** * * * *
27409926 AAGAACATGGCCTTTAGCGGCAC-TTTCCCCACAAAAACAT--CGCTATAAAACATGACCTTTAG
1 TAGAACATAACCTTTAGC-G-ACGTTT-CTCACAAAAA-ATGCCACTATATAACATGACATTTAG
* *
27409988 CGACGCTTTCCCCACAAACGCC
62 CGACACTTTCCTCACAAACGCC
27410010 ACTACTTTAG
Statistics
Matches: 153, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
87 99 0.65
88 41 0.27
89 11 0.07
90 2 0.01
ACGTcount: A:0.34, C:0.29, G:0.13, T:0.24
Consensus pattern (87 bp):
TAGAACATAACCTTTAGCGACGTTTCTCACAAAAAATGCCACTATATAACATGACATTTAGCGAC
ACTTTCCTCACAAACGCCGCTA
Found at i:27410415 original size:66 final size:65
Alignment explanation
Indices: 27410293--27410420 Score: 150
Period size: 66 Copynumber: 1.9 Consensus size: 65
27410283 AAGCTGCAGC
* **
27410293 TGGAGTTCGTCATATTTTCTGCTTGCCTCTGCTTCCCTCGTTGCTGGCTCCACTTTAAGTTGTAG
1 TGGAGTTCGTCATATTTTCT-CTTGCCTCTGCTTCCCTCGATGCTACCTCCACTTTAAGTTGTAG
27410358 T
65 T
* * * **
27410359 TGGAGTTCTTCATATTTTCT-TTGAGCCTCTGCTTCTCTTGATGCTACCTCTGCTTTAAGTTG
1 TGGAGTTCGTCATATTTTCTCTT--GCCTCTGCTTCCCTCGATGCTACCTCCACTTTAAGTTG
27410421 ATCAATTTGC
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
64 2 0.04
66 50 0.96
ACGTcount: A:0.12, C:0.24, G:0.20, T:0.45
Consensus pattern (65 bp):
TGGAGTTCGTCATATTTTCTCTTGCCTCTGCTTCCCTCGATGCTACCTCCACTTTAAGTTGTAGT
Found at i:27414887 original size:19 final size:19
Alignment explanation
Indices: 27414863--27414907 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
27414853 GACTCGACTA
*
27414863 TCTTTGATGACATGAAAAG
1 TCTTTGACGACATGAAAAG
*
27414882 TCTTTGACGACATTAAAAG
1 TCTTTGACGACATGAAAAG
*
27414901 CCTTTGA
1 TCTTTGA
27414908 AGCCTTGGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (19 bp):
TCTTTGACGACATGAAAAG
Found at i:27416053 original size:9 final size:9
Alignment explanation
Indices: 27416041--27416081 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
27416031 TGATATATAT
27416041 TTATGTAAG
1 TTATGTAAG
27416050 TTATGTAAG
1 TTATGTAAG
* *
27416059 TTAGGAAAG
1 TTATGTAAG
27416068 TTATGTAAG
1 TTATGTAAG
27416077 TTATG
1 TTATG
27416082 ATATAATATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.41
Consensus pattern (9 bp):
TTATGTAAG
Found at i:27416108 original size:27 final size:27
Alignment explanation
Indices: 27416013--27416110 Score: 110
Period size: 27 Copynumber: 3.6 Consensus size: 27
27416003 GATCCAAAGT
* *
27416013 TTTATGTAAGTTATAATATGATATATA
1 TTTATGTAAGTTATGATATAATATATA
* * *
27416040 TTTATGTAAGTTATG-TA-AGTTAGGAAA
1 TTTATGTAAGTTATGATATA-ATA-TATA
*
27416067 GTTATGTAAGTTATGATATAATATATA
1 TTTATGTAAGTTATGATATAATATATA
27416094 TTTATGTAAGTTATGAT
1 TTTATGTAAGTTATGAT
27416111 CCAAAGTTTT
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
26 4 0.07
27 48 0.84
28 4 0.07
29 1 0.02
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.46
Consensus pattern (27 bp):
TTTATGTAAGTTATGATATAATATATA
Found at i:27416168 original size:35 final size:35
Alignment explanation
Indices: 27416129--27416195 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
27416119 TTTTTTTATT
*
27416129 CTTTAAATGGTTATGTAAGTTATGATAATCATAAA
1 CTTTAAATGGTTATGTAAGTTAAGATAATCATAAA
* *
27416164 CTTTAAATGTTTATGTAAGTTAAGATTATCAT
1 CTTTAAATGGTTATGTAAGTTAAGATAATCAT
27416196 CTTTAAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.37, C:0.06, G:0.13, T:0.43
Consensus pattern (35 bp):
CTTTAAATGGTTATGTAAGTTAAGATAATCATAAA
Found at i:27416214 original size:13 final size:13
Alignment explanation
Indices: 27416196--27416222 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
27416186 AGATTATCAT
27416196 CTTTAAATTTTAA
1 CTTTAAATTTTAA
27416209 CTTTAAATTTTAA
1 CTTTAAATTTTAA
27416222 C
1 C
27416223 CCTTTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (13 bp):
CTTTAAATTTTAA
Found at i:27420203 original size:23 final size:25
Alignment explanation
Indices: 27420158--27420209 Score: 81
Period size: 23 Copynumber: 2.2 Consensus size: 25
27420148 ATAAACATTA
27420158 AAAAATTATTTTAAAAATAAAAAAT
1 AAAAATTATTTTAAAAATAAAAAAT
*
27420183 AAAAA-TATTTT-AAAATTAAAAAT
1 AAAAATTATTTTAAAAATAAAAAAT
27420206 AAAA
1 AAAA
27420210 TAAAAATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 15 0.58
24 6 0.23
25 5 0.19
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (25 bp):
AAAAATTATTTTAAAAATAAAAAAT
Found at i:27423336 original size:11 final size:10
Alignment explanation
Indices: 27423318--27423351 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
27423308 AATCGATGAA
27423318 AAAAAAATAT
1 AAAAAAATAT
*
27423328 AATAAAAATAC
1 AA-AAAAATAT
27423339 AAAAAAATAT
1 AAAAAAATAT
27423349 AAA
1 AAA
27423352 TTACATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (10 bp):
AAAAAAATAT
Found at i:27423416 original size:30 final size:29
Alignment explanation
Indices: 27423382--27423517 Score: 98
Period size: 30 Copynumber: 4.6 Consensus size: 29
27423372 TTTTTGAAAT
27423382 TTACATTTTGACCCCAAACTTTTCTATAAA
1 TTACATTTTGACCCCAAA-TTTTCTATAAA
** *
27423412 TTACATTCAGACCCTTAAATTTTCT-TCAAAA
1 TTACATTTTGACCC-CAAATTTTCTAT--AAA
* * *
27423443 TTACATTTTCACCCCTTAAA-TTCCTAAAAA
1 TTACATTTTGACCCC--AAATTTTCTATAAA
* *
27423473 TTACATTTTGGCCCCATATTTTCCTA-AAA
1 TTACATTTTGACCCCAAATTTT-CTATAAA
* *
27423502 TTGCATTTTTACCCCA
1 TTACATTTTGACCCCA
27423518 GAAACTTTAC
Statistics
Matches: 82, Mismatches: 16, Indels: 17
0.71 0.14 0.15
Matches are distributed among these distances:
28 2 0.02
29 19 0.23
30 37 0.45
31 21 0.26
32 3 0.04
ACGTcount: A:0.32, C:0.25, G:0.04, T:0.40
Consensus pattern (29 bp):
TTACATTTTGACCCCAAATTTTCTATAAA
Found at i:27424091 original size:20 final size:21
Alignment explanation
Indices: 27424068--27424113 Score: 71
Period size: 18 Copynumber: 2.3 Consensus size: 21
27424058 AAGAAAAGCC
27424068 AAGGGGAGAAGAGAAGA-AAA
1 AAGGGGAGAAGAGAAGAGAAA
27424088 AA--GGAGAAGAGAAGAGAAA
1 AAGGGGAGAAGAGAAGAGAAA
27424107 AAGGGGA
1 AAGGGGA
27424114 AGAGAAAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 13 0.57
19 5 0.22
20 2 0.09
21 3 0.13
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (21 bp):
AAGGGGAGAAGAGAAGAGAAA
Found at i:27424093 original size:18 final size:19
Alignment explanation
Indices: 27424072--27424119 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
27424062 AAAGCCAAGG
27424072 GGAGAAGAGAAGA-AAAAA
1 GGAGAAGAGAAGAGAAAAA
27424090 GGAGAAGAGAAGAGAAAAA
1 GGAGAAGAGAAGAGAAAAA
*
27424109 GGGGAAGAGAA
1 GGAGAAGAGAA
27424120 AGGAGGAGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
18 13 0.46
19 15 0.54
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (19 bp):
GGAGAAGAGAAGAGAAAAA
Found at i:27424288 original size:16 final size:15
Alignment explanation
Indices: 27424217--27424300 Score: 64
Period size: 16 Copynumber: 5.5 Consensus size: 15
27424207 TAGGGTTCTT
27424217 AAAAAAAGAAAGAACG-
1 AAAAAAAGAAA-AA-GA
* *
27424233 AAATAAAGGAAAAGA
1 AAAAAAAGAAAAAGA
* *
27424248 AGAAGAAGAAGAAA-A
1 AAAAAAAGAA-AAAGA
*
27424263 GAAAAAAGAAAAAGA
1 AAAAAAAGAAAAAGA
*
27424278 AAAAAATAGAAAAATA
1 AAAAAA-AGAAAAAGA
27424294 AAAAAAA
1 AAAAAAA
27424301 AACAGTAGCA
Statistics
Matches: 53, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
14 4 0.08
15 23 0.43
16 26 0.49
ACGTcount: A:0.79, C:0.01, G:0.17, T:0.04
Consensus pattern (15 bp):
AAAAAAAGAAAAAGA
Found at i:27424290 original size:7 final size:6
Alignment explanation
Indices: 27424237--27424302 Score: 50
Period size: 6 Copynumber: 11.5 Consensus size: 6
27424227 AGAACGAAAT
* * *
27424237 AAAGGA AAAGAA GAAGAA GAAG-A AAAGAAA AAAGAA AAAG-A AAA-AA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAG-AA AAAGAA AAAGAA AAAGAA
* *
27424283 ATAGAA AAATAA AAA-AA AAA
1 AAAGAA AAAGAA AAAGAA AAA
27424303 CAGTAGCAGG
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
5 16 0.32
6 29 0.58
7 5 0.10
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (6 bp):
AAAGAA
Found at i:27424290 original size:21 final size:21
Alignment explanation
Indices: 27424218--27424302 Score: 73
Period size: 21 Copynumber: 3.9 Consensus size: 21
27424208 AGGGTTCTTA
*
27424218 AAAAAAGAAAGAACGAAATAAAGG
1 AAAAAAGAAA-AA-GAAA-AAAAG
* *
27424242 AAAAGAAGAAGAAGAAGAAAAG
1 AAAA-AAGAAAAAGAAAAAAAG
*
27424264 AAAAAAGAAAAAGAAAAAAAT
1 AAAAAAGAAAAAGAAAAAAAG
*
27424285 AGAAAAATAAAAA-AAAAA
1 A-AAAAAGAAAAAGAAAAA
27424303 CAGTAGCAGG
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
21 20 0.38
22 18 0.35
23 3 0.06
24 6 0.12
25 5 0.10
ACGTcount: A:0.79, C:0.01, G:0.16, T:0.04
Consensus pattern (21 bp):
AAAAAAGAAAAAGAAAAAAAG
Found at i:27424542 original size:15 final size:16
Alignment explanation
Indices: 27424524--27424558 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
27424514 AAAAAAAGGG
27424524 AAAGAGAGAAAAAA-A
1 AAAGAGAGAAAAAAGA
*
27424539 AAAGAGGGAAAAAAGA
1 AAAGAGAGAAAAAAGA
27424555 AAAG
1 AAAG
27424559 GGCCCACAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (16 bp):
AAAGAGAGAAAAAAGA
Found at i:27424872 original size:20 final size:20
Alignment explanation
Indices: 27424844--27424881 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
27424834 GAAAATATTC
*
27424844 AAAATTCCTCGTGTTTTAAT
1 AAAAATCCTCGTGTTTTAAT
27424864 AAAAATCCTCGTGTTTTA
1 AAAAATCCTCGTGTTTTA
27424882 TTAGAATCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.42
Consensus pattern (20 bp):
AAAAATCCTCGTGTTTTAAT
Found at i:27425026 original size:17 final size:17
Alignment explanation
Indices: 27424999--27425044 Score: 67
Period size: 17 Copynumber: 2.6 Consensus size: 17
27424989 AAAAAAATCG
27424999 TGTTTCAAAAATTT-TCA
1 TGTTTC-AAAATTTCTCA
27425016 TGTCTTCAAAATTTCTCA
1 TGT-TTCAAAATTTCTCA
27425034 TGTTTCAAAAT
1 TGTTTCAAAAT
27425045 AATAATAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 18 0.67
18 9 0.33
ACGTcount: A:0.33, C:0.15, G:0.07, T:0.46
Consensus pattern (17 bp):
TGTTTCAAAATTTCTCA
Found at i:27425142 original size:49 final size:50
Alignment explanation
Indices: 27425054--27425173 Score: 210
Period size: 49 Copynumber: 2.5 Consensus size: 50
27425044 TAATAATAAT
27425054 AAAATTTCCCGTGTTTC-AAAAAATATATTCGTGTTTC-TTTTTTTCAAA
1 AAAATTTCCCGTGTTTCAAAAAAATATATTCGTGTTTCTTTTTTTTCAAA
27425102 AAAATTTCCCGTGTTTCAAAAAAATATATTCGTGTTTCTTTTTTTTCAAA
1 AAAATTTCCCGTGTTTCAAAAAAATATATTCGTGTTTCTTTTTTTTCAAA
*
27425152 AAAAATT-CCGTGTTTCAAAAAA
1 AAAATTTCCCGTGTTTCAAAAAA
27425174 CTCTCTTGAA
Statistics
Matches: 69, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
48 17 0.25
49 35 0.51
50 17 0.25
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.42
Consensus pattern (50 bp):
AAAATTTCCCGTGTTTCAAAAAAATATATTCGTGTTTCTTTTTTTTCAAA
Found at i:27425282 original size:44 final size:44
Alignment explanation
Indices: 27425202--27425289 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 44
27425192 GATGTTATCG
* * * * ** *
27425202 TGTTTTCAAAAAATTCCCGTGTTTGACAAATTTTCGTTTTTTCA
1 TGTTCTCAAAAAATTCCCATGTTTCAAAAAGCTTCGTGTTTTCA
*
27425246 TGTTCTCAAAAAATTCTCATGTTTCAAAAAGCTTCGTGTTTTCA
1 TGTTCTCAAAAAATTCCCATGTTTCAAAAAGCTTCGTGTTTTCA
27425290 AAAATCCTCA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.27, C:0.17, G:0.11, T:0.44
Consensus pattern (44 bp):
TGTTCTCAAAAAATTCCCATGTTTCAAAAAGCTTCGTGTTTTCA
Found at i:27425300 original size:35 final size:35
Alignment explanation
Indices: 27425254--27425327 Score: 130
Period size: 35 Copynumber: 2.1 Consensus size: 35
27425244 CATGTTCTCA
*
27425254 AAAAATTCTCATGTTTCAAAAAGCTTCGTGTTTTC
1 AAAAATCCTCATGTTTCAAAAAGCTTCGTGTTTTC
*
27425289 AAAAATCCTCATGTTTCAAAAATCTTCGTGTTTTC
1 AAAAATCCTCATGTTTCAAAAAGCTTCGTGTTTTC
27425324 AAAA
1 AAAA
27425328 TTCTAGTGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (35 bp):
AAAAATCCTCATGTTTCAAAAAGCTTCGTGTTTTC
Found at i:27425323 original size:18 final size:18
Alignment explanation
Indices: 27425267--27425491 Score: 146
Period size: 18 Copynumber: 12.6 Consensus size: 18
27425257 AATTCTCATG
*
27425267 TTTCAAAAAGCTTCGTGT
1 TTTCAAAAATCTTCGTGT
* *
27425285 TTTCAAAAATCCTCATG-
1 TTTCAAAAATCTTCGTGT
27425302 TTTCAAAAATCTTCGTGT
1 TTTCAAAAATCTTCGTGT
* *
27425320 TTTCAAAATTC-TAGTG-
1 TTTCAAAAATCTTCGTGT
** * *
27425336 TAACAAAAATTTTCATGT
1 TTTCAAAAATCTTCGTGT
27425354 TTTCAAAAAT-TTCCCGTGT
1 TTTCAAAAATCTT--CGTGT
27425373 TTTCAAAAAT-TCTCGT-T
1 TTTCAAAAATCT-TCGTGT
* * *
27425390 TTTCGAAAATTTTCTTGT
1 TTTCAAAAATCTTCGTGT
27425408 TTTCAGAAAAAAT-TTCCGTGT
1 TTTC---AAAAATCTT-CGTGT
* *
27425429 TTT-ATAAATTTTCGTGT
1 TTTCAAAAATCTTCGTGT
* *
27425446 TTTCAAAAAAATC-CCGT-C
1 TTTC--AAAAATCTTCGTGT
*
27425464 TTTCAAAAATTTTCGTGT
1 TTTCAAAAATCTTCGTGT
27425482 TTTCAAAAAT
1 TTTCAAAAAT
27425492 TGACCGTGTT
Statistics
Matches: 161, Mismatches: 28, Indels: 36
0.72 0.12 0.16
Matches are distributed among these distances:
16 13 0.08
17 53 0.33
18 57 0.35
19 18 0.11
20 8 0.05
21 12 0.07
ACGTcount: A:0.32, C:0.16, G:0.10, T:0.43
Consensus pattern (18 bp):
TTTCAAAAATCTTCGTGT
Found at i:27425343 original size:34 final size:34
Alignment explanation
Indices: 27425255--27425361 Score: 108
Period size: 35 Copynumber: 3.1 Consensus size: 34
27425245 ATGTTCTCAA
* ** *
27425255 AAAATTCTCATGTTTCAAAAAGCTTCGTGTTTTC
1 AAAATCCTCATGTAACAAAAATCTTCGTGTTTTC
**
27425289 AAAAATCCTCATGTTTCAAAAATCTTCGTGTTTTC
1 -AAAATCCTCATGTAACAAAAATCTTCGTGTTTTC
* * *
27425324 AAAATTCT-AGTGTAACAAAAATTTTCATGTTTTC
1 AAAATCCTCA-TGTAACAAAAATCTTCGTGTTTTC
27425358 AAAA
1 AAAA
27425362 ATTTCCCGTG
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
33 1 0.02
34 31 0.48
35 32 0.50
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (34 bp):
AAAATCCTCATGTAACAAAAATCTTCGTGTTTTC
Found at i:27425492 original size:18 final size:18
Alignment explanation
Indices: 27425240--27425525 Score: 185
Period size: 17 Copynumber: 16.0 Consensus size: 18
27425230 AATTTTCGTT
* *
27425240 TTTTCATGTTCTCAAAAAA
1 TTTTCGTGTTTTC-AAAAA
* *
27425259 TTCTCATG-TTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
**
27425276 GCTTCGTGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
** *
27425294 TCCTCATG-TTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
*
27425311 TCTTCGTGTTTTC-AAAA
1 TTTTCGTGTTTTCAAAAA
* * **
27425328 TTCTAGTG-TAACAAAAA
1 TTTTCGTGTTTTCAAAAA
*
27425345 TTTTCATGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
*
27425363 TTTCCCGTGTTTTCAAAAA
1 TTT-TCGTGTTTTCAAAAA
* *
27425382 TTCTCGT-TTTTCGAAAA
1 TTTTCGTGTTTTCAAAAA
*
27425399 TTTTCTTGTTTTCAGAAAAAA
1 TTTTCGTGTTTTC---AAAAA
* *
27425420 TTTCCGTGTTTT-ATAAA
1 TTTTCGTGTTTTCAAAAA
27425437 TTTTCGTGTTTTCAAAAAA
1 TTTTCGTGTTTTC-AAAAA
* ** *
27425456 ATCCCGT-CTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
27425473 TTTTCGTGTTTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
** *
27425491 TTGACCGTG-TTTCATAAA
1 TT-TTCGTGTTTTCAAAAA
*
27425509 TTTCCGTG-TTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
27425526 AAAATCTCAT
Statistics
Matches: 207, Mismatches: 47, Indels: 28
0.73 0.17 0.10
Matches are distributed among these distances:
16 2 0.01
17 93 0.45
18 64 0.31
19 34 0.16
21 14 0.07
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.43
Consensus pattern (18 bp):
TTTTCGTGTTTTCAAAAA
Found at i:27425517 original size:17 final size:17
Alignment explanation
Indices: 27425246--27425525 Score: 131
Period size: 18 Copynumber: 15.6 Consensus size: 17
27425236 CGTTTTTTCA
* *
27425246 TGTTCTCAAAAAATTCTCA
1 TGTT-TCAAAAATTTC-CG
*
27425265 TGTTTCAAAAAGCTT-CG
1 TGTTTCAAAAA-TTTCCG
* *
27425282 TGTTTTCAAAAA-TCCTCA
1 TG-TTTCAAAAATTTC-CG
27425300 TGTTTCAAAAATCTT-CG
1 TGTTTCAAAAAT-TTCCG
*
27425317 TGTTTTC-AAAA-TTCTAG
1 TG-TTTCAAAAATTTC-CG
** * *
27425334 TGTAACAAAAATTTTCA
1 TGTTTCAAAAATTTCCG
27425351 TGTTTTCAAAAATTTCCCG
1 TG-TTTCAAAAATTT-CCG
27425370 TGTTTTCAAAAA-TTCTCG
1 TG-TTTCAAAAATTTC-CG
* * * *
27425388 TTTTTCGAAAATTTTCT
1 TGTTTCAAAAATTTCCG
27425405 TGTTTTCAGAAAAAATTTCCG
1 TG-TTTC---AAAAATTTCCG
* * *
27425426 TGTTTTATAAATTTTCG
1 TGTTTCAAAAATTTCCG
* *
27425443 TGTTTTCAAAAAAATCCCG
1 TG-TTTC-AAAAATTTCCG
* *
27425462 TCTTTCAAAAATTTTCG
1 TGTTTCAAAAATTTCCG
*
27425479 TGTTTTCAAAAATTGACCG
1 TG-TTTCAAAAATT-TCCG
*
27425498 TGTTTCATAAATTTCCG
1 TGTTTCAAAAATTTCCG
27425515 TGTTTCAAAAA
1 TGTTTCAAAAA
27425526 AAAATCTCAT
Statistics
Matches: 196, Mismatches: 42, Indels: 48
0.69 0.15 0.17
Matches are distributed among these distances:
15 2 0.01
16 3 0.02
17 72 0.37
18 74 0.38
19 32 0.16
20 3 0.02
21 10 0.05
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.42
Consensus pattern (17 bp):
TGTTTCAAAAATTTCCG
Found at i:27425526 original size:36 final size:36
Alignment explanation
Indices: 27425354--27425526 Score: 158
Period size: 36 Copynumber: 4.8 Consensus size: 36
27425344 ATTTTCATGT
* * *
27425354 TTTCAAAAATTTCCCGTGTTTTC-AAAAATT-CTCGTT
1 TTTCATAAATTT-TCGTGTTTTCAAAAAATTAC-CGTG
* *
27425390 TTTCGA-AAATTTTCTTGTTTTCAGAAAAAATTTCCGTG
1 TTTC-ATAAATTTTCGTGTTTTC--AAAAAATTACCGTG
* * * *
27425428 TTTTATAAATTTTCGTGTTTTCAAAAAAATCCCGTC
1 TTTCATAAATTTTCGTGTTTTCAAAAAATTACCGTG
*
27425464 TTTCAAAAATTTTCGTGTTTTC-AAAAATTGACCGTG
1 TTTCATAAATTTTCGTGTTTTCAAAAAATT-ACCGTG
*
27425500 TTTCATAAATTTCCGTG-TTTCAAAAAA
1 TTTCATAAATTTTCGTGTTTTCAAAAAA
27425527 AAATCTCATG
Statistics
Matches: 114, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
35 18 0.16
36 65 0.57
37 2 0.02
38 28 0.25
39 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.43
Consensus pattern (36 bp):
TTTCATAAATTTTCGTGTTTTCAAAAAATTACCGTG
Found at i:27425547 original size:72 final size:72
Alignment explanation
Indices: 27425354--27425527 Score: 192
Period size: 74 Copynumber: 2.4 Consensus size: 72
27425344 ATTTTCATGT
* * * * * * *
27425354 TTTCAAAAATTTCCCGTGTTTTC-AAAAATTCTCGTTTTTCGAAAATTTTCTTGTTTTCAGAAAA
1 TTTCATAAATTT-CCGTGTTTTCAAAAAAATCCCATCTTTCAAAAATTTTCGTGTTTTC--AAAA
*
27425418 AATTTCCGTG
63 AATTACCGTG
* * *
27425428 TTTTATAAATTTTCGTGTTTTCAAAAAAATCCCGTCTTTCAAAAATTTTCGTGTTTTC-AAAAAT
1 TTTCATAAATTTCCGTGTTTTCAAAAAAATCCCATCTTTCAAAAATTTTCGTGTTTTCAAAAAAT
27425492 TGACCGTG
66 T-ACCGTG
27425500 TTTCATAAATTTCCGTG-TTTCAAAAAAA
1 TTTCATAAATTTCCGTGTTTTCAAAAAAA
27425528 AATCTCATGT
Statistics
Matches: 87, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
71 18 0.21
72 20 0.23
73 9 0.10
74 40 0.46
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.43
Consensus pattern (72 bp):
TTTCATAAATTTCCGTGTTTTCAAAAAAATCCCATCTTTCAAAAATTTTCGTGTTTTCAAAAAAT
TACCGTG
Found at i:27425575 original size:17 final size:16
Alignment explanation
Indices: 27425549--27425637 Score: 52
Period size: 16 Copynumber: 5.1 Consensus size: 16
27425539 TCGTAATTTA
* *
27425549 TCAAATTTTTTGTGTTT
1 TCAAAATTTTCGTG-TT
27425566 TCAAAATTTTCGTGTT
1 TCAAAATTTTCGTGTT
**
27425582 TCAAAAAGAAAATTCGTGTTT
1 TC---AA-AATTTTCGTG-TT
* *
27425603 TGAAAAAATTCTCGTGTT
1 T-CA-AAATTTTCGTGTT
27425621 TCAAAATTTTCGTGTT
1 TCAAAATTTTCGTGTT
27425637 T
1 T
27425638 TTTTAAAAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 15
0.69 0.12 0.19
Matches are distributed among these distances:
16 17 0.31
17 13 0.24
18 3 0.05
19 10 0.18
20 9 0.16
21 3 0.05
ACGTcount: A:0.29, C:0.10, G:0.13, T:0.47
Consensus pattern (16 bp):
TCAAAATTTTCGTGTT
Found at i:27425676 original size:38 final size:38
Alignment explanation
Indices: 27425600--27425700 Score: 95
Period size: 36 Copynumber: 2.7 Consensus size: 38
27425590 AAAATTCGTG
* *
27425600 TTTTGAAAAAATTCTCGTGTTTCAAAATTTTCGTGTTT
1 TTTTAAAAAAATTCTCGTGTTTCAAAATTTTCGCGTTT
*
27425638 TTTTAAAAAAATT-TCTTGTTTCTAAAATTCTT-GCG--T
1 TTTTAAAAAAATTCTCGTGTTTC-AAAATT-TTCGCGTTT
* *
27425674 TTTAAAAAAAAAT-TCGTGTTTTCAAAA
1 TTTTAAAAAAATTCTCGTG-TTTCAAAA
27425701 AAGGGGTTGT
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
36 20 0.37
37 12 0.22
38 20 0.37
39 2 0.04
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.47
Consensus pattern (38 bp):
TTTTAAAAAAATTCTCGTGTTTCAAAATTTTCGCGTTT
Found at i:27426492 original size:25 final size:25
Alignment explanation
Indices: 27426475--27426528 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
27426465 ATGCAGTAGG
*
27426475 GGAGTGTCGACGGTGATGCGGCAAA
1 GGAGTGTCGACGGTGATGCAGCAAA
** *
27426500 GGAGTGTCGACGGCAATGCGGCAAA
1 GGAGTGTCGACGGTGATGCAGCAAA
27426525 GGAG
1 GGAG
27426529 ACAGTTGACG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.44, T:0.13
Consensus pattern (25 bp):
GGAGTGTCGACGGTGATGCAGCAAA
Found at i:27426746 original size:39 final size:41
Alignment explanation
Indices: 27426686--27426854 Score: 173
Period size: 41 Copynumber: 4.2 Consensus size: 41
27426676 AAAATGATAC
* * *
27426686 TTTGTGGCGTTTTTCTTAT-AGCACCGCTAATGCTTAACCT
1 TTTGTGGCGTTTTTCTCATAAACACCGCTAATGCTTGACCT
* * * * *
27426726 TTTGTGG-GTTTTTATCAT-AGCGCCGCTAATACTTGACAT
1 TTTGTGGCGTTTTTCTCATAAACACCGCTAATGCTTGACCT
* * * *
27426765 TTTGCGGCGTTTTTCTCATAAATACTGCTAGTGCTTGACCT
1 TTTGTGGCGTTTTTCTCATAAACACCGCTAATGCTTGACCT
* * *
27426806 TTTGTGGCGTTTTTCTCATAAACGCCGCTACTGCTTTACCT
1 TTTGTGGCGTTTTTCTCATAAACACCGCTAATGCTTGACCT
*
27426847 ATTGTGGC
1 TTTGTGGC
27426855 ATTTCTCCGT
Statistics
Matches: 105, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 32 0.30
40 17 0.16
41 56 0.53
ACGTcount: A:0.17, C:0.22, G:0.20, T:0.41
Consensus pattern (41 bp):
TTTGTGGCGTTTTTCTCATAAACACCGCTAATGCTTGACCT
Found at i:27429749 original size:40 final size:40
Alignment explanation
Indices: 27429676--27429751 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
27429666 ATATGCCTTA
*
27429676 AAAATTATAAAAAATATAAATATAAATATAAAAATTCAGG
1 AAAATTATAAAAAATATAAATACAAATATAAAAATTCAGG
*
27429716 AAAATTATATAAAAATTTCAAA-ACAAATA-AAAAATT
1 AAAATTATA-AAAAATAT-AAATACAAATATAAAAATT
27429752 ATTCAATTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
40 16 0.50
41 13 0.41
42 3 0.09
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.28
Consensus pattern (40 bp):
AAAATTATAAAAAATATAAATACAAATATAAAAATTCAGG
Found at i:27434345 original size:51 final size:50
Alignment explanation
Indices: 27434286--27434405 Score: 188
Period size: 50 Copynumber: 2.4 Consensus size: 50
27434276 CCTCTCTCAT
*
27434286 ATTTCCTCTCAATTTCCTTCCAAAAT-TCTCATAAATCCATATTTAATTTCA
1 ATTTCCTCTCAATTTCCTTCCAAAATCTCTC--AAAGCCATATTTAATTTCA
*
27434337 ATTTCCTCTCAATTTCATTCCAAAATCTCTCAAAGCCATATTTAATTTCA
1 ATTTCCTCTCAATTTCCTTCCAAAATCTCTCAAAGCCATATTTAATTTCA
*
27434387 ATTTGCTCTCAATTTCCTT
1 ATTTCCTCTCAATTTCCTT
27434406 TTTTAAAATA
Statistics
Matches: 64, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
50 35 0.55
51 25 0.39
52 4 0.06
ACGTcount: A:0.29, C:0.26, G:0.02, T:0.43
Consensus pattern (50 bp):
ATTTCCTCTCAATTTCCTTCCAAAATCTCTCAAAGCCATATTTAATTTCA
Found at i:27435534 original size:7 final size:7
Alignment explanation
Indices: 27435518--27435577 Score: 111
Period size: 7 Copynumber: 8.6 Consensus size: 7
27435508 TGTAAATAGA
*
27435518 TATTTTG
1 TATTTAG
27435525 TATTTAG
1 TATTTAG
27435532 TATTTAG
1 TATTTAG
27435539 TATTTAG
1 TATTTAG
27435546 TATTTAG
1 TATTTAG
27435553 TATTTAG
1 TATTTAG
27435560 TATTTAG
1 TATTTAG
27435567 TATTTAG
1 TATTTAG
27435574 TATT
1 TATT
27435578 ATGTATATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
7 52 1.00
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:27436255 original size:18 final size:18
Alignment explanation
Indices: 27436228--27436267 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
27436218 CAGGTGCATT
*
27436228 TCCTATCCCTTATATGTA
1 TCCTAACCCTTATATGTA
27436246 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
27436264 TCCT
1 TCCT
27436268 TTTCCGAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.30, G:0.05, T:0.42
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:27436720 original size:25 final size:25
Alignment explanation
Indices: 27436692--27436914 Score: 143
Period size: 25 Copynumber: 9.3 Consensus size: 25
27436682 TGAATATTTT
*
27436692 GAAGTTTGTTTGATGTAATAAAATA
1 GAAGTTTATTTGATGTAATAAAATA
*
27436717 GAAGTTT-TATTGATGTAAAAAAAATTA
1 GAAGTTTAT-TTGATGT-AATAAAA-TA
* ** *
27436744 -AA-TTTTTTTGA-GT--T-ATTTT
1 GAAGTTTATTTGATGTAATAAAATA
27436763 GATA-TT-ATTTGATGTAATAAAATA
1 GA-AGTTTATTTGATGTAATAAAATA
*
27436787 GAAGTTTATTTGATGTAATAAAAATT
1 GAAGTTTATTTGATGTAAT-AAAATA
* * * * *
27436813 TAAATTTTTTTGA-GT--T--ATTT
1 GAAGTTTATTTGATGTAATAAAATA
*
27436833 TAA-TATTATTTGATGTAATAAAATA
1 GAAGT-TTATTTGATGTAATAAAATA
*
27436858 AAAGTTTATTTGATGTAATAAAATA
1 GAAGTTTATTTGATGTAATAAAATA
* *
27436883 GAAGTTTATATGAAGTAATAAAATA
1 GAAGTTTATTTGATGTAATAAAATA
27436908 GAAGTTT
1 GAAGTTT
27436915 TACTAACCTA
Statistics
Matches: 157, Mismatches: 21, Indels: 40
0.72 0.10 0.18
Matches are distributed among these distances:
19 2 0.01
20 20 0.13
21 7 0.04
23 4 0.03
24 9 0.06
25 88 0.56
26 25 0.16
27 2 0.01
ACGTcount: A:0.42, C:0.00, G:0.14, T:0.44
Consensus pattern (25 bp):
GAAGTTTATTTGATGTAATAAAATA
Found at i:27436774 original size:70 final size:70
Alignment explanation
Indices: 27436700--27436880 Score: 301
Period size: 71 Copynumber: 2.6 Consensus size: 70
27436690 TTGAAGTTTG
*
27436700 TTTGATGTAATAAAATAGAAGTTT-TATTGATGTAAAAAAAATTAAATTTTTTTGAGTTATTTTG
1 TTTGATGTAATAAAATAGAAGTTTAT-TTGATGTAAAAAAAATTAAATTTTTTTGAGTTATTTTA
27436764 ATATTA
65 ATATTA
*
27436770 TTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAAATTTAAATTTTTTTGAGTTATTTTA
1 TTTGATGTAATAAAATAGAAGTTTATTTGATGTAA-AAAAAATTAAATTTTTTTGAGTTATTTTA
27436835 ATATTA
65 ATATTA
* *
27436841 TTTGATGTAATAAAATAAAAGTTTATTTGATGTAATAAAA
1 TTTGATGTAATAAAATAGAAGTTTATTTGATGTAAAAAAA
27436881 TAGAAGTTTA
Statistics
Matches: 105, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
70 37 0.35
71 68 0.65
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.46
Consensus pattern (70 bp):
TTTGATGTAATAAAATAGAAGTTTATTTGATGTAAAAAAAATTAAATTTTTTTGAGTTATTTTAA
TATTA
Found at i:27436943 original size:23 final size:23
Alignment explanation
Indices: 27436917--27437106 Score: 326
Period size: 23 Copynumber: 8.3 Consensus size: 23
27436907 AGAAGTTTTA
27436917 CTAACCTAATTAAGTTGAAAACC
1 CTAACCTAATTAAGTTGAAAACC
*
27436940 CTAACCTAATTAAATTGAAAACC
1 CTAACCTAATTAAGTTGAAAACC
*
27436963 CTAACCTATTTAAGTTGAAAACC
1 CTAACCTAATTAAGTTGAAAACC
* *
27436986 CTAACCTAATTAAATTAAAAACC
1 CTAACCTAATTAAGTTGAAAACC
*
27437009 CTAACCTATTTAAGTTGAAAACC
1 CTAACCTAATTAAGTTGAAAACC
27437032 CTAACCTAATTAAGTTGAAAACC
1 CTAACCTAATTAAGTTGAAAACC
*
27437055 CTAACCTAATTAAGTTGAAAACT
1 CTAACCTAATTAAGTTGAAAACC
27437078 CTAACCTAATTAAGTTGAAAACC
1 CTAACCTAATTAAGTTGAAAACC
27437101 CTAACC
1 CTAACC
27437107 CTAAACTTAA
Statistics
Matches: 155, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 155 1.00
ACGTcount: A:0.44, C:0.22, G:0.07, T:0.27
Consensus pattern (23 bp):
CTAACCTAATTAAGTTGAAAACC
Found at i:27452129 original size:18 final size:17
Alignment explanation
Indices: 27452108--27452141 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
27452098 TTAACATGGG
27452108 AAATTATAAAATTTTGAT
1 AAATT-TAAAATTTTGAT
*
27452126 AAATTTAGAATTTTGA
1 AAATTTAAAATTTTGA
27452142 GTTTAAGGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (17 bp):
AAATTTAAAATTTTGAT
Found at i:27457792 original size:2 final size:2
Alignment explanation
Indices: 27457785--27457814 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
27457775 ATGGTAAAGC
27457785 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
27457815 TGAAAAGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:27457873 original size:5 final size:5
Alignment explanation
Indices: 27457863--27457891 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
27457853 GATGGCCTCC
27457863 TTCTT TTCTT TTCTT TTCTT TTCTT TTCT
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTCT
27457892 GCTTTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (5 bp):
TTCTT
Found at i:27460427 original size:24 final size:23
Alignment explanation
Indices: 27460380--27460428 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
27460370 AAAAAGAAAC
***
27460380 ATATTTATACTAATAAATGTTAA
1 ATATTTATACTAATAAAAACTAA
27460403 ATATATTATACTAATAAAAACTAA
1 ATAT-TTATACTAATAAAAACTAA
27460427 AT
1 AT
27460429 CTTCTAGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (23 bp):
ATATTTATACTAATAAAAACTAA
Found at i:27464149 original size:43 final size:43
Alignment explanation
Indices: 27464088--27464174 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
27464078 CTTAGTCAAG
27464088 TATTATTGTTGGATAGGACAACAATAATGCATTAAGACTAACA
1 TATTATTGTTGGATAGGACAACAATAATGCATTAAGACTAACA
27464131 TATTATTGTTGGATAGGACAACAATAATGCATTAAGACTAACA
1 TATTATTGTTGGATAGGACAACAATAATGCATTAAGACTAACA
27464174 T
1 T
27464175 GTAGTTGATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.31
Consensus pattern (43 bp):
TATTATTGTTGGATAGGACAACAATAATGCATTAAGACTAACA
Found at i:27464721 original size:14 final size:14
Alignment explanation
Indices: 27464702--27464728 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
27464692 AAGGATTATT
27464702 TCATAAAAGGTTAA
1 TCATAAAAGGTTAA
27464716 TCATAAAAGGTTA
1 TCATAAAAGGTTA
27464729 TGTCGAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.07, G:0.15, T:0.30
Consensus pattern (14 bp):
TCATAAAAGGTTAA
Found at i:27467815 original size:42 final size:42
Alignment explanation
Indices: 27467723--27467842 Score: 168
Period size: 42 Copynumber: 2.8 Consensus size: 42
27467713 TAATAAAAAA
* * * ** *
27467723 CGCCACTAAAGATCATGTTCTTTAATGGCGCTTTGTTCCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTTCCTAAG
*
27467766 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCTAAG
27467808 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
27467843 GTTTGTAAAC
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
42 45 0.64
43 25 0.36
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCTAAG
Found at i:27468390 original size:27 final size:27
Alignment explanation
Indices: 27468352--27468446 Score: 129
Period size: 27 Copynumber: 3.5 Consensus size: 27
27468342 GAGGGTATCT
*
27468352 CATAGACGGCACCAAAGGTGCCTTTCC
1 CATAGGCGGCACCAAAGGTGCCTTTCC
* *
27468379 CATAGGCGGCACCGATA-GTGCCATTCC
1 CATAGGCGGCACC-AAAGGTGCCTTTCC
* *
27468406 CATGGGCGGCACCGAAGGTGCCTTTCC
1 CATAGGCGGCACCAAAGGTGCCTTTCC
27468433 CATAGGCGGCACCA
1 CATAGGCGGCACCA
27468447 CTTGTGTCAT
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.02
27 54 0.95
28 2 0.04
ACGTcount: A:0.22, C:0.34, G:0.27, T:0.17
Consensus pattern (27 bp):
CATAGGCGGCACCAAAGGTGCCTTTCC
Found at i:27468796 original size:43 final size:42
Alignment explanation
Indices: 27468741--27468856 Score: 114
Period size: 43 Copynumber: 2.8 Consensus size: 42
27468731 TGTTAGTAAA
* * *
27468741 AAAACTAGTATTATTATTATGGTTAGTTATTATTTTTAGTA-
1 AAAACTATTATTATTGTTATGGTTAGTTATTATTTTGAGTAT
* * *
27468782 AAACCCTAATTATTATTGTTA--GTTAG-TGTTATTTTGGGTAT
1 AAA-ACT-ATTATTATTGTTATGGTTAGTTATTATTTTGAGTAT
27468823 AAAACTATTATTATTGTTATTGTGTTAGTTATTA
1 AAAACTATTATTATTGTTA-TG-GTTAGTTATTA
27468857 GGGTTAGTGG
Statistics
Matches: 59, Mismatches: 8, Indels: 13
0.74 0.10 0.16
Matches are distributed among these distances:
39 13 0.22
40 13 0.22
41 11 0.19
42 2 0.03
43 16 0.27
44 4 0.07
ACGTcount: A:0.31, C:0.04, G:0.14, T:0.51
Consensus pattern (42 bp):
AAAACTATTATTATTGTTATGGTTAGTTATTATTTTGAGTAT
Found at i:27469463 original size:43 final size:43
Alignment explanation
Indices: 27469409--27469720 Score: 392
Period size: 43 Copynumber: 7.3 Consensus size: 43
27469399 GCGCCGGAAA
* *
27469409 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCTCGC
1 AAACGCTGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCTCAC
*
27469452 AAACGCTGCTAAAGACCAAGACCTTCAGCGGCGCTTCTCTCAC
1 AAACGCTGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCTCAC
* *
27469495 AAACGCCGCTAAAGACCAATACCTTTAGCGGCGCTTCTCTCAC
1 AAACGCTGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCTCAC
* ** *
27469538 AAACGCTGCTAAAGACCAATAATTTTAGCGGCGCTTCTCTTAC
1 AAACGCTGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCTCAC
* * * **
27469581 AAACGCCGCTAAAGACGAAGATCTTTAGCGGCGCTTCAATCAC
1 AAACGCTGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCTCAC
* *
27469624 AAACGCTGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCTTAC
1 AAACGCTGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCTCAC
* * * * * * *
27469667 AGACG-TCGCTAAAAACTAGGACTTTTAGCGGCGCTTCTATTAC
1 AAACGCT-GCTAAAGACCAAGACCTTTAGCGGCGCTTCTCTCAC
*
27469710 AAACGCCGCTA
1 AAACGCTGCTA
27469721 TAAATTTGAC
Statistics
Matches: 233, Mismatches: 34, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
42 1 0.00
43 232 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (43 bp):
AAACGCTGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCTCAC
Found at i:27469554 original size:86 final size:86
Alignment explanation
Indices: 27469409--27469720 Score: 435
Period size: 86 Copynumber: 3.6 Consensus size: 86
27469399 GCGCCGGAAA
* *
27469409 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCTCGCAAACGCTGCTAAAGACCAAGAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCTATCACAAACGCTGCTAAAGACCAAGAC
* *
27469474 CTTCAGCGGCGCTTCTCTCAC
66 CTTTAGCGGCGCTTCTCTTAC
* * * *
27469495 AAACGCCGCTAAAGACCAATACCTTTAGCGGCGCTTCTCTCACAAACGCTGCTAAAGACCAATAA
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCTATCACAAACGCTGCTAAAGACCAAGAC
*
27469560 TTTTAGCGGCGCTTCTCTTAC
66 CTTTAGCGGCGCTTCTCTTAC
* * *
27469581 AAACGCCGCTAAAGACGAAGATCTTTAGCGGCGCTTCAATCACAAACGCTGCTAAAGACCAAGAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCTATCACAAACGCTGCTAAAGACCAAGAC
*
27469646 CTTTAGCGGCGCTTTTCTTAC
66 CTTTAGCGGCGCTTCTCTTAC
* * * * * * * *
27469667 AGACGTCGCTAAAAACTAGGACTTTTAGCGGCGCTTCTATTACAAACGCCGCTA
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCTATCACAAACGCTGCTA
27469721 TAAATTTGAC
Statistics
Matches: 200, Mismatches: 26, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
86 200 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (86 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCTATCACAAACGCTGCTAAAGACCAAGAC
CTTTAGCGGCGCTTCTCTTAC
Found at i:27469748 original size:86 final size:86
Alignment explanation
Indices: 27469409--27469766 Score: 355
Period size: 86 Copynumber: 4.2 Consensus size: 86
27469399 GCGCCGGAAA
* * * ** * *
27469409 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTCTCTCGCAAACGCTGCTAAAGACCAAGAC
1 AAACGCCGCTAAAAACGAAGATCTTTAGCGGCGCTTCAATCACAAACGCCGCTAAAGACCAAGAC
* * * *
27469474 CTTCAGCGGCGCTTCTCTCAC
66 TTTTAGCGGCGCTTTTCTTAC
* * * * ** * * *
27469495 AAACGCCGCTAAAGACCAATACCTTTAGCGGCGCTTCTCTCACAAACGCTGCTAAAGACCAATAA
1 AAACGCCGCTAAAAACGAAGATCTTTAGCGGCGCTTCAATCACAAACGCCGCTAAAGACCAAGAC
*
27469560 TTTTAGCGGCGCTTCTCTTAC
66 TTTTAGCGGCGCTTTTCTTAC
* *
27469581 AAACGCCGCTAAAGACGAAGATCTTTAGCGGCGCTTCAATCACAAACGCTGCTAAAGACCAAGAC
1 AAACGCCGCTAAAAACGAAGATCTTTAGCGGCGCTTCAATCACAAACGCCGCTAAAGACCAAGAC
*
27469646 CTTTAGCGGCGCTTTTCTTAC
66 TTTTAGCGGCGCTTTTCTTAC
* * * * * * ***
27469667 AGACGTCGCTAAAAACTAGGA-CTTTTAGCGGCGCTTCTATTACAAACGCCGCTATAA-A-TTTG
1 AAACGCCGCTAAAAACGAAGATC-TTTAGCGGCGCTTCAATCACAAACGCCGCTA-AAGACCAAG
* *
27469729 ACTTTTAGCGACGCTTTT-TCAC
64 ACTTTTAGCGGCGCTTTTCTTAC
27469751 AAACGCCGCTAAAAAC
1 AAACGCCGCTAAAAAC
27469767 ATAACTTTTA
Statistics
Matches: 238, Mismatches: 32, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
84 17 0.07
85 18 0.08
86 201 0.84
87 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.23
Consensus pattern (86 bp):
AAACGCCGCTAAAAACGAAGATCTTTAGCGGCGCTTCAATCACAAACGCCGCTAAAGACCAAGAC
TTTTAGCGGCGCTTTTCTTAC
Found at i:27469947 original size:6 final size:6
Alignment explanation
Indices: 27469938--27469963 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
27469928 AAAATTAATG
27469938 AATTTA AATTTA AATTTA AATTTA AA
1 AATTTA AATTTA AATTTA AATTTA AA
27469964 ATATTATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (6 bp):
AATTTA
Found at i:27475562 original size:6 final size:7
Alignment explanation
Indices: 27475538--27475722 Score: 74
Period size: 7 Copynumber: 26.0 Consensus size: 7
27475528 ACTAGTTAAT
27475538 CTAAACC
1 CTAAACC
*
27475545 CAAAACC
1 CTAAACC
27475552 CTAAA-C
1 CTAAACC
27475558 CTAAACC
1 CTAAACC
27475565 CTAAAACC
1 CT-AAACC
27475573 CTAAACC
1 CTAAACC
* *
27475580 CTTAACA
1 CTAAACC
27475587 C-ATAACC
1 CTA-AACC
27475594 TCTAAACC
1 -CTAAACC
*
27475602 TTAAACC
1 CTAAACC
* *
27475609 C-CAACGT
1 CTAAAC-C
*
27475616 TTAAACC
1 CTAAACC
*
27475623 ATAAACC
1 CTAAACC
*
27475630 ATAAACC
1 CTAAACC
* *
27475637 ATAAATC
1 CTAAACC
* *
27475644 ATAACCC
1 CTAAACC
27475651 CTAAACC
1 CTAAACC
*
27475658 CATAATCC
1 C-TAAACC
*
27475666 ATAAACC
1 CTAAACC
*
27475673 TTAAA--
1 CTAAACC
*
27475678 ATAGTAACTC
1 CTA--AAC-C
*
27475688 CTAAACT
1 CTAAACC
*
27475695 TTAAACC
1 CTAAACC
27475702 CTAAACC
1 CTAAACC
* *
27475709 ATATACC
1 CTAAACC
27475716 CTAAACC
1 CTAAACC
27475723 AAAAACCTTA
Statistics
Matches: 132, Mismatches: 33, Indels: 26
0.69 0.17 0.14
Matches are distributed among these distances:
5 2 0.02
6 9 0.07
7 95 0.72
8 23 0.17
9 1 0.01
10 2 0.02
ACGTcount: A:0.45, C:0.34, G:0.01, T:0.20
Consensus pattern (7 bp):
CTAAACC
Done.