Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_116 ID=scaffold_116-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12922
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.33

Warning! 453 characters in sequence are not A, C, G, or T


Found at i:12143 original size:37 final size:37

Alignment explanation


    Indices: 12076--12193  Score: 157
    Period size: 37  Copynumber: 3.2  Consensus size: 37

      12066 NNNNATTCGG

                       *                         
      12076 TTATGAATATAGCTTTCTTGTTAGTATTCTCATTCTA
          1 TTATGAATATACCTTTCTTGTTAGTATTCTCATTCTA

              *    *                  *           
      12113 TTTTGAACATACCTTTCTTGCTT-GTTTTCTCATTCTA
          1 TTATGAATATACCTTTCTTG-TTAGTATTCTCATTCTA

                                  *        *     
      12150 TTATGAATATACCTTTCTTGTTCGTATTCTCGTTCTA
          1 TTATGAATATACCTTTCTTGTTAGTATTCTCATTCTA

                   
      12187 TTGATGA
          1 TT-ATGA

      12194 TTAATGTTGC


Statistics
Matches: 70,  Mismatches: 8, Indels: 5
        0.84            0.10        0.06

Matches are distributed among these distances:
  36    2  0.03
  37   62  0.89
  38    6  0.09

ACGTcount: A:0.20, C:0.17, G:0.11, T:0.52


Consensus pattern (37 bp):   
TTATGAATATACCTTTCTTGTTAGTATTCTCATTCTA
Done.