Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 ID=Chr12-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35429946
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 509281 characters in sequence are not A, C, G, or T
File 30 of 120
Found at i:7963821 original size:13 final size:12
Alignment explanation
Indices: 7963800--7963839 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
7963790 GGCCTCTTCC
*
7963800 TTCTTTTTTCTT
1 TTCTTTTTTTTT
7963812 TTCTTTTTTTTCT
1 TTCTTTTTTTT-T
7963825 TTCTTTTCTTTTT
1 TTCTTTT-TTTTT
7963838 TT
1 TT
7963840 ATTCTCTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 10 0.40
13 11 0.44
14 4 0.16
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTCTTTTTTTTT
Found at i:7963824 original size:9 final size:9
Alignment explanation
Indices: 7963805--7963839 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
7963795 CTTCCTTCTT
7963805 TTTTCTTTTC
1 TTTT-TTTTC
7963815 TTTTTTTTC
1 TTTTTTTTC
*
7963824 TTTCTTTTC
1 TTTTTTTTC
7963833 TTTTTTT
1 TTTTTTT
7963840 ATTCTCTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 19 0.83
10 4 0.17
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:7963829 original size:18 final size:18
Alignment explanation
Indices: 7963806--7963859 Score: 74
Period size: 18 Copynumber: 3.0 Consensus size: 18
7963796 TTCCTTCTTT
7963806 TTTCTTTTCTTTTTTTTC
1 TTTCTTTTCTTTTTTTTC
7963824 TTTCTTTTCTTTTTTTAT-
1 TTTCTTTTCTTTTTTT-TC
* *
7963842 TCTCTTTTCATTTTTTTC
1 TTTCTTTTCTTTTTTTTC
7963860 CTGTACTACA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 1 0.03
18 30 0.94
19 1 0.03
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTCTTTTCTTTTTTTTC
Found at i:7978205 original size:41 final size:41
Alignment explanation
Indices: 7978108--7978263 Score: 176
Period size: 41 Copynumber: 3.8 Consensus size: 41
7978098 TCTGAAATTC
* * **
7978108 GAGATAGCTTCGACTAT-TAATGACACTTAGTGTGCGATTT
1 GAGATAGCTTCGGCTATATAATGGCACTTAGTGTGCGAGAT
7978148 G-GAATAGCTTCGGCTATAT-ATGGCACTTAGTGTGCGAGACT
1 GAG-ATAGCTTCGGCTATATAATGGCACTTAGTGTGCGAGA-T
*
7978189 GAGATAGCTTCGGCTATGTAA-GGCACTTAGTGTGCGAGAT
1 GAGATAGCTTCGGCTATATAATGGCACTTAGTGTGCGAGAT
* * * *
7978229 TATAATAGCTTCGGCTATATGATGGCAATTAGTGT
1 GA-GATAGCTTCGGCTATATAATGGCACTTAGTGT
7978264 ACGAAACATT
Statistics
Matches: 99, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
39 1 0.01
40 33 0.33
41 52 0.53
42 13 0.13
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (41 bp):
GAGATAGCTTCGGCTATATAATGGCACTTAGTGTGCGAGAT
Found at i:7978223 original size:81 final size:83
Alignment explanation
Indices: 7978108--7978263 Score: 228
Period size: 81 Copynumber: 1.9 Consensus size: 83
7978098 TCTGAAATTC
* *
7978108 GAGATAGCTTCGACTATTAATGACACTTAGTGTGCGA-TTTGGAATAGCTTCGGCTATAT-ATGG
1 GAGATAGCTTCGACTATTAATGACACTTAGTGTGCGAGATTAGAATAGCTTCGGCTATATGATGG
*
7978171 CACTTAGTGTGCGAGACT
66 CAATTAGTGTGCGAGACT
* * *
7978189 GAGATAGCTTCGGCTATGTAA-GGCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATATGATG
1 GAGATAGCTTCGACTAT-TAATGACACTTAGTGTGCGAGATTAGAATAGCTTCGGCTATATGATG
7978253 GCAATTAGTGT
65 GCAATTAGTGT
7978264 ACGAAACATT
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
81 31 0.47
82 22 0.33
83 13 0.20
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (83 bp):
GAGATAGCTTCGACTATTAATGACACTTAGTGTGCGAGATTAGAATAGCTTCGGCTATATGATGG
CAATTAGTGTGCGAGACT
Found at i:7978986 original size:46 final size:46
Alignment explanation
Indices: 7978933--7979177 Score: 319
Period size: 46 Copynumber: 5.3 Consensus size: 46
7978923 TTTTATATGT
*
7978933 TATAATGCTGTCCATTTTGAGCATATTGATGCTGTCCAATTTGATG
1 TATAATGCTGTCCATTTTGAGCATATTGATGCTATCCAATTTGATG
* * * * *
7978979 TATAATGCTATCCAATTTGAGCATATTAAAGCTATCCAATTTAATG
1 TATAATGCTGTCCATTTTGAGCATATTGATGCTATCCAATTTGATG
* * *
7979025 TATAATGCTGTCCATTTTGAGTATATTGATGTTACCCAATTTGATG
1 TATAATGCTGTCCATTTTGAGCATATTGATGCTATCCAATTTGATG
* * * *
7979071 TATAATGTTGTCCATTTTGAGTATATTGATGCTGTCTAATTTGATG
1 TATAATGCTGTCCATTTTGAGCATATTGATGCTATCCAATTTGATG
* * * *
7979117 TATAATGTTGTCCATTTTGAGCATATTAATGTTTTCCAATTTGATG
1 TATAATGCTGTCCATTTTGAGCATATTGATGCTATCCAATTTGATG
*
7979163 TATAAATGTTGTCCA
1 TAT-AATGCTGTCCA
7979178 AAACAACGTA
Statistics
Matches: 174, Mismatches: 24, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
46 163 0.94
47 11 0.06
ACGTcount: A:0.28, C:0.13, G:0.16, T:0.43
Consensus pattern (46 bp):
TATAATGCTGTCCATTTTGAGCATATTGATGCTATCCAATTTGATG
Found at i:7979154 original size:24 final size:23
Alignment explanation
Indices: 7978935--7979178 Score: 137
Period size: 24 Copynumber: 10.6 Consensus size: 23
7978925 TTATATGTTA
* *
7978935 TAATGCTGTCCATTTTGAGCATAT
1 TAATGTTGTCCAATTTGAG-ATAT
* *
7978959 TGATGCTGTCCAATTTGATG-TA-
1 TAATGTTGTCCAATTTGA-GATAT
* *
7978981 TAATGCTATCCAATTTGAGCATAT
1 TAATGTTGTCCAATTTGAG-ATAT
* * * *
7979005 TAAAGCTATCCAATTT-A-ATGT
1 TAATGTTGTCCAATTTGAGATAT
* *
7979026 ATAATGCTGTCCATTTTGAGTATAT
1 -TAATGTTGTCCAATTTGAG-ATAT
* **
7979051 TGATGTTACCCAATTTGATG-TA-
1 TAATGTTGTCCAATTTGA-GATAT
*
7979073 TAATGTTGTCCATTTTGAGTATAT
1 TAATGTTGTCCAATTTGAG-ATAT
* * *
7979097 TGATGCTGTCTAATTTGATG-TA-
1 TAATGTTGTCCAATTTGA-GATAT
*
7979119 TAATGTTGTCCATTTTGAGCATAT
1 TAATGTTGTCCAATTTGAG-ATAT
*
7979143 TAATGTTTTCCAATTTGATG-TAT
1 TAATGTTGTCCAATTTGA-GATAT
*
7979166 AAATGTTGTCCAA
1 TAATGTTGTCCAA
7979179 AACAACGTAG
Statistics
Matches: 172, Mismatches: 31, Indels: 35
0.72 0.13 0.15
Matches are distributed among these distances:
21 6 0.03
22 57 0.33
23 28 0.16
24 74 0.43
25 7 0.04
ACGTcount: A:0.28, C:0.13, G:0.16, T:0.43
Consensus pattern (23 bp):
TAATGTTGTCCAATTTGAGATAT
Found at i:7981698 original size:11 final size:11
Alignment explanation
Indices: 7981681--7981710 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
7981671 ATCTTTTTTA
7981681 TTATTTTTATT
1 TTATTTTTATT
*
7981692 TTCTTTTTATT
1 TTATTTTTATT
7981703 TTATTTTT
1 TTATTTTT
7981711 CCTCTCTCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.83
Consensus pattern (11 bp):
TTATTTTTATT
Found at i:7983055 original size:13 final size:13
Alignment explanation
Indices: 7983039--7983065 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7983029 CACTTTACGC
7983039 TAACAAATGGTTT
1 TAACAAATGGTTT
7983052 TAACAAATGGTTT
1 TAACAAATGGTTT
7983065 T
1 T
7983066 TGGAAACACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (13 bp):
TAACAAATGGTTT
Found at i:7990284 original size:46 final size:45
Alignment explanation
Indices: 7990216--7990378 Score: 193
Period size: 45 Copynumber: 3.6 Consensus size: 45
7990206 ACAGGAAACG
*
7990216 CCATGGTTGAAAAATACCATGGCATTATACACAAAACGAGAAAGA
1 CCATAGTTGAAAAATACCATGGCATTATACACAAAACGAGAAAGA
* *
7990261 CCATGGTTGAAAAAATACCATGGCATTATACCCAAAACGAGAAAGA
1 CCATAGTTG-AAAAATACCATGGCATTATACACAAAACGAGAAAGA
* * * * * * *
7990307 CCATAGTTGAGAGATACTATGGCATTACATACGAAAC-AAATAAGA
1 CCATAGTTGAAAAATACCATGGCATTATACACAAAACGAGA-AAGA
* *
7990352 CCATAGTTGAAAGATACTATGGCATTA
1 CCATAGTTGAAAAATACCATGGCATTA
7990379 CATCGATAAC
Statistics
Matches: 105, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
44 2 0.02
45 60 0.57
46 43 0.41
ACGTcount: A:0.44, C:0.17, G:0.18, T:0.21
Consensus pattern (45 bp):
CCATAGTTGAAAAATACCATGGCATTATACACAAAACGAGAAAGA
Found at i:7990352 original size:45 final size:44
Alignment explanation
Indices: 7990303--7990417 Score: 169
Period size: 45 Copynumber: 2.5 Consensus size: 44
7990293 CAAAACGAGA
*
7990303 AAGACCATAGTTGAGAGATACTATGGCATTACATACGA-AACAAAT
1 AAGACCATAGTTGA-AGATACTATGGCATTACAT-CGATAACAAAC
7990348 AAGACCATAGTTGAAAGATACTATGGCATTACATCGATAACAAAC
1 AAGACCATAGTTG-AAGATACTATGGCATTACATCGATAACAAAC
*
7990393 AAGACCATAGTTTTAAGATACTATG
1 AAGACCATAG-TTGAAGATACTATG
7990418 ACACCACTTC
Statistics
Matches: 65, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
44 3 0.05
45 59 0.91
46 3 0.05
ACGTcount: A:0.43, C:0.16, G:0.17, T:0.24
Consensus pattern (44 bp):
AAGACCATAGTTGAAGATACTATGGCATTACATCGATAACAAAC
Found at i:7992636 original size:27 final size:27
Alignment explanation
Indices: 7992576--7992638 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
7992566 ATACATATCA
* *
7992576 TAAGGCTATAACAGTCATTTTGACCCC
1 TAAGGGTATAACAGTCATTTTGACCAC
*
7992603 TAGGGGTATAACAGTCATTTT-ACCAC
1 TAAGGGTATAACAGTCATTTTGACCAC
7992629 TCAAGGGTAT
1 T-AAGGGTAT
7992639 TTCGGTCATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 5 0.16
27 26 0.84
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (27 bp):
TAAGGGTATAACAGTCATTTTGACCAC
Found at i:7992646 original size:27 final size:26
Alignment explanation
Indices: 7992616--7992865 Score: 169
Period size: 27 Copynumber: 9.3 Consensus size: 26
7992606 GGGTATAACA
**
7992616 GTCATTTTACCACTCAAGGGTATTTCG
1 GTCATTTTACC-CTCGGGGGTATTTCG
*
7992643 GTCATTTTTCCCATCGGGGGTATTTCG
1 GTCATTTTACCC-TCGGGGGTATTTCG
* * * **
7992670 ATCATTTTACCTTATGGGGGTATTTTA
1 GTCATTTTACCCT-CGGGGGTATTTCG
* * *
7992697 GTCATTTTATCCAAT-AGTGGTATTTCG
1 GTCATTTTA-CC-CTCGGGGGTATTTCG
* ** * * **
7992724 GTCATTTTGTCTTTTGGGGCTATTTTA
1 GTCATTTT-ACCCTCGGGGGTATTTCG
*
7992751 GTCATTTTATCCCTCAGGGGTATTTCG
1 GTCATTTTA-CCCTCGGGGGTATTTCG
*
7992778 GTCATTTTACCCCTCAGGGGTATTTCG
1 GTCATTTTA-CCCTCGGGGGTATTTCG
* **
7992805 ATCATTTTATCTTTCGGGGGTATTTCG
1 GTCATTTTA-CCCTCGGGGGTATTTCG
* **
7992832 ATCATTTTATCTTTCGGGGGTATTTCG
1 GTCATTTTA-CCCTCGGGGGTATTTCG
7992859 GTCATTT
1 GTCATTT
7992866 GCGCACGAAT
Statistics
Matches: 178, Mismatches: 38, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
26 3 0.02
27 172 0.97
28 2 0.01
29 1 0.01
ACGTcount: A:0.16, C:0.18, G:0.21, T:0.45
Consensus pattern (26 bp):
GTCATTTTACCCTCGGGGGTATTTCG
Found at i:7992675 original size:54 final size:55
Alignment explanation
Indices: 7992617--7992865 Score: 197
Period size: 54 Copynumber: 4.6 Consensus size: 55
7992607 GGTATAACAG
* *
7992617 TCATTTTACCACTCAAGGGTATTTCGGTCATTTT-TCCCATCGGGGGTATTTCGA
1 TCATTTTACCACTCAGGGGTATTTCGGTCATTTTATCCCATCAGGGGTATTTCGA
* ** * * *
7992671 TCATTTTACCTTA-T-GGGGGTATTTTAGTCATTTTATCCAAT-AGTGGTATTTCGG
1 TCATTTTACC--ACTCAGGGGTATTTCGGTCATTTTATCCCATCAGGGGTATTTCGA
** * ** ** *
7992725 TCATTTTGTC-TTTTGGGGCTATTTTAGTCATTTTATCCC-TCAGGGGTATTTCGG
1 TCATTTTACCACTCAGGGG-TATTTCGGTCATTTTATCCCATCAGGGGTATTTCGA
* * ** *
7992779 TCATTTTACCCCTCAGGGGTATTTCGATCATTTTAT-CTTTCGGGGGTATTTCGA
1 TCATTTTACCACTCAGGGGTATTTCGGTCATTTTATCCCATCAGGGGTATTTCGA
* ** *
7992833 TCATTTTATCTTTCGGGGGTATTTCGGTCATTT
1 TCATTTTACCACTCAGGGGTATTTCGGTCATTT
7992866 GCGCACGAAT
Statistics
Matches: 157, Mismatches: 29, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
52 1 0.01
53 6 0.04
54 138 0.88
55 11 0.07
56 1 0.01
ACGTcount: A:0.16, C:0.18, G:0.21, T:0.45
Consensus pattern (55 bp):
TCATTTTACCACTCAGGGGTATTTCGGTCATTTTATCCCATCAGGGGTATTTCGA
Found at i:7992725 original size:81 final size:81
Alignment explanation
Indices: 7992616--7992865 Score: 260
Period size: 81 Copynumber: 3.1 Consensus size: 81
7992606 GGGTATAACA
* * **
7992616 GTCATTTTACCACTCAAGGGTATTTCGGTCATTTT-TCCCATCGGGGGTATTTCGATCATTTTAC
1 GTCATTTTACCAATCAGGGGTATTTCGGTCATTTTAT-CTTTCGGGGGTATTTCGATCATTTTAC
**
7992680 CTTATGGGGGTATTTTA
65 CTTATGGGGGTATTTCG
* * * * *
7992697 GTCATTTTATCCAAT-AGTGGTATTTCGGTCATTTTGTCTTTTGGGGCTATTT-TAGTCATTTTA
1 GTCATTTTA-CCAATCAGGGGTATTTCGGTCATTTTATCTTTCGGGGGTATTTCGA-TCATTTTA
*
7992760 TCCCTCA--GGGGTATTTCG
64 --CCTTATGGGGGTATTTCG
** * *
7992778 GTCATTTTACCCCTCAGGGGTATTTCGATCATTTTATCTTTCGGGGGTATTTCGATCATTTTATC
1 GTCATTTTACCAATCAGGGGTATTTCGGTCATTTTATCTTTCGGGGGTATTTCGATCATTTTACC
7992843 TT-TCGGGGGTATTTCG
66 TTAT-GGGGGTATTTCG
7992859 GTCATTT
1 GTCATTT
7992866 GCGCACGAAT
Statistics
Matches: 138, Mismatches: 21, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
79 2 0.01
80 4 0.03
81 122 0.88
82 6 0.04
83 4 0.03
ACGTcount: A:0.16, C:0.18, G:0.21, T:0.45
Consensus pattern (81 bp):
GTCATTTTACCAATCAGGGGTATTTCGGTCATTTTATCTTTCGGGGGTATTTCGATCATTTTACC
TTATGGGGGTATTTCG
Found at i:7995902 original size:3 final size:3
Alignment explanation
Indices: 7995894--7995975 Score: 164
Period size: 3 Copynumber: 27.3 Consensus size: 3
7995884 GAACTTACTT
7995894 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
7995942 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
7995976 CTCTCTCTTT
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 79 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:7996380 original size:3 final size:3
Alignment explanation
Indices: 7996372--7996412 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
7996362 NNNNNNNNNN
7996372 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
7996413 ATCATTAACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:7999223 original size:28 final size:28
Alignment explanation
Indices: 7999191--7999245 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
7999181 AATATCACAA
7999191 ACCGACTCAATTTTCAAAAATTTTAATG
1 ACCGACTCAATTTTCAAAAATTTTAATG
7999219 ACCGACTCAATTTTCAAAAATTTTAAT
1 ACCGACTCAATTTTCAAAAATTTTAAT
7999246 TTTCCATTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.40, C:0.18, G:0.05, T:0.36
Consensus pattern (28 bp):
ACCGACTCAATTTTCAAAAATTTTAATG
Found at i:8002468 original size:8 final size:8
Alignment explanation
Indices: 8002455--8002484 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
8002445 TAACATAGAA
8002455 ATTTTTTT
1 ATTTTTTT
8002463 ATTTTTTT
1 ATTTTTTT
*
8002471 ATATTTTT
1 ATTTTTTT
8002479 ATTTTT
1 ATTTTT
8002485 GAATTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (8 bp):
ATTTTTTT
Found at i:8005890 original size:15 final size:16
Alignment explanation
Indices: 8005866--8005907 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
8005856 TTAAACTATA
8005866 TAAAATTAAATAT-TAT
1 TAAAA-TAAATATGTAT
8005882 TAAAATAAA-ATGTAT
1 TAAAATAAATATGTAT
8005897 T-AAATAAATAT
1 TAAAATAAATAT
8005908 AATGAATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 9 0.38
15 10 0.42
16 5 0.21
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (16 bp):
TAAAATAAATATGTAT
Found at i:8014855 original size:19 final size:19
Alignment explanation
Indices: 8014807--8014849 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
8014797 ATTGAATGAA
*
8014807 TAAATTAAATAAGTAAATC
1 TAAAATAAATAAGTAAATC
*
8014826 TAAAATAAATAATTAAAT-
1 TAAAATAAATAAGTAAATC
8014844 TAAAAT
1 TAAAAT
8014850 CCAATATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (19 bp):
TAAAATAAATAAGTAAATC
Found at i:8015702 original size:8 final size:8
Alignment explanation
Indices: 8015691--8015789 Score: 94
Period size: 8 Copynumber: 12.4 Consensus size: 8
8015681 AAAAAATTGA
8015691 AAATTTAT
1 AAATTTAT
*
8015699 AAATATAT
1 AAATTTAT
*
8015707 AAATATAT
1 AAATTTAT
* *
8015715 ATATATAAT
1 AAAT-TTAT
**
8015724 AAATAAAAT
1 AAAT-TTAT
*
8015733 AAA--TAA
1 AAATTTAT
8015739 AAATTTAT
1 AAATTTAT
*
8015747 AGATTTAT
1 AAATTTAT
8015755 AAATTTAT
1 AAATTTAT
8015763 AAATTTAT
1 AAATTTAT
8015771 AAATTTAT
1 AAATTTAT
8015779 AAATTTAT
1 AAATTTAT
8015787 AAA
1 AAA
8015790 AATATATAAA
Statistics
Matches: 77, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
6 4 0.05
8 61 0.79
9 12 0.16
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (8 bp):
AAATTTAT
Found at i:8015795 original size:8 final size:9
Alignment explanation
Indices: 8015645--8015800 Score: 51
Period size: 8 Copynumber: 17.4 Consensus size: 9
8015635 TGTTTTGAAA
8015645 AAAAT-TAT
1 AAAATATAT
8015653 AAAA-ATAT
1 AAAATATAT
8015661 AAAATATAT
1 AAAATATAT
* * *
8015670 ATACATTTAC
1 A-AAATATAT
*
8015680 AAAA-AAATT
1 AAAATATA-T
*
8015689 GAAAATTTAT
1 -AAAATATAT
8015699 -AAATATAT
1 AAAATATAT
8015707 AAATATATAT
1 AAA-ATATAT
*
8015717 ATATAATAAAT
1 A-A-AATATAT
*
8015728 AAAATAAAT
1 AAAATATAT
*
8015737 AAAA-ATTT
1 AAAATATAT
* *
8015745 ATAGATTTAT
1 A-AAATATAT
*
8015755 -AAATTTAT
1 AAAATATAT
*
8015763 -AAATTTAT
1 AAAATATAT
*
8015771 -AAATTTAT
1 AAAATATAT
*
8015779 -AAATTTAT
1 AAAATATAT
8015787 AAAAATATAT
1 -AAAATATAT
8015797 AAAA
1 AAAA
8015801 GAACTAGAAA
Statistics
Matches: 116, Mismatches: 18, Indels: 27
0.72 0.11 0.17
Matches are distributed among these distances:
8 53 0.46
9 26 0.22
10 28 0.24
11 8 0.07
12 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (9 bp):
AAAATATAT
Found at i:8018804 original size:30 final size:29
Alignment explanation
Indices: 8018770--8018827 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
8018760 TCGTCCTTCC
8018770 TTTTCCATTCTTAATAAATGGCCCAATATT
1 TTTTCC-TTCTTAATAAATGGCCCAATATT
* **
8018800 TTTTCCTTTTTGCTAAATGGCCCAATAT
1 TTTTCCTTCTTAATAAATGGCCCAATAT
8018828 GTTTATGCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 19 0.76
30 6 0.24
ACGTcount: A:0.26, C:0.21, G:0.09, T:0.45
Consensus pattern (29 bp):
TTTTCCTTCTTAATAAATGGCCCAATATT
Found at i:8020527 original size:20 final size:20
Alignment explanation
Indices: 8020502--8020543 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
8020492 AAATTTAACG
*
8020502 TTCTTTCCTTTTCTTTTCTC
1 TTCTTTCCTTGTCTTTTCTC
* *
8020522 TTCTTTTCTTGTCTTTTTTC
1 TTCTTTCCTTGTCTTTTCTC
8020542 TT
1 TT
8020544 TCGTTCTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.00, C:0.24, G:0.02, T:0.74
Consensus pattern (20 bp):
TTCTTTCCTTGTCTTTTCTC
Found at i:8026825 original size:20 final size:20
Alignment explanation
Indices: 8026797--8026845 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
8026787 TTTTATCTTG
* *
8026797 ATTTTATTTGATTTCAATCA
1 ATTTGATTTGATTTCAAACA
*
8026817 ATTTGATTTGATTTTAAACA
1 ATTTGATTTGATTTCAAACA
*
8026837 AATTGATTT
1 ATTTGATTT
8026846 AATTGCTCCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.33, C:0.06, G:0.08, T:0.53
Consensus pattern (20 bp):
ATTTGATTTGATTTCAAACA
Found at i:8027315 original size:22 final size:23
Alignment explanation
Indices: 8027270--8027318 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
8027260 GATATTTTAA
*
8027270 ATATAAATTATTTATTTTATTTT
1 ATATAAATTACTTATTTTATTTT
8027293 ATATAAA-TACTTA-TTTATATTT
1 ATATAAATTACTTATTTTAT-TTT
8027315 ATAT
1 ATAT
8027319 TTGTTCGCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 5 0.21
22 12 0.50
23 7 0.29
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (23 bp):
ATATAAATTACTTATTTTATTTT
Found at i:8028325 original size:23 final size:23
Alignment explanation
Indices: 8028299--8028345 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
8028289 AATTAAATTT
*
8028299 TTTATTAAAATGTTACATGATTA
1 TTTATTAAAATATTACATGATTA
8028322 TTTATTAAAATATTACATGATTA
1 TTTATTAAAATATTACATGATTA
8028345 T
1 T
8028346 ATATGATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.49
Consensus pattern (23 bp):
TTTATTAAAATATTACATGATTA
Found at i:8029098 original size:21 final size:20
Alignment explanation
Indices: 8029072--8029180 Score: 101
Period size: 21 Copynumber: 5.7 Consensus size: 20
8029062 ATTAACAATG
8029072 TACTTT-TTAAATTTCACGTGT
1 TACTTTCTT-AATTTCAC-TGT
8029093 TACTTTCTTAATTT---TG-
1 TACTTTCTTAATTTCACTGT
*
8029109 TACTTTTTTAATTTCACTTGT
1 TACTTTCTTAATTTCAC-TGT
8029130 TACTTTCTTAATTT---TG-
1 TACTTTCTTAATTTCACTGT
*
8029146 TACTTTTTTAATTTCACTTGT
1 TACTTTCTTAATTTCAC-TGT
8029167 TACTTTCTTAATTT
1 TACTTTCTTAATTT
8029181 TGTAGAGTTT
Statistics
Matches: 73, Mismatches: 4, Indels: 22
0.74 0.04 0.22
Matches are distributed among these distances:
16 26 0.36
17 4 0.05
20 4 0.05
21 37 0.51
22 2 0.03
ACGTcount: A:0.20, C:0.14, G:0.06, T:0.61
Consensus pattern (20 bp):
TACTTTCTTAATTTCACTGT
Found at i:8029111 original size:37 final size:37
Alignment explanation
Indices: 8029070--8029209 Score: 217
Period size: 37 Copynumber: 3.7 Consensus size: 37
8029060 ACATTAACAA
*
8029070 TGTACTTTTTAAATTTCACGTGTTACTTTCTTAATTT
1 TGTACTTTTTAAATTTCACTTGTTACTTTCTTAATTT
*
8029107 TGTACTTTTTTAATTTCACTTGTTACTTTCTTAATTT
1 TGTACTTTTTAAATTTCACTTGTTACTTTCTTAATTT
*
8029144 TGTACTTTTTTAATTTCACTTGTTACTTTCTTAATTT
1 TGTACTTTTTAAATTTCACTTGTTACTTTCTTAATTT
* *
8029181 TGTAGAGTTTTTAAATTTCACATGTTACT
1 TGT--ACTTTTTAAATTTCACTTGTTACT
8029210 AGGAGATTTC
Statistics
Matches: 96, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
37 75 0.78
39 21 0.22
ACGTcount: A:0.21, C:0.13, G:0.08, T:0.58
Consensus pattern (37 bp):
TGTACTTTTTAAATTTCACTTGTTACTTTCTTAATTT
Found at i:8029114 original size:16 final size:16
Alignment explanation
Indices: 8029093--8029184 Score: 76
Period size: 16 Copynumber: 5.1 Consensus size: 16
8029083 TTTCACGTGT
8029093 TACTTTCTTAATTTTG
1 TACTTTCTTAATTTTG
*
8029109 TACTTTTTTAATTTCACTTG
1 TACTTTCTTAA-TT---TTG
8029129 TTACTTTCTTAATTTTG
1 -TACTTTCTTAATTTTG
*
8029146 TACTTTTTTAATTTCACTTG
1 TACTTTCTTAA-TT---TTG
8029166 TTACTTTCTTAATTTTG
1 -TACTTTCTTAATTTTG
8029183 TA
1 TA
8029185 GAGTTTTTAA
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
16 22 0.35
17 10 0.16
20 10 0.16
21 20 0.32
ACGTcount: A:0.20, C:0.13, G:0.05, T:0.62
Consensus pattern (16 bp):
TACTTTCTTAATTTTG
Found at i:8030257 original size:21 final size:22
Alignment explanation
Indices: 8030233--8030276 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
8030223 TACTTTATAT
8030233 AATATATA-TAGTATATAATAA
1 AATATATATTAGTATATAATAA
* *
8030254 AATATATATTATTATATATTAA
1 AATATATATTAGTATATAATAA
8030276 A
1 A
8030277 TACAACAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AATATATATTAGTATATAATAA
Found at i:8032729 original size:15 final size:15
Alignment explanation
Indices: 8032711--8032740 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8032701 TTGTTTTAGC
*
8032711 GCTAATTAACCTAAA
1 GCTAATTAACATAAA
8032726 GCTAATTAACATAAA
1 GCTAATTAACATAAA
8032741 TTTAGGTGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.17, G:0.07, T:0.27
Consensus pattern (15 bp):
GCTAATTAACATAAA
Found at i:8032919 original size:4 final size:4
Alignment explanation
Indices: 8032912--8032942 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
8032902 ATAGTATTTT
8032912 ATTA ATTA ATTA ATTA ATTA ATT- ATTA ATTA
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA
8032943 TATAAACGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
ATTA
Found at i:8033020 original size:22 final size:22
Alignment explanation
Indices: 8032994--8033039 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
8032984 TAATTTCTTT
8032994 TTACTT-TAAATAAT-ATAATTAA
1 TTACTTAT-AATAATAATAA-TAA
8033016 TTACTTATAATAATAATAATAA
1 TTACTTATAATAATAATAATAA
8033038 TT
1 TT
8033040 TAATTCATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (22 bp):
TTACTTATAATAATAATAATAA
Found at i:8033612 original size:29 final size:29
Alignment explanation
Indices: 8033566--8033625 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 29
8033556 GTTAATGATT
*
8033566 TATAAAAATTAAATC-AAATTAAAATTTCA
1 TATAAAAATTAAATCAAAATCAAAA-TTCA
*
8033595 TATATAAAATTATA-CAAAATCAAAATTCA
1 TATA-AAAATTAAATCAAAATCAAAATTCA
8033624 TA
1 TA
8033626 ATTGTGATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 11 0.41
30 16 0.59
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.33
Consensus pattern (29 bp):
TATAAAAATTAAATCAAAATCAAAATTCA
Found at i:8033947 original size:43 final size:42
Alignment explanation
Indices: 8033878--8034206 Score: 360
Period size: 43 Copynumber: 7.7 Consensus size: 42
8033868 CGCTATTATC
* * *
8033878 AACGCTGCTATAGATCATGACATTTAGCGGCGCTTTTCCTACA
1 AACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCC-ACA
* *
8033921 AACGTCGTTATAGATCAGGACCTTTAGCGGCGCTTTCTCCACA
1 AACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTT-TCCACA
* *
8033964 AACGCAGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACA
1 AACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTT-CCACA
* *
8034007 AACGCCGCTATAGATCAAGACCTTTAGAGGCGCTTTTTCCACA
1 AACGCCGCTATAGATCAGGACCTTTAGCGGCGC-TTTTCCACA
* * *
8034050 AACGTCGCTATAGCTC-GAGACCTTTAGCGGCGCTTTTTCCATA
1 AACGCCGCTATAGATCAG-GACCTTTAGCGGCGC-TTTTCCACA
* *
8034093 AACGCCGCTATAGCTC-GAGACCTTTAGCGACGCTTTTCCCACA
1 AACGCCGCTATAGATCAG-GACCTTTAGCGGCGCTTTT-CCACA
* * * *
8034136 AACGCCACTATAGCTC-GAGACCTTTAGCGGCGTTTTTCCCTCA
1 AACGCCGCTATAGATCAG-GACCTTTAGCGGCGCTTTT-CCACA
* *
8034179 AACGCCGCTATAGAACA-AACCTTTAGCG
1 AACGCCGCTATAGATCAGGACCTTTAGCG
8034207 ACGTTTCTCG
Statistics
Matches: 253, Mismatches: 27, Indels: 13
0.86 0.09 0.04
Matches are distributed among these distances:
42 15 0.06
43 231 0.91
44 7 0.03
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (42 bp):
AACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCACA
Found at i:8034023 original size:86 final size:86
Alignment explanation
Indices: 8033878--8034225 Score: 402
Period size: 86 Copynumber: 4.1 Consensus size: 86
8033868 CGCTATTATC
* * * * * *
8033878 AACGCTGCTATAGATCATGACATTTAGCGGCGCTTTTCCTACAAACGTCGTTATAGATCAGGACC
1 AACGCAGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAGGACC
*
8033943 TTTAGCGGCGCTTTCTCCACA
66 TTTAGCGACGCTTTCTCCACA
*
8033964 AACGCAGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAAGACC
1 AACGCAGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAGGACC
* * *
8034029 TTTAGAGGCGCTTTTTCCACA
66 TTTAGCGACGCTTTCTCCACA
* * * * *
8034050 AACGTC-GCTATAGCTCGAGACCTTTAGCGGCGCTTTTTCCATAAACGCCGCTATAGCTC-GAGA
1 AACG-CAGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAG-GA
8034113 CCTTTAGCGACGCTTT-TCCCACA
64 CCTTTAGCGACGCTTTCT-CCACA
* * * * * *
8034136 AACGCCA-CTATAGCTCGAGACCTTTAGCGGCGTTTTTCCCTCAAACGCCGCTATAGAACA-AAC
1 AACG-CAGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAGGAC
*
8034199 CTTTAGCGACG-TTTCTCGCAAA
65 CTTTAGCGACGCTTTCTC-CACA
8034221 AACGC
1 AACGC
8034226 CACTAAAAAC
Statistics
Matches: 229, Mismatches: 26, Indels: 16
0.85 0.10 0.06
Matches are distributed among these distances:
84 5 0.02
85 22 0.10
86 201 0.88
87 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (86 bp):
AACGCAGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAGGACC
TTTAGCGACGCTTTCTCCACA
Found at i:8034114 original size:129 final size:129
Alignment explanation
Indices: 8033878--8034225 Score: 436
Period size: 129 Copynumber: 2.7 Consensus size: 129
8033868 CGCTATTATC
* * * *
8033878 AACGCTGCTATAGATCATGACATTTAGCGGCGC-TTTTCCTACAAACGTCGTTATAGATCAGGAC
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCC-ACAAACGTCGCTATAGATCAGGAC
*
8033942 CTTTAGCGGCGCTTTCTCCACAAACGCAGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACA
65 CTTTAGCGGCGCTTTCTCCACAAACGCAGCTATAGATCAAGACCTTTAGCGACGCTTTTCCCACA
* *
8034007 AACGCCGCTATAGATCAAGACCTTTAGAGGCGCTTTTTCCACAAACGTCGCTATAGCTC-GAGAC
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCCACAAACGTCGCTATAGATCAG-GAC
* * * * *
8034071 CTTTAGCGGCGCTTTTTCCATAAACGCCGCTATAGCTCGAGACCTTTAGCGACGCTTTTCCCACA
65 CTTTAGCGGCGCTTTCTCCACAAACGCAGCTATAGATCAAGACCTTTAGCGACGCTTTTCCCACA
* * * * * * *
8034136 AACGCCACTATAGCTCGAGACCTTTAGCGGCG-TTTTTCCCTCAAACGCCGCTATAGAACA-AAC
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTT-CCACAAACGTCGCTATAGATCAGGAC
* *
8034199 CTTTAGCGACG-TTTCTCGCAAAAACGC
65 CTTTAGCGGCGCTTTCTC-CACAAACGC
8034226 CACTAAAAAC
Statistics
Matches: 190, Mismatches: 24, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
127 5 0.03
128 26 0.14
129 153 0.81
130 6 0.03
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (129 bp):
AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCCACAAACGTCGCTATAGATCAGGACC
TTTAGCGGCGCTTTCTCCACAAACGCAGCTATAGATCAAGACCTTTAGCGACGCTTTTCCCACA
Found at i:8036700 original size:48 final size:49
Alignment explanation
Indices: 8036644--8036742 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
8036634 AAAGTGACTC
8036644 CAAAATTGATCCTATA-TTCATCATTTGCTATCTCCAAGGCATTGAGGT
1 CAAAATTGATCCTATATTTCATCATTTGCTATCTCCAAGGCATTGAGGT
8036692 CAAAATTGATCCTATATTTCATCATTTGCTATCTCCAAGGCATTGAGGT
1 CAAAATTGATCCTATATTTCATCATTTGCTATCTCCAAGGCATTGAGGT
8036741 CA
1 CA
8036743 TTTCAATCAT
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
48 16 0.32
49 34 0.68
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.35
Consensus pattern (49 bp):
CAAAATTGATCCTATATTTCATCATTTGCTATCTCCAAGGCATTGAGGT
Found at i:8038734 original size:19 final size:19
Alignment explanation
Indices: 8038710--8038758 Score: 80
Period size: 19 Copynumber: 2.5 Consensus size: 19
8038700 TAAAATTATA
*
8038710 ATTTTTAGTTTTTGTATTTT
1 ATTTTTA-TTTTTGTATTTC
8038730 ATTTTTATTTTTGTATTTC
1 ATTTTTATTTTTGTATTTC
8038749 ATTTTTATTT
1 ATTTTTATTT
8038759 GTTATAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 21 0.75
20 7 0.25
ACGTcount: A:0.16, C:0.02, G:0.06, T:0.76
Consensus pattern (19 bp):
ATTTTTATTTTTGTATTTC
Found at i:8039121 original size:7 final size:7
Alignment explanation
Indices: 8039105--8039246 Score: 81
Period size: 7 Copynumber: 20.0 Consensus size: 7
8039095 ACTAATTAAT
*
8039105 CTAAAAC
1 CTAAACC
8039112 CTAAACC
1 CTAAACC
8039119 CTAAACC
1 CTAAACC
8039126 CTAAACCC
1 CTAAA-CC
**
8039134 CTATCCC
1 CTAAACC
8039141 CTAAACC
1 CTAAACC
**
8039148 CTAAATT
1 CTAAACC
* *
8039155 ATAAAAC
1 CTAAACC
*
8039162 ATAAATCC
1 CTAAA-CC
*
8039170 CTAACCC
1 CTAAACC
8039177 CT-AACC
1 CTAAACC
8039183 CTTAAACC
1 C-TAAACC
*
8039191 TTAAACC
1 CTAAACC
*
8039198 C-CAACC
1 CTAAACC
*
8039204 TTTAAACC
1 -CTAAACC
*
8039212 ATAAACC
1 CTAAACC
*
8039219 ATAAACC
1 CTAAACC
*
8039226 ATAAACC
1 CTAAACC
* *
8039233 ATAATCC
1 CTAAACC
8039240 CTAAACC
1 CTAAACC
8039247 ATCGGAGTAA
Statistics
Matches: 106, Mismatches: 23, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
6 8 0.08
7 81 0.76
8 17 0.16
ACGTcount: A:0.44, C:0.37, G:0.00, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:8039152 original size:36 final size:36
Alignment explanation
Indices: 8039105--8039232 Score: 98
Period size: 36 Copynumber: 3.6 Consensus size: 36
8039095 ACTAATTAAT
* * *
8039105 CTAAAACCTAAACCCTAAACCCTAAACCCCTATCCC
1 CTAAACCCTAAACCATAAACCCTAAACCCCTAACCC
** * * *
8039141 CTAAACCCTAAATTATAAAACATAAATCCCTAACCC
1 CTAAACCCTAAACCATAAACCCTAAACCCCTAACCC
* * ** *
8039177 CT-AACCCTTAAACCTTAAACCC-CAACCTTTAAACC
1 CTAAACCC-TAAACCATAAACCCTAAACCCCTAACCC
* *
8039212 ATAAACCATAAACCATAAACC
1 CTAAACCCTAAACCATAAACC
8039233 ATAATCCCTA
Statistics
Matches: 69, Mismatches: 21, Indels: 5
0.73 0.22 0.05
Matches are distributed among these distances:
35 26 0.38
36 43 0.62
ACGTcount: A:0.44, C:0.37, G:0.00, T:0.20
Consensus pattern (36 bp):
CTAAACCCTAAACCATAAACCCTAAACCCCTAACCC
Found at i:8040432 original size:82 final size:82
Alignment explanation
Indices: 8040213--8040433 Score: 307
Period size: 82 Copynumber: 2.7 Consensus size: 82
8040203 GCTAAAAATA
* * *
8040213 GAGCATTAGCGGCGCTTTCTCAAAAAATGCCGCTAAAGCCTTGAGCATTAGCGGCACCTCCTCAA
1 GAGCATTAGCGGCGCTTTCTC-AAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCCTCCTCAA
*
8040278 AAATGCCGCTAAAGCCCC
65 AAATGCAGCTAAAGCCCC
* * * * * *
8040296 AAGCATTAACGACGCCTCCTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCCTCCTCAAA
1 GAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCCTCCTCAAA
*
8040361 AATGCAGCTATAGCCCC
66 AATGCAGCTAAAGCCCC
* * *
8040378 GAGCATTAGCGGCGATTTTTCAAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGC
1 GAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGC
8040434 TTTATTAAAA
Statistics
Matches: 118, Mismatches: 20, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
82 102 0.86
83 16 0.14
ACGTcount: A:0.29, C:0.32, G:0.21, T:0.18
Consensus pattern (82 bp):
GAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCCTCCTCAAA
AATGCAGCTAAAGCCCC
Found at i:8040458 original size:41 final size:41
Alignment explanation
Indices: 8040164--8040454 Score: 273
Period size: 41 Copynumber: 7.1 Consensus size: 41
8040154 TAAATTATTT
* * *
8040164 TAAATCCCTGAGCATTAGTGGCGCTTT-TTAGAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCA-AAAACGCCGC
** *
8040205 TAAA--AATAGAGCATTAGCGGCGCTTTCTCAAAAAATGCCGC
1 TAAAGCCCT-GAGCATTAGCGGCGCTTTCTC-AAAAACGCCGC
* * * * *
8040246 TAAAGCCTTGAGCATTAGCGGCACCTCCTCAAAAATGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
** * * * *
8040287 TAAAGCCCCAAGCATTAACGACGCCTCCTCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* * * * *
8040328 TAAAGCCCCGAGCATTAGCGGCGCCTCCTCAAAAATGCAGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* * * *
8040369 TATAGCCCCGAGCATTAGCGGCGATTTTTCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* * *
8040410 TAAATCCCTGAGCATTAGCGGCGCTTTATTAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
8040451 TAAA
1 TAAA
8040455 TCCCCAAAAC
Statistics
Matches: 210, Mismatches: 35, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.00
40 17 0.08
41 172 0.82
42 19 0.09
43 1 0.00
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (41 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
Found at i:8040560 original size:39 final size:40
Alignment explanation
Indices: 8040513--8040628 Score: 128
Period size: 40 Copynumber: 3.0 Consensus size: 40
8040503 CGCTTTCTGG
* *
8040513 AAAA-CGCCGCTAATGCT-TATTTTTAGCGGTGTTTTTCA
1 AAAAGCGCCGCTAATGCTATATCTTTAGCGGCGTTTTTCA
* * * * *
8040551 TAATGCGCCGCTAATGCTATATCTTTAACGACGTTTTCCA
1 AAAAGCGCCGCTAATGCTATATCTTTAGCGGCGTTTTTCA
* **
8040591 AAAAGCGACGCTAATGCTCGATCTTTAGCGGCGTTTTT
1 AAAAGCGCCGCTAATGCTATATCTTTAGCGGCGTTTTT
8040629 TATCCAAACG
Statistics
Matches: 61, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
38 2 0.03
39 13 0.21
40 46 0.75
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (40 bp):
AAAAGCGCCGCTAATGCTATATCTTTAGCGGCGTTTTTCA
Found at i:8047135 original size:3 final size:3
Alignment explanation
Indices: 8047127--8047178 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
8047117 GGTGAGGTGG
8047127 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8047175 -TT AT
1 ATT AT
8047179 ATAGTGGATA
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 46 0.96
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:8047491 original size:9 final size:8
Alignment explanation
Indices: 8047458--8047489 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
8047448 TTACTCGCCT
8047458 TTAAAAAA
1 TTAAAAAA
8047466 TTAAAAAA
1 TTAAAAAA
8047474 TTAAAAAA
1 TTAAAAAA
8047482 TTAAAAAA
1 TTAAAAAA
8047490 ATATAATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (8 bp):
TTAAAAAA
Found at i:8049012 original size:19 final size:21
Alignment explanation
Indices: 8048988--8049043 Score: 75
Period size: 19 Copynumber: 2.9 Consensus size: 21
8048978 TTCCGCCTTG
8048988 TTTTTTAAAT-AATTTT-TAA
1 TTTTTTAAATAAATTTTATAA
8049007 TTTTTTAAATAAATTTTATAA
1 TTTTTTAAATAAATTTTATAA
*
8049028 TTTTCT--ATAAATTTTA
1 TTTTTTAAATAAATTTTA
8049044 AATAAATTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
19 20 0.59
20 6 0.18
21 8 0.24
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTTTAAATAAATTTTATAA
Found at i:8049437 original size:30 final size:30
Alignment explanation
Indices: 8049364--8049437 Score: 80
Period size: 29 Copynumber: 2.5 Consensus size: 30
8049354 CCGAATATAA
*
8049364 TAAATATATATTTTTTTAATTTTATTAATTT
1 TAAA-ATAAATTTTTTTAATTTTATTAATTT
* * *
8049395 TAAAAT-ACTTTTTTATTATTTT-TTATTTT
1 TAAAATAAATTTTTT-TAATTTTATTAATTT
8049424 TAAAATAAATTTTT
1 TAAAATAAATTTTT
8049438 GGTGTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
29 18 0.50
30 14 0.39
31 4 0.11
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (30 bp):
TAAAATAAATTTTTTTAATTTTATTAATTT
Found at i:8051604 original size:21 final size:22
Alignment explanation
Indices: 8051574--8051616 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
8051564 GTGCTTTCTA
*
8051574 TAAAATGAGCT-AGAACATATT
1 TAAAACGAGCTAAGAACATATT
8051595 TAAAACGAGCTACAGAACATAT
1 TAAAACGAGCTA-AGAACATAT
8051617 GTAGATAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 10 0.53
23 9 0.47
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.23
Consensus pattern (22 bp):
TAAAACGAGCTAAGAACATATT
Found at i:8056504 original size:32 final size:32
Alignment explanation
Indices: 8056468--8056544 Score: 100
Period size: 32 Copynumber: 2.4 Consensus size: 32
8056458 TAAAATAAAT
*
8056468 TATGAAAAGTTACGAATGTGAAAAGACTTGAA
1 TATGAAAAGTTACGAATGCGAAAAGACTTGAA
* ** *
8056500 TATGAAGAGTTAATAATGCGAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCGAAAAGACTTGAA
*
8056532 GATGAAAAGTTAC
1 TATGAAAAGTTAC
8056545 ACACATGCAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.45, C:0.06, G:0.23, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCGAAAAGACTTGAA
Found at i:8056639 original size:36 final size:38
Alignment explanation
Indices: 8056553--8056639 Score: 115
Period size: 36 Copynumber: 2.3 Consensus size: 38
8056543 ACACACATGC
* * *
8056553 ATGAATAGTCACAACTCCTATAGTATTTAAGTTATGTAA
1 ATGAATAGTCACAACTCC-ATAGCATTTAAGTGATATAA
*
8056592 ATGAATAGTCACAACTCC-TAGCATTT-AGTGATATAG
1 ATGAATAGTCACAACTCCATAGCATTTAAGTGATATAA
8056628 ATGAATAGTCAC
1 ATGAATAGTCAC
8056640 TTACAACTCC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
36 19 0.43
37 7 0.16
39 18 0.41
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (38 bp):
ATGAATAGTCACAACTCCATAGCATTTAAGTGATATAA
Found at i:8061146 original size:36 final size:38
Alignment explanation
Indices: 8061060--8061146 Score: 115
Period size: 36 Copynumber: 2.3 Consensus size: 38
8061050 ACACACATGC
* * *
8061060 ATGAATAGTCACAACTCCTACAGTATTTAAGTTATGTAA
1 ATGAATAGTCACAACTCCTA-AGCATTTAAGTGATATAA
*
8061099 ATGAATAGTCACAACTCCT-AGCATTT-AGTGATATAG
1 ATGAATAGTCACAACTCCTAAGCATTTAAGTGATATAA
8061135 ATGAATAGTCAC
1 ATGAATAGTCAC
8061147 TTACAACTCC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
36 19 0.43
37 6 0.14
39 19 0.43
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (38 bp):
ATGAATAGTCACAACTCCTAAGCATTTAAGTGATATAA
Found at i:8062371 original size:20 final size:20
Alignment explanation
Indices: 8062343--8062380 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8062333 GGATCACCTC
*
8062343 AAATTTTAATAATT-TTAATA
1 AAATGTTAA-AATTATTAATA
8062363 AAATGTTAAAATTATTAA
1 AAATGTTAAAATTATTAA
8062381 AACGATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (20 bp):
AAATGTTAAAATTATTAATA
Found at i:8062864 original size:26 final size:26
Alignment explanation
Indices: 8062834--8062883 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
8062824 TTCAAATTGT
8062834 TAAATATACGTTACATGAAATGAAAC
1 TAAATATACGTTACATGAAATGAAAC
8062860 TAAATATACGTTACATGAAATGAA
1 TAAATATACGTTACATGAAATGAA
8062884 CATAGCTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.28
Consensus pattern (26 bp):
TAAATATACGTTACATGAAATGAAAC
Found at i:8067257 original size:126 final size:126
Alignment explanation
Indices: 8067117--8067407 Score: 483
Period size: 126 Copynumber: 2.3 Consensus size: 126
8067107 TAATTTAAAA
*
8067117 AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGCTCCTAAAAAAATAATTTTGAGAAGACGTTT
1 AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGCTCCTAAAAAAATAATTTCGAGAAGACGTTT
* * *
8067182 CTGAGTAAATAGTGTCAAAAACGCTTTAAGCGAGATGCTTTGTCAGCAAAAGTACTGAAAG
66 CTAAGAAAATAGTGTCAAAAACGCTTTAAGCAAGATGCTTTGTCAGCAAAAGTACTGAAAG
* * * * * * *
8067243 AAGCTCCCATGTGGACGCGCTTTTGCTACAGTGGCTCCTGAAACAATAATTTCGAGTAGATGTTT
1 AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGCTCCTAAAAAAATAATTTCGAGAAGACGTTT
8067308 CTAAGAAAATAGTGTCAAAAACGCTTTAAGCAAGATGCTTTGTCAGCAAAAGTACTGAAAG
66 CTAAGAAAATAGTGTCAAAAACGCTTTAAGCAAGATGCTTTGTCAGCAAAAGTACTGAAAG
8067369 AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGCTCCT
1 AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGCTCCT
8067408 TTTTGGCCTG
Statistics
Matches: 151, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
126 151 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (126 bp):
AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGCTCCTAAAAAAATAATTTCGAGAAGACGTTT
CTAAGAAAATAGTGTCAAAAACGCTTTAAGCAAGATGCTTTGTCAGCAAAAGTACTGAAAG
Found at i:8072961 original size:30 final size:30
Alignment explanation
Indices: 8072925--8072989 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
8072915 GCAAAAAAAA
* *
8072925 CTCTCAAATTTCTCCCTAGATTTCTTAAAG
1 CTCTCAAATTTCTCCCTAAATTTCTCAAAG
*
8072955 CTCTCAAATTTCTCCTTAAATTTCTCAAAG
1 CTCTCAAATTTCTCCCTAAATTTCTCAAAG
8072985 CTCTC
1 CTCTC
8072990 TTTAATTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.29, G:0.05, T:0.40
Consensus pattern (30 bp):
CTCTCAAATTTCTCCCTAAATTTCTCAAAG
Found at i:8076407 original size:126 final size:126
Alignment explanation
Indices: 8076237--8076508 Score: 404
Period size: 126 Copynumber: 2.2 Consensus size: 126
8076227 TAAGGCCAAA
* *
8076237 CAGGAACTACTGTAGAAAAGGAGCGTCCACGTGGGAGCTTTTTTCA-TCAATTTTGCTGACAGTG
1 CAGGAACTATTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGT-AATTTTGCTGACAGTG
* * **
8076301 CATCTTGCTTGAAGTGTTTTTGACACTATTTATTCAGAACCGTC-TTCTTAAAATTATTTTTT
65 CATCCTGCTTGAAGCGTTTTTGACACTATTTATTCAGAAAAGTCTTTC-TAAAATTATTTTTT
* * * *
8076363 TAGGAACTATTATAGAAAAAGAGCGTCTATGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
1 CAGGAACTATTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
*
8076428 ATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAAAGTCTTTCTAAAATTATTTTTT
66 ATCCTGCTTGAAGCGTTTTTGACACTATTTATTCAGAAAAGTCTTTCTAAAATTATTTTTT
*
8076489 CAGAAACTATTGTAGAAAAA
1 CAGGAACTATTGTAGAAAAA
8076509 AACCAAAATC
Statistics
Matches: 130, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
126 126 0.97
127 4 0.03
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.38
Consensus pattern (126 bp):
CAGGAACTATTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
ATCCTGCTTGAAGCGTTTTTGACACTATTTATTCAGAAAAGTCTTTCTAAAATTATTTTTT
Found at i:8092602 original size:16 final size:16
Alignment explanation
Indices: 8092581--8092627 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 16
8092571 TTTTTTGTGG
*
8092581 TATAAATTACATAATA
1 TATAAATAACATAATA
8092597 TATAAAAATAACATAATA
1 TAT--AAATAACATAATA
*
8092615 TA-AAATATCATAA
1 TATAAATAACATAA
8092628 ACTTAAAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 10 0.37
16 3 0.11
18 14 0.52
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (16 bp):
TATAAATAACATAATA
Found at i:8106605 original size:17 final size:17
Alignment explanation
Indices: 8106583--8106633 Score: 75
Period size: 17 Copynumber: 3.0 Consensus size: 17
8106573 CGTGGTAGTT
8106583 AAAAAAAGGTATAATGA
1 AAAAAAAGGTATAATGA
* *
8106600 AAAAAAGGGTATGATGA
1 AAAAAAAGGTATAATGA
*
8106617 AAAAAATGGTATAATGA
1 AAAAAAAGGTATAATGA
8106634 CAAATTTAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.59, C:0.00, G:0.22, T:0.20
Consensus pattern (17 bp):
AAAAAAAGGTATAATGA
Found at i:8115041 original size:3 final size:3
Alignment explanation
Indices: 8115033--8115063 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
8115023 AAAGCTCACC
*
8115033 TTG TTG TTG TTG TTG TTG TTG CTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
8115064 GATTTGCCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.03, G:0.32, T:0.65
Consensus pattern (3 bp):
TTG
Found at i:8120149 original size:5 final size:5
Alignment explanation
Indices: 8120098--8120293 Score: 122
Period size: 5 Copynumber: 38.8 Consensus size: 5
8120088 TATATTGGAA
* * * * *
8120098 CATAT CTTAT CATAC CAAAG CATAT CATAAAT CATAT CATAT CATAT AATAT
1 CATAT CATAT CATAT CATAT CATAT CAT--AT CATAT CATAT CATAT CATAT
* * * * * * *
8120150 CATAT AATAT AATAT CATAT CATAT CACAT CACAT CACAT CACAT CACAT
1 CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT
* * * * * * * * * *
8120200 CACAT CACAT CACAT CACAT CACAT CACAT CACAT CACAT CACAT CACAT
1 CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT
* * * * * *
8120250 CACAT CACAT CACAT CACAT CACAT CATGT CATAT CATAT CATA
1 CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATA
8120294 CAAAGTCCTA
Statistics
Matches: 174, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
5 169 0.97
7 5 0.03
ACGTcount: A:0.42, C:0.29, G:0.01, T:0.28
Consensus pattern (5 bp):
CATAT
Found at i:8120175 original size:10 final size:10
Alignment explanation
Indices: 8120163--8120276 Score: 210
Period size: 10 Copynumber: 11.4 Consensus size: 10
8120153 ATAATATAAT
* *
8120163 ATCATATCAT
1 ATCACATCAC
8120173 ATCACATCAC
1 ATCACATCAC
8120183 ATCACATCAC
1 ATCACATCAC
8120193 ATCACATCAC
1 ATCACATCAC
8120203 ATCACATCAC
1 ATCACATCAC
8120213 ATCACATCAC
1 ATCACATCAC
8120223 ATCACATCAC
1 ATCACATCAC
8120233 ATCACATCAC
1 ATCACATCAC
8120243 ATCACATCAC
1 ATCACATCAC
8120253 ATCACATCAC
1 ATCACATCAC
8120263 ATCACATCAC
1 ATCACATCAC
8120273 ATCA
1 ATCA
8120277 TGTCATATCA
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
10 102 1.00
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.22
Consensus pattern (10 bp):
ATCACATCAC
Found at i:8120286 original size:15 final size:15
Alignment explanation
Indices: 8120163--8120276 Score: 210
Period size: 15 Copynumber: 7.6 Consensus size: 15
8120153 ATAATATAAT
* *
8120163 ATCATATCATATCAC
1 ATCACATCACATCAC
8120178 ATCACATCACATCAC
1 ATCACATCACATCAC
8120193 ATCACATCACATCAC
1 ATCACATCACATCAC
8120208 ATCACATCACATCAC
1 ATCACATCACATCAC
8120223 ATCACATCACATCAC
1 ATCACATCACATCAC
8120238 ATCACATCACATCAC
1 ATCACATCACATCAC
8120253 ATCACATCACATCAC
1 ATCACATCACATCAC
8120268 ATCACATCA
1 ATCACATCA
8120277 TGTCATATCA
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
15 97 1.00
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.22
Consensus pattern (15 bp):
ATCACATCACATCAC
Found at i:8123859 original size:14 final size:14
Alignment explanation
Indices: 8123840--8123866 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8123830 ACATTTTTAA
8123840 AAATATTTATTTTT
1 AAATATTTATTTTT
8123854 AAATATTTATTTT
1 AAATATTTATTTT
8123867 GAATTTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
AAATATTTATTTTT
Found at i:8129121 original size:2 final size:2
Alignment explanation
Indices: 8129114--8129143 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8129104 AATCTTGGCA
8129114 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8129144 TAGATTTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8130675 original size:29 final size:30
Alignment explanation
Indices: 8130614--8130676 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 30
8130604 ATAATTGTTT
* *
8130614 ATTTTTATATATATTTTTTTATTTTTAGGA
1 ATTTTTATATATATTTTTTTAATTTTAGAA
*
8130644 ATTTTT-TTTATATTTTTTTAGATTTTA-AA
1 ATTTTTATATATATTTTTTTA-ATTTTAGAA
8130673 ATTT
1 ATTT
8130677 AAGTTTAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 18 0.62
30 11 0.38
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (30 bp):
ATTTTTATATATATTTTTTTAATTTTAGAA
Found at i:8142459 original size:13 final size:13
Alignment explanation
Indices: 8142441--8142465 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8142431 TAAATTATCC
8142441 TTTATAGAAATTA
1 TTTATAGAAATTA
8142454 TTTATAGAAATT
1 TTTATAGAAATT
8142466 GCTATACTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TTTATAGAAATTA
Found at i:8165843 original size:28 final size:27
Alignment explanation
Indices: 8165810--8165908 Score: 119
Period size: 28 Copynumber: 3.6 Consensus size: 27
8165800 TAATGAGATT
8165810 AGCACTAAGTGTGCGAGTTTAATTGAA
1 AGCACTAAGTGTGCGAGTTTAATTGAA
* **
8165837 ATGCACTAAGTGTGCGAGTATAAGGGTAA
1 A-GCACTAAGTGTGCGAGTTTAATTG-AA
*
8165866 AGCACTAAGTGTGCGAGTTTGATT-ATTA
1 AGCACTAAGTGTGCGAGTTTAATTGA--A
8165894 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
8165909 TACTTATTAA
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
26 1 0.02
27 1 0.02
28 56 0.92
29 3 0.05
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTTAATTGAA
Found at i:8166272 original size:190 final size:190
Alignment explanation
Indices: 8165949--8166332 Score: 768
Period size: 190 Copynumber: 2.0 Consensus size: 190
8165939 ATATCGAGTA
8165949 GTTGATTTATCGAGAAATCATGAGTAATAAAGTGAGTAATAATTATTTTGGTGGTATTCAAGATT
1 GTTGATTTATCGAGAAATCATGAGTAATAAAGTGAGTAATAATTATTTTGGTGGTATTCAAGATT
8166014 AAGTTTTGTAAGCTAAAGGTAAGATGATTTAGAAGTATGAATTGGTTAAATATTATTCTAGATGT
66 AAGTTTTGTAAGCTAAAGGTAAGATGATTTAGAAGTATGAATTGGTTAAATATTATTCTAGATGT
8166079 CAAGTTAAATTGTAGAGTTTATTTGCTTGTAACTTACTAAGCTAAATTAGCTTACAATGT
131 CAAGTTAAATTGTAGAGTTTATTTGCTTGTAACTTACTAAGCTAAATTAGCTTACAATGT
8166139 GTTGATTTATCGAGAAATCATGAGTAATAAAGTGAGTAATAATTATTTTGGTGGTATTCAAGATT
1 GTTGATTTATCGAGAAATCATGAGTAATAAAGTGAGTAATAATTATTTTGGTGGTATTCAAGATT
8166204 AAGTTTTGTAAGCTAAAGGTAAGATGATTTAGAAGTATGAATTGGTTAAATATTATTCTAGATGT
66 AAGTTTTGTAAGCTAAAGGTAAGATGATTTAGAAGTATGAATTGGTTAAATATTATTCTAGATGT
8166269 CAAGTTAAATTGTAGAGTTTATTTGCTTGTAACTTACTAAGCTAAATTAGCTTACAATGT
131 CAAGTTAAATTGTAGAGTTTATTTGCTTGTAACTTACTAAGCTAAATTAGCTTACAATGT
8166329 GTTG
1 GTTG
8166333 GATTATTGTT
Statistics
Matches: 194, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
190 194 1.00
ACGTcount: A:0.35, C:0.06, G:0.20, T:0.39
Consensus pattern (190 bp):
GTTGATTTATCGAGAAATCATGAGTAATAAAGTGAGTAATAATTATTTTGGTGGTATTCAAGATT
AAGTTTTGTAAGCTAAAGGTAAGATGATTTAGAAGTATGAATTGGTTAAATATTATTCTAGATGT
CAAGTTAAATTGTAGAGTTTATTTGCTTGTAACTTACTAAGCTAAATTAGCTTACAATGT
Found at i:8166871 original size:22 final size:22
Alignment explanation
Indices: 8166845--8166918 Score: 96
Period size: 24 Copynumber: 3.2 Consensus size: 22
8166835 TGTGTTATAA
8166845 TTTGATGTATAATGCTGTCCAT
1 TTTGATGTATAATGCTGTCCAT
8166867 TTTGA-GTATATTGATGCTGTCCAT
1 TTTGATGTATA---ATGCTGTCCAT
*
8166891 TTTAATGTATAATGCTGTCCAAT
1 TTTGATGTATAATGCTGTCC-AT
8166914 TTTGA
1 TTTGA
8166919 GNNNNNNNNN
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
21 5 0.11
22 14 0.31
23 6 0.13
24 15 0.33
25 5 0.11
ACGTcount: A:0.24, C:0.12, G:0.18, T:0.46
Consensus pattern (22 bp):
TTTGATGTATAATGCTGTCCAT
Found at i:8166888 original size:24 final size:21
Alignment explanation
Indices: 8166845--8166919 Score: 87
Period size: 22 Copynumber: 3.3 Consensus size: 21
8166835 TGTGTTATAA
8166845 TTTGATGTATAATGCTGTCCAT
1 TTTGA-GTATAATGCTGTCCAT
8166867 TTTGAGTATATTGATGCTGTCCAT
1 TTTGAGTATA---ATGCTGTCCAT
*
8166891 TTTAATGTATAATGCTGTCCAAT
1 TTTGA-GTATAATGCTGTCC-AT
8166914 TTTGAG
1 TTTGAG
8166920 NNNNNNNNNN
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
21 5 0.11
22 15 0.33
23 6 0.13
24 15 0.33
25 5 0.11
ACGTcount: A:0.24, C:0.12, G:0.19, T:0.45
Consensus pattern (21 bp):
TTTGAGTATAATGCTGTCCAT
Found at i:8174588 original size:47 final size:47
Alignment explanation
Indices: 8174511--8174838 Score: 302
Period size: 47 Copynumber: 7.0 Consensus size: 47
8174501 TTATAATTTG
*
8174511 ATGTATAATGCTGTCC-ATTTTGAGTATATTGATGATGTCCATTTTA
1 ATGTATAATGCTGTCCAATTTTGAGTATATTGATGCTGTCCATTTTA
* * *
8174557 ATGTATAATGCTATCCAATTTTGAGTGTATTGATGTTGTCCATTTTA
1 ATGTATAATGCTGTCCAATTTTGAGTATATTGATGCTGTCCATTTTA
* *
8174604 ATGTATAATGCTGTCCAATTTTAAGTATATTGATGCTGCCCATTTTA
1 ATGTATAATGCTGTCCAATTTTGAGTATATTGATGCTGTCCATTTTA
*
8174651 ATGTATAATGCTGTCCAATTTTGAGTGTATTGATGCTGTCCAATTTTA
1 ATGTATAATGCTGTCCAATTTTGAGTATATTGATGCTGTCC-ATTTTA
* * * * *
8174699 A-GTATATTGATGCTG-CCCATTTT-AATTTA-TAATGCTGTCAAATTTTGA
1 ATGTATA---ATGCTGTCCAATTTTGAGTATATTGATGCTGTC-CATTTT-A
* * * * *
8174747 GTGTATTGATGCTGTCC-ATTTTTAGTGTA-TAATGCTGTCCGATTTTA
1 ATGTA-TAATGCTGTCCAATTTTGAGTATATTGATGCTGTCC-ATTTTA
*
8174794 A-GTATATTGATGCTGTCTAA-TTTGATGTATA---ATGCTGTCCATTTT
1 ATGTATA---ATGCTGTCCAATTTTGA-GTATATTGATGCTGTCCATTTT
8174839 GAGCATATTA
Statistics
Matches: 239, Mismatches: 26, Indels: 34
0.80 0.09 0.11
Matches are distributed among these distances:
45 1 0.00
46 23 0.10
47 148 0.62
48 45 0.19
49 15 0.06
50 7 0.03
ACGTcount: A:0.25, C:0.12, G:0.17, T:0.45
Consensus pattern (47 bp):
ATGTATAATGCTGTCCAATTTTGAGTATATTGATGCTGTCCATTTTA
Found at i:8174694 original size:72 final size:70
Alignment explanation
Indices: 8174511--8174882 Score: 332
Period size: 72 Copynumber: 5.3 Consensus size: 70
8174501 TTATAATTTG
* * *
8174511 ATGTATAATGCTGTCC-ATTTTGAGTATATTGATGATGTCCATTTTAATGTATA--ATGCTATCC
1 ATGTATAATGCTGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAA-GTATATTATGCT-GCC
*
8174573 AATTTTGA
64 CATTTT-A
* * * * *
8174581 GTGTATTGATGTTGTCC-ATTTT-AATGTA-TAATGCTGTCCAATTTTAAGTATATTGATGCTGC
1 ATGTA-TAATGCTGTCCAATTTTGAGTGTATTGATGCTGTCC-ATTTTAAGTATATT-ATGCTGC
8174643 CCATTTTA
63 CCATTTTA
8174651 ATGTATAATGCTGTCCAATTTTGAGTGTATTGATGCTGTCCAATTTTAAGTATATTGATGCTGCC
1 ATGTATAATGCTGTCCAATTTTGAGTGTATTGATGCTGTCC-ATTTTAAGTATATT-ATGCTGCC
8174716 CATTTTA
64 CATTTTA
* * * * * *
8174723 ATTTATAATGCTGTCAAATTTTGAGTGTATTGATGCTGTCCATTTTTAGTGTATAATGCTGTCCG
1 ATGTATAATGCTGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAAGTATATTATGCTG-CCC
8174788 ATTTTA
65 ATTTTA
* * * *
8174794 A-GTATATTGATGCTGTCTAA-TTTGA-TGTA-TAATGCTGTCCATTTTGAGCATATTATTGCTG
1 ATGTATA---ATGCTGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAAGTATATTA-TGCTG
* * *
8174855 TCCAATTTG
62 CCCATTTTA
* *
8174864 CTGAATAATCGCTGTCCAA
1 ATGTATAAT-GCTGTCCAA
8174883 AACAGGGTTG
Statistics
Matches: 253, Mismatches: 34, Indels: 31
0.80 0.11 0.10
Matches are distributed among these distances:
68 2 0.01
69 31 0.12
70 61 0.24
71 59 0.23
72 90 0.36
73 10 0.04
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.44
Consensus pattern (70 bp):
ATGTATAATGCTGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAAGTATATTATGCTGCCCA
TTTTA
Found at i:8174809 original size:25 final size:25
Alignment explanation
Indices: 8174518--8174862 Score: 277
Period size: 25 Copynumber: 14.6 Consensus size: 25
8174508 TTGATGTATA
*
8174518 ATGCTGTCC-ATTTTGAGTATATTG
1 ATGCTGTCCAATTTTAAGTATATTG
*
8174542 ATGATGTCC-ATTTTAATGTATA---
1 ATGCTGTCCAATTTTAA-GTATATTG
* * *
8174564 ATGCTATCCAATTTTGAGTGTATTG
1 ATGCTGTCCAATTTTAAGTATATTG
*
8174589 ATGTTGTCC-ATTTTAATGTATA---
1 ATGCTGTCCAATTTTAA-GTATATTG
8174611 ATGCTGTCCAATTTTAAGTATATTG
1 ATGCTGTCCAATTTTAAGTATATTG
*
8174636 ATGCTG-CCCATTTTAATGTATA---
1 ATGCTGTCCAATTTTAA-GTATATTG
* *
8174658 ATGCTGTCCAATTTTGAGTGTATTG
1 ATGCTGTCCAATTTTAAGTATATTG
8174683 ATGCTGTCCAATTTTAAGTATATTG
1 ATGCTGTCCAATTTTAAGTATATTG
* * *
8174708 ATGCTG-CCCATTTTAA-TTTA-TA
1 ATGCTGTCCAATTTTAAGTATATTG
* * *
8174730 ATGCTGTCAAATTTTGAGTGTATTG
1 ATGCTGTCCAATTTTAAGTATATTG
* * *
8174755 ATGCTGTCC-ATTTTTAGTGTA-TA
1 ATGCTGTCCAATTTTAAGTATATTG
*
8174778 ATGCTGTCCGATTTTAAGTATATTG
1 ATGCTGTCCAATTTTAAGTATATTG
* * *
8174803 ATGCTGTCTAATTTGATGTATA---
1 ATGCTGTCCAATTTTAAGTATATTG
* *
8174825 ATGCTGTCC-ATTTTGAGCATATT-
1 ATGCTGTCCAATTTTAAGTATATTG
8174848 ATTGCTGTCCAATTT
1 A-TGCTGTCCAATTT
8174863 GCTGAATAAT
Statistics
Matches: 257, Mismatches: 40, Indels: 47
0.75 0.12 0.14
Matches are distributed among these distances:
21 8 0.03
22 49 0.19
23 42 0.16
24 70 0.27
25 88 0.34
ACGTcount: A:0.25, C:0.13, G:0.17, T:0.45
Consensus pattern (25 bp):
ATGCTGTCCAATTTTAAGTATATTG
Found at i:8174878 original size:47 final size:46
Alignment explanation
Indices: 8174658--8174881 Score: 180
Period size: 47 Copynumber: 4.7 Consensus size: 46
8174648 TTAATGTATA
* * *
8174658 ATGCTGTCCAATTTTGAGTGTATTGATGCTGTCCAATTTTAAGTATATTG
1 ATGCTGTCCAA-TTTGA-TG-AATAATGCTGTCC-ATTTTAAGCATATTG
* * * ** * * **
8174708 ATGCTGCCCATTTTAATTTATAATGCTGTCAAATTTTGAGTGTATTG
1 ATGCTGTCCAATTTGATGAATAATGCTGTC-CATTTTAAGCATATTG
* * * *
8174755 ATGCTGTCCATTTTTAGTGTATAATGCTGTCCGATTTTAAGTATATTG
1 ATGCTGTCCAATTTGA-TGAATAATGCTGTCC-ATTTTAAGCATATTG
* * *
8174803 ATGCTGTCTAATTTGATGTATAATGCTGTCCATTTTGAGCATATT-
1 ATGCTGTCCAATTTGATGAATAATGCTGTCCATTTTAAGCATATTG
*
8174848 ATTGCTGTCCAATTTGCTGAATAATCGCTGTCCA
1 A-TGCTGTCCAATTTGATGAATAAT-GCTGTCCA
8174882 AAACAGGGTT
Statistics
Matches: 145, Mismatches: 24, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 32 0.22
47 59 0.41
48 40 0.28
49 4 0.03
50 9 0.06
ACGTcount: A:0.24, C:0.14, G:0.18, T:0.43
Consensus pattern (46 bp):
ATGCTGTCCAATTTGATGAATAATGCTGTCCATTTTAAGCATATTG
Found at i:8181304 original size:9 final size:9
Alignment explanation
Indices: 8181292--8181330 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
8181282 ATTATTATTA
8181292 TTTCTTTAT
1 TTTCTTTAT
8181301 TTTCTTTA-
1 TTTCTTTAT
*
8181309 TTACTTTAT
1 TTTCTTTAT
8181318 TTTCTTTTAT
1 TTTC-TTTAT
8181328 TTT
1 TTT
8181331 AGTTATTTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
8 7 0.27
9 11 0.42
10 8 0.31
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTCTTTAT
Found at i:8181309 original size:17 final size:18
Alignment explanation
Indices: 8181289--8181329 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
8181279 ATTATTATTA
8181289 TTATTTCTTTATTTTC-T
1 TTATTTCTTTATTTTCTT
*
8181306 TTATTACTTTATTTTCTT
1 TTATTTCTTTATTTTCTT
8181324 TTATTT
1 TTATTT
8181330 TAGTTATTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.76
Consensus pattern (18 bp):
TTATTTCTTTATTTTCTT
Found at i:8183481 original size:8 final size:8
Alignment explanation
Indices: 8183468--8183507 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
8183458 TCCCGATTGC
8183468 ATGTTTGT
1 ATGTTTGT
8183476 ATGTTTGT
1 ATGTTTGT
*
8183484 ATGGTT-T
1 ATGTTTGT
8183491 -TGTTTGT
1 ATGTTTGT
8183498 ATGTTTGT
1 ATGTTTGT
8183506 AT
1 AT
8183508 TGCTCATTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 4 0.14
7 2 0.07
8 22 0.79
ACGTcount: A:0.12, C:0.00, G:0.25, T:0.62
Consensus pattern (8 bp):
ATGTTTGT
Found at i:8185401 original size:15 final size:15
Alignment explanation
Indices: 8185366--8185417 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
8185356 TTAAGAATTT
*
8185366 TATTAAATTAT-ATA
1 TATTTAATTATAATA
8185380 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
8185394 TATTTAATAATAAT-
1 TATTTAATTATAATA
8185408 TATGTTAATT
1 TAT-TTAATT
8185418 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:8185426 original size:120 final size:120
Alignment explanation
Indices: 8185211--8185786 Score: 1046
Period size: 120 Copynumber: 4.8 Consensus size: 120
8185201 AGAAATTGTA
* * * * *
8185211 TAAATTCGTATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATT-ATTATAATAT
1 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATT-TTAATTATAATAT
8185275 ATTTAATAATAATTATGTTAATTTATCTTTTATAGTATCATATATTATGATTTGAG
65 ATTTAATAATAATTATGTTAATTTATCTTTTATAGTATCATATATTATGATTTGAG
8185331 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
1 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
* *
8185396 TTTAATAATAATTATGTTAATTTATATTTTATAGTATCAAATATTATGATTTGAG
66 TTTAATAATAATTATGTTAATTTATCTTTTATAGTATCATATATTATGATTTGAG
8185451 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
1 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
*
8185516 TTTAATAATAATTATCTTAATTTATCTTTTATAGTATCATATATTATGATTTGAG
66 TTTAATAATAATTATGTTAATTTATCTTTTATAGTATCATATATTATGATTTGAG
8185571 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
1 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
* *
8185636 TTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGGTTTGAG
66 TTTAATAATAATTATGTTAATTTATCTTTTATAGTATCATATATTATGATTTGAG
8185691 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
1 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
8185756 TTTAATAATAATTATGTTAATTTATCTTTTA
66 TTTAATAATAATTATGTTAATTTATCTTTTA
8185787 ATTATTTATT
Statistics
Matches: 441, Mismatches: 14, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
119 2 0.00
120 439 1.00
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (120 bp):
TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
TTTAATAATAATTATGTTAATTTATCTTTTATAGTATCATATATTATGATTTGAG
Found at i:8185521 original size:15 final size:15
Alignment explanation
Indices: 8185486--8185537 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
8185476 TTAAGAATTT
*
8185486 TATTAAATTAT-ATA
1 TATTTAATTATAATA
8185500 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
8185514 TATTTAATAATAAT-
1 TATTTAATTATAATA
8185528 TATCTTAATT
1 TAT-TTAATT
8185538 TATCTTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:8185641 original size:15 final size:15
Alignment explanation
Indices: 8185606--8185657 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
8185596 TTAAGAATTT
*
8185606 TATTAAATTAT-ATA
1 TATTTAATTATAATA
8185620 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
8185634 TATTTAATAATAAT-
1 TATTTAATTATAATA
8185648 TATGTTAATT
1 TAT-TTAATT
8185658 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:8185761 original size:15 final size:15
Alignment explanation
Indices: 8185726--8185777 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
8185716 TTAAGAATTT
*
8185726 TATTAAATTAT-ATA
1 TATTTAATTATAATA
8185740 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
8185754 TATTTAATAATAAT-
1 TATTTAATTATAATA
8185768 TATGTTAATT
1 TAT-TTAATT
8185778 TATCTTTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:8186010 original size:45 final size:44
Alignment explanation
Indices: 8185903--8186012 Score: 122
Period size: 45 Copynumber: 2.6 Consensus size: 44
8185893 TTTTCCATTA
8185903 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * * ***
8185942 TACTACTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
8185987 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
8186013 CCTCTATTCC
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
39 15 0.27
40 1 0.02
44 16 0.29
45 24 0.43
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:8186012 original size:16 final size:16
Alignment explanation
Indices: 8185991--8186044 Score: 90
Period size: 16 Copynumber: 3.4 Consensus size: 16
8185981 TTGATTTGCT
8185991 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
8186007 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
8186023 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
*
8186039 AATACA
1 ATTACA
8186045 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.28, C:0.35, G:0.02, T:0.35
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:8189710 original size:18 final size:18
Alignment explanation
Indices: 8189684--8189718 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8189674 GTTTTTCACT
8189684 AAGTAAAGGTTCAATAAC
1 AAGTAAAGGTTCAATAAC
*
8189702 AAGTGAAGGTTCAATAA
1 AAGTAAAGGTTCAATAA
8189719 TTCATTTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.09, G:0.20, T:0.23
Consensus pattern (18 bp):
AAGTAAAGGTTCAATAAC
Found at i:8189806 original size:17 final size:17
Alignment explanation
Indices: 8189784--8189817 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8189774 GAACGTTTTC
*
8189784 ATAATATATATAATGCT
1 ATAATATATAAAATGCT
8189801 ATAATATATAAAATGCT
1 ATAATATATAAAATGCT
8189818 CTGAGGCATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (17 bp):
ATAATATATAAAATGCT
Found at i:8200955 original size:13 final size:13
Alignment explanation
Indices: 8200937--8200962 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8200927 TCATTCATAC
8200937 CCAGTAAACATTT
1 CCAGTAAACATTT
8200950 CCAGTAAACATTT
1 CCAGTAAACATTT
8200963 AACATTCATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (13 bp):
CCAGTAAACATTT
Found at i:8214397 original size:16 final size:16
Alignment explanation
Indices: 8214376--8214436 Score: 68
Period size: 16 Copynumber: 3.7 Consensus size: 16
8214366 GAGTTATATA
8214376 TAAGTTGTGTATTATG
1 TAAGTTGTGTATTATG
* * *
8214392 TAAGTTTTTTAAGTTATA
1 TAAGTTGTGT-A-TTATG
8214410 TAAGTTGTGTATTATG
1 TAAGTTGTGTATTATG
*
8214426 TAAGTTATGTA
1 TAAGTTGTGTA
8214437 AGTCTGACAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
16 22 0.61
17 2 0.06
18 12 0.33
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.51
Consensus pattern (16 bp):
TAAGTTGTGTATTATG
Found at i:8214433 original size:9 final size:9
Alignment explanation
Indices: 8214387--8214635 Score: 120
Period size: 9 Copynumber: 28.6 Consensus size: 9
8214377 AAGTTGTGTA
8214387 TTATGTAAG
1 TTATGTAAG
* *
8214396 TTTTTTAAG
1 TTATGTAAG
*
8214405 TTATATAAG
1 TTATGTAAG
*
8214414 TTGTGT-A-
1 TTATGTAAG
8214421 TTATGTAAG
1 TTATGTAAG
8214430 TTATGTAAG
1 TTATGTAAG
* *
8214439 -TCTGACAAG
1 TTATG-TAAG
*
8214448 TTATGTTTAG
1 TTATG-TAAG
8214458 -TAT-TAA-
1 TTATGTAAG
8214464 TTAAT-TAAG
1 TT-ATGTAAG
8214473 TTATGTAAG
1 TTATGTAAG
*
8214482 TTGTGTAAG
1 TTATGTAAG
*
8214491 TTGTGT-A-
1 TTATGTAAG
8214498 TTATGTAAG
1 TTATGTAAG
8214507 TTATGTAAG
1 TTATGTAAG
* *
8214516 -TCTGACAAG
1 TTATG-TAAG
*
8214525 TTATGTTTAG
1 TTATG-TAAG
8214535 -TAT-TAA-
1 TTATGTAAG
8214541 TTAAT-TAAG
1 TT-ATGTAAG
8214550 TTATGTAAG
1 TTATGTAAG
*
8214559 TTATGTATAATA
1 TTATG--TAA-G
8214571 TTAATGTAAG
1 TT-ATGTAAG
8214581 TTATGT-A-
1 TTATGTAAG
*
8214588 TTATGTATG
1 TTATGTAAG
* *
8214597 TTATTTTAG
1 TTATGTAAG
8214606 TTATGTAAG
1 TTATGTAAG
*
8214615 TTGTGT-A-
1 TTATGTAAG
*
8214622 TTATGTGAG
1 TTATGTAAG
8214631 TTATG
1 TTATG
8214636 CAATTTACGT
Statistics
Matches: 183, Mismatches: 33, Indels: 48
0.69 0.12 0.18
Matches are distributed among these distances:
7 27 0.15
8 27 0.15
9 106 0.58
10 12 0.07
11 6 0.03
12 2 0.01
13 3 0.02
ACGTcount: A:0.31, C:0.02, G:0.19, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:8214439 original size:34 final size:34
Alignment explanation
Indices: 8214372--8214516 Score: 130
Period size: 34 Copynumber: 4.0 Consensus size: 34
8214362 AAATGAGTTA
* *
8214372 TATATAAGTTGTGTATTATGTAAGTTTTTTAAGT
1 TATATAAGTTGTGTATTATGTAAGTTATGTAAGT
8214406 TATATAAGTTGTGTATTATGTAAGTTATGTAAGT
1 TATATAAGTTGTGTATTATGTAAGTTATGTAAGT
* * *
8214440 CT-GACAAGTTATGTTTAGTATTAATTAATTAAGTTATGTAAGT
1 -TATATAAG-T-TG--T-GTATT-A-T--GTAAGTTATGTAAGT
* *
8214483 TGTGTAAGTTGTGTATTATGTAAGTTATGTAAGT
1 TATATAAGTTGTGTATTATGTAAGTTATGTAAGT
8214517 CTGACAAGTT
Statistics
Matches: 91, Mismatches: 9, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
34 50 0.55
35 2 0.02
36 3 0.03
37 1 0.01
38 6 0.07
39 6 0.07
40 1 0.01
41 3 0.03
42 2 0.02
43 17 0.19
ACGTcount: A:0.31, C:0.01, G:0.20, T:0.48
Consensus pattern (34 bp):
TATATAAGTTGTGTATTATGTAAGTTATGTAAGT
Found at i:8214519 original size:77 final size:77
Alignment explanation
Indices: 8214392--8214565 Score: 312
Period size: 77 Copynumber: 2.3 Consensus size: 77
8214382 GTGTATTATG
* * *
8214392 TAAGTTTTTTAAGTTATATAAGTTGTGTATTATGTAAGTTATGTAAGTCTGACAAGTTATGTTTA
1 TAAGTTATGTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTCTGACAAGTTATGTTTA
8214457 GTATTAATTAAT
66 GTATTAATTAAT
*
8214469 TAAGTTATGTAAGTTGTGTAAGTTGTGTATTATGTAAGTTATGTAAGTCTGACAAGTTATGTTTA
1 TAAGTTATGTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTCTGACAAGTTATGTTTA
8214534 GTATTAATTAAT
66 GTATTAATTAAT
8214546 TAAGTTATGTAAGTTATGTA
1 TAAGTTATGTAAGTTATGTA
8214566 TAATATTAAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
77 92 1.00
ACGTcount: A:0.32, C:0.02, G:0.19, T:0.47
Consensus pattern (77 bp):
TAAGTTATGTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTCTGACAAGTTATGTTTA
GTATTAATTAAT
Found at i:8214560 original size:34 final size:37
Alignment explanation
Indices: 8214445--8214635 Score: 107
Period size: 34 Copynumber: 5.2 Consensus size: 37
8214435 TAAGTCTGAC
8214445 AAGTTATGTTTAGTATTAAT-TAA-TTAAG-TTATGT
1 AAGTTATGTTTAGTATTAATGTAAGTTAAGATTATGT
* * * * * *
8214479 AAGTTGTGTAAGTTGTGTATT-ATGTAAGTTATGTAAGTCTGAC
1 AAGTTATGT---TT-AGTATTAATGTAAGTTAAG--ATTATG-T
8214522 AAGTTATGTTTAGTATTAAT-TAA-TTAAG-TTATGT
1 AAGTTATGTTTAGTATTAATGTAAGTTAAGATTATGT
* * *
8214556 AAGTTATGTATAATATTAATGTAAGTTATGTATTATGT
1 AAGTTATGTTTAGTATTAATGTAAGTTAAG-ATTATGT
* **
8214594 ATGTTAT-TTTAG--TT-ATGTAAGTTGTGTATTATGT
1 AAGTTATGTTTAGTATTAATGTAAGTTAAG-ATTATGT
*
8214628 GAGTTATG
1 AAGTTATG
8214636 CAATTTACGT
Statistics
Matches: 120, Mismatches: 21, Indels: 31
0.70 0.12 0.18
Matches are distributed among these distances:
34 50 0.42
35 8 0.07
36 4 0.03
37 7 0.06
38 24 0.20
39 12 0.10
40 4 0.03
42 3 0.03
43 8 0.07
ACGTcount: A:0.31, C:0.01, G:0.19, T:0.48
Consensus pattern (37 bp):
AAGTTATGTTTAGTATTAATGTAAGTTAAGATTATGT
Found at i:8214927 original size:22 final size:22
Alignment explanation
Indices: 8214902--8215013 Score: 69
Period size: 22 Copynumber: 5.2 Consensus size: 22
8214892 TATATGTTAC
8214902 ATATCCA-TGCCATATATTAAAA
1 ATATCCATTG-CATATATTAAAA
**
8214924 ATATAGATTGCATATATTAAAA
1 ATATCCATTGCATATATTAAAA
*
8214946 ATATCC--T--ATAT-TAAAAAA
1 ATATCCATTGCATATAT-TAAAA
* *
8214964 ATAT-AATTG-ATATTTCTAAAAA
1 ATATCCATTGCATATAT-T-AAAA
8214986 ATATCCATTTTGCATATATTAAAA
1 ATATCCA--TTGCATATATTAAAA
8215010 ATAT
1 ATAT
8215014 AGGTTTTAAC
Statistics
Matches: 69, Mismatches: 10, Indels: 20
0.70 0.10 0.20
Matches are distributed among these distances:
17 1 0.01
18 12 0.17
19 1 0.01
20 5 0.07
21 1 0.01
22 29 0.42
23 3 0.04
24 8 0.12
25 4 0.06
26 5 0.07
ACGTcount: A:0.48, C:0.10, G:0.04, T:0.38
Consensus pattern (22 bp):
ATATCCATTGCATATATTAAAA
Found at i:8214938 original size:33 final size:33
Alignment explanation
Indices: 8214856--8214928 Score: 137
Period size: 33 Copynumber: 2.2 Consensus size: 33
8214846 ATAAAATTTG
8214856 AAATATATGTTACATATCCATACCATATATTAA
1 AAATATATGTTACATATCCATACCATATATTAA
*
8214889 AAATATATGTTACATATCCATGCCATATATTAA
1 AAATATATGTTACATATCCATACCATATATTAA
8214922 AAATATA
1 AAATATA
8214929 GATTGCATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.47, C:0.14, G:0.04, T:0.36
Consensus pattern (33 bp):
AAATATATGTTACATATCCATACCATATATTAA
Found at i:8215501 original size:14 final size:14
Alignment explanation
Indices: 8215482--8215511 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
8215472 CTCGAACAGC
8215482 AAGATGATTAACTA
1 AAGATGATTAACTA
8215496 AAGATGATTAACTA
1 AAGATGATTAACTA
8215510 AA
1 AA
8215512 AACCTTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27
Consensus pattern (14 bp):
AAGATGATTAACTA
Found at i:8220374 original size:15 final size:15
Alignment explanation
Indices: 8220354--8220386 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
8220344 CACTAACATC
8220354 TAACCCCTAAACCCT
1 TAACCCCTAAACCCT
8220369 TAACCCCTAAACCCT
1 TAACCCCTAAACCCT
8220384 TAA
1 TAA
8220387 ATCTCGGCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.36, C:0.42, G:0.00, T:0.21
Consensus pattern (15 bp):
TAACCCCTAAACCCT
Found at i:8221059 original size:23 final size:23
Alignment explanation
Indices: 8221016--8221059 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
8221006 CCTAAATTAT
* *
8221016 ACATATTTTACAATTACATAAGA
1 ACATATTTTAAAATTAAATAAGA
8221039 ACATA-TTTAAAATATAAATAA
1 ACATATTTTAAAAT-TAAATAA
8221060 AAAAATTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.55, C:0.09, G:0.02, T:0.34
Consensus pattern (23 bp):
ACATATTTTAAAATTAAATAAGA
Found at i:8221123 original size:393 final size:388
Alignment explanation
Indices: 8220326--8221251 Score: 1443
Period size: 393 Copynumber: 2.4 Consensus size: 388
8220316 CTTAAACCCT
* * *
8220326 AAATTCCTAAGTCTTAACCACTAACATCTAACCCCTAAACCCTTAACCCCTAAACCCTTAAATCT
1 AAATCCCTAAGTCTTAACCACTAACATCTAACCCCTAAACCCCT--CCCCTAAA-CCTTAAATCC
*
8220391 CGGCCAACCCTTAATTAAGCATAATCCATAATCTATAATCTCTAAATCCATATATATATATAGTA
63 CGGCCAACCCTTAATTAAGCATAATCCATAATCTATAATCCCTAAATCC--ATATATATATAGTA
* * *
8220456 CTCCCTAAAAATTAAAAAGCATTAATTAATTGTATAAAATTCAAAATCTCAGTTAAACCTTAATC
126 CTCCCTAAACATTAAAAAGCATTAATTAATTGTATAAAATTAAAAATCTCAATTAAACCTTAATC
*
8220521 TTATTAAACCCGCCTAAATTAACCATTGAAGGGATATAAATATTTAAGTATTCTATCTATTATAT
191 TTATTAAACCCGCCTAAATTAACCATTGAAGGGATATAAATATTTAAGTACTCTATCTATTATAT
* *
8220586 ATATCTCTCTCAAGGCATAATTTAAACCCTAATTTATACATCTTTTACAATTACATAAGAACATA
256 ATATCTCTCTCAAGGCATAATTTAAACCCTAAATTATACATATTTTACAATTACATAAGAACATA
** * *
8220651 TTTAAAATATAAATAAAAAATTAATCTAAACCCAAAATTGTAACCAGACCCTTGAAACCCTAAAC
321 TTTAAAATATAAATAAAAAATTAATCTAAACCCAAAACCGTAACCAGACCCCTAAAACCCTAAAC
8220716 ACA
386 ACA
*
8220719 AAATCCCTAAGTCTTAACAACTAACATCTAACCCCTAAACCCCTCCCCTAAACCTTAAATCCCGG
1 AAATCCCTAAGTCTTAACCACTAACATCTAACCCCTAAACCCCTCCCCTAAACCTTAAATCCCGG
*
8220784 CCAACCCTTAGTTAAGCATAATCCATAATCTATAATCCCTAAATCCATATATATATAGTACTCCC
66 CCAACCCTTAATTAAGCATAATCCATAATCTATAATCCCTAAATCCATATATATATAGTACTCCC
8220849 TAAACATTAAAAAGCATTAATTAATTGTATAAAATTAAAAATCTCAATTAAACCTTAATCTTATT
131 TAAACATTAAAAAGCATTAATTAATTGTATAAAATTAAAAATCTCAATTAAACCTTAATCTTATT
* **
8220914 AAATCCGCCTAAATTAACCATTGAAGGGATATAAATAATTTTCCGTACTCTATCTATTATATATA
196 AAACCCGCCTAAATTAACCATTGAAGGGATATAAAT-A-TTTAAGTACTCTATCTATTATATATA
8220979 TCTCTCTCAAGGCATAATTAATTAAACCCTAAATTATACATATTTTACAATTACATAAGAACATA
259 TCTCTCTCAAGGCATAA-T--TTAAACCCTAAATTATACATATTTTACAATTACATAAGAACATA
*
8221044 TTTAAAATATAAATAAAAAAATTAATCTAAA-CCAAAACCGTAACCTGACCCCTAAAACCCTAAA
321 TTTAAAATATAAAT-AAAAAATTAATCTAAACCCAAAACCGTAACCAGACCCCTAAAACCCTAAA
8221108 CACA
385 CACA
8221112 AAATCCCTAAGTCTTAACCACTAACATCTAACCCCT-AA---CT--CCTAAACCTTAAATCCCGG
1 AAATCCCTAAGTCTTAACCACTAACATCTAACCCCTAAACCCCTCCCCTAAACCTTAAATCCCGG
* * * *
8221171 CCAACCCTTAATTAAGCAAAACCCCTAATCTATAATCCATATATAAATCCATATATATATAGTAC
66 CCAACCCTTAATTAAGCATAATCCATAATCTATAATCC----CTAAATCCATATATATATAGTAC
*
8221236 TCCCTAAACCTTAAAA
127 TCCCTAAACATTAAAA
8221252 TTATATGAAC
Statistics
Matches: 496, Mismatches: 27, Indels: 22
0.91 0.05 0.04
Matches are distributed among these distances:
387 53 0.11
388 116 0.23
389 3 0.01
390 96 0.19
391 46 0.09
392 2 0.00
393 164 0.33
394 16 0.03
ACGTcount: A:0.42, C:0.23, G:0.05, T:0.30
Consensus pattern (388 bp):
AAATCCCTAAGTCTTAACCACTAACATCTAACCCCTAAACCCCTCCCCTAAACCTTAAATCCCGG
CCAACCCTTAATTAAGCATAATCCATAATCTATAATCCCTAAATCCATATATATATAGTACTCCC
TAAACATTAAAAAGCATTAATTAATTGTATAAAATTAAAAATCTCAATTAAACCTTAATCTTATT
AAACCCGCCTAAATTAACCATTGAAGGGATATAAATATTTAAGTACTCTATCTATTATATATATC
TCTCTCAAGGCATAATTTAAACCCTAAATTATACATATTTTACAATTACATAAGAACATATTTAA
AATATAAATAAAAAATTAATCTAAACCCAAAACCGTAACCAGACCCCTAAAACCCTAAACACA
Found at i:8222027 original size:112 final size:112
Alignment explanation
Indices: 8221765--8222134 Score: 452
Period size: 112 Copynumber: 3.3 Consensus size: 112
8221755 ATTAAGGTAA
* * *
8221765 AAGGCCATCGAAGGCCACTAAACGA---C---GTATTTTATTTTTTGTGGCGTTTTTCCAGAAAA
1 AAGGCCACCGAAGGCCACTAAACGACGCCGTTGTATTTTATTTTTTGCGGCG-TTTTCCTGAAAA
* * *
8221824 CGCCGCTAAAAA-AAGACCATTAGCGGCACTATACCAAAAATGCCACT
65 CGCCGCTAAAAACAAGACCATTAGCGGCGCTAGACCAAAAACGCCACT
* * * *
8221871 AGGGCCACCGAAGGCCACTAAACAACGCCATTGTATTTTATTTTTTGCGGTGTTTATCCTGAAAA
1 AAGGCCACCGAAGGCCACTAAACGACGCCGTTGTATTTTATTTTTTGCGGCGTTT-TCCTGAAAA
*
8221936 CGCCGCTAAAAACATAGACCATTAGCGGCGCAAGACCAAAAACGCCACT
65 CGCCGCTAAAAACA-AGACCATTAGCGGCGCTAGACCAAAAACGCCACT
* * * * ** *
8221985 AACGCCACCGTA-GCCACTAAACGACGCCGTTGTATTTT-TTTTTGGCGGCATTTTTTTTAAAAC
1 AAGGCCACCGAAGGCCACTAAACGACGCCGTTGTATTTTATTTTTTGCGGCGTTTTCCTGAAAAC
* *
8222048 GCCGCTAAAAACACAGACCATTAGCGGCGCTTGACAAAAAACGCCACT
66 GCCGCTAAAAACA-AGACCATTAGCGGCGCTAGACCAAAAACGCCACT
*
8222096 AAGGCCACCGAAGGCCACTAAACGACGCCGTTATATTTT
1 AAGGCCACCGAAGGCCACTAAACGACGCCGTTGTATTTT
8222135 GCTAAAAACA
Statistics
Matches: 226, Mismatches: 28, Indels: 14
0.84 0.10 0.05
Matches are distributed among these distances:
106 22 0.10
109 1 0.00
111 64 0.28
112 75 0.33
113 25 0.11
114 39 0.17
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.24
Consensus pattern (112 bp):
AAGGCCACCGAAGGCCACTAAACGACGCCGTTGTATTTTATTTTTTGCGGCGTTTTCCTGAAAAC
GCCGCTAAAAACAAGACCATTAGCGGCGCTAGACCAAAAACGCCACT
Found at i:8222171 original size:84 final size:84
Alignment explanation
Indices: 8222051--8222236 Score: 336
Period size: 84 Copynumber: 2.2 Consensus size: 84
8222041 TTAAAACGCC
* *
8222051 GCTAAAAACACAGACCATTAGCGGCGCTTGACAAAAAACGCCACTAAGGCCACCGAAGGCCACTA
1 GCTAAAAACACAGACCATTAGCGGCGCTAGACAAAAAACGCCACTAAAGCCACCGAAGGCCACTA
8222116 AACGACGCCGTTATATTTT
66 AACGACGCCGTTATATTTT
*
8222135 GCTAAAAACACAAACCATTAGCGGCGCTAGACAAAAAACGCCACTAAAGCCACCGAAGGCCACTA
1 GCTAAAAACACAGACCATTAGCGGCGCTAGACAAAAAACGCCACTAAAGCCACCGAAGGCCACTA
*
8222200 AACGACGCCGTTGTATTTT
66 AACGACGCCGTTATATTTT
8222219 GCTAAAAACACAGACCAT
1 GCTAAAAACACAGACCAT
8222237 ATTGGTGTTT
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 97 1.00
ACGTcount: A:0.38, C:0.28, G:0.18, T:0.16
Consensus pattern (84 bp):
GCTAAAAACACAGACCATTAGCGGCGCTAGACAAAAAACGCCACTAAAGCCACCGAAGGCCACTA
AACGACGCCGTTATATTTT
Found at i:8228063 original size:17 final size:18
Alignment explanation
Indices: 8228022--8228065 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
8228012 TGTCATATCA
*
8228022 ATAAATAAATTCAAATTT
1 ATAAAAAAATTCAAATTT
8228040 ATAAAAAAATTCAAATTT
1 ATAAAAAAATTCAAATTT
8228058 -TAAAAAAA
1 ATAAAAAAA
8228066 CTTATAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 8 0.32
18 17 0.68
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32
Consensus pattern (18 bp):
ATAAAAAAATTCAAATTT
Found at i:8241180 original size:20 final size:21
Alignment explanation
Indices: 8241149--8241188 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
8241139 ATTTTAAGTG
8241149 AAATATAATGTTATTTAATTT
1 AAATATAATGTTATTTAATTT
8241170 AAATA-AATGTTATTTAATT
1 AAATATAATGTTATTTAATT
8241189 AATTAATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (21 bp):
AAATATAATGTTATTTAATTT
Found at i:8241713 original size:47 final size:48
Alignment explanation
Indices: 8241651--8241768 Score: 147
Period size: 47 Copynumber: 2.5 Consensus size: 48
8241641 CCGTTATCAG
*
8241651 CAATTATGTGGTGGCTTGTCCACGATGTGCTATACG-G-CCA-TTATCGA
1 CAATTATGTGGTGGCTTGTCCACGATAT-CT-TACGTGACCATTTATCGA
*
8241698 CAATTATGTGGTGGCTCT-TCCACGATATCTTATGTGACCATTTATCGA
1 CAATTATGTGGTGGCT-TGTCCACGATATCTTACGTGACCATTTATCGA
8241746 C-ATCTATGTGGTGGCTTGTCCAC
1 CAAT-TATGTGGTGGCTTGTCCAC
8241769 AAATGGTGTG
Statistics
Matches: 63, Mismatches: 2, Indels: 11
0.83 0.03 0.14
Matches are distributed among these distances:
45 3 0.05
46 3 0.05
47 31 0.49
48 26 0.41
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (48 bp):
CAATTATGTGGTGGCTTGTCCACGATATCTTACGTGACCATTTATCGA
Found at i:8245469 original size:19 final size:20
Alignment explanation
Indices: 8245427--8245469 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
8245417 TCATGTTTTC
* *
8245427 TATTCGCATTTTCATATTCA
1 TATTCACATTTTCAAATTCA
8245447 -ATTCACATTTTCAAATT-A
1 TATTCACATTTTCAAATTCA
8245465 TATTC
1 TATTC
8245470 CACAATCACG
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.30, C:0.19, G:0.02, T:0.49
Consensus pattern (20 bp):
TATTCACATTTTCAAATTCA
Found at i:8245712 original size:21 final size:21
Alignment explanation
Indices: 8245652--8245721 Score: 56
Period size: 21 Copynumber: 3.4 Consensus size: 21
8245642 CAGAAGCAGT
*
8245652 ATACGACACATAAAGTGCCTGA
1 ATACGACACATATAGTGCCT-A
* **
8245674 A-ATGACACACGT-GCTGCCTA
1 ATACGACACATATAG-TGCCTA
*
8245694 ATACGACACATATAGTGCCTG
1 ATACGACACATATAGTGCCTA
8245715 AT-CGACA
1 ATACGACA
8245722 AAGCCGATAA
Statistics
Matches: 37, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
20 8 0.22
21 27 0.73
22 2 0.05
ACGTcount: A:0.36, C:0.26, G:0.19, T:0.20
Consensus pattern (21 bp):
ATACGACACATATAGTGCCTA
Found at i:8255123 original size:21 final size:21
Alignment explanation
Indices: 8255097--8255147 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
8255087 ACATACTTAA
*
8255097 AATAAGAATAATAACAAA-AGT
1 AATAAGAATAATAA-AAAGAAT
*
8255118 AATAAGAAGAATAAAAAGAAT
1 AATAAGAATAATAAAAAGAAT
8255139 AATAA-AATA
1 AATAAGAATA
8255148 TATAGTAACC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 6 0.23
21 20 0.77
ACGTcount: A:0.71, C:0.02, G:0.10, T:0.18
Consensus pattern (21 bp):
AATAAGAATAATAAAAAGAAT
Found at i:8263025 original size:24 final size:24
Alignment explanation
Indices: 8262979--8263025 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
8262969 TAATTATCTT
* * * *
8262979 AATTAGAGTGATTAAATTGAAAAA
1 AATTAGAATGACTAAAATAAAAAA
8263003 AATTAGAATGACTAAAATAAAAA
1 AATTAGAATGACTAAAATAAAAA
8263026 TAACGCTATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.60, C:0.02, G:0.13, T:0.26
Consensus pattern (24 bp):
AATTAGAATGACTAAAATAAAAAA
Found at i:8268971 original size:21 final size:21
Alignment explanation
Indices: 8268930--8268972 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
8268920 AATAAAGTAG
*
8268930 ATTATATATTATTTTTATAGT
1 ATTATATATTATATTTATAGT
8268951 ATTATATATTATGATTT-TAGT
1 ATTATATATTAT-ATTTATAGT
8268972 A
1 A
8268973 AATTCATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (21 bp):
ATTATATATTATATTTATAGT
Found at i:8269242 original size:56 final size:55
Alignment explanation
Indices: 8269174--8269367 Score: 187
Period size: 56 Copynumber: 3.3 Consensus size: 55
8269164 ATATATTATG
8269174 ATTTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATAT
1 ATTTTTAGTAAATT-ATATAAGAATATTTAATATTAAGAATTTTATTAAATTATAT
* * * * *
8269230 ATTTTTATTAAATTATATTTAATAAT-TATT-ATTTTAAATTATATTTTA-TAGTATTATATACT
1 ATTTTTAGTAAATTATA--TAAGAATAT-TTAATATT-AA-GA-ATTTTATTA--AAT-TATA-T
8269292 ATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATAT
1 AT--TTTTAGTAAATT-ATATAAGAATATTTAATATTAAGAATTTTATTAAATTATAT
*
8269350 ATTTTTATTAAATTATAT
1 ATTTTTAGTAAATTATAT
8269368 TTAATAATAA
Statistics
Matches: 111, Mismatches: 11, Indels: 33
0.72 0.07 0.21
Matches are distributed among these distances:
55 7 0.06
56 29 0.26
57 10 0.09
58 6 0.05
59 10 0.09
60 4 0.04
61 10 0.09
62 6 0.05
63 10 0.09
64 16 0.14
65 3 0.03
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (55 bp):
ATTTTTAGTAAATTATATAAGAATATTTAATATTAAGAATTTTATTAAATTATAT
Found at i:8269338 original size:120 final size:121
Alignment explanation
Indices: 8269111--8269381 Score: 508
Period size: 120 Copynumber: 2.2 Consensus size: 121
8269101 NNNNNNNNTA
*
8269111 TTTTATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGTACTATATATTATGAT
1 TTTTATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGTACTATATACTATGAT
8269176 TTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
66 TTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
*
8269232 TTTTATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGTATTATATACTATGA-
1 TTTTATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGTACTATATACTATGAT
8269296 TTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
66 TTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
*
8269352 TTTTATTAAATTATATTTAATAATAATTAT
1 TTTTATTAAATTATATTTAATAATTATTAT
8269382 GATAAAATAT
Statistics
Matches: 147, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
120 85 0.58
121 62 0.42
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (121 bp):
TTTTATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGTACTATATACTATGAT
TTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
Found at i:8269619 original size:16 final size:16
Alignment explanation
Indices: 8269600--8269667 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
8269590 TTGAATTACT
* *
8269600 ATTACGCCTCTATTCT
1 ATTACACCTCTATTCC
*
8269616 ATTACAGCTCTATTCC
1 ATTACACCTCTATTCC
8269632 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
8269648 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
8269664 ATTA
1 ATTA
8269668 TAGCGAACTA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.25, C:0.32, G:0.03, T:0.40
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:8272691 original size:40 final size:40
Alignment explanation
Indices: 8272638--8272729 Score: 130
Period size: 40 Copynumber: 2.3 Consensus size: 40
8272628 GCGTTTGGAT
8272638 AAAAAACGCCGCTAAAAATCAAGCATTAGCGGCACTTTTA
1 AAAAAACGCCGCTAAAAATCAAGCATTAGCGGCACTTTTA
* * * * *
8272678 AAAAAACGCCGCTAAAGATTAAGTATTAGCGGCGCTTTTT
1 AAAAAACGCCGCTAAAAATCAAGCATTAGCGGCACTTTTA
*
8272718 TAAAAACGCCGC
1 AAAAAACGCCGC
8272730 AAATGCTTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (40 bp):
AAAAAACGCCGCTAAAAATCAAGCATTAGCGGCACTTTTA
Found at i:8272874 original size:41 final size:41
Alignment explanation
Indices: 8272806--8273011 Score: 218
Period size: 41 Copynumber: 5.0 Consensus size: 41
8272796 TTTTTAGTTT
* * * *
8272806 TCGGGGCTTTAGTGGCGTTTTTTAAAAAGCGACGCTAATGC
1 TCGGGTCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
* * *
8272847 TCATGGT-TTTAGCGGCGTTTTTAAAAAAGCGTCGCTAATGA
1 TC-GGGTCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
*** *
8272888 TCGGGTCTTTAGCGGCGTTTTTCGGAAAGCGCCGCTAATGA
1 TCGGGTCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
* * * *
8272929 TCAGGTCTTTAACGGCGCTTTCT-CAAAAGCGCCGCTAATGC
1 TCGGGTCTTTAGCGGCG-TTTTTAAAAAAGCGCCGCTAATGC
** *
8272970 TCGGGTCTTTAGCGGCGTTTTTAATGAAGCGTCGCTAATGC
1 TCGGGTCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
8273011 T
1 T
8273012 TAGGGCAATA
Statistics
Matches: 137, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
40 7 0.05
41 124 0.91
42 6 0.04
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (41 bp):
TCGGGTCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
Found at i:8278014 original size:43 final size:43
Alignment explanation
Indices: 8277845--8278197 Score: 435
Period size: 42 Copynumber: 8.3 Consensus size: 43
8277835 AGATTATGTT
* ** * * *
8277845 TTTAGCGGCGTTTTTGCTAGAAGTGCCGCTAAAGGT-TTGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * ** * *
8277887 TTTAGTGGCGTTTTTGATAAAAGTGCCGCTAAAGGT-TTGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * ** * *
8277929 TTTAGTGGCGTTTTTGATAAAAGTGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * * * *
8277972 TATAGCGGCATTTGTGGGAAAAGCGTCGCTAAAGTTCCTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
*
8278015 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
8278058 -TTAGTGGCGTTTGTGTGAAAAGCACCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
8278100 TTTAGCGGCGTTTGTGGG-AAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
8278142 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
8278185 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
8278198 TTTCTAAAAA
Statistics
Matches: 282, Mismatches: 26, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
42 154 0.55
43 128 0.45
ACGTcount: A:0.20, C:0.17, G:0.31, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:8278105 original size:85 final size:86
Alignment explanation
Indices: 8277845--8278197 Score: 435
Period size: 85 Copynumber: 4.2 Consensus size: 86
8277835 AGATTATGTT
* ** * * * * * **
8277845 TTTAGCGGCGTTTTTGCTAGAAGTGCCGCTAAAGGT-TTGTTCTTTAGTGGCGTTTTTGATAAAA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAA
* *
8277909 GTGCCGCTAAAGGT-TTGTTC
66 GCGCCGCTAAAGGTCTTGGTC
* * ** * * * *
8277929 TTTAGTGGCGTTTTTGATAAAAGTGCCGCTAAAGGTCATGGTCTATAGCGGCATTTGTGGGAAAA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAA
* * *
8277994 GCGTCGCTAAAGTTCCTGGTC
66 GCGCCGCTAAAGGTCTTGGTC
* * *
8278015 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGTC-TTAGTGGCGTTTGTGTGAAAA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAA
*
8278079 GCACCGCTAAAGGTCTTGGTC
66 GCGCCGCTAAAGGTCTTGGTC
8278100 TTTAGCGGCGTTTGTGGG-AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAA
8278164 GCGCCGCTAAAGGTCTTGGTC
66 GCGCCGCTAAAGGTCTTGGTC
8278185 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
8278198 TTTCTAAAAA
Statistics
Matches: 232, Mismatches: 34, Indels: 5
0.86 0.13 0.02
Matches are distributed among these distances:
84 56 0.24
85 135 0.58
86 41 0.18
ACGTcount: A:0.20, C:0.17, G:0.31, T:0.32
Consensus pattern (86 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAA
GCGCCGCTAAAGGTCTTGGTC
Found at i:8281118 original size:43 final size:42
Alignment explanation
Indices: 8281024--8281118 Score: 102
Period size: 43 Copynumber: 2.2 Consensus size: 42
8281014 AGTTAACTCA
* *
8281024 TATGAGTTTCAGTTTAACCCTAATTGGTTTCCGTTCAGCTCT
1 TATGAGCTTCAGTTTAACCCTAATTGGTTTCCGTTCAGCACT
* * * *
8281066 TTTGAGCTTCAGTTTTAACCCT-TTTGGTTTTCTGTTTAGCACT
1 TATGAGCTTCAG-TTTAACCCTAATTGG-TTTCCGTTCAGCACT
*
8281109 TATGTGCTTC
1 TATGAGCTTC
8281119 TATGTAGCCT
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
42 14 0.33
43 29 0.67
ACGTcount: A:0.16, C:0.20, G:0.17, T:0.47
Consensus pattern (42 bp):
TATGAGCTTCAGTTTAACCCTAATTGGTTTCCGTTCAGCACT
Found at i:8287025 original size:6 final size:6
Alignment explanation
Indices: 8287014--8287039 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8287004 TTGAGTTGAG
8287014 TTCATC TTCATC TTCATC TTCATC TT
1 TTCATC TTCATC TTCATC TTCATC TT
8287040 TCTTACAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.31, G:0.00, T:0.54
Consensus pattern (6 bp):
TTCATC
Done.