Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 ID=Chr12-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35429946
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 509281 characters in sequence are not A, C, G, or T
File 118 of 120
Found at i:34490701 original size:33 final size:33
Alignment explanation
Indices: 34490612--34490781 Score: 108
Period size: 33 Copynumber: 4.8 Consensus size: 33
34490602 GATAAGGCAA
* * * *
34490612 TTTTGAAAACACGAAGATTTTTTAAATCACCTGACT
1 TTTTGAAAACACGAA-AATTTTTGAA--ACCGGAAT
* *
34490648 TTTTGGAAACGCGAAAATTTTTGAAACCGGAAT
1 TTTTGAAAACACGAAAATTTTTGAAACCGGAAT
* *
34490681 TTTTGAAAACACGAATATTTTTGAAAAACACGAGAAAAAC
1 TTTTGAAAACACGAAAATTTTTG--AAAC-CG-G---AAT
* *
34490721 TTTTGAAGATACGAAAA-TTTTGAAACACGGGAATT
1 TTTTGAAAACACGAAAATTTTTGAAAC-C-GGAA-T
*
34490756 TTTTCGAAAACACGAAATTTTTTGAA
1 TTTT-GAAAACACGAAAATTTTTGAA
34490782 TATTTTTTAG
Statistics
Matches: 106, Mismatches: 17, Indels: 21
0.74 0.12 0.15
Matches are distributed among these distances:
33 26 0.25
34 2 0.02
35 16 0.15
36 25 0.24
37 15 0.14
38 1 0.01
39 5 0.05
40 16 0.15
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (33 bp):
TTTTGAAAACACGAAAATTTTTGAAACCGGAAT
Found at i:34490704 original size:18 final size:17
Alignment explanation
Indices: 34490612--34490777 Score: 88
Period size: 18 Copynumber: 9.2 Consensus size: 17
34490602 GATAAGGCAA
34490612 TTTTGAAAACACGAAGAT
1 TTTTGAAAACACGAA-AT
* * *
34490630 TTTTTAAATCACCTG-ACT
1 TTTTGAAAACA-C-GAAAT
* *
34490648 TTTTGGAAACGCGAAAAT
1 TTTTGAAAACACG-AAAT
*
34490666 TTTTG-AAAC-CGGAAT
1 TTTTGAAAACACGAAAT
34490681 TTTTGAAAACACGAATAT
1 TTTTGAAAACACGAA-AT
*
34490699 TTTTGAAAAACACGAGAAAAAC
1 TTTTG-AAAACAC--G--AAAT
* * *
34490721 TTTTGAAGATACGAAAA
1 TTTTGAAAACACGAAAT
*
34490738 TTTTG-AAACACGGGAATT
1 TTTTGAAAACAC--GAAAT
34490756 TTTTCGAAAACACGAAAT
1 TTTT-GAAAACACGAAAT
34490774 TTTT
1 TTTT
34490778 TGAATATTTT
Statistics
Matches: 113, Mismatches: 19, Indels: 32
0.69 0.12 0.20
Matches are distributed among these distances:
15 8 0.07
16 11 0.10
17 16 0.14
18 46 0.41
19 11 0.10
20 7 0.06
21 6 0.05
22 6 0.05
23 2 0.02
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (17 bp):
TTTTGAAAACACGAAAT
Found at i:34490916 original size:5 final size:5
Alignment explanation
Indices: 34490906--34490938 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
34490896 AAATTATTTA
34490906 AAATT AAATT AAATT AAATT AAATT AAATT AAA
1 AAATT AAATT AAATT AAATT AAATT AAATT AAA
34490939 AATATAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (5 bp):
AAATT
Found at i:34491120 original size:10 final size:10
Alignment explanation
Indices: 34491102--34491175 Score: 75
Period size: 10 Copynumber: 7.5 Consensus size: 10
34491092 TCCCTTTTTC
34491102 TTTTT-TTCT
1 TTTTTCTTCT
34491111 TTTTTCTTCT
1 TTTTTCTTCT
*
34491121 CTTTTC-TCT
1 TTTTTCTTCT
*
34491130 TTTTTTTTCT
1 TTTTTCTTCT
34491140 TTTTT-TCTCT
1 TTTTTCT-TCT
34491150 TTCTTTC-TCT
1 TT-TTTCTTCT
34491160 TTTTTCTTTCT
1 TTTTTC-TTCT
34491171 TTTTT
1 TTTTT
34491176 GGCCTGTTGG
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
9 17 0.31
10 27 0.49
11 11 0.20
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTTTCTTCT
Found at i:34491141 original size:37 final size:38
Alignment explanation
Indices: 34491096--34491175 Score: 119
Period size: 37 Copynumber: 2.1 Consensus size: 38
34491086 ATGAACTCCC
*
34491096 TTTTTCTTTTTTTCT-TTTTTCTTCTCTTTTCTCTTT-T
1 TTTTTCTTTTTTTCTCTTTCT-TTCTCTTTTCTCTTTCT
*
34491133 TTTTTCTTTTTTTCTCTTTCTTTCTCTTTTTTCTTTCT
1 TTTTTCTTTTTTTCTCTTTCTTTCTCTTTTCTCTTTCT
34491171 TTTTT
1 TTTTT
34491176 GGCCTGTTGG
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
37 29 0.74
38 10 0.26
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (38 bp):
TTTTTCTTTTTTTCTCTTTCTTTCTCTTTTCTCTTTCT
Found at i:34491142 original size:27 final size:27
Alignment explanation
Indices: 34491095--34491173 Score: 90
Period size: 27 Copynumber: 2.8 Consensus size: 27
34491085 AATGAACTCC
34491095 CTTTT-TCTTTTTTTCTT-TTTTCTTCT
1 CTTTTCTCTTTTTTT-TTCTTTTCTTCT
*
34491121 CTTTTCTCTTTTTTTTTCTTTTTTTCT
1 CTTTTCTCTTTTTTTTTCTTTTCTTCT
34491148 CTTTCTTTCTCTTTTTTCTTTCTTTT
1 C--T-TTTCTCTTTTTT-TTTCTTTT
34491174 TTGGCCTGTT
Statistics
Matches: 46, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
26 7 0.15
27 18 0.39
29 1 0.02
30 12 0.26
31 8 0.17
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (27 bp):
CTTTTCTCTTTTTTTTTCTTTTCTTCT
Found at i:34491144 original size:30 final size:30
Alignment explanation
Indices: 34491102--34491175 Score: 107
Period size: 30 Copynumber: 2.5 Consensus size: 30
34491092 TCCCTTTTTC
34491102 TTTTTTTC-TTTTTTCT-TCTCTTTTCTCTT
1 TTTTTTTCTTTTTTTCTCTCTC-TTTCTCTT
*
34491131 TTTTTTTCTTTTTTTCTCTTTCTTTCTCTT
1 TTTTTTTCTTTTTTTCTCTCTCTTTCTCTT
34491161 TTTTCTTTCTTTTTT
1 TTTT-TTTCTTTTTT
34491176 GGCCTGTTGG
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
29 8 0.20
30 20 0.49
31 13 0.32
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (30 bp):
TTTTTTTCTTTTTTTCTCTCTCTTTCTCTT
Found at i:34494502 original size:29 final size:29
Alignment explanation
Indices: 34494453--34494509 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
34494443 CTCTTTATAC
34494453 ATTTAGAATTTAGCCCCTTTA-TTTTTAT
1 ATTTAGAATTTAGCCCCTTTACTTTTTAT
* **
34494481 ATTTAGGAATTTAGTCTTTTTACTTTTTA
1 ATTTA-GAATTTAGCCCCTTTACTTTTTA
34494510 AATATCAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 5 0.21
29 13 0.54
30 6 0.25
ACGTcount: A:0.25, C:0.11, G:0.09, T:0.56
Consensus pattern (29 bp):
ATTTAGAATTTAGCCCCTTTACTTTTTAT
Found at i:34500997 original size:2 final size:2
Alignment explanation
Indices: 34500990--34501040 Score: 86
Period size: 2 Copynumber: 26.0 Consensus size: 2
34500980 GGTCCTCTGA
34500990 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
34501031 AT AT AA AT AT
1 AT AT AT AT AT
34501041 GCGGCTAAGA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:34504414 original size:5 final size:5
Alignment explanation
Indices: 34504404--34504433 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
34504394 ATTGGGACCC
34504404 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT
34504434 TTCTGCTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
CTTTT
Found at i:34514732 original size:2 final size:2
Alignment explanation
Indices: 34514713--34514768 Score: 82
Period size: 2 Copynumber: 29.0 Consensus size: 2
34514703 TTGACATTAA
34514713 AT AT AT AGT A- AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
34514754 AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT
34514769 GTTAATGCTC
Statistics
Matches: 50, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
1 3 0.06
2 45 0.90
3 2 0.04
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:34519626 original size:2 final size:2
Alignment explanation
Indices: 34519619--34519647 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
34519609 AGCTTAAATT
34519619 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
34519648 CTAAATAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:34521317 original size:2 final size:2
Alignment explanation
Indices: 34521312--34521354 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
34521302 AATTTAAAAA
34521312 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
34521354 A
1 A
34521355 GCCACTAAGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:34523267 original size:16 final size:17
Alignment explanation
Indices: 34523243--34523284 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
34523233 TGTTTTAATC
*
34523243 TTTTAATTTTCTCT-GT
1 TTTTGATTTTCTCTCGT
*
34523259 TTTTGATTTTCTTTCGT
1 TTTTGATTTTCTCTCGT
34523276 TTTTG-TTTT
1 TTTTGATTTT
34523285 AAGTTATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.07, C:0.10, G:0.10, T:0.74
Consensus pattern (17 bp):
TTTTGATTTTCTCTCGT
Found at i:34524111 original size:153 final size:154
Alignment explanation
Indices: 34523817--34524178 Score: 458
Period size: 153 Copynumber: 2.4 Consensus size: 154
34523807 TTTGAAGTTG
* * * * *
34523817 AATTTCGAGTTAAATTCAAATTCATTAGAATTTCAGTTCAACTTGGCTCAATTACGGTCAGAGTA
1 AATTTTGAGTTGAATTCAAATTTATTAGAACTTCAGTTCAACTTGGCTCAATTACGGTCAGAGCA
* ** * *
34523882 GTAAATGTTAGCTAAAACTGAATTTGGAAATTGTAAAAAGCAGTTTGATCTTTATTTTGATTTGA
66 GTAAATGTTAGCTAAAACTGAATTTAGAAATTGTAAAAAGCAGTTTGATCTTTAGGTTGAATCGA
* *
34523947 GCTCGAGTTAAGATTCAAGCTCCA
131 GCTCAAATTAAGATTCAAGCTCCA
* *
34523971 AATTTTGAGTTGAATTCAAATTTATTAGAACTTCAGTTCAACTTGGCTCAATTATGG-C-TAGCA
1 AATTTTGAGTTGAATTCAAATTTATTAGAACTTCAGTTCAACTTGGCTCAATTACGGTCAGAGCA
* ** *
34524034 GTAAATTGTTAGCTAAAACTGAATTTAGAAGTTGTAAAGGGCAGTTTTATCTTTAGGTTGAATCG
66 GTAAA-TGTTAGCTAAAACTGAATTTAGAAATTGTAAAAAGCAGTTTGATCTTTAGGTTGAATCG
* * * **
34524099 AGCTTAAATTAAGTTTCGAGCTTTA
130 AGCTCAAATTAAGATTCAAGCTCCA
* * * *
34524124 AATTTTGAGTTGAATTCAAACTTATTAGAACTTAAGTTCAACTTAGCTCGATTAC
1 AATTTTGAGTTGAATTCAAATTTATTAGAACTTCAGTTCAACTTGGCTCAATTAC
34524179 AGTTTTAGTA
Statistics
Matches: 179, Mismatches: 28, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
152 8 0.04
153 119 0.66
154 52 0.29
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.37
Consensus pattern (154 bp):
AATTTTGAGTTGAATTCAAATTTATTAGAACTTCAGTTCAACTTGGCTCAATTACGGTCAGAGCA
GTAAATGTTAGCTAAAACTGAATTTAGAAATTGTAAAAAGCAGTTTGATCTTTAGGTTGAATCGA
GCTCAAATTAAGATTCAAGCTCCA
Found at i:34527060 original size:7 final size:7
Alignment explanation
Indices: 34527043--34527088 Score: 58
Period size: 7 Copynumber: 6.4 Consensus size: 7
34527033 CCTGAGATAT
34527043 TCCCCCC
1 TCCCCCC
34527050 -CCCCCC
1 TCCCCCC
*
34527056 GCCCCCCC
1 -TCCCCCC
34527064 TTCCCCCC
1 -TCCCCCC
34527072 TCCCCCC
1 TCCCCCC
34527079 TCCCCCC
1 TCCCCCC
34527086 TCC
1 TCC
34527089 ATTTGGGCCA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
6 6 0.17
7 17 0.49
8 12 0.34
ACGTcount: A:0.00, C:0.85, G:0.02, T:0.13
Consensus pattern (7 bp):
TCCCCCC
Found at i:34527060 original size:8 final size:8
Alignment explanation
Indices: 34527044--34527085 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
34527034 CTGAGATATT
34527044 CCCCC-CC
1 CCCCCTCC
*
34527051 CCCCCGCC
1 CCCCCTCC
*
34527059 CCCCCTTC
1 CCCCCTCC
34527067 CCCCCT-C
1 CCCCCTCC
34527074 CCCCCTCC
1 CCCCCTCC
34527082 CCCC
1 CCCC
34527086 TCCATTTGGG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
7 12 0.39
8 19 0.61
ACGTcount: A:0.00, C:0.88, G:0.02, T:0.10
Consensus pattern (8 bp):
CCCCCTCC
Found at i:34527070 original size:22 final size:23
Alignment explanation
Indices: 34527042--34527085 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
34527032 ACCTGAGATA
34527042 TTCCCCCC-CCCCCCGCCCCCCC
1 TTCCCCCCTCCCCCCGCCCCCCC
*
34527064 TTCCCCCCTCCCCCCTCCCCCC
1 TTCCCCCCTCCCCCCGCCCCCC
34527086 TCCATTTGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.00, C:0.84, G:0.02, T:0.14
Consensus pattern (23 bp):
TTCCCCCCTCCCCCCGCCCCCCC
Found at i:34527833 original size:5 final size:5
Alignment explanation
Indices: 34527819--34527858 Score: 55
Period size: 5 Copynumber: 7.8 Consensus size: 5
34527809 TTCTTTTTTT
34527819 AAAA- AAAAG AAAAG AAAAG AAAAG AAAAAG AGAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG -AAAAG A-AAAG AAAA
34527859 TTCATTATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.12
5 19 0.58
6 10 0.30
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:34528545 original size:31 final size:30
Alignment explanation
Indices: 34528507--34528591 Score: 82
Period size: 31 Copynumber: 2.8 Consensus size: 30
34528497 TGAGAAGCTT
* *
34528507 TTATTTGACCATTTTCAAAAAGGTTTGGTCC
1 TTATTTGACCATTTT-AAAAAGGTTAGATCC
* * *
34528538 TTATTTGAGCACTTTTATAAATGTTAGATCC
1 TTATTTGACCA-TTTTAAAAAGGTTAGATCC
* *
34528569 TTATATGACCATTTT-GAAAGGTT
1 TTATTTGACCATTTTAAAAAGGTT
34528592 TACGAAAAGG
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
29 6 0.14
30 4 0.09
31 30 0.68
32 4 0.09
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (30 bp):
TTATTTGACCATTTTAAAAAGGTTAGATCC
Found at i:34531286 original size:18 final size:19
Alignment explanation
Indices: 34531265--34531303 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
34531255 ATTTTCAACG
34531265 TAAAATT-AA-ATAAATAAT
1 TAAAATTGAATATAAA-AAT
34531283 TAAAATTGAATATAAAAAT
1 TAAAATTGAATATAAAAAT
34531302 TA
1 TA
34531304 CACTAATGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.37
19 7 0.37
20 5 0.26
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
TAAAATTGAATATAAAAAT
Found at i:34532778 original size:22 final size:22
Alignment explanation
Indices: 34532733--34532781 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
34532723 ATTATCCATA
*
34532733 ATATTACATTTATTTCTGTTAG
1 ATATTACATTTATTTCTGTAAG
*
34532755 ATATTACTTTTATTT-TGATAAG
1 ATATTACATTTATTTCTG-TAAG
34532777 ATATT
1 ATATT
34532782 TTATTAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.31, C:0.06, G:0.08, T:0.55
Consensus pattern (22 bp):
ATATTACATTTATTTCTGTAAG
Found at i:34536753 original size:29 final size:29
Alignment explanation
Indices: 34536710--34536765 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
34536700 ATAGGGACTC
*
34536710 GATCAAATTAGTCCCTCAACTATTAAATG
1 GATCAAATTACTCCCTCAACTATTAAATG
* **
34536739 GATCAATTTACTCCCTGTACTATTAAA
1 GATCAAATTACTCCCTCAACTATTAAA
34536766 AAGATTCAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (29 bp):
GATCAAATTACTCCCTCAACTATTAAATG
Found at i:34539961 original size:21 final size:22
Alignment explanation
Indices: 34539906--34539961 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 22
34539896 AAATAGACTT
34539906 AATATTAATTTTGCTAAATAGTA
1 AATATTAATTTT-CTAAATAGTA
* *
34539929 GATGA-T-ATTTTTTAAATAGTA
1 AAT-ATTAATTTTCTAAATAGTA
34539950 AATATTAATTTT
1 AATATTAATTTT
34539962 ATTCCAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
20 1 0.04
21 12 0.44
22 10 0.37
23 3 0.11
24 1 0.04
ACGTcount: A:0.41, C:0.02, G:0.09, T:0.48
Consensus pattern (22 bp):
AATATTAATTTTCTAAATAGTA
Found at i:34545357 original size:31 final size:31
Alignment explanation
Indices: 34545319--34545395 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
34545309 AATATAACAT
* * *
34545319 TTGGTACTTGAACTTGATATTTTTTCTTAAA
1 TTGGTACTTAAACTTGACACTTTTTCTTAAA
*
34545350 TTGGTACTTAAATTTGACACTTTTTCTTAAA
1 TTGGTACTTAAACTTGACACTTTTTCTTAAA
34545381 TTGGTACTTAAACTT
1 TTGGTACTTAAACTT
34545396 ACTTTTTGAG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.49
Consensus pattern (31 bp):
TTGGTACTTAAACTTGACACTTTTTCTTAAA
Found at i:34545449 original size:31 final size:31
Alignment explanation
Indices: 34545317--34545451 Score: 107
Period size: 31 Copynumber: 4.3 Consensus size: 31
34545307 TTAATATAAC
* *
34545317 ATTTGGTACTTGAACTTGA-TATTTTTTCTTA
1 ATTTGGTACTTAAACTTGACT-CTTTTTCTTA
* * *
34545348 AATTGGTACTTAAATTTGACACTTTTTCTTA
1 ATTTGGTACTTAAACTTGACTCTTTTTCTTA
* *
34545379 AATTGGTACTTAAACTT-ACT-TTTTGAGGATC-CA
1 ATTTGGTACTTAAACTTGACTCTTTT-----TCTTA
* *
34545412 ATTTGGTACCTGAACTTGACTCTTTTTCTTA
1 ATTTGGTACTTAAACTTGACTCTTTTTCTTA
34545443 ATTTGGTAC
1 ATTTGGTAC
34545452 ATAATCTTTT
Statistics
Matches: 83, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
29 4 0.05
30 4 0.05
31 51 0.61
33 15 0.18
34 5 0.06
35 4 0.05
ACGTcount: A:0.25, C:0.14, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTTGGTACTTAAACTTGACTCTTTTTCTTA
Found at i:34548021 original size:27 final size:30
Alignment explanation
Indices: 34547991--34548051 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 30
34547981 ACAATGAGAA
34547991 ATTTAAAGAA-ATAT-ATAA-AAATTACAT
1 ATTTAAAGAATATATAATAACAAATTACAT
* *
34548018 ATTTTTAAGAATATATAATAACAAATTTCAT
1 A-TTTAAAGAATATATAATAACAAATTACAT
34548049 ATT
1 ATT
34548052 AATATTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
27 1 0.04
28 8 0.29
29 4 0.14
30 6 0.21
31 9 0.32
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.39
Consensus pattern (30 bp):
ATTTAAAGAATATATAATAACAAATTACAT
Found at i:34551359 original size:11 final size:11
Alignment explanation
Indices: 34551345--34551370 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
34551335 TATTTTTTAT
34551345 TTTTAAAATAC
1 TTTTAAAATAC
34551356 TTTTAAAATAC
1 TTTTAAAATAC
34551367 TTTT
1 TTTT
34551371 TTTTTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:34551748 original size:30 final size:32
Alignment explanation
Indices: 34551714--34551776 Score: 94
Period size: 30 Copynumber: 2.0 Consensus size: 32
34551704 TTAGCTTTTG
34551714 AGGGCCCAAATTTTTTTTAC-C-AACTTTTAA
1 AGGGCCCAAATTTTTTTTACTCAAACTTTTAA
* *
34551744 AGGGCCTAAATTTTTTTTTCTCAAACTTTTAA
1 AGGGCCCAAATTTTTTTTACTCAAACTTTTAA
34551776 A
1 A
34551777 AAACCTGAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 18 0.62
31 1 0.03
32 10 0.34
ACGTcount: A:0.30, C:0.17, G:0.10, T:0.43
Consensus pattern (32 bp):
AGGGCCCAAATTTTTTTTACTCAAACTTTTAA
Found at i:34552657 original size:22 final size:21
Alignment explanation
Indices: 34552632--34552678 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
34552622 TATTAAATTT
*
34552632 TTTAT-AAATTAATATTTATATA
1 TTTATAAAATT-ATAATTATA-A
34552654 TTTATAAAATTATAATTATAA
1 TTTATAAAATTATAATTATAA
34552675 TTTA
1 TTTA
34552679 ATTCTATTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 5 0.22
22 13 0.57
23 5 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TTTATAAAATTATAATTATAA
Found at i:34554937 original size:15 final size:15
Alignment explanation
Indices: 34554919--34554961 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
34554909 TATTTTTATT
34554919 AATTTAAAATTTTAA
1 AATTTAAAATTTTAA
**
34554934 AATTTAAAAAATTAA
1 AATTTAAAATTTTAA
*
34554949 AATAATAAAATTT
1 AAT-TTAAAATTT
34554962 CAATTTTAGA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
AATTTAAAATTTTAA
Found at i:34555374 original size:49 final size:49
Alignment explanation
Indices: 34555317--34555427 Score: 222
Period size: 49 Copynumber: 2.3 Consensus size: 49
34555307 TTGGCCCTAC
34555317 TTAGATTAATTTTAGAGTTAGACCTATCATATCATCTATTTAATCGAAT
1 TTAGATTAATTTTAGAGTTAGACCTATCATATCATCTATTTAATCGAAT
34555366 TTAGATTAATTTTAGAGTTAGACCTATCATATCATCTATTTAATCGAAT
1 TTAGATTAATTTTAGAGTTAGACCTATCATATCATCTATTTAATCGAAT
34555415 TTAGATTAATTTT
1 TTAGATTAATTTT
34555428 CTAAAGTTGA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 62 1.00
ACGTcount: A:0.34, C:0.11, G:0.10, T:0.45
Consensus pattern (49 bp):
TTAGATTAATTTTAGAGTTAGACCTATCATATCATCTATTTAATCGAAT
Found at i:34563201 original size:85 final size:83
Alignment explanation
Indices: 34563067--34563234 Score: 309
Period size: 85 Copynumber: 2.0 Consensus size: 83
34563057 TAAAAAAATT
34563067 ATATAGATTTAATTTGAAGAAAGACTTATGCTAGGTGATAATCTTTTTTTTTTAATATGTAAATT
1 ATATAGATTTAATTTGAAGAAAGACTTATGCTAGGTGATAATC--TTTTTTTTAATATGTAAATT
*
34563132 AAGTAAAATATATTATAAAA
64 AAGTAAAAAATATTATAAAA
34563152 ATATAGATTTAATTTGAAGAAAGACTTATGCTAGGTGATAATCTTTTTTTTAATATGTAAATTAA
1 ATATAGATTTAATTTGAAGAAAGACTTATGCTAGGTGATAATCTTTTTTTTAATATGTAAATTAA
34563217 GTAAAAAATATTATAAAA
66 GTAAAAAATATTATAAAA
34563235 TTTATAATAT
Statistics
Matches: 82, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
83 39 0.48
85 43 0.52
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.41
Consensus pattern (83 bp):
ATATAGATTTAATTTGAAGAAAGACTTATGCTAGGTGATAATCTTTTTTTTAATATGTAAATTAA
GTAAAAAATATTATAAAA
Found at i:34563253 original size:16 final size:17
Alignment explanation
Indices: 34563223--34563257 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
34563213 TTAAGTAAAA
34563223 AATATTATAAAATTTAT
1 AATATTATAAAATTTAT
*
34563240 AATA-TATAATATTTAT
1 AATATTATAAAATTTAT
34563256 AA
1 AA
34563258 AAAGGGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
AATATTATAAAATTTAT
Found at i:34563898 original size:48 final size:48
Alignment explanation
Indices: 34563827--34563923 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
34563817 AATATTAACT
34563827 ATAATTATTAATTTTTTTAAATTGTTGGTCAAGTTAACATATAATGGA
1 ATAATTATTAATTTTTTTAAATTGTTGGTCAAGTTAACATATAATGGA
34563875 ATAATTATTAATTTTTTTAAATTGTTGGTCAAGTTAACATATAATGGA
1 ATAATTATTAATTTTTTTAAATTGTTGGTCAAGTTAACATATAATGGA
34563923 A
1 A
34563924 AATGTTTTTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.38, C:0.04, G:0.12, T:0.45
Consensus pattern (48 bp):
ATAATTATTAATTTTTTTAAATTGTTGGTCAAGTTAACATATAATGGA
Found at i:34577170 original size:20 final size:22
Alignment explanation
Indices: 34577141--34577186 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
34577131 GCTCATTTGA
*
34577141 TTATTTAAA-TAA-AAATATTT
1 TTATTAAAATTAATAAATATTT
*
34577161 TTATTAAAATTAATATATATTT
1 TTATTAAAATTAATAAATATTT
34577183 TTAT
1 TTAT
34577187 AATTAAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 8 0.36
21 3 0.14
22 11 0.50
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
TTATTAAAATTAATAAATATTT
Found at i:34587182 original size:30 final size:30
Alignment explanation
Indices: 34587144--34587295 Score: 175
Period size: 30 Copynumber: 5.1 Consensus size: 30
34587134 TAAATTTTTT
*
34587144 TTACATTTTGACCTCTAAACTTTTTTAAAA
1 TTACATTTTGACCTCTAAACTTTTTCAAAA
* *
34587174 TTATATTTTGACCTCTAAAATTTTTCAAAA
1 TTACATTTTGACCTCTAAACTTTTTCAAAA
* * *
34587204 TTACATTTTAACCCCTAAACTTTTT-TAAA
1 TTACATTTTGACCTCTAAACTTTTTCAAAA
* *
34587233 TTACATTTTGACC-CTTAAAGTTTCTCAAAA
1 TTACATTTTGACCTC-TAAACTTTTTCAAAA
* *
34587263 TTACATTTTGACCT-TAAAATTGTCTCAAAA
1 TTACATTTTGACCTCTAAACTT-TTTCAAAA
34587293 TTA
1 TTA
34587296 TGTTTCGACA
Statistics
Matches: 105, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
28 1 0.01
29 29 0.28
30 75 0.71
ACGTcount: A:0.35, C:0.17, G:0.04, T:0.44
Consensus pattern (30 bp):
TTACATTTTGACCTCTAAACTTTTTCAAAA
Found at i:34587261 original size:59 final size:60
Alignment explanation
Indices: 34587144--34587271 Score: 188
Period size: 59 Copynumber: 2.1 Consensus size: 60
34587134 TAAATTTTTT
* * * *
34587144 TTACATTTTGACCTCTAAACTTTTTTAAAATTATATTTTGACCTCTAAAATTTTTCAAAA
1 TTACATTTTAACCCCTAAACTTTTTTAAAATTACATTTTGACCTCTAAAATTTCTCAAAA
*
34587204 TTACATTTTAACCCCTAAACTTTTTT-AAATTACATTTTGACC-CTTAAAGTTTCTCAAAA
1 TTACATTTTAACCCCTAAACTTTTTTAAAATTACATTTTGACCTC-TAAAATTTCTCAAAA
34587263 TTACATTTT
1 TTACATTTT
34587272 GACCTTAAAA
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
58 1 0.02
59 37 0.60
60 24 0.39
ACGTcount: A:0.34, C:0.17, G:0.03, T:0.46
Consensus pattern (60 bp):
TTACATTTTAACCCCTAAACTTTTTTAAAATTACATTTTGACCTCTAAAATTTCTCAAAA
Found at i:34587685 original size:10 final size:9
Alignment explanation
Indices: 34587638--34587679 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
34587628 AGTTTCCAAG
34587638 AAAAAGA-A
1 AAAAAGAGA
34587646 AAAGAAGA-A
1 AAA-AAGAGA
*
34587655 AAAAAAAGA
1 AAAAAGAGA
34587664 AAAAAGAGA
1 AAAAAGAGA
34587673 AAAAAGA
1 AAAAAGA
34587680 TTAAAATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
8 6 0.20
9 24 0.80
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (9 bp):
AAAAAGAGA
Found at i:34587685 original size:19 final size:20
Alignment explanation
Indices: 34587638--34587677 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
34587628 AGTTTCCAAG
34587638 AAAAAG-AAAAAGAAGAAAA
1 AAAAAGAAAAAAGAAGAAAA
34587657 AAAAAGAAAAAAG-AGAAAA
1 AAAAAGAAAAAAGAAGAAAA
34587676 AA
1 AA
34587678 GATTAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (20 bp):
AAAAAGAAAAAAGAAGAAAA
Found at i:34587830 original size:28 final size:30
Alignment explanation
Indices: 34587786--34587842 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 30
34587776 CAGGCCCCCC
*
34587786 AGAAAAACAAAACAGCA-AAAAA-AGAAGA
1 AGAAAAACAAAAAAGCAGAAAAATAGAAGA
34587814 AGAAAAA-AAACAAAGCAGAAAAATAGAAG
1 AGAAAAACAAA-AAAGCAGAAAAATAGAAG
34587843 CAGGCCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 3 0.12
28 12 0.48
29 5 0.20
30 5 0.20
ACGTcount: A:0.74, C:0.09, G:0.16, T:0.02
Consensus pattern (30 bp):
AGAAAAACAAAAAAGCAGAAAAATAGAAGA
Found at i:34587835 original size:15 final size:16
Alignment explanation
Indices: 34587788--34587836 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
34587778 GGCCCCCCAG
* *
34587788 AAAAACAAAACAGCAA
1 AAAAACAAAGCAGAAA
* *
34587804 AAAAA-GAAGAAGAAA
1 AAAAACAAAGCAGAAA
34587819 AAAAACAAAGCAGAAA
1 AAAAACAAAGCAGAAA
34587835 AA
1 AA
34587837 TAGAAGCAGG
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
15 11 0.42
16 15 0.58
ACGTcount: A:0.78, C:0.10, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAACAAAGCAGAAA
Found at i:34587988 original size:13 final size:13
Alignment explanation
Indices: 34587970--34588016 Score: 64
Period size: 12 Copynumber: 3.8 Consensus size: 13
34587960 GCAGCAGGCC
34587970 AAAAAAAGAAGAG
1 AAAAAAAGAAGAG
34587983 -AAAAAAGAGAGAG
1 AAAAAAAGA-AGAG
34587996 AAAAAAA-AA-AG
1 AAAAAAAGAAGAG
34588007 AAAAAAAGAA
1 AAAAAAAGAA
34588017 AAAGCCCGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
11 9 0.29
12 11 0.35
13 5 0.16
14 6 0.19
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (13 bp):
AAAAAAAGAAGAG
Found at i:34588008 original size:11 final size:12
Alignment explanation
Indices: 34587970--34588017 Score: 62
Period size: 13 Copynumber: 3.9 Consensus size: 12
34587960 GCAGCAGGCC
34587970 AAAAAAAGAAGAG
1 AAAAAAAGAA-AG
*
34587983 AAAAAAGAGAGAG
1 AAAAAA-AGAAAG
34587996 AAAAAAA-AAAG
1 AAAAAAAGAAAG
34588007 AAAAAAAGAAA
1 AAAAAAAGAAA
34588018 AAGCCCGAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 10 0.32
12 4 0.13
13 14 0.45
14 3 0.10
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (12 bp):
AAAAAAAGAAAG
Found at i:34588482 original size:18 final size:18
Alignment explanation
Indices: 34588459--34588608 Score: 115
Period size: 18 Copynumber: 8.1 Consensus size: 18
34588449 ATTTATCAAT
*
34588459 ATTTTCGTGTTTTCAACA
1 ATTTTCGTGTTTTCAAAA
34588477 ATTTTCGTGTTTTCAAAAAAAATA
1 ATTTTCGTGTTTTC-----AAA-A
**
34588501 ATTTTCGTGTTTAAAAAA
1 ATTTTCGTGTTTTCAAAA
* *
34588519 ATTCTCGTGTTTT-AAAG
1 ATTTTCGTGTTTTCAAAA
34588536 ATTTTCGTGTTTTCAAAA
1 ATTTTCGTGTTTTCAAAA
* * *
34588554 ATTTTCGT-ATTTCTAAG
1 ATTTTCGTGTTTTCAAAA
* * *
34588571 ATTCTCGTATTTCCCAAAA
1 ATTTTCGTGTTT-TCAAAA
*
34588590 ATTTCCGTGTTTTCAAAA
1 ATTTTCGTGTTTTCAAAA
34588608 A
1 A
34588609 AAATTCCCGT
Statistics
Matches: 103, Mismatches: 20, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
17 28 0.27
18 45 0.44
19 15 0.15
23 2 0.02
24 13 0.13
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (18 bp):
ATTTTCGTGTTTTCAAAA
Found at i:34588504 original size:24 final size:22
Alignment explanation
Indices: 34588476--34588519 Score: 70
Period size: 24 Copynumber: 1.9 Consensus size: 22
34588466 TGTTTTCAAC
34588476 AATTTTCGTGTTTTCAAAAAAAAT
1 AATTTTCGTG-TTT-AAAAAAAAT
34588500 AATTTTCGTGTTTAAAAAAA
1 AATTTTCGTGTTTAAAAAAA
34588520 TTCTCGTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 3 0.15
24 10 0.50
ACGTcount: A:0.43, C:0.07, G:0.09, T:0.41
Consensus pattern (22 bp):
AATTTTCGTGTTTAAAAAAAAT
Found at i:34588547 original size:35 final size:35
Alignment explanation
Indices: 34588501--34588578 Score: 95
Period size: 35 Copynumber: 2.2 Consensus size: 35
34588491 AAAAAAAATA
*
34588501 ATTTTCGTGTTTAAAAAAATTCTCGTGTTT-TAAAG
1 ATTTTCGTGTTTAAAAAAATTCTCGTATTTCT-AAG
** *
34588536 ATTTTCGTGTTTTCAAAAATTTTCGTATTTCTAAG
1 ATTTTCGTGTTTAAAAAAATTCTCGTATTTCTAAG
*
34588571 ATTCTCGT
1 ATTTTCGT
34588579 ATTTCCCAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 36 0.97
36 1 0.03
ACGTcount: A:0.27, C:0.12, G:0.13, T:0.49
Consensus pattern (35 bp):
ATTTTCGTGTTTAAAAAAATTCTCGTATTTCTAAG
Found at i:34589468 original size:13 final size:14
Alignment explanation
Indices: 34589435--34589462 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
34589425 AATATCTTTC
34589435 AAAATAAATTTTAA
1 AAAATAAATTTTAA
34589449 AAAATAAATTTTAA
1 AAAATAAATTTTAA
34589463 GCATAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AAAATAAATTTTAA
Found at i:34590382 original size:20 final size:21
Alignment explanation
Indices: 34590344--34590382 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
34590334 ATCTCGATTC
* *
34590344 TTAAAAAATTGAAATAAAACT
1 TTAAAAAATTAAAAAAAAACT
34590365 TTAAAAAA-TAAAAAAAAA
1 TTAAAAAATTAAAAAAAAA
34590383 TAAATATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (21 bp):
TTAAAAAATTAAAAAAAAACT
Found at i:34591004 original size:16 final size:15
Alignment explanation
Indices: 34590982--34591026 Score: 63
Period size: 17 Copynumber: 2.9 Consensus size: 15
34590972 AATAAAAAAA
34590982 TAATAAATTTTTTTT
1 TAATAAATTTTTTTT
*
34590997 TGAATAAAATATTTTTT
1 T-AAT-AAATTTTTTTT
34591014 TAATAAATTTTTT
1 TAATAAATTTTTT
34591027 AAAAAATACA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 9 0.35
16 6 0.23
17 11 0.42
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (15 bp):
TAATAAATTTTTTTT
Found at i:34591103 original size:23 final size:23
Alignment explanation
Indices: 34591075--34591120 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
34591065 GCGCCTACCT
34591075 GGTGCCTCATAAAGAGGCGCCAA
1 GGTGCCTCATAAAGAGGCGCCAA
* **
34591098 GGTGCCTTATAGGGAGGCGCCAA
1 GGTGCCTCATAAAGAGGCGCCAA
34591121 TGAAATTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.26, C:0.24, G:0.35, T:0.15
Consensus pattern (23 bp):
GGTGCCTCATAAAGAGGCGCCAA
Found at i:34591292 original size:8 final size:8
Alignment explanation
Indices: 34591279--34591350 Score: 54
Period size: 8 Copynumber: 8.4 Consensus size: 8
34591269 CATACAAAAA
34591279 ATTACAAT
1 ATTACAAT
34591287 ATTACAAT
1 ATTACAAT
* * *
34591295 ATATCCCGAC
1 AT-T-ACAAT
34591305 ATTACAAT
1 ATTACAAT
*
34591313 ATTCATACAAA
1 A-T--TACAAT
*
34591324 ATTATAAT
1 ATTACAAT
34591332 ATTACAAT
1 ATTACAAT
34591340 ATTACAAT
1 ATTACAAT
34591348 ATT
1 ATT
34591351 CATACAAAAA
Statistics
Matches: 49, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
8 35 0.71
9 3 0.06
10 5 0.10
11 6 0.12
ACGTcount: A:0.47, C:0.15, G:0.01, T:0.36
Consensus pattern (8 bp):
ATTACAAT
Found at i:34591341 original size:27 final size:27
Alignment explanation
Indices: 34591305--34591408 Score: 115
Period size: 27 Copynumber: 3.7 Consensus size: 27
34591295 ATATCCCGAC
34591305 ATTACAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAATTATAAT
*
34591332 ATTACAATATTACAATATTCATACAA--A-AAA
1 ATTACAATATT-C-ATA--CA-A-AATTATAAT
*
34591362 ATTGCAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAATTATAAT
34591389 ATTACAATATTCATACAAAA
1 ATTACAATATTCATACAAAA
34591409 AATTAACAAT
Statistics
Matches: 64, Mismatches: 4, Indels: 18
0.74 0.05 0.21
Matches are distributed among these distances:
24 2 0.03
25 1 0.02
26 3 0.05
27 32 0.50
28 4 0.06
29 4 0.06
30 12 0.19
31 3 0.05
32 1 0.02
33 2 0.03
ACGTcount: A:0.53, C:0.12, G:0.01, T:0.34
Consensus pattern (27 bp):
ATTACAATATTCATACAAAATTATAAT
Found at i:34591370 original size:22 final size:22
Alignment explanation
Indices: 34591340--34591426 Score: 104
Period size: 22 Copynumber: 3.7 Consensus size: 22
34591330 ATATTACAAT
34591340 ATTACAATATTCATACAAAAAA
1 ATTACAATATTCATACAAAAAA
*
34591362 ATTGCAATATTCATACAAAATTATAA
1 ATTACAATATTCATAC-AAA--A-AA
34591388 TATTACAATATTCATAC-AAAAA
1 -ATTACAATATTCATACAAAAAA
34591410 ATTAACAATATTCATAC
1 ATT-ACAATATTCATAC
34591427 TAAATATAGA
Statistics
Matches: 57, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
21 3 0.05
22 30 0.53
23 4 0.07
25 3 0.05
26 2 0.04
27 15 0.26
ACGTcount: A:0.53, C:0.14, G:0.01, T:0.32
Consensus pattern (22 bp):
ATTACAATATTCATACAAAAAA
Found at i:34591402 original size:49 final size:49
Alignment explanation
Indices: 34591332--34591431 Score: 157
Period size: 49 Copynumber: 2.0 Consensus size: 49
34591322 AAATTATAAT
*
34591332 ATTACAATATTACAATATTCATACAAAAAAATT-GCAATATTCATACAAA
1 ATTACAATATTACAATATTCATAC-AAAAAATTAACAATATTCATACAAA
* *
34591381 ATTATAATATTACAATATTCATACAAAAAATTAACAATATTCATACTAA
1 ATTACAATATTACAATATTCATACAAAAAATTAACAATATTCATACAAA
34591430 AT
1 AT
34591432 ATAGATAATA
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
48 8 0.17
49 39 0.83
ACGTcount: A:0.53, C:0.13, G:0.01, T:0.33
Consensus pattern (49 bp):
ATTACAATATTACAATATTCATACAAAAAATTAACAATATTCATACAAA
Found at i:34591981 original size:19 final size:19
Alignment explanation
Indices: 34591957--34591997 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
34591947 ACAAACACAA
*
34591957 AAATTTATAACATAATCCT
1 AAATTTATAACATAACCCT
34591976 AAATTTATAACATAACCCT
1 AAATTTATAACATAACCCT
34591995 AAA
1 AAA
34591998 CCCGGAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (19 bp):
AAATTTATAACATAACCCT
Found at i:34592052 original size:27 final size:27
Alignment explanation
Indices: 34592014--34592116 Score: 179
Period size: 27 Copynumber: 3.8 Consensus size: 27
34592004 AAAATCACAG
34592014 CATTGGCGCCTCCCAGATAGGCACCAC
1 CATTGGCGCCTCCCAGATAGGCACCAC
*
34592041 CATTGGAGCCTCCCAGATAGGCACCAC
1 CATTGGCGCCTCCCAGATAGGCACCAC
*
34592068 CATTGGCGCCTCCTAGATAGGCACCAC
1 CATTGGCGCCTCCCAGATAGGCACCAC
*
34592095 CATTGGCGCCTCCCAAATAGGC
1 CATTGGCGCCTCCCAGATAGGC
34592117 GCCAATACTA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.23, C:0.38, G:0.22, T:0.17
Consensus pattern (27 bp):
CATTGGCGCCTCCCAGATAGGCACCAC
Found at i:34598204 original size:25 final size:26
Alignment explanation
Indices: 34598176--34598230 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 26
34598166 TGCCTGGCCC
34598176 AATAAATACCA-AAAAAA-CAAATAAA
1 AATAAA-ACCATAAAAAATCAAATAAA
*
34598201 AATAAAACTATAAAAAATCAAATAAA
1 AATAAAACCATAAAAAATCAAATAAA
34598227 AATA
1 AATA
34598231 GTAAATAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 3 0.11
25 12 0.44
26 12 0.44
ACGTcount: A:0.75, C:0.09, G:0.00, T:0.16
Consensus pattern (26 bp):
AATAAAACCATAAAAAATCAAATAAA
Found at i:34598778 original size:18 final size:18
Alignment explanation
Indices: 34598755--34598790 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
34598745 GTGATTTGAA
34598755 TTTTTTCTTTTTCCTTTC
1 TTTTTTCTTTTTCCTTTC
* *
34598773 TTTTTTGTTTTTTCTTTC
1 TTTTTTCTTTTTCCTTTC
34598791 GGTTCTCTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.81
Consensus pattern (18 bp):
TTTTTTCTTTTTCCTTTC
Found at i:34599515 original size:23 final size:23
Alignment explanation
Indices: 34599489--34599544 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
34599479 TTATAAATTC
34599489 TTTTATTTTATTATATAGTATTA
1 TTTTATTTTATTATATAGTATTA
* *
34599512 TTTTATGTTT-TTGTATATTATTA
1 TTTTAT-TTTATTATATAGTATTA
* *
34599535 CTTAATTTTA
1 TTTTATTTTA
34599545 CAAATATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
22 3 0.11
23 21 0.78
24 3 0.11
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (23 bp):
TTTTATTTTATTATATAGTATTA
Found at i:34610834 original size:31 final size:30
Alignment explanation
Indices: 34610799--34610856 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
34610789 TTTTTTAGTT
34610799 AAATTTAG-CAGTCAATCTTTTAAAAAGAGTA
1 AAATTTAGCCA-TCAA-CTTTTAAAAAGAGTA
* *
34610830 AAATTTGGCCATCCACTTTTAAAAAGA
1 AAATTTAGCCATCAACTTTTAAAAAGA
34610857 ATTTAATTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 12 0.50
31 10 0.42
32 2 0.08
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (30 bp):
AAATTTAGCCATCAACTTTTAAAAAGAGTA
Found at i:34610980 original size:17 final size:17
Alignment explanation
Indices: 34610960--34610992 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
34610950 ATTTGAATTT
*
34610960 TTTTTATAATTTTTAAG
1 TTTTTACAATTTTTAAG
34610977 TTTTTACAATTTTTAA
1 TTTTTACAATTTTTAA
34610993 ATTATTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (17 bp):
TTTTTACAATTTTTAAG
Found at i:34611760 original size:53 final size:54
Alignment explanation
Indices: 34611679--34611787 Score: 184
Period size: 53 Copynumber: 2.0 Consensus size: 54
34611669 ACACACGCAC
*
34611679 AAAAAAATTAGTGCATACCAAGTGTTTGAGTAAATACTCTCAAAAGTATTATTTA
1 AAAAAAAATAGT-CATACCAAGTGTTTGAGTAAATACTCTCAAAAGTATTATTTA
*
34611734 AAAAAAAATAGT-ATACCAAGTGTTTGAGTAAATGCTCTCAAAAGTATTATTTA
1 AAAAAAAATAGTCATACCAAGTGTTTGAGTAAATACTCTCAAAAGTATTATTTA
34611787 A
1 A
34611788 CTCAAGAATA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
53 41 0.79
55 11 0.21
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.32
Consensus pattern (54 bp):
AAAAAAAATAGTCATACCAAGTGTTTGAGTAAATACTCTCAAAAGTATTATTTA
Found at i:34614456 original size:20 final size:19
Alignment explanation
Indices: 34614418--34614466 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
34614408 CGCACTAGCC
*
34614418 TTATTGATATTGTAATTAT
1 TTATTTATATTGTAATTAT
* *
34614437 GTTATTTATATTTTATTTAT
1 -TTATTTATATTGTAATTAT
*
34614457 CTATTTATAT
1 TTATTTATAT
34614467 ATATGTATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.63
Consensus pattern (19 bp):
TTATTTATATTGTAATTAT
Found at i:34617083 original size:19 final size:19
Alignment explanation
Indices: 34617039--34617085 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
34617029 GCTTTTTTCG
* *
34617039 ATAAAAATATATACAAAAT
1 ATAAAAATACATAAAAAAT
*
34617058 -TATAAAATGCATAAAAAAT
1 ATA-AAAATACATAAAAAAT
34617077 ATAAAAATA
1 ATAAAAATA
34617086 TGTATAAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
18 2 0.09
19 18 0.82
20 2 0.09
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (19 bp):
ATAAAAATACATAAAAAAT
Found at i:34624555 original size:15 final size:15
Alignment explanation
Indices: 34624537--34624572 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
34624527 ATAAAAATTT
*
34624537 AAATTTGTAATGCTA
1 AAATTTGTAATGATA
34624552 AAATTTGTAATGATA
1 AAATTTGTAATGATA
34624567 AAATTT
1 AAATTT
34624573 CATTTTTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.44, C:0.03, G:0.11, T:0.42
Consensus pattern (15 bp):
AAATTTGTAATGATA
Found at i:34626831 original size:23 final size:23
Alignment explanation
Indices: 34626804--34626870 Score: 73
Period size: 25 Copynumber: 2.8 Consensus size: 23
34626794 GTGAAGTCAT
34626804 TTTGAGCTTTCCAATCTATTAAA
1 TTTGAGCTTTCCAATCTATTAAA
* *
34626827 TTTGATG-TCTCAACAATCTATTATA
1 TTTGA-GCTTTC--CAATCTATTAAA
*
34626852 TTTGAGCTTTCCAACCTAT
1 TTTGAGCTTTCCAATCTAT
34626871 ATATATTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
23 15 0.42
24 2 0.06
25 19 0.53
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.43
Consensus pattern (23 bp):
TTTGAGCTTTCCAATCTATTAAA
Found at i:34626844 original size:25 final size:25
Alignment explanation
Indices: 34626815--34626896 Score: 85
Period size: 25 Copynumber: 3.1 Consensus size: 25
34626805 TTGAGCTTTC
*
34626815 CAATCTATTAAATTTGATGTCTCAA
1 CAATCTATTATATTTGATGTCTCAA
*
34626840 CAATCTATTATATTTGA-GCTTTCCAA
1 CAATCTATTATATTTGATG-TCT-CAA
*
34626866 CCTATATATATTATATTTGATGTCTCAA
1 -C-A-ATCTATTATATTTGATGTCTCAA
34626894 CAA
1 CAA
34626897 CCCTCGACTC
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
24 1 0.02
25 19 0.40
26 4 0.09
27 2 0.04
28 4 0.09
29 16 0.34
30 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.07, T:0.41
Consensus pattern (25 bp):
CAATCTATTATATTTGATGTCTCAA
Found at i:34631201 original size:28 final size:28
Alignment explanation
Indices: 34631161--34631214 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
34631151 TCTCGTTGTG
*
34631161 ACGTTGTCAAATAGTTTGTCACATCATA
1 ACGTTGTCAAATAGTCTGTCACATCATA
34631189 ACGTTG-CGAAATAGTCTGTCACATCA
1 ACGTTGTC-AAATAGTCTGTCACATCA
34631215 CGAAGTTGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 1 0.04
28 23 0.96
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (28 bp):
ACGTTGTCAAATAGTCTGTCACATCATA
Found at i:34631222 original size:28 final size:28
Alignment explanation
Indices: 34631161--34631223 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 28
34631151 TCTCGTTGTG
* *
34631161 ACGTTGTC-AAATAGTTTGTCACATCATA
1 ACGTTG-CGAAATAGTCTGTCACATCAGA
34631189 ACGTTGCGAAATAGTCTGTCACATCACGA
1 ACGTTGCGAAATAGTCTGTCACATCA-GA
34631218 A-GTTGC
1 ACGTTGC
34631224 AACGCCACTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
27 1 0.03
28 28 0.90
29 2 0.06
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (28 bp):
ACGTTGCGAAATAGTCTGTCACATCAGA
Found at i:34631584 original size:51 final size:55
Alignment explanation
Indices: 34631471--34631589 Score: 147
Period size: 51 Copynumber: 2.2 Consensus size: 55
34631461 AAGTATAAGT
* *
34631471 TAAAGTGTTCAAGGAATGAAATATGCATGCTATGACGCTTTTTGCTATGCTATGC
1 TAAAGTGTTCAAGAAAGGAAATATGCATGCTATGACGCTTTTTGCTATGCTATGC
* * * *
34631526 TAAAGTGTTCAAGAAAGGAATTATGCAT-C-CT-ACGC-TTTTGTTATGCTATGT
1 TAAAGTGTTCAAGAAAGGAAATATGCATGCTATGACGCTTTTTGCTATGCTATGC
*
34631577 TGAAGTGTTCAAG
1 TAAAGTGTTCAAG
34631590 CAATACATTA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
51 26 0.46
52 4 0.07
53 1 0.02
54 1 0.02
55 25 0.44
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.35
Consensus pattern (55 bp):
TAAAGTGTTCAAGAAAGGAAATATGCATGCTATGACGCTTTTTGCTATGCTATGC
Found at i:34639757 original size:19 final size:21
Alignment explanation
Indices: 34639714--34639757 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
34639704 TTTTTTCTAT
* *
34639714 AAAATACATATACAAAATTAT
1 AAAATACATATACAAAATAAA
34639735 AAAATACATA-A-AAAATAAA
1 AAAATACATATACAAAATAAA
34639754 AAAA
1 AAAA
34639758 ATATTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 10 0.48
20 1 0.05
21 10 0.48
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (21 bp):
AAAATACATATACAAAATAAA
Found at i:34649867 original size:21 final size:21
Alignment explanation
Indices: 34649841--34649888 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
34649831 GTCACTCGGG
34649841 CTAAGGCCAGAGTTTTCAAGC
1 CTAAGGCCAGAGTTTTCAAGC
**
34649862 CTAAGGCTGGAGTTTTCAAGC
1 CTAAGGCCAGAGTTTTCAAGC
34649883 CTAAGG
1 CTAAGG
34649889 TTTTAAATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (21 bp):
CTAAGGCCAGAGTTTTCAAGC
Found at i:34651684 original size:32 final size:31
Alignment explanation
Indices: 34651648--34651708 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 31
34651638 ATTTAATTTG
* *
34651648 ACTTTTTTTTAAAGGATTGATGGCTAAATTCA
1 ACTTTTTTTAAAAGG-TTGAAGGCTAAATTCA
34651680 ACTTTTTTTAAAAGGTTGAAGGCTAAATT
1 ACTTTTTTTAAAAGGTTGAAGGCTAAATT
34651709 TTAAGTCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 13 0.48
32 14 0.52
ACGTcount: A:0.33, C:0.08, G:0.16, T:0.43
Consensus pattern (31 bp):
ACTTTTTTTAAAAGGTTGAAGGCTAAATTCA
Found at i:34655322 original size:19 final size:20
Alignment explanation
Indices: 34655286--34655332 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
34655276 AAAATGTATC
*
34655286 TATAAAATACATATACAAAAT
1 TATAAAATACA-ATACAAAAA
34655307 TATAAAATAC-ATACAAAAA
1 TATAAAATACAATACAAAAA
34655326 TATAAAA
1 TATAAAA
34655333 ATATTTATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 15 0.60
21 10 0.40
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.26
Consensus pattern (20 bp):
TATAAAATACAATACAAAAA
Found at i:34655335 original size:20 final size:21
Alignment explanation
Indices: 34655286--34655332 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
34655276 AAAATGTATC
*
34655286 TATAAAATACATATACAAAAT
1 TATAAAATACATACACAAAAT
34655307 TATAAAATACATACA-AAAA-
1 TATAAAATACATACACAAAAT
34655326 TATAAAA
1 TATAAAA
34655333 ATATTTATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 7 0.28
20 4 0.16
21 14 0.56
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.26
Consensus pattern (21 bp):
TATAAAATACATACACAAAAT
Found at i:34655862 original size:65 final size:65
Alignment explanation
Indices: 34655758--34655879 Score: 165
Period size: 65 Copynumber: 1.9 Consensus size: 65
34655748 TACTAACCCG
* * * * *
34655758 CAAATGGATGTTAATTCTTGTGTGGATCTTGGCATACTTTGTGAATTTTTTTATACCCCCCCCCC
1 CAAATGGATGTTAATTATTATGTGGATCTCGGCATACTTTGGGAATATTTTTATACCCCCCCCCC
* *
34655823 CAAATGTATGTTAATTATTATGTGGATC-CGGTTATACTTTGGGAATATTTTTATACC
1 CAAATGGATGTTAATTATTATGTGGATCTCGG-CATACTTTGGGAATATTTTTATACC
34655880 ATTTTCATTG
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
64 2 0.04
65 47 0.96
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.42
Consensus pattern (65 bp):
CAAATGGATGTTAATTATTATGTGGATCTCGGCATACTTTGGGAATATTTTTATACCCCCCCCCC
Found at i:34670141 original size:29 final size:29
Alignment explanation
Indices: 34670109--34670171 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
34670099 ATTTAGGACC
* *
34670109 AAATTTAGCTCAAGAAAAGAATAAGGGTT
1 AAATTTAGCTCAAAAAAAGAATAAGGGCT
34670138 AAATTTAGCTCAAAAAAAGAATAAGGGCT
1 AAATTTAGCTCAAAAAAAGAATAAGGGCT
34670167 AAATT
1 AAATT
34670172 GATAAAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.51, C:0.08, G:0.17, T:0.24
Consensus pattern (29 bp):
AAATTTAGCTCAAAAAAAGAATAAGGGCT
Found at i:34670249 original size:28 final size:29
Alignment explanation
Indices: 34670195--34670253 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 29
34670185 TATACATAAA
*
34670195 TACTAAGGGCTAATTTTTTTTATTATGCC
1 TACTAAGGGCTAATTTTTGTTATTATGCC
34670224 TACTAAGGGCTAA-TTTTGTTATTATGCC
1 TACTAAGGGCTAATTTTTGTTATTATGCC
34670252 TA
1 TA
34670254 ATGAAAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 16 0.55
29 13 0.45
ACGTcount: A:0.25, C:0.14, G:0.15, T:0.46
Consensus pattern (29 bp):
TACTAAGGGCTAATTTTTGTTATTATGCC
Found at i:34670656 original size:16 final size:16
Alignment explanation
Indices: 34670635--34670665 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
34670625 TTAATATATA
34670635 TATATTTGATTAAAAG
1 TATATTTGATTAAAAG
34670651 TATATTTGATTAAAA
1 TATATTTGATTAAAA
34670666 ATAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (16 bp):
TATATTTGATTAAAAG
Found at i:34678696 original size:51 final size:55
Alignment explanation
Indices: 34678568--34678697 Score: 144
Period size: 51 Copynumber: 2.4 Consensus size: 55
34678558 AAGTATAAGT
*
34678568 TAAAGTGTTCAAGGAATGAAA-TATGCATGCTATGACGCTTTTTGTTATGCTATGC
1 TAAAGTGTTCAAGAAAT-AAATTATGCATGCTATGACGCTTTTTGTTATGCTATGC
* ** * *
34678623 TAAAGTGTTCAATAAAGGAATTATGCAT-C-CT-ACGC-TTTTGTTATGCTATGT
1 TAAAGTGTTCAAGAAATAAATTATGCATGCTATGACGCTTTTTGTTATGCTATGC
* *
34678674 TGAAGTGTTCAAGCAATAAATTAT
1 TAAAGTGTTCAAGAAATAAATTAT
34678698 ATATATTATA
Statistics
Matches: 63, Mismatches: 11, Indels: 6
0.79 0.14 0.08
Matches are distributed among these distances:
51 34 0.54
52 4 0.06
53 1 0.02
54 3 0.05
55 21 0.33
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (55 bp):
TAAAGTGTTCAAGAAATAAATTATGCATGCTATGACGCTTTTTGTTATGCTATGC
Found at i:34680119 original size:19 final size:19
Alignment explanation
Indices: 34680095--34680131 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
34680085 TTATTCTAAA
34680095 ATTTATCTACCTAAATAAG
1 ATTTATCTACCTAAATAAG
34680114 ATTTATCTACCTAAATAA
1 ATTTATCTACCTAAATAA
34680132 CTTTAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.16, G:0.03, T:0.38
Consensus pattern (19 bp):
ATTTATCTACCTAAATAAG
Found at i:34683221 original size:72 final size:72
Alignment explanation
Indices: 34683111--34683316 Score: 295
Period size: 72 Copynumber: 2.9 Consensus size: 72
34683101 TAATCAGAGT
* * * *
34683111 TCCAACAACTCGTCCTTAGAAGTAATAAATATTAATATTTTAAATAGATATAGCCAAAATAATAT
1 TCCAACAACTAGTCCTTGGAAGTAATAAATATTAATATTTTAAATAAATGTAGCCAAAATAATAT
34683176 AATGAGG
66 AATGAGG
* * **
34683183 TCCATCAACTTGTGGTTGGAAGTAATAAATATTAATATTTTAAATAAATGTAGCCAAAATAATAT
1 TCCAACAACTAGTCCTTGGAAGTAATAAATATTAATATTTTAAATAAATGTAGCCAAAATAATAT
* * *
34683248 ATTTATG
66 AATGAGG
* *
34683255 TCCAACAACTAGTCCTTGGATGTAATAAATATTAATATTTTAAATAAACGTAGCCAAAATAA
1 TCCAACAACTAGTCCTTGGAAGTAATAAATATTAATATTTTAAATAAATGTAGCCAAAATAA
34683317 AATCCAACAA
Statistics
Matches: 118, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
72 118 1.00
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (72 bp):
TCCAACAACTAGTCCTTGGAAGTAATAAATATTAATATTTTAAATAAATGTAGCCAAAATAATAT
AATGAGG
Found at i:34684053 original size:20 final size:20
Alignment explanation
Indices: 34684016--34684055 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
34684006 TTGTTTTCCG
**
34684016 TATTATATAATTTTAATTAA
1 TATTATATAATTAAAATTAA
*
34684036 TATTTTATAATTAAAATTAA
1 TATTATATAATTAAAATTAA
34684056 AAATTTATGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TATTATATAATTAAAATTAA
Found at i:34684178 original size:39 final size:40
Alignment explanation
Indices: 34684135--34684215 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
34684125 AAATCTATTT
* *
34684135 ATAACAACTTAATTTT-TATTTAAATTTATATATAATTCA
1 ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
34684174 ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
1 ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
34684214 AT
1 AT
34684216 CTTATAATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 16 0.41
40 23 0.59
ACGTcount: A:0.46, C:0.07, G:0.01, T:0.46
Consensus pattern (40 bp):
ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
Found at i:34690326 original size:18 final size:18
Alignment explanation
Indices: 34690300--34690345 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
34690290 CAGAAACATG
* *
34690300 TACAGATGTAAATACGGA
1 TACAAATGTAAATACAGA
*
34690318 TACAAATGTAAATATAGA
1 TACAAATGTAAATACAGA
34690336 TACAAATGTA
1 TACAAATGTA
34690346 TTTATCCTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.50, C:0.09, G:0.15, T:0.26
Consensus pattern (18 bp):
TACAAATGTAAATACAGA
Found at i:34692352 original size:18 final size:18
Alignment explanation
Indices: 34692324--34692367 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
34692314 AACCTATTAT
34692324 AATTGTTTTTTGA-ATTTTG
1 AATT-TTTTTT-ATATTTTG
*
34692343 AATTTTTTTTATTTTTTG
1 AATTTTTTTTATATTTTG
34692361 AATTTTT
1 AATTTTT
34692368 AAATTAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 1 0.04
18 18 0.78
19 4 0.17
ACGTcount: A:0.20, C:0.00, G:0.09, T:0.70
Consensus pattern (18 bp):
AATTTTTTTTATATTTTG
Found at i:34699179 original size:73 final size:73
Alignment explanation
Indices: 34699052--34699209 Score: 298
Period size: 73 Copynumber: 2.2 Consensus size: 73
34699042 AAATCACAAT
*
34699052 TTCATAAGGAATATCACGATTCCACAACCACTTCCAATCAAAGTGAAGTGTAGTTTCTATGCCTT
1 TTCATAAGGAATATCACGATTCCACAACCACTTCCAATCAAAGTGAAGTATAGTTTCTATGCCTT
34699117 CATATGAA
66 CATATGAA
*
34699125 TTCATAAGGAATATCACGATTCCACAACCACTTCCAATCAAAGTTAAGTATAGTTTCTATGCCTT
1 TTCATAAGGAATATCACGATTCCACAACCACTTCCAATCAAAGTGAAGTATAGTTTCTATGCCTT
34699190 CATATGAA
66 CATATGAA
34699198 TTCATAAGGAAT
1 TTCATAAGGAAT
34699210 TTAGGGTTTA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
73 83 1.00
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.31
Consensus pattern (73 bp):
TTCATAAGGAATATCACGATTCCACAACCACTTCCAATCAAAGTGAAGTATAGTTTCTATGCCTT
CATATGAA
Found at i:34702909 original size:52 final size:52
Alignment explanation
Indices: 34702846--34702949 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
34702836 TTGTATAAAT
34702846 GTCATGTATGTGTATATAATTTACCTCATATCCGATAATTCCTGATAAATGA
1 GTCATGTATGTGTATATAATTTACCTCATATCCGATAATTCCTGATAAATGA
*
34702898 GTCATGTATGTGTATATAATTTACCTCATATCTGATAATTCCTGATAAATGA
1 GTCATGTATGTGTATATAATTTACCTCATATCCGATAATTCCTGATAAATGA
34702950 ATAAGTCCCA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.39
Consensus pattern (52 bp):
GTCATGTATGTGTATATAATTTACCTCATATCCGATAATTCCTGATAAATGA
Found at i:34704757 original size:43 final size:42
Alignment explanation
Indices: 34704693--34704819 Score: 159
Period size: 43 Copynumber: 3.0 Consensus size: 42
34704683 AGGATTTTCG
34704693 ATATGTGTTATCGTGTAAGACCACGTCTGGGACGTTGGCATCGA
1 ATATGTGTTA-CGTGTAAGACCACGTCTGGGACGTTGGCATC-A
* **
34704737 CT-TGTGTTTACGTGTAAGACC-CTGTCTGGGACAATGGCATCA
1 ATATGTG-TTACGTGTAAGACCAC-GTCTGGGACGTTGGCATCA
*
34704779 ATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 ATATGTG-TTACGTGTAAGACCACGTCTGGGACGTTGGCAT
34704820 TGTACGAGTC
Statistics
Matches: 71, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
42 3 0.04
43 63 0.89
44 5 0.07
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (42 bp):
ATATGTGTTACGTGTAAGACCACGTCTGGGACGTTGGCATCA
Found at i:34711044 original size:20 final size:20
Alignment explanation
Indices: 34711021--34711062 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
34711011 TTGTAATAGT
34711021 TATTTGAAAT-ATTTCACATA
1 TATTTGAAATAATTT-ACATA
34711041 TATTTGAAATAATTTACATA
1 TATTTGAAATAATTTACATA
34711061 TA
1 TA
34711063 AAATCAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (20 bp):
TATTTGAAATAATTTACATA
Found at i:34711553 original size:207 final size:197
Alignment explanation
Indices: 34711252--34711773 Score: 610
Period size: 207 Copynumber: 2.6 Consensus size: 197
34711242 AATGCATATA
*
34711252 AAAAAAATATTTGATGTATAAAAATTATATATATAGAAAAATATA--AAAAAATTAGTTGATGTT
1 AAAAAAATATTTGA--TATAAAAATTATATATAAAGAAAAATATATCAAAAAATTAGTTGATG-T
* * *
34711315 TTTTAAAAAATAAAAAATAAATAACATAATGATACTTATGAATATATTTTCACTATATCCACAAT
63 TTTTAAAAAATAAATAAT-ATTAACATAATGATAC-TATGAATATATTTTCA-TATATCAACAAT
* * * * *
34711380 GCAAGTGAAAAAAAATAATGATATTTGAAATAATTATTTTTATAATATTAAAATTTATGTTACCC
125 GCAAGTG--AAAAAATAAAGAGATTTGAAATAATTAATTTTAT-ATATTAAAATTTACGATACCC
34711445 ACAATGTACGT
187 ACAATGTACGT
* * * *
34711456 AAAAACATTTTTTTTTATATAAAGAATTATTTATAAAGAAAAATATATCAAAAAATTAGTTGATG
1 AAAAA-A--ATATTTGATATAAA-AATTATATATAAAGAAAAATATATCAAAAAATTAGTTGATG
* * *
34711521 TTTTT-AAAAATACATATAATTTTAACATAATGATACATATGAATATATATTCATCATATCAATA
62 TTTTTAAAAAATA-A-ATAATATTAACATAATGATAC-TATGAATATATTTTCAT-ATATCAACA
* * *
34711585 ATGTAAGTGAAAAAATAAAGAGATTTGAAATAATTAATTTTATATGTTAGAATTTACGATACCCA
123 ATGCAAGTGAAAAAATAAAGAGATTTGAAATAATTAATTTTATATATTAAAATTTACGATACCCA
34711650 CAATGTACGT
188 CAATGTACGT
* *
34711660 AAAAAAATATTTGACATAAAAA--ATATATAAAGAAAAATATATCAAAAAAATAGTTGATGTTTT
1 AAAAAAATATTTGATATAAAAATTATATATAAAGAAAAATATATCAAAAAATTAGTTGATGTTTT
* *
34711723 TAAAAAATAAA-ATATATTAACATAATTATA-TATAAAT-TATTTTCATTATAT
66 TAAAAAATAAATA-ATATTAACATAATGATACTATGAATATATTTTCA-TATAT
34711774 AATTACATAT
Statistics
Matches: 276, Mismatches: 30, Indels: 34
0.81 0.09 0.10
Matches are distributed among these distances:
194 11 0.04
195 7 0.03
196 1 0.00
197 16 0.06
198 41 0.15
199 7 0.03
200 2 0.01
201 10 0.04
203 1 0.00
204 38 0.14
205 38 0.14
206 29 0.11
207 55 0.20
208 20 0.07
ACGTcount: A:0.50, C:0.06, G:0.07, T:0.36
Consensus pattern (197 bp):
AAAAAAATATTTGATATAAAAATTATATATAAAGAAAAATATATCAAAAAATTAGTTGATGTTTT
TAAAAAATAAATAATATTAACATAATGATACTATGAATATATTTTCATATATCAACAATGCAAGT
GAAAAAATAAAGAGATTTGAAATAATTAATTTTATATATTAAAATTTACGATACCCACAATGTAC
GT
Found at i:34711707 original size:12 final size:13
Alignment explanation
Indices: 34711677--34711711 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
34711667 TATTTGACAT
34711677 AAAAAATATATAA
1 AAAAAATATATAA
*
34711690 AGAAAAATATATCA
1 A-AAAAATATATAA
34711704 AAAAAATA
1 AAAAAATA
34711712 GTTGATGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.20
Consensus pattern (13 bp):
AAAAAATATATAA
Found at i:34713444 original size:13 final size:13
Alignment explanation
Indices: 34713428--34713453 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34713418 CTTTGCATAT
34713428 TGTCTTCAACAGG
1 TGTCTTCAACAGG
34713441 TGTCTTCAACAGG
1 TGTCTTCAACAGG
34713454 CTCGCACTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTCTTCAACAGG
Found at i:34717679 original size:25 final size:24
Alignment explanation
Indices: 34717621--34717679 Score: 57
Period size: 25 Copynumber: 2.3 Consensus size: 24
34717611 CAGATGGCCA
**
34717621 AAAGTAAAAAAATCTAGATATTTTT
1 AAAG-AAAAAAATCTAGATATTCCT
34717646 AAAGTAAAAAAATCTAGATATAATCCT
1 AAAG-AAAAAAATCTAGATAT--TCCT
34717673 AAA-AAAA
1 AAAGAAAA
34717680 GGCACCGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 25 0.83
27 5 0.17
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.27
Consensus pattern (24 bp):
AAAGAAAAAAATCTAGATATTCCT
Found at i:34717974 original size:17 final size:14
Alignment explanation
Indices: 34717950--34717997 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 14
34717940 TTTTTTGTTT
34717950 TTTGTTCTTTTTCC
1 TTTGTTCTTTTTCC
34717964 TGTTGTCTTCTTTGTT-C
1 T-TTG--TTCTTT-TTCC
34717981 TTTGTTCTTTTTCC
1 TTTGTTCTTTTTCC
34717995 TTT
1 TTT
34717998 TTTTGATTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
13 2 0.07
14 11 0.38
15 3 0.10
16 3 0.10
17 8 0.28
18 2 0.07
ACGTcount: A:0.00, C:0.19, G:0.10, T:0.71
Consensus pattern (14 bp):
TTTGTTCTTTTTCC
Found at i:34722017 original size:17 final size:20
Alignment explanation
Indices: 34721976--34722020 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
34721966 TTTTTTTTTC
34721976 TATAAAATACATATACAAAAT
1 TATAAAATACA-ATACAAAAT
34721997 TATAAAATAC-ATA-AAAA-
1 TATAAAATACAATACAAAAT
34722014 TATAAAA
1 TATAAAA
34722021 ATATTTATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.29
18 4 0.17
19 3 0.12
21 10 0.42
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (20 bp):
TATAAAATACAATACAAAAT
Found at i:34726798 original size:27 final size:26
Alignment explanation
Indices: 34726751--34726807 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
34726741 AATATATTAT
* *
34726751 TTTTAATTAATTAAGCATGAAATATGA
1 TTTTAATAAATTAAGCATGAAA-ATCA
*
34726778 TTTTAATAAAATTAAG-TTGAAAATCA
1 TTTTAAT-AAATTAAGCATGAAAATCA
34726804 TTTT
1 TTTT
34726808 TCCATTGCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 7 0.27
27 12 0.46
28 7 0.27
ACGTcount: A:0.44, C:0.04, G:0.09, T:0.44
Consensus pattern (26 bp):
TTTTAATAAATTAAGCATGAAAATCA
Found at i:34733534 original size:29 final size:29
Alignment explanation
Indices: 34733471--34733535 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
34733461 AGATTGATGA
* *
34733471 CCAAATTTAGCTCAAGAAAAGAATAAGGG
1 CCAAATTTAACTCAAAAAAAGAATAAGGG
**
34733500 TTAAATTTAACTCAAAAAAAGAATAAGGG
1 CCAAATTTAACTCAAAAAAAGAATAAGGG
34733529 CCAAATT
1 CCAAATT
34733536 GATAAAAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.51, C:0.12, G:0.15, T:0.22
Consensus pattern (29 bp):
CCAAATTTAACTCAAAAAAAGAATAAGGG
Found at i:34735191 original size:21 final size:19
Alignment explanation
Indices: 34735165--34735212 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
34735155 TAAAAGTTTT
34735165 TTATAAAATACATATACAAAA
1 TTATAAAATAC--ATACAAAA
*
34735186 TTATAAAATGCATACAAAA
1 TTATAAAATACATACAAAA
*
34735205 ATATAAAA
1 TTATAAAA
34735213 ATATTTATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 15 0.60
21 10 0.40
ACGTcount: A:0.62, C:0.08, G:0.02, T:0.27
Consensus pattern (19 bp):
TTATAAAATACATACAAAA
Found at i:34738577 original size:18 final size:18
Alignment explanation
Indices: 34738540--34738578 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
34738530 TCACCTTAGC
* * *
34738540 TTTATTTTGTTTTTGCGT
1 TTTATTTTCTTTATGAGT
34738558 TTTATTTTCTTTATGAGT
1 TTTATTTTCTTTATGAGT
34738576 TTT
1 TTT
34738579 TAAATTTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.10, C:0.05, G:0.13, T:0.72
Consensus pattern (18 bp):
TTTATTTTCTTTATGAGT
Found at i:34747026 original size:115 final size:114
Alignment explanation
Indices: 34746711--34747156 Score: 635
Period size: 114 Copynumber: 3.9 Consensus size: 114
34746701 AAAATAAGCA
* ** * *
34746711 TTAGCAGCGTTTTCCAGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACGTCGTTTTCTAAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* *
34746775 TCGGGGATTTAGCCGCTTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
66 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* * * *
34746824 TTAGCGGCGTTTTTGAGAAAGCACCACAAAAAAACCTAAGCCCAACCACGCCATTTTCTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* ** *
34746889 TTGGGGATTTAGCGGCGTTTTT-AGAAAAGCGCCTTTAATGCTTAGGGCT
66 TCGGGGATTTAGCGGCGTTTTTAAG-AAAGCGCCGCTAATGCTCAGGGCT
*
34746938 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAGAAAAACCTAAGCCCAACGACGCTGTTTTCTGAGCT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAA-AAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
* * * *
34747003 TTCGAGGATATAGCGGCATTTTTAAGAAAGCGCCGCTAATGCCCAGGGCT
65 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* *
34747053 TTAGCGGCGTTTTTGAGAAAGCGCAGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* *
34747118 TCGGGGATTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAA
66 TCGGGGATTTAGCGGCGTTTTTAAG-AAAGCGCCGCTAA
34747157 AGGTCTTGTT
Statistics
Matches: 292, Mismatches: 36, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
113 24 0.08
114 154 0.53
115 112 0.38
116 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (114 bp):
TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
Found at i:34751699 original size:75 final size:75
Alignment explanation
Indices: 34751584--34751798 Score: 376
Period size: 75 Copynumber: 2.9 Consensus size: 75
34751574 TGAATGGATC
34751584 TTCGGTTCCTCAGAATGGAGTAGATATTAGTCCAACAAGTACTAATTCTCATAGTATTCCCTCTT
1 TTCGGTTCCTCAGAATGGAGTAGATATTAGTCCAACAAGTACTAATTCTCATAGTATTCCCTCTT
34751649 TAAATGGGTA
66 TAAATGGGTA
* *
34751659 TTCGGCTCCTCAGAATGGAGTAGATATTAGTCCAACAAGTACTAATTCTTATAGTATTCCCTCTT
1 TTCGGTTCCTCAGAATGGAGTAGATATTAGTCCAACAAGTACTAATTCTCATAGTATTCCCTCTT
34751724 TAAATGGGTA
66 TAAATGGGTA
* * * *
34751734 TTCGGTTCCTCAAAATGAAGTAGATATTAGTCCAACAAGTACTAACTCTCATAGTATTCCTTCTT
1 TTCGGTTCCTCAGAATGGAGTAGATATTAGTCCAACAAGTACTAATTCTCATAGTATTCCCTCTT
34751799 ATTCTGGTGA
Statistics
Matches: 132, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 132 1.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.35
Consensus pattern (75 bp):
TTCGGTTCCTCAGAATGGAGTAGATATTAGTCCAACAAGTACTAATTCTCATAGTATTCCCTCTT
TAAATGGGTA
Found at i:34759337 original size:18 final size:17
Alignment explanation
Indices: 34759314--34759380 Score: 98
Period size: 18 Copynumber: 3.8 Consensus size: 17
34759304 TTGCGAGGCG
*
34759314 CCGGGTCCGATGGCAGAC
1 CCGGGTCCGATGGCTG-C
34759332 CCGGGTCCGATGGCTGCC
1 CCGGGTCCGATGGCTG-C
34759350 CCGGGTCCGATGGCTGC
1 CCGGGTCCGATGGCTGC
34759367 CCTGGGTCCGATGG
1 CC-GGGTCCGATGG
34759381 AAGCCCCACC
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
17 3 0.07
18 43 0.93
ACGTcount: A:0.09, C:0.34, G:0.40, T:0.16
Consensus pattern (17 bp):
CCGGGTCCGATGGCTGC
Found at i:34762651 original size:43 final size:43
Alignment explanation
Indices: 34762569--34762947 Score: 512
Period size: 43 Copynumber: 8.9 Consensus size: 43
34762559 TAAAAGTCAT
* *
34762569 GACCTTTAGCGGCGC-TTTCCCACAAACGCCGCTATAGACCAC
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAG
* * *
34762611 GACCTTTAGCGGTGCTTTTTCCACAAACGCCGTTAAAGACCAG
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAG
*
34762654 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAT
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAG
* * * *
34762697 GACCTTTAGTGGCGCTTTTTCCACAAACACCGCTAAAGACCAT
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAG
* *
34762740 GACCTTTAGCGGCGCTTTTTCCACAAACGCCGCAAAAGACCAG
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAG
*
34762783 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAT
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAG
* *
34762826 GACCTTTAGCGGCACTTTTTCCACAAACGCCGCTAAAGACCAG
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAG
* * * *
34762869 GACCTTCAGCGGCGCTTTCCCCACAAACGCCGCTATAGAACA-
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAG
* * * * *
34762911 AACTTTTAGCGACGC-TTCCCGCAAAAACGCCGCTAAA
1 GACCTTTAGCGGCGCTTTTCC-CACAAACGCCGCTAAA
34762948 ACATATCATG
Statistics
Matches: 301, Mismatches: 34, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
41 5 0.02
42 39 0.13
43 257 0.85
ACGTcount: A:0.27, C:0.34, G:0.19, T:0.21
Consensus pattern (43 bp):
GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAG
Found at i:34766963 original size:15 final size:15
Alignment explanation
Indices: 34766940--34766969 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
34766930 AAAATTTTAT
*
34766940 TTTATTTTTTTATAA
1 TTTAATTTTTTATAA
34766955 TTTAATTTTTTATAA
1 TTTAATTTTTTATAA
34766970 AATAAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTAATTTTTTATAA
Found at i:34767530 original size:14 final size:14
Alignment explanation
Indices: 34767493--34767523 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
34767483 CCTAAATCCC
*
34767493 TAACTCTTAACCCT
1 TAACTCTTAACACT
34767507 TAACTCTTAACACT
1 TAACTCTTAACACT
34767521 TAA
1 TAA
34767524 ACCTTAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35
Consensus pattern (14 bp):
TAACTCTTAACACT
Found at i:34767544 original size:21 final size:22
Alignment explanation
Indices: 34767460--34767537 Score: 86
Period size: 22 Copynumber: 3.6 Consensus size: 22
34767450 CTAACCCGAC
* *
34767460 CCTTAAATCCCTAAATCATAAA
1 CCTTAAATCCCTAACTCTTAAA
* *
34767482 CCCTAAATCCCTAACTCTTAAC
1 CCTTAAATCCCTAACTCTTAAA
* * *
34767504 CCTTAACT-CTTAACACTTAAA
1 CCTTAAATCCCTAACTCTTAAA
34767525 CCTTAAATCCCTA
1 CCTTAAATCCCTA
34767538 CCCTTAATCC
Statistics
Matches: 44, Mismatches: 11, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
21 17 0.39
22 27 0.61
ACGTcount: A:0.37, C:0.33, G:0.00, T:0.29
Consensus pattern (22 bp):
CCTTAAATCCCTAACTCTTAAA
Found at i:34767828 original size:8 final size:7
Alignment explanation
Indices: 34767793--34768005 Score: 92
Period size: 7 Copynumber: 29.9 Consensus size: 7
34767783 ACTAGTTAAT
34767793 CTAAACC
1 CTAAACC
34767800 CTAAACC
1 CTAAACC
34767807 CTAAA-C
1 CTAAACC
*
34767813 TTAAACC
1 CTAAACC
34767820 CTAAAACC
1 CT-AAACC
34767828 CTAAACC
1 CTAAACC
34767835 CATAAACC
1 C-TAAACC
* * *
34767843 CTTAGCA
1 CTAAACC
34767850 C-ATAACC
1 CTA-AACC
34767857 TCTAAACC
1 -CTAAACC
*
34767865 TTAAACC
1 CTAAACC
*
34767872 C-CAACC
1 CTAAACC
*
34767878 TTTAAACC
1 -CTAAACC
*
34767886 ATAAACC
1 CTAAACC
*
34767893 ATAAACC
1 CTAAACC
*
34767900 ATAAACC
1 CTAAACC
*
34767907 ATAAACC
1 CTAAACC
* *
34767914 ATAACCC
1 CTAAACC
34767921 CTAAACC
1 CTAAACC
*
34767928 CATAATCC
1 C-TAAACC
*
34767936 ATAAACC
1 CTAAACC
* **
34767943 TTAAAATG
1 CT-AAACC
*
34767951 GT-AACAC
1 CTAAAC-C
*
34767958 CTAAATC
1 CTAAACC
* *
34767965 TTAAACT
1 CTAAACC
34767972 CTAAACC
1 CTAAACC
* *
34767979 ATATACC
1 CTAAACC
34767986 CTAAACC
1 CTAAACC
**
34767993 AAAAACC
1 CTAAACC
34768000 CTAAAC
1 CTAAAC
34768006 TATAGTGATA
Statistics
Matches: 153, Mismatches: 41, Indels: 24
0.70 0.19 0.11
Matches are distributed among these distances:
6 11 0.07
7 107 0.70
8 34 0.22
9 1 0.01
ACGTcount: A:0.46, C:0.33, G:0.01, T:0.19
Consensus pattern (7 bp):
CTAAACC
Found at i:34768348 original size:41 final size:41
Alignment explanation
Indices: 34768179--34768436 Score: 328
Period size: 41 Copynumber: 6.3 Consensus size: 41
34768169 TAAATTATTT
* *
34768179 TAAATCCCTGAGCATTAGCGGCGCTTT-TTAGAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCA-AAAACGCCGC
** * * * * *
34768220 TAAA--AATAGAACATTTGCGGCGTTTTATAAAAAACGCCGC
1 TAAAGCCCT-GAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
34768260 TAAAAGCCCTGAGCATTAGCGGCGCTTT-TAACAAAAACGCCGC
1 T-AAAGCCCTGAGCATTAGCGGCGCTTTCT--CAAAAACGCCGC
* *
34768303 TAAAGCACTGAGCATTAGCGGCGCTTTCTCAAAAATGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
34768344 TAAAGCCCTGAGCATTAGCGGCGC-TTCTCCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCT-CAAAAACGCCGC
34768385 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
34768426 TAAAGCCCTGA
1 TAAAGCCCTGA
34768437 AAGCTCACAA
Statistics
Matches: 191, Mismatches: 16, Indels: 20
0.84 0.07 0.09
Matches are distributed among these distances:
39 1 0.01
40 30 0.16
41 102 0.53
42 44 0.23
43 14 0.07
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.21
Consensus pattern (41 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
Found at i:34768596 original size:40 final size:40
Alignment explanation
Indices: 34768473--34768680 Score: 253
Period size: 40 Copynumber: 5.2 Consensus size: 40
34768463 AAGGTTTTTT
* * * * *
34768473 GCGGCGCTTTCTGGAAAACGCCGCTAATGCTTG-TTTTTA
1 GCGGCGTTTTCCGAAAAACGCCGCTAATGCTCGATCTTTA
* * * * *
34768512 GCGGCGCTTTCTGGAAAACGCCGCTAATGCTTG-TTTTTA
1 GCGGCGTTTTCCGAAAAACGCCGCTAATGCTCGATCTTTA
* * *
34768551 GCGGCGTTTTCCGTAAATCGCCGCTAATACTCGATCTTTA
1 GCGGCGTTTTCCGAAAAACGCCGCTAATGCTCGATCTTTA
34768591 GCGGCGTTTTCC-AAAAAGCGCCGCTAATGCTCGATCTTTA
1 GCGGCGTTTTCCGAAAAA-CGCCGCTAATGCTCGATCTTTA
34768631 GCGGCGTTTTCC-AAAAAGCGCCGCTAATGCTCGATCTTTA
1 GCGGCGTTTTCCGAAAAA-CGCCGCTAATGCTCGATCTTTA
34768671 GCGGCGTTTT
1 GCGGCGTTTT
34768681 TTATACAAAC
Statistics
Matches: 157, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 69 0.44
40 88 0.56
ACGTcount: A:0.19, C:0.25, G:0.24, T:0.31
Consensus pattern (40 bp):
GCGGCGTTTTCCGAAAAACGCCGCTAATGCTCGATCTTTA
Found at i:34768704 original size:12 final size:12
Alignment explanation
Indices: 34768687--34768712 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
34768677 TTTTTTATAC
34768687 AAACGCCGCTAA
1 AAACGCCGCTAA
34768699 AAACGCCGCTAA
1 AAACGCCGCTAA
34768711 AA
1 AA
34768713 GCCTGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:34769217 original size:24 final size:21
Alignment explanation
Indices: 34769169--34769210 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
34769159 AATACTCAAC
*
34769169 TTCTTCCCCGTACTATATGTA
1 TTCTTCCCCGTACAATATGTA
*
34769190 TTCTTCCCCGTAGAATATGTA
1 TTCTTCCCCGTACAATATGTA
34769211 CCATTCTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.26, G:0.12, T:0.40
Consensus pattern (21 bp):
TTCTTCCCCGTACAATATGTA
Found at i:34777656 original size:7 final size:7
Alignment explanation
Indices: 34777646--34777671 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
34777636 TTGTACCCAA
34777646 AATTCCT
1 AATTCCT
34777653 AATTCCT
1 AATTCCT
34777660 AATTCCT
1 AATTCCT
34777667 AATTC
1 AATTC
34777672 AAATATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.27, G:0.00, T:0.42
Consensus pattern (7 bp):
AATTCCT
Found at i:34781294 original size:2 final size:2
Alignment explanation
Indices: 34781289--34781320 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
34781279 TTATAAATTA
34781289 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
34781321 TAATAGNNNN
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:34781555 original size:2 final size:2
Alignment explanation
Indices: 34781548--34781583 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
34781538 ATTCTCAATT
34781548 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
34781584 AATTCTATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:34786394 original size:20 final size:21
Alignment explanation
Indices: 34786356--34786394 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
34786346 AATTCAGCAG
*
34786356 ATTTTGTTGGCTTAATTCTAT
1 ATTTTGTTGACTTAATTCTAT
*
34786377 ATTTTG-TGACTTAGTTCT
1 ATTTTGTTGACTTAATTCT
34786395 TGTAGAACTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.18, C:0.10, G:0.15, T:0.56
Consensus pattern (21 bp):
ATTTTGTTGACTTAATTCTAT
Found at i:34791503 original size:22 final size:20
Alignment explanation
Indices: 34791475--34791514 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
34791465 ATTTAAATTT
34791475 TTTTCTTTTATGTTCTTTTAAA
1 TTTTCTTTTAT-TT-TTTTAAA
34791497 TTTTCTTTTATTTTTTTA
1 TTTTCTTTTATTTTTTTA
34791515 TTCTCTTCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 2 0.11
22 11 0.61
ACGTcount: A:0.15, C:0.07, G:0.03, T:0.75
Consensus pattern (20 bp):
TTTTCTTTTATTTTTTTAAA
Found at i:34798121 original size:2 final size:2
Alignment explanation
Indices: 34798114--34798154 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
34798104 CATAAACAGG
34798114 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
34798155 GGGGGCATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:34800548 original size:19 final size:19
Alignment explanation
Indices: 34800522--34800603 Score: 137
Period size: 19 Copynumber: 4.3 Consensus size: 19
34800512 CTTAGATACC
34800522 CTTAGATATGATATGCAAT
1 CTTAGATATGATATGCAAT
*
34800541 CCTAGATATGATATGCAAT
1 CTTAGATATGATATGCAAT
**
34800560 CTTAGATATGATATATAAT
1 CTTAGATATGATATGCAAT
34800579 CTTAGATATGATATGCAAT
1 CTTAGATATGATATGCAAT
34800598 CTTAGA
1 CTTAGA
34800604 ATATATGATT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 57 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
CTTAGATATGATATGCAAT
Done.