Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr12 ID=Chr12-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35429946
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 509281 characters in sequence are not A, C, G, or T
File 51 of 120
Found at i:14262581 original size:52 final size:51
Alignment explanation
Indices: 14262499--14262596 Score: 144
Period size: 52 Copynumber: 1.9 Consensus size: 51
14262489 AGGAAAGGGA
* *
14262499 ACCAAAGTGAAAACCAGCAAAGGGCGCTTTGATTCCTAAAAAAAAAAAGAAG
1 ACCAAAGTGAAAACCAGCAAAGGGCACTTTGAGT-CTAAAAAAAAAAAGAAG
*
14262551 ACCAAAGTGAAAACTC-GCAAAGGGCACTTTGAGTCTAAACAAAAAA
1 ACCAAAGTGAAAAC-CAGCAAAGGGCACTTTGAGTCTAAAAAAAAAA
14262597 TAATAACAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
51 11 0.26
52 30 0.71
53 1 0.02
ACGTcount: A:0.49, C:0.18, G:0.18, T:0.14
Consensus pattern (51 bp):
ACCAAAGTGAAAACCAGCAAAGGGCACTTTGAGTCTAAAAAAAAAAAGAAG
Found at i:14263953 original size:44 final size:44
Alignment explanation
Indices: 14263905--14264385 Score: 186
Period size: 44 Copynumber: 11.0 Consensus size: 44
14263895 GTTACAGCGA
*
14263905 AGTAGATCGAAAATGGCAGATCTTATCTCCCTAAGCAGTAGTGG
1 AGTAGATCGAAAATGACAGATCTTATCTCCCTAAGCAGTAGTGG
* **** * * ** *
14263949 AGTAGATTGAAGCCAATA-ATCCTATCTCCCTGAAGTTGCAGTGG
1 AGTAGATCGAAAATGACAGATCTTATCTCCCT-AAGCAGTAGTGG
* * * * * ** * *
14263993 AGTGGAT-TAAAATAAAAGATCTTATCTCTCTAAAGTGGCAGTAG
1 AGTAGATCGAAAATGACAGATCTTATCTCCCT-AAGCAGTAGTGG
* * * ** * **
14264037 AGTAGATCG--CAT--CAGGTCTTATTTCCCTGAAGTTGCAGCAG
1 AGTAGATCGAAAATGACAGATCTTATCTCCCT-AAGCAGTAGTGG
* * *
14264078 AGCAGACCGAAGAATTACAGATCTTATCTCCCTAAGCAGTAGTGG
1 AGTAGATCGAA-AATGACAGATCTTATCTCCCTAAGCAGTAGTGG
** **
14264123 A-TCAGATAAAAAATGGTAGATCTTATCTCCCTAAGCAGTAGTGG
1 AGT-AGATCGAAAATGACAGATCTTATCTCCCTAAGCAGTAGTGG
* * * * ** *
14264167 AGCAGAT--TAAA-GCCAGTAATCCTATCTCCCTGAAGTTGCAGTGG
1 AGTAGATCGAAAATGACAG--ATCTTATCTCCCT-AAGCAGTAGTGG
** * * * * * * *
14264211 AGCGGAT-TAAAATAAAAGATCTTATTTCTCTAA--AGTTGCATAG
1 AGTAGATCGAAAATGACAGATCTTATCTCCCTAAGCAGTAG--TGG
* * ** * *
14264254 AGTAGATC--ACAT--CAGGTCTTATCTCCCTGAAGTTGCAGCGG
1 AGTAGATCGAAAATGACAGATCTTATCTCCCT-AAGCAGTAGTGG
* * *
14264295 AGCAGATCGAAGAATTACAGAGCTTATCTCCCTAAGCAGTAGTGG
1 AGTAGATCGAA-AATGACAGATCTTATCTCCCTAAGCAGTAGTGG
*
14264340 AGCAGATCGAAAATGACAGATCTTATCTCCCTAAGCAGTAGTGG
1 AGTAGATCGAAAATGACAGATCTTATCTCCCTAAGCAGTAGTGG
14264384 AG
1 AG
14264386 CAGGTTGAAG
Statistics
Matches: 320, Mismatches: 91, Indels: 52
0.69 0.20 0.11
Matches are distributed among these distances:
40 12 0.04
41 44 0.14
42 6 0.02
43 43 0.13
44 150 0.47
45 35 0.11
46 30 0.09
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (44 bp):
AGTAGATCGAAAATGACAGATCTTATCTCCCTAAGCAGTAGTGG
Found at i:14264363 original size:217 final size:218
Alignment explanation
Indices: 14263908--14264565 Score: 1111
Period size: 218 Copynumber: 3.0 Consensus size: 218
14263898 ACAGCGAAGT
* *
14263908 AGATCGAAAATGGCAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGCCAATAATCCTA
1 AGATCGAAAATGGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGCCAGTAATCCTA
* *
14263973 TCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATAAAAGATCTTATCTCTCTAAAGTGGCAGTAGA
66 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTAAAGTTGCAGTAGA
* * *
14264038 GTAGATCGCATCAGGTCTTATTTCCCTGAAGTTGCAGCAGAGCAGACCGAAGAATTACAGATCTT
131 GTAGATCACATCAGGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACCGAAGAATTACAGATCTT
*
14264103 ATCTCCCTAAGCAGTAGTGGATC
196 ATCTCCCTAAGCAGTAGTGGAGC
** * *
14264126 AGATAAAAAATGGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGCCAGTAATCCTA
1 AGATCGAAAATGGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGCCAGTAATCCTA
*
14264191 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGATCTTATTTCTCTAAAGTTGCA-TAGA
66 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTAAAGTTGCAGTAGA
* *
14264255 GTAGATCACATCAGGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAGAATTACAGAGCTT
131 GTAGATCACATCAGGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACCGAAGAATTACAGATCTT
14264320 ATCTCCCTAAGCAGTAGTGGAGC
196 ATCTCCCTAAGCAGTAGTGGAGC
* *
14264343 AGATCGAAAATGACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTTGAAGCCAGTAATCCTA
1 AGATCGAAAATGGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGCCAGTAATCCTA
* *
14264408 TCTCCCTGAAGTTGTAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTGCAGTAGA
66 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTAAAGTTGCAGTAGA
* *
14264473 ATAGATCACATCAGGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACCAAAGAATTACAGATCTT
131 GTAGATCACATCAGGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACCGAAGAATTACAGATCTT
*
14264538 ATCTCCCTAAGCAATAGTGGAGC
196 ATCTCCCTAAGCAGTAGTGGAGC
14264561 AGATC
1 AGATC
14264566 AAAGACCCCA
Statistics
Matches: 410, Mismatches: 29, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
217 202 0.49
218 208 0.51
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (218 bp):
AGATCGAAAATGGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGCCAGTAATCCTA
TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTAAAGTTGCAGTAGA
GTAGATCACATCAGGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACCGAAGAATTACAGATCTT
ATCTCCCTAAGCAGTAGTGGAGC
Found at i:14264386 original size:44 final size:44
Alignment explanation
Indices: 14264077--14264658 Score: 232
Period size: 44 Copynumber: 13.3 Consensus size: 44
14264067 AGTTGCAGCA
* *
14264077 GAGCAGACCGAAGAATTACAGATCTTATCTCCCTAAGCAGTAGTG
1 GAGCAGATCGAA-AATGACAGATCTTATCTCCCTAAGCAGTAGTG
* ** **
14264122 GATCAGATAAAAAATGGTAGATCTTATCTCCCTAAGCAGTAGTG
1 GAGCAGATCGAAAATGACAGATCTTATCTCCCTAAGCAGTAGTG
* * * ** *
14264166 GAGCAGAT--TAAA-GCCAGTAATCCTATCTCCCTGAAGTTGCAGTG
1 GAGCAGATCGAAAATGACAG--ATCTTATCTCCCT-AAGCAGTAGTG
* * * * * * * *
14264210 GAGCGGAT-TAAAATAAAAGATCTTATTTCTCTAA--AGTTGCATA
1 GAGCAGATCGAAAATGACAGATCTTATCTCCCTAAGCAGTAG--TG
* * * ** * *
14264253 GAGTAGATC--ACAT--CAGGTCTTATCTCCCTGAAGTTGCAGCG
1 GAGCAGATCGAAAATGACAGATCTTATCTCCCT-AAGCAGTAGTG
* *
14264294 GAGCAGATCGAAGAATTACAGAGCTTATCTCCCTAAGCAGTAGTG
1 GAGCAGATCGAA-AATGACAGATCTTATCTCCCTAAGCAGTAGTG
14264339 GAGCAGATCGAAAATGACAGATCTTATCTCCCTAAGCAGTAGTG
1 GAGCAGATCGAAAATGACAGATCTTATCTCCCTAAGCAGTAGTG
* * * * **
14264383 GAGCAGGTTG--AA-GCCAGTAATCCTATCTCCCTGAAGTTGTAGTG
1 GAGCAGATCGAAAATGACAG--ATCTTATCTCCCT-AAGCAGTAGTG
* * * * * ** * *
14264427 GAGCGGAT-TAAAATAAAAGATCTTATCTCTCTGAAGTTGCAGTA
1 GAGCAGATCGAAAATGACAGATCTTATCTCCCT-AAGCAGTAGTG
** * * ** * *
14264471 GAATAGATC--ACAT--CAGGTCTTATCTCCCTGAAGTTGCAGCG
1 GAGCAGATCGAAAATGACAGATCTTATCTCCCT-AAGCAGTAGTG
* * * *
14264512 GAGCAGACCAAAGAATTACAGATCTTATCTCCCTAAGCAATAGTG
1 GAGCAGATCGAA-AATGACAGATCTTATCTCCCTAAGCAGTAGTG
*** * * * *
14264557 GAGCAGATC-AAAGACCCCAG-CCTTGTTTCCCTAAGCAGCAGTG
1 GAGCAGATCGAAA-ATGACAGATCTTATCTCCCTAAGCAGTAGTG
* * * * * *
14264600 AAGTAGGTTGAAACAAATTACAGATCTTATCTCCTTAAGCAGTAGTG
1 GAGCAGATCG--A-AAATGACAGATCTTATCTCCCTAAGCAGTAGTG
14264647 GAGCAGATCGAA
1 GAGCAGATCGAA
14264659 GACCCTAGCC
Statistics
Matches: 394, Mismatches: 109, Indels: 69
0.69 0.19 0.12
Matches are distributed among these distances:
40 12 0.03
41 48 0.12
42 8 0.02
43 64 0.16
44 151 0.38
45 47 0.12
46 38 0.10
47 26 0.07
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (44 bp):
GAGCAGATCGAAAATGACAGATCTTATCTCCCTAAGCAGTAGTG
Found at i:14264626 original size:90 final size:90
Alignment explanation
Indices: 14264525--14264702 Score: 266
Period size: 90 Copynumber: 2.0 Consensus size: 90
14264515 CAGACCAAAG
*
14264525 AATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGACCCCAGCCTTGTTTCCCTA
1 AATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGACCCCAGCCTTGTCTCCCTA
14264590 AGCAGCAGTGAAGTAGGTTGAAACA
66 AGCAGCAGTGAAGTAGGTTGAAACA
* * * * * *
14264615 AATTACAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGACCCTAGCCTTGTCTCGCTG
1 AATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGACCCCAGCCTTGTCTCCCTA
* * *
14264680 AGTAGTAGTGGAGTAGGTTGAAA
66 AGCAGCAGTGAAGTAGGTTGAAA
14264703 ATAGCAGATC
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
90 78 1.00
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (90 bp):
AATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGACCCCAGCCTTGTCTCCCTA
AGCAGCAGTGAAGTAGGTTGAAACA
Found at i:14265291 original size:17 final size:17
Alignment explanation
Indices: 14265269--14265308 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
14265259 AAGAAAAAAC
14265269 AAATAAATA-AAAATAAA
1 AAATAAA-ACAAAATAAA
*
14265286 AAATAAAACCAAATAAA
1 AAATAAAACAAAATAAA
14265303 AAATAA
1 AAATAA
14265309 TAGTGAAGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 1 0.05
17 20 0.95
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.15
Consensus pattern (17 bp):
AAATAAAACAAAATAAA
Found at i:14267021 original size:5 final size:5
Alignment explanation
Indices: 14267011--14267053 Score: 56
Period size: 5 Copynumber: 9.2 Consensus size: 5
14267001 AGTTATTCAC
*
14267011 TTTTA TTTTA TTTCA TTTTA TTTTA -TTT- TTTTA TTTT- TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
14267054 AAATCTTTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
4 10 0.30
5 23 0.70
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:14267021 original size:15 final size:14
Alignment explanation
Indices: 14267003--14267047 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
14266993 AATTTTTAAG
14267003 TTATTCACTTTTATT
1 TTATTCA-TTTTATT
14267018 TTATTTCATTTTATT
1 TTA-TTCATTTTATT
*
14267033 TTATT-TTTTTATT
1 TTATTCATTTTATT
14267046 TT
1 TT
14267048 TTTTATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 9 0.32
14 2 0.07
15 13 0.46
16 4 0.14
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.76
Consensus pattern (14 bp):
TTATTCATTTTATT
Found at i:14275062 original size:22 final size:22
Alignment explanation
Indices: 14275034--14275141 Score: 144
Period size: 22 Copynumber: 4.9 Consensus size: 22
14275024 TTTATTGTTC
*
14275034 AAACATGAGAGCTTAGTACGTG
1 AAACATGAGAGCTTAGTACGTT
14275056 AAACATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
**
14275078 AGCCATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
** * * *
14275100 AGCCATGAGGGTTTAGTTCGTT
1 AAACATGAGAGCTTAGTACGTT
14275122 AAACATGAGAGCTTAGTACG
1 AAACATGAGAGCTTAGTACG
14275142 ATATGAACAG
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 75 1.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (22 bp):
AAACATGAGAGCTTAGTACGTT
Found at i:14282437 original size:21 final size:20
Alignment explanation
Indices: 14282401--14282440 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
14282391 GTATATGGTC
14282401 GATTAATTAGTAATATATAT
1 GATTAATTAGTAATATATAT
14282421 GATTATATTA-TACATATATA
1 GATTA-ATTAGTA-ATATATA
14282441 GCATTGTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (20 bp):
GATTAATTAGTAATATATAT
Found at i:14283255 original size:14 final size:14
Alignment explanation
Indices: 14283227--14283261 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
14283217 TTAGGTTTAA
14283227 TTATTT-TTTAATT
1 TTATTTATTTAATT
*
14283240 TTATTTATTTATTT
1 TTATTTATTTAATT
14283254 TTATTTAT
1 TTATTTAT
14283262 ATTTTCACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
TTATTTATTTAATT
Found at i:14287902 original size:10 final size:11
Alignment explanation
Indices: 14287882--14287907 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14287872 TTTAACTTTC
14287882 TTTCTTTTTTT
1 TTTCTTTTTTT
14287893 TTTCTTTTTTT
1 TTTCTTTTTTT
14287904 TTTC
1 TTTC
14287908 CATTCTCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
TTTCTTTTTTT
Found at i:14310429 original size:16 final size:17
Alignment explanation
Indices: 14310405--14310438 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
14310395 AAAGATGCGA
14310405 ACAAAATAAAATA-AAC
1 ACAAAATAAAATATAAC
*
14310421 ACAATATAAAATATAAC
1 ACAAAATAAAATATAAC
14310438 A
1 A
14310439 ACAGCAGGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.71, C:0.12, G:0.00, T:0.18
Consensus pattern (17 bp):
ACAAAATAAAATATAAC
Found at i:14313116 original size:31 final size:30
Alignment explanation
Indices: 14313070--14313185 Score: 115
Period size: 31 Copynumber: 3.8 Consensus size: 30
14313060 CAAACACTGG
*
14313070 TACATAGTACTTGATAAAATATAAACATCAA
1 TACATAGTACCTGATAAAATATAAACA-CAA
* * * * * *
14313101 CACATTGTGCCTGATACAATATGAACACTGA
1 TACATAGTACCTGATAAAATATAAACAC-AA
* *
14313132 TACATAGTATCTGATAAAATATAATCACCAA
1 TACATAGTACCTGATAAAATATAAACA-CAA
*
14313163 TACATAGTACTTGATAAAATATA
1 TACATAGTACCTGATAAAATATA
14313186 TTTATCAAAA
Statistics
Matches: 66, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
30 1 0.02
31 64 0.97
32 1 0.02
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.29
Consensus pattern (30 bp):
TACATAGTACCTGATAAAATATAAACACAA
Found at i:14313178 original size:62 final size:62
Alignment explanation
Indices: 14313062--14313184 Score: 158
Period size: 62 Copynumber: 2.0 Consensus size: 62
14313052 TAAGATAACA
* * * * *
14313062 AACACTGGTACATAGTACTTGATAAAATATAAACATCAACACATTGTGCCTGATACAATATG
1 AACACTGATACATAGTACTTGATAAAATATAAACACCAACACATAGTACCTGATAAAATATG
* * *
14313124 AACACTGATACATAGTA-TCTGATAAAATATAATCACCAATACATAGTACTTGATAAAATAT
1 AACACTGATACATAGTACT-TGATAAAATATAAACACCAACACATAGTACCTGATAAAATAT
14313185 ATTTATCAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
61 1 0.02
62 51 0.98
ACGTcount: A:0.45, C:0.16, G:0.11, T:0.28
Consensus pattern (62 bp):
AACACTGATACATAGTACTTGATAAAATATAAACACCAACACATAGTACCTGATAAAATATG
Found at i:14313180 original size:93 final size:93
Alignment explanation
Indices: 14313070--14313240 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
14313060 CAAACACTGG
* * * *
14313070 TACATAGTACTTGATAAAATATAAACATCAACACATTGTGCCTGATACAATATGAACACTGATAC
1 TACATAGTACTTGATAAAATATAAACATCAAAACATTATGCCTGAGACAATATGAACACCGATAC
*
14313135 ATAGTATCTGATAAAATATAATCACCAA
66 ATAGTACCTGATAAAATATAATCACCAA
*** * *
14313163 TACATAGTACTTGATAAAATATATTTATCAAAACATTATGCCTGAGACAATATGAATACCGGTAC
1 TACATAGTACTTGATAAAATATAAACATCAAAACATTATGCCTGAGACAATATGAACACCGATAC
14313228 ATAGTACCTGATA
66 ATAGTACCTGATA
14313241 TTTCAAAACC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.29
Consensus pattern (93 bp):
TACATAGTACTTGATAAAATATAAACATCAAAACATTATGCCTGAGACAATATGAACACCGATAC
ATAGTACCTGATAAAATATAATCACCAA
Found at i:14313461 original size:2 final size:2
Alignment explanation
Indices: 14313454--14313511 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
14313444 CCAAGCCAAT
14313454 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
14313496 CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA
14313512 ATACAACATA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:14315529 original size:348 final size:348
Alignment explanation
Indices: 14314876--14315932 Score: 1956
Period size: 348 Copynumber: 3.0 Consensus size: 348
14314866 GTTAGTCCAG
* * * *
14314876 ACAACCACATTTATGCTTTTTATCTTTTGGAAGTCATTCGCTTTGATACGTAAGGTACATTATCT
1 ACAAGCACATGTATGCTTTTTATCTTTTGGAAGTCATTCGCTTTGATACGTAAGATAAATTATCT
* *
14314941 CCCCAACTTGGACTTGATAGGTGACATAATAGTCTTTTAATCAATTTGTTTAATTCTGATTAAAC
66 CCCCAATTTGGACTTGATAGGTGACATAATAGTCTTTTAATCAATTTGCTTAATTCTGATTAAAC
14315006 TATGAACTATTTAGATTACCTACTAATATAAGTTGACTTCTTGTATTATGATCCAACCACATAAT
131 TATGAACTATTTAGATTACCTACTAATATAAGTTGACTTCTTGTATTATGATCCAACCACATAAT
* * *
14315071 GTAACTTAATATTAGTTAAACATTAAGTAACCAGTGAACCAATATTTGTTTATTCATTTTGCTTT
196 GCAGCTTAATATTAGTTAAACATTAAGTAACCAGTGAACCAATATTTGTTTATTCATTTTGTTTT
**
14315136 GTATACAAAAACCATTAAGGACAAATACAAACGATATTAATGAGAATGATGAAATTTTATTAAAC
261 GCGTACAAAAACCATTAAGGACAAATACAAACGATATTAATGAGAATGATGAAATTTTATTAAAC
14315201 TAATATGTTCTGTTCTAAAAATT
326 TAATATGTTCTGTTCTAAAAATT
*
14315224 ACAAGCACATGTATGTTTTTTATCTTTTGGAAGTCATTCGCTTTGATACGTAAGATAAATTATCT
1 ACAAGCACATGTATGCTTTTTATCTTTTGGAAGTCATTCGCTTTGATACGTAAGATAAATTATCT
* *
14315289 CCCCAATTTGGACTTGATAGGTGACATAATAGTCTTTTAACCAAATTGCTTAATTCTGATTAAAC
66 CCCCAATTTGGACTTGATAGGTGACATAATAGTCTTTTAATCAATTTGCTTAATTCTGATTAAAC
14315354 TATGAACTATTTAGATTACCTACTAATATAAGTTGACTTCTTGTATTATGATCCAACCACATAAT
131 TATGAACTATTTAGATTACCTACTAATATAAGTTGACTTCTTGTATTATGATCCAACCACATAAT
14315419 GCAGCTTAATATTAGTTAAACATTAAGTAACCAGTGAACCAATATTTGTTTATTCATTTTGTTTT
196 GCAGCTTAATATTAGTTAAACATTAAGTAACCAGTGAACCAATATTTGTTTATTCATTTTGTTTT
14315484 GCGTACAAAAACCATTAAGGACAAATACAAACGATATTAATGAGAATGATGAAATTTTATTAAAC
261 GCGTACAAAAACCATTAAGGACAAATACAAACGATATTAATGAGAATGATGAAATTTTATTAAAC
14315549 TAATATGTTCTGTTCTAAAAATT
326 TAATATGTTCTGTTCTAAAAATT
14315572 ACAAGCACATGTATGCTTTTTATCTTTTGGAAGTCATTCGCTTTGATACGTAAGATAAATTATCT
1 ACAAGCACATGTATGCTTTTTATCTTTTGGAAGTCATTCGCTTTGATACGTAAGATAAATTATCT
14315637 CCCCAATTTGGACTTGATAGGTGACATAATAGTCTTTTAATCAATTTGCTTAATTCTGATTAAAC
66 CCCCAATTTGGACTTGATAGGTGACATAATAGTCTTTTAATCAATTTGCTTAATTCTGATTAAAC
14315702 TATGAACTATTTAGATTACCTACTAATATAAGTTGACTTCTTGTATTATGATCCAACCACATAAT
131 TATGAACTATTTAGATTACCTACTAATATAAGTTGACTTCTTGTATTATGATCCAACCACATAAT
*
14315767 GCAGCTTAATATTAGTTAAACATTAACTAACCAGTGAACCAATATTTGTTTATTCATTTTGTTTT
196 GCAGCTTAATATTAGTTAAACATTAAGTAACCAGTGAACCAATATTTGTTTATTCATTTTGTTTT
*
14315832 -CGTACAAAAACCATTAAGGAAAAATACAAACGATATTAATGAGAATGATGAAATTTTATTAAAC
261 GCGTACAAAAACCATTAAGGACAAATACAAACGATATTAATGAGAATGATGAAATTTTATTAAAC
14315896 TAATATGTTCTGTTCTAAAAATT
326 TAATATGTTCTGTTCTAAAAATT
14315919 ACAAGCACAT-TATG
1 ACAAGCACATGTATG
14315933 AAGAAAAACT
Statistics
Matches: 690, Mismatches: 19, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
346 4 0.01
347 96 0.14
348 590 0.86
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.38
Consensus pattern (348 bp):
ACAAGCACATGTATGCTTTTTATCTTTTGGAAGTCATTCGCTTTGATACGTAAGATAAATTATCT
CCCCAATTTGGACTTGATAGGTGACATAATAGTCTTTTAATCAATTTGCTTAATTCTGATTAAAC
TATGAACTATTTAGATTACCTACTAATATAAGTTGACTTCTTGTATTATGATCCAACCACATAAT
GCAGCTTAATATTAGTTAAACATTAAGTAACCAGTGAACCAATATTTGTTTATTCATTTTGTTTT
GCGTACAAAAACCATTAAGGACAAATACAAACGATATTAATGAGAATGATGAAATTTTATTAAAC
TAATATGTTCTGTTCTAAAAATT
Found at i:14318286 original size:53 final size:52
Alignment explanation
Indices: 14318199--14318304 Score: 140
Period size: 53 Copynumber: 2.0 Consensus size: 52
14318189 GGAAAGTCCA
* * * * * *
14318199 TGAATTTTATAAAGTTCTATTTTTGAACTGTCTATGCAAAGTATGTGCGTAC
1 TGAATTTTATAAAGTTCTATGTATAAACTATCTATGCAAAATATGTGCATAC
*
14318251 TGAATTTCTGTAAAGTTCTATGTATAAACTATCTATGCAAAATATGTGCATAC
1 TGAATTT-TATAAAGTTCTATGTATAAACTATCTATGCAAAATATGTGCATAC
14318304 T
1 T
14318305 TGTAAACTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
52 7 0.15
53 39 0.85
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (52 bp):
TGAATTTTATAAAGTTCTATGTATAAACTATCTATGCAAAATATGTGCATAC
Found at i:14323339 original size:35 final size:35
Alignment explanation
Indices: 14323258--14323425 Score: 122
Period size: 35 Copynumber: 4.8 Consensus size: 35
14323248 AACATGCAAA
* * * * **
14323258 CTATAAGTATTACGCGAGTTGTAGCGATACGTGAG
1 CTATAAGTATTATGCAAGTTGTAACAATACACGAG
* * * * * *
14323293 TTGTAACTATTATGCAAGCTATAACGATACACGAG
1 CTATAAGTATTATGCAAGTTGTAACAATACACGAG
**
14323328 CTATAAGTATTATGTGAGTTGTAACAATACACGAG
1 CTATAAGTATTATGCAAGTTGTAACAATACACGAG
* ** * **
14323363 -TCGTAAGTATTATGTGAGTTGTAACTATACGTGAG
1 CT-ATAAGTATTATGCAAGTTGTAACAATACACGAG
*
14323398 CTATAAGTATTGTGCAAAGTTGTAACAA
1 CTATAAGTATTATGC-AAGTTGTAACAA
14323426 CATGCGAGAT
Statistics
Matches: 103, Mismatches: 27, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
34 1 0.01
35 91 0.88
36 11 0.11
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (35 bp):
CTATAAGTATTATGCAAGTTGTAACAATACACGAG
Found at i:14323374 original size:70 final size:70
Alignment explanation
Indices: 14323258--14323408 Score: 167
Period size: 70 Copynumber: 2.2 Consensus size: 70
14323248 AACATGCAAA
* * ** *
14323258 CTATAAGTATTACGCGAGTTGTAGCGATACGTGAGTTGTAACTATTATGCAAGCTATAACGATAC
1 CTATAAGTATTACGCGAGTTGTAACAATACACGAGTCGTAACTATTATGCAAGCTATAACGATAC
14323323 ACGAG
66 ACGAG
* * * ** * * *
14323328 CTATAAGTATTATGTGAGTTGTAACAATACACGAGTCGTAAGTATTATGTGAGTTGTAACTATAC
1 CTATAAGTATTACGCGAGTTGTAACAATACACGAGTCGTAACTATTATGCAAGCTATAACGATAC
**
14323393 GTGAG
66 ACGAG
14323398 CTATAAGTATT
1 CTATAAGTATT
14323409 GTGCAAAGTT
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
70 66 1.00
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32
Consensus pattern (70 bp):
CTATAAGTATTACGCGAGTTGTAACAATACACGAGTCGTAACTATTATGCAAGCTATAACGATAC
ACGAG
Found at i:14324455 original size:23 final size:24
Alignment explanation
Indices: 14324414--14324464 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 24
14324404 TTTTCTTTTC
* * *
14324414 TTTTCTTCTTATTTTTAGATTAGG
1 TTTTCCTCTTATTTTTAGAATAGA
14324438 TTTTCCTCTT-TTTTTAGAATAGA
1 TTTTCCTCTTATTTTTAGAATAGA
14324461 TTTT
1 TTTT
14324465 ATTTTTTTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.18, C:0.10, G:0.10, T:0.63
Consensus pattern (24 bp):
TTTTCCTCTTATTTTTAGAATAGA
Found at i:14326266 original size:40 final size:40
Alignment explanation
Indices: 14326024--14326268 Score: 139
Period size: 40 Copynumber: 6.1 Consensus size: 40
14326014 TTGTGCTCAA
* * *
14326024 TATTTATTGGGC-TATGTGCCTAGCAGGATTT-GTGCCAATG
1 TATTTATCGGGCTTA-GTGCCTAGCAGG-TTTCGTGTCAGTG
* * * ** *
14326064 TAATTATCAGGCTTTA-TCCCTAGCAGCCTTCGTG-CTGGTG
1 TATTTATCGGGC-TTAGTGCCTAGCAGGTTTCGTGTC-AGTG
* * *
14326104 T-TTTGATCAGTCTTAGTGCCTAGCAGCG-TTCGTGTCGGTG
1 TATTT-ATCGGGCTTAGTGCCTAGCAG-GTTTCGTGTCAGTG
* * * * * * *
14326144 TATTTATTGAGCTTAGTGCCTAGTTAAGCTTCATGCCAGTG
1 TATTTATCGGGCTTAGTGCCTAG-CAGGTTTCGTGTCAGTG
14326185 TATTTTATCGGGC-TATGTGCCTAGCAGGCTTT-GTG-CTAGTG
1 TA-TTTATCGGGCTTA-GTGCCTAGCAGG-TTTCGTGTC-AGTG
* *
14326226 TAGTTATCGGGCTTAATGCCTAGCAGGTTTCGTGTCAGTG
1 TATTTATCGGGCTTAGTGCCTAGCAGGTTTCGTGTCAGTG
14326266 TAT
1 TAT
14326269 CAAATTGTCT
Statistics
Matches: 157, Mismatches: 30, Indels: 36
0.70 0.13 0.16
Matches are distributed among these distances:
39 11 0.07
40 95 0.61
41 31 0.20
42 20 0.13
ACGTcount: A:0.18, C:0.18, G:0.27, T:0.38
Consensus pattern (40 bp):
TATTTATCGGGCTTAGTGCCTAGCAGGTTTCGTGTCAGTG
Found at i:14336857 original size:17 final size:17
Alignment explanation
Indices: 14336826--14336869 Score: 52
Period size: 20 Copynumber: 2.4 Consensus size: 17
14336816 GCCAAGAATG
14336826 ATAAAAGAAATAATAAA
1 ATAAAAGAAATAATAAA
14336843 ATAACAAGAAAAATAATAAAA
1 ATAA-AAG--AAATAAT-AAA
14336864 ATAAAA
1 ATAAAA
14336870 TAATAACGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 4 0.17
18 3 0.13
20 9 0.39
21 7 0.30
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (17 bp):
ATAAAAGAAATAATAAA
Found at i:14336865 original size:29 final size:29
Alignment explanation
Indices: 14336833--14336891 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
14336823 ATGATAAAAG
* *
14336833 AAATAATAA-AATAACAAGAAAAATAATAA
1 AAATAA-AATAATAACGAAAAAAATAATAA
*
14336862 AAATAAAATAATAACGAAAATAATAATAA
1 AAATAAAATAATAACGAAAAAAATAATAA
14336891 A
1 A
14336892 TGAGAAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 2 0.08
29 24 0.92
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (29 bp):
AAATAAAATAATAACGAAAAAAATAATAA
Found at i:14336881 original size:26 final size:27
Alignment explanation
Indices: 14336837--14336892 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
14336827 TAAAAGAAAT
14336837 AATAAAATAACAAGAAAAATAATAA-A
1 AATAAAATAACAAGAAAAATAATAATA
*
14336863 AATAAAATAATAACG-AAAATAATAATA
1 AATAAAATAACAA-GAAAAATAATAATA
14336890 AAT
1 AAT
14336893 GAGAAAAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.20
Consensus pattern (27 bp):
AATAAAATAACAAGAAAAATAATAATA
Found at i:14338520 original size:40 final size:39
Alignment explanation
Indices: 14338396--14338534 Score: 154
Period size: 40 Copynumber: 3.5 Consensus size: 39
14338386 TCGAGATATG
* * * *
14338396 TGCCTAGCAAGCTTTGTACTGGTGTAGTTATCAGGCTTTA
1 TGCCTAGTAGGCTTTGTGCTGGTGTAGTTATCGGGC-TTA
* *
14338436 TGCCTAGTAGGCTTCGTGCTGGTGTATTTATCGGGCTTA
1 TGCCTAGTAGGCTTTGTGCTGGTGTAGTTATCGGGCTTA
* * *
14338475 GTGCCTAGAAGGCTTTGTG-TCGGTGTAGTTATTGGGATTGA
1 -TGCCTAGTAGGCTTTGTGCT-GGTGTAGTTATCGGGCTT-A
14338516 TGCCTAGTAGGCTTTGTGC
1 TGCCTAGTAGGCTTTGTGC
14338535 CAGTGTATCA
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
39 4 0.05
40 78 0.94
41 1 0.01
ACGTcount: A:0.16, C:0.16, G:0.31, T:0.37
Consensus pattern (39 bp):
TGCCTAGTAGGCTTTGTGCTGGTGTAGTTATCGGGCTTA
Found at i:14338541 original size:80 final size:80
Alignment explanation
Indices: 14338395--14338542 Score: 192
Period size: 80 Copynumber: 1.9 Consensus size: 80
14338385 ATCGAGATAT
* * **
14338395 GTGCCTAGCAAGCTTTGTACTGGTGTAGTTATCAGGCTTTATGCCTAGTAGGCTTCGTGCTGGTG
1 GTGCCTAGCAAGCTTTGTACTGGTGTAGTTATCAGGATTGATGCCTAGTAGGCTTCGTGCCAGTG
14338460 TATTTATCGGGCTTA
66 TATTTATCGGGCTTA
* ** *
14338475 GTGCCTAG-AAGGCTTTGT-GTCGGTGTAGTTATTGGGATTGATGCCTAGTAGGCTTTGTGCCAG
1 GTGCCTAGCAA-GCTTTGTACT-GGTGTAGTTATCAGGATTGATGCCTAGTAGGCTTCGTGCCAG
14338538 TGTAT
64 TGTAT
14338543 CAAATTGTCT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 55 0.95
ACGTcount: A:0.16, C:0.16, G:0.31, T:0.37
Consensus pattern (80 bp):
GTGCCTAGCAAGCTTTGTACTGGTGTAGTTATCAGGATTGATGCCTAGTAGGCTTCGTGCCAGTG
TATTTATCGGGCTTA
Found at i:14341974 original size:17 final size:17
Alignment explanation
Indices: 14341954--14341990 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
14341944 ATAATCTTTT
14341954 GATAAAATGAAAGAGGG
1 GATAAAATGAAAGAGGG
14341971 GATAAAATGAAAGAGGG
1 GATAAAATGAAAGAGGG
14341988 GAT
1 GAT
14341991 GCTTAGGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.35, T:0.14
Consensus pattern (17 bp):
GATAAAATGAAAGAGGG
Found at i:14349791 original size:70 final size:69
Alignment explanation
Indices: 14349664--14349921 Score: 324
Period size: 70 Copynumber: 3.7 Consensus size: 69
14349654 TCTCTTTGCA
*
14349664 CCCAGCACTAGTCAAATAATCGACA-ATGTTTTACGCCCAACGA-TAGTTGGATAAGCCAATGAT
1 CCCAACACTAGTCAAATAATC-A-ATATGTTTTACGCCCAAC-ACTAGTTGGATAAGCCAATGAT
14349727 AAGTGTG
63 AAGTGTG
* * *
14349734 CCCAACACTTGTCGAATAATCGAATATGTTTTACGCCCAACACTAGTTGGATAAGCCAACGATAA
1 CCCAACACTAGTCAAATAATC-AATATGTTTTACGCCCAACACTAGTTGGATAAGCCAATGATAA
14349799 GTGTG
65 GTGTG
* * * * * *
14349804 CCCAGCACTAGTCGAATAATCAACGATGTTTTCCGCCTAACACTAGTTGGATAAACCAAAT-ATA
1 CCCAACACTAGTCAAATAATCAA-TATGTTTTACGCCCAACACTAGTTGGATAAGCC-AATGATA
14349868 AGTGTG
64 AGTGTG
*
14349874 CCCAACACTAGTCAAATAATCAATAAGATTTTTACGCCCAACACTAGT
1 CCCAACACTAGTCAAATAATCAATATG--TTTTACGCCCAACACTAGT
14349922 CTGATTAATC
Statistics
Matches: 165, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
69 6 0.04
70 140 0.85
71 19 0.12
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (69 bp):
CCCAACACTAGTCAAATAATCAATATGTTTTACGCCCAACACTAGTTGGATAAGCCAATGATAAG
TGTG
Found at i:14349807 original size:35 final size:34
Alignment explanation
Indices: 14349698--14349885 Score: 107
Period size: 35 Copynumber: 5.4 Consensus size: 34
14349688 AATGTTTTAC
*
14349698 GCCCAACGA-TAGTTGGATAAGCCAATGATAAGTGT
1 GCCCAAC-ACTAGTTGGATAA-CCAACGATAAGTGT
* * * * * * *
14349733 GCCCAACACTTGTCGAATAATCGA--ATATGTTTT
1 GCCCAACACTAGTTGGATAACCAACGATAAG-TGT
14349766 ACGCCCAACACTAGTTGGATAAGCCAACGATAAGTGT
1 --GCCCAACACTAGTTGGATAA-CCAACGATAAGTGT
* * * * *
14349803 GCCCAGCACTAGTCGAATAATCAACGAT--GTTTT
1 GCCCAACACTAGTTGGATAACCAACGATAAG-TGT
* **
14349836 CCGCCTAACACTAGTTGGATAAACCAAATATAAGTGT
1 --GCCCAACACTAGTTGGAT-AACCAACGATAAGTGT
14349873 GCCCAACACTAGT
1 GCCCAACACTAGT
14349886 CAAATAATCA
Statistics
Matches: 112, Mismatches: 28, Indels: 26
0.67 0.17 0.16
Matches are distributed among these distances:
32 5 0.04
33 4 0.04
34 10 0.09
35 75 0.67
36 9 0.08
37 4 0.04
38 5 0.04
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (34 bp):
GCCCAACACTAGTTGGATAACCAACGATAAGTGT
Found at i:14358206 original size:13 final size:14
Alignment explanation
Indices: 14358190--14358219 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
14358180 ATGCTTGATG
14358190 TTAATTGAA-GTAA
1 TTAATTGAATGTAA
14358203 TTAATTGAATGTAA
1 TTAATTGAATGTAA
14358217 TTA
1 TTA
14358220 TCTATTTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.43
Consensus pattern (14 bp):
TTAATTGAATGTAA
Found at i:14364396 original size:15 final size:14
Alignment explanation
Indices: 14364373--14364425 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
14364363 GTTTTTATAT
*
14364373 TAATTATAAAGGTTA
1 TAATAATAAA-GTTA
14364388 TAATAATAAA-TTA
1 TAATAATAAAGTTA
*
14364401 TATATTATAAAGTTA
1 TA-ATAATAAAGTTA
*
14364416 TTATAATAAA
1 TAATAATAAA
14364426 AACAAAACAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
13 5 0.16
14 14 0.44
15 13 0.41
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.42
Consensus pattern (14 bp):
TAATAATAAAGTTA
Found at i:14365368 original size:44 final size:42
Alignment explanation
Indices: 14365307--14365431 Score: 117
Period size: 44 Copynumber: 2.9 Consensus size: 42
14365297 GATTCCATTG
*
14365307 TGTG-TTATCGTGTAAGACCACGTCTGGGACATTGGCATCGATT
1 TGTGATTAT-GTGTAAGACC-CGTCTGGGACATTGGCATCGATA
* * *
14365350 TGTGATTTATGTGTAAGACCCTGTTTGGGTCAGTGGCATCGATA
1 TGTGA-TTATGTGTAAGACCC-GTCTGGGACATTGGCATCGATA
** * * *
14365394 TGTGATTACATGTAAAACTGCGTCTGGGACGTTGGCAT
1 TGTGATTATGTGTAAGAC-CCGTCTGGGACATTGGCAT
14365432 TGAACGATAT
Statistics
Matches: 66, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
43 28 0.42
44 34 0.52
45 4 0.06
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.34
Consensus pattern (42 bp):
TGTGATTATGTGTAAGACCCGTCTGGGACATTGGCATCGATA
Found at i:14369936 original size:51 final size:50
Alignment explanation
Indices: 14369818--14369995 Score: 207
Period size: 51 Copynumber: 3.5 Consensus size: 50
14369808 GATGGTCATG
* *
14369818 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-A-TGATAGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTA-CGGATAGT-ATTGGTCACA
* * * * * *
14369868 TGTGTAGTGCTATGTGCAGGCTACTATGCGTACGGGATAGTTTTGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTAC-GGATAGTATTGGTCACA
* *
14369919 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGTAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTA-CGGATAGTATTGGTCACA
*
14369970 TGTGTAGTACTATGTGCAAGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
14369996 TGTGAACCGA
Statistics
Matches: 107, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
49 1 0.01
50 32 0.30
51 72 0.67
52 2 0.02
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTACGGATAGTATTGGTCACA
Found at i:14369999 original size:26 final size:26
Alignment explanation
Indices: 14369919--14369999 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
14369909 TTTGATCACG
*
14369919 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAAGCTACTA
* * * *
14369945 CGTGTA-T-CGGATG-GTAATGGTCAC-A
1 TGTGTAGTAC-TATGTGCAA-GCT-ACTA
14369970 TGTGTAGTACTATGTGCAAGCTACTA
1 TGTGTAGTACTATGTGCAAGCTACTA
14369996 TGTG
1 TGTG
14370000 AACCGAACAT
Statistics
Matches: 39, Mismatches: 9, Indels: 14
0.63 0.15 0.23
Matches are distributed among these distances:
24 3 0.08
25 14 0.36
26 18 0.46
27 4 0.10
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAAGCTACTA
Found at i:14370016 original size:102 final size:101
Alignment explanation
Indices: 14369817--14370016 Score: 260
Period size: 102 Copynumber: 2.0 Consensus size: 101
14369807 TGATGGTCAT
* *
14369817 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTGCTATG
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCACATGTGTAGTACTATG
* * * * * *
14369882 TGCAGGCTACTATGCGTACGGGATAGTTTTGATCAC
66 TGCAAGCTACTATGCGAACCGAACAGTATTGATCAC
* *
14369918 GTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGG-ATGGTAATGGTCACATGTGTAGTACTA
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT-A-GGTCACATGTGTAGTACTA
*
14369982 TGTGCAAGCTACTATGTGAACCGAACA-TCATTGAT
64 TGTGCAAGCTACTATGCGAACCGAACAGT-ATTGAT
14370017 TAATAAGGTG
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
100 4 0.05
101 38 0.45
102 43 0.51
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (101 bp):
GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCACATGTGTAGTACTATG
TGCAAGCTACTATGCGAACCGAACAGTATTGATCAC
Found at i:14370070 original size:45 final size:45
Alignment explanation
Indices: 14370006--14370093 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
14369996 TGTGAACCGA
*
14370006 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGATTCCACCAG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCAG
*
14370051 ACATCATTGATTAATAAGGTGGTTGCTATGTGTTGAATCCACC
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACC
14370094 GAGTATCTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCAG
Found at i:14377880 original size:958 final size:958
Alignment explanation
Indices: 14373059--14378029 Score: 7014
Period size: 957 Copynumber: 5.2 Consensus size: 958
14373049 ATTAAACAAG
* * *
14373059 GTGTTGAAAATGGCCAACCATGCTGCTATTATGTTTTTGTTAAAGTGTATGTTACTATGATGATT
1 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
* * * * * *
14373124 TTGTTGAGTGCATACAGCTTGTAAGCATGCTACAACATTTGTGCA--CTGCAGCAACATATTTTT
66 TTGTTGAGTGCATACAGATTGTATGCATGCTGCAGCATTTGTGCATGTTGCAGCAACATATTTTC
* * * * *
14373187 TGTTTTAGTTGCAATGTAATTAAGTTTGGTTGAGAATGAACGTTGATGTTGATGTTTTGATCGAA
131 TATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGGGA
* *
14373252 TGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGAT
196 TGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGAAATGTTTTAATAGTTCCAATGCTGAT
*
14373317 TAGTAGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGAAT
261 TAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGAAT
* * * * *
14373382 GAGCTAGCATATCAGTTGTGTAAGGTAGATTGCTTCCTTGCTGCATGTTTGTGACCAAGTAAATT
326 GAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAATT
* * * *
14373447 GTTCTTTGTTTCTTCCTCCTTTGTTCTTTATATTGTTCTCTTCTTTTGCTGCTCT-TAAAAACAC
391 GTTCTTTGTTTCTTCCTCCTTTGTTCTCTGTATTGTTCTCTTCTTTTGCTGCTGTCAAAAAAC-C
* * *
14373511 AACAAATGGTATCATGAGCCCAAGTCTTTAAGGGCTTGATTTTGCTTCTGTTGCTTGTTAAGAAA
455 AACAAATGGTATCATGAGCCCAAGTCTTTGAGGGCTTGATTTTGCTTCTGCTACTTGTTAAGAAA
* * * * * * *
14373576 GACAAGAAGTTGTTACAGCTTGTCATCTTTGTGGGTTACTTGTAAAAAAGACAGCACCAGCTCAC
520 GACAAGAAGCTGTTAAAGCCTGTCATCTTTGAGGGCTGCTTGTAAAAAAGACAGCAGCAGCTCAC
* * * *
14373641 CCCTGTGAGGCTCCCAGACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGTATGTGCAAGAAGA
585 CCCTGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGTTTGTGCATGAAGA
* * * *
14373706 CACTCCACAACAGGACGGAGTATATGCAAGAAGAAATAGGACTGTAATGAACAAAAGAACAAGGC
650 CACTCCACAGCAGGAGGGAGTATGTGCAAGAAGAAATAGGACTGTAATGAACAAAGGAACAAGGC
* * *
14373771 AAGATGTATTTGAAGGCAAGTTGTCAGCCTAGGCTGTGAAGGAGGAGAAAACTCCATTTGATGAA
715 AAGATGTATTTGAAGGCAAGTTGCCAGCCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATGAA
*
14373836 CAAATCCTTGGCACAAAAGACTGGGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAATGAGGC
780 CAAATCTTTGGCACAAAAGACTGGGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAATGAGGC
* **
14373901 CAAGGTTAAAGATGAATTGCTTGAGCAATGTCAACTTGAAAAGCATTTTGGGACTGCCAAGCTCA
845 CAAGGTTGAAGATGAATTGCTTGAGCAGGGTCAACTTGAAAAGCATTTTGGGACTGCCAAGCTCA
* * * *
14373966 AAACAACTTGATGAATGATTGGTATTCGCAGCATGGAGGCCAAGAAGGA
910 AAAAAACTTGATGAATGATTGGTATTTGCAGCATGAAGGCCAAGGAGGA
* * * *
14374015 GTGTTGAAAATGGCCAACCATGCTGTTGTTATGGTTTTGTTAAAGTGCATGGTACTAAGATAATT
1 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
* * * *
14374080 TTGTTGAGTGCATACAGATTGTATACATGTTGCAGCATTTGTG-ATTGCTGCAACAACATATTTT
66 TTGTTGAGTGCATACAGATTGTATGCATGCTGCAGCATTTGTGCA-TGTTGCAGCAACATATTTT
* *
14374144 CTATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATTATCTTTGATGTTGATGTTTTGATGGG
130 CTATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGGG
* * *
14374209 ATGATTGAGCTGATAAGTCAGCTTATCCATGTGTACAAGTAATGTTTTAAGAGTTCCAATGCTGA
195 ATGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGAAATGTTTTAATAGTTCCAATGCTGA
*
14374274 TTAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACTATAAATGTATTGTTTTCATATTGAA
260 TTAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGAA
* * * * ** * *
14374339 TGAACAGGCATAT-AATTGTCTAAAGCAGATCACTTCCTTGCTGTACGTTTGTGTGCAAGTAAAT
325 TGAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAAT
* *
14374403 TGTTCTTTGTTTCTTCCTCCTTT-TCTCTCTGTATTGTTCACTTCTTTTGCTGCTGTCAAAAACC
390 TGTTCTTTGTTTCTTCCTCCTTTGT-TCTCTGTATTGTTCTCTTCTTTTGCTGCTGTCAAAAAAC
* * * * * * *
14374467 CAAAAAATTGTAT-ACTTAGCCCTAGACTTTGAGGGCTTG-TTTTACTTCTGCTACTTGTTAAAA
454 CAACAAATGGTATCA-TGAGCCCAAGTCTTTGAGGGCTTGATTTTGCTTCTGCTACTTGTTAAGA
* ** ** * *
14374530 AAGACAAGAAGCTGTTAAAGCCTGTCATCTTTGAGAGCTGCACGTAAAAAAGACAATAGCATCTT
518 AAGACAAGAAGCTGTTAAAGCCTGTCATCTTTGAGGGCTGCTTGTAAAAAAGACAGCAGCAGCTC
* * * * *
14374595 ACCCCTGTGAGACTCCCAAATAAGCTTGGGATAAGCTGTAGGAGTTTATCGAGTTCGTACATGAA
583 ACCCCTGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGTTTGTGCATGAA
* * * * *
14374660 GACACTCCACAGTAGGAGGGAGTATGTGCAAGAAGAAATAGGACTATACTGGACATAGGAACAAG
648 GACACTCCACAGCAGGAGGGAGTATGTGCAAGAAGAAATAGGACTGTAATGAACAAAGGAACAAG
* *
14374725 GCAAGATGTATTTGAAGGCAAGTTGCCAGCCAAGGCTGTAAAGGAGGAGAAGAATCCATTTGATG
713 GCAAGATGTATTTGAAGGCAAGTTGCCAGCCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATG
* *
14374790 AACAAATCTTTGGCACAAAAGACTGGGATAGTCAAGTGTGTGAATCGGATTTGGTTGAGAATGAG
778 AACAAATCTTTGGCACAAAAGACTGGGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAATGAG
*
14374855 GCCAAGGTTGAAGATGAATTGCTTGAGCAGGATCAACTTGAAAAGCATTTTGGGACTGCCAAGCT
843 GCCAAGGTTGAAGATGAATTGCTTGAGCAGGGTCAACTTGAAAAGCATTTTGGGACTGCCAAGCT
* * *
14374920 CAAAAAAACTTAATGAATGATTGGTATTTGCAGCATGGAGGCCAATGAGGA
908 CAAAAAAACTTGATGAATGATTGGTATTTGCAGCATGAAGGCCAAGGAGGA
* *
14374971 GTGTTGAAAATGGCCAACCATGCTGCTGTTATCTTTTTGTTAAAGGGCATGGTACTATGATGATT
1 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
* * * * * *
14375036 TTGTTAAGTGCATACAGATTGTATGCATGTTGCAGTATTTATGCTTGTTGCAGCTACATATTTTC
66 TTGTTGAGTGCATACAGATTGTATGCATGCTGCAGCATTTGTGCATGTTGCAGCAACATATTTTC
* * *
14375101 TGTTTTAGTTGGAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGGAA
131 TATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGGGA
* * * *
14375166 TGATTGAGCTGATAAGTCAGCTTATCCATGTCTACAAGCAATGTTTTAATAGTCCCAATGCTGAT
196 TGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGAAATGTTTTAATAGTTCCAATGCTGAT
* * * * *
14375231 TAGTGGGGTTAGTTGACTATTTTGTAATGTATTTTGACTATAAATGTATTGTTTTTATATTGAAT
261 TAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGAAT
*
14375296 GAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTTCTTGCTGCACGTTTGTGAGCAAGTAAATT
326 GAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAATT
* *
14375361 GTTCTTTGTTTCTTCCT-CTATTGTTCTCTGTATTGTTCTATGCTTTTGCTGCTGT-AAAAAACC
391 GTTCTTTGTTTCTTCCTCCT-TTGTTCTCTGTATTGTTCTCTTCTTTTGCTGCTGTCAAAAAA-C
* * * * *
14375424 CAACGAATGGTATCATGAGCCCAAGTCTTTGAAGGCTTGTTTTTG-TTGCTACTAATTGTTAAGA
454 CAACAAATGGTATCATGAGCCCAAGTCTTTGAGGGCTTGATTTTGCTT-CTGCTACTTGTTAAGA
* * * * * *
14375488 AAGACAAGAAGCTATTAAAGCCTATCATCTTTGAGGGTTGCTTGTAAAAAAAGATAGTAGCAGTT
518 AAGACAAGAAGCTGTTAAAGCCTGTCATCTTTGAGGGCTGCTTGT-AAAAAAGACAGCAGCAGCT
* * * *
14375553 CATCCCTATGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGAAGTTGATCGAGTTTTTGCATGA
582 CACCCCTGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGTTTGTGCATGA
* ** * * * * * * *
14375618 GGACACTTTATAGTAGGAGGCAGTATGTGCAAGAAAAAATAGGACTATAATGAAAAAATGAACAA
647 AGACACTCCACAGCAGGAGGGAGTATGTGCAAGAAGAAATAGGACTGTAATGAACAAAGGAACAA
* * * * * * *
14375683 GGCAAGATGTATTTGAAAGCAAGTTGTCAACCAAGGTTGTGAAGGACGAGAAGACTCTATTTGAA
712 GGCAAGATGTATTTGAAGGCAAGTTGCCAGCCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGAT
* *
14375748 GAAC-AATCTTTGGCACAAAAGA-TAGGGATAGTCAAGTGTTCGAATCAGATTTGGTTGAGAATA
777 GAACAAATCTTTGGCACAAAAGACT-GGGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAATG
* * * *
14375811 AGGCCAAGTTTGAAGATGAATTGCTTGAGCAGCGACAACTTGAAAAGCATTTTGGGACAGCCAAG
841 AGGCCAAGGTTGAAGATGAATTGCTTGAGCAGGGTCAACTTGAAAAGCATTTTGGGACTGCCAAG
* * * * *
14375876 CTCAAAAAAA-TTGATGAATGATTAGTATTTACAGCATGTAGGCCAAAGACGA
906 CTCAAAAAAACTTGATGAATGATTGGTATTTGCAGCATGAAGGCCAAGGAGGA
* *
14375928 GTGTTGAAAATGGCCAACCATGCTGCTGTTTTGTTTTTTTTAAAGTGCATGGTACTATGATGATT
1 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
* * * * * * * * *
14375993 TTGCTGAGGGTATACTGATTATATGCATGCTGCGGCATTTGTGCATGTTGCAGTAATAGATTTTC
66 TTGTTGAGTGCATACAGATTGTATGCATGCTGCAGCATTTGTGCATGTTGCAGCAACATATTTTC
* * * *
14376058 TATTTTAGTTCCAATATAATTTAGTTTGGTTGAGAATGAACATTGATATTGATGTTTTGATGGGA
131 TATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGGGA
* *
14376123 TGATTGAGTTAATAAGTCAACTTATCCATGTGTACAAGCAAA-GTTTTAATAGTTCCAATGCTGA
196 TGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAG-AAATGTTTTAATAGTTCCAATGCTGA
14376187 TTAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGAA
260 TTAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGAA
* * *
14376252 TTAGCAAGCATATCAGTTGTGTAAAGTAGATTGCTTTCTTGCTGCACGTTTGTGAGCAAGTAAAT
325 TGAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAAT
* * * *
14376317 TGTTCTTTGTTTCTTCCTCATTTGTTCTCTGTATTGTTCTCTTTTTTTGCTGCTG-CCAAAATCT
390 TGTTCTTTGTTTCTTCCTCCTTTGTTCTCTGTATTGTTCTCTTCTTTTGCTGCTGTCAAAAAAC-
* * *
14376381 CAACTAATGGTATCATGAGCCCTAGTCTTTGAGGGCTTGATTTT-CTTCTGCTGCTTGTTGAA-A
454 CAACAAATGGTATCATGAGCCCAAGTCTTTGAGGGCTTGATTTTGCTTCTGCTACTTGTT-AAGA
* ** * * *
14376444 AAGGCAATTAGCTGTTAAAACCTGTCATCTTCGAGGGCTGCTTGTAAAAAAGATAGCAGCAGCTC
518 AAGACAAGAAGCTGTTAAAGCCTGTCATCTTTGAGGGCTGCTTGTAAAAAAGACAGCAGCAGCTC
* * * *
14376509 ACCCCTGTGAGACTCCCAAACAAGCTTGGCATAAGTTGAAGGAGTTGATGGAGTATGTGCATGAA
583 ACCCCTGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGTTTGTGCATGAA
* * * *
14376574 GACACTCCAC-GACAAGAGGTAGTATGTGTAAGAAGAAATAGGAGTGTAATGAACAAAGGAACAA
648 GACACTCCACAG-CAGGAGGGAGTATGTGCAAGAAGAAATAGGACTGTAATGAACAAAGGAACAA
* * * * *
14376638 GGCAAGATGTAGTTGAAGGAAAGTTACCAACCAAGGGTGTGAAGGAGGAGAAGACTCCATTTGAT
712 GGCAAGATGTATTTGAAGGCAAGTTGCCAGCCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGAT
* ** * *
14376703 GAACAAATCTTTAGCACAAAAGACTAAGATAGTCAAGTGTACGAATTAGATTTGGTTGAGAATGA
777 GAACAAATCTTTGGCACAAAAGACTGGGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAATGA
* * *
14376768 TGCCAAGGTTGAAGATGAATTGCTTAAGCAGGGTCAACTTGAAAAGCATTTTGGGACTTCCAAGC
842 GGCCAAGGTTGAAGATGAATTGCTTGAGCAGGGTCAACTTGAAAAGCATTTTGGGACTGCCAAGC
* * * *
14376833 TCAAAAAAACTTGATGAGTGATAGGTATTTGCAGCATGAAGACCAAGAAGGA
907 TCAAAAAAACTTGATGAATGATTGGTATTTGCAGCATGAAGGCCAAGGAGGA
* * *
14376885 GTGTTGAAAATGGCCAGCCATGTTGCTGTTATGTTTTTATTAAAGTGCATGGTACTATGATGATT
1 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
* * * * * *
14376950 TTGTTGAGTGCCTACAGATTATATGCATGCTGTAGCATTTGTGCATGTTACAACAACATTTTTTC
66 TTGTTGAGTGCATACAGATTGTATGCATGCTGCAGCATTTGTGCATGTTGCAGCAACATATTTTC
* * * * *
14377015 TGTTTTAGTTTCAATGTAATTTAGTTTGGCTGAGAATGAACTTTGATGTTAATGTTTTGAAGGGA
131 TATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGGGA
14377080 TGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGAAATGTTTTAATAGTTCCAATGCTGAT
196 TGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGAAATGTTTTAATAGTTCCAATGCTGAT
* *
14377145 TAGTAGGGTTAGTTAAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGAAT
261 TAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGAAT
* * *
14377210 GAGCAAGTATATCAGTTGTGTAAAGCAGATTACTTCCTTGCTGAACGTTTGTGAGCAAGTAAATT
326 GAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAATT
* *
14377275 GTTCTTTTTTTCTTCCTCCTTTGTTCTCTGTATTGTTCTCTTCTTTTGCTACTGTCAAAAAACCA
391 GTTCTTTGTTTCTTCCTCCTTTGTTCTCTGTATTGTTCTCTTCTTTTGCTGCTGTCAAAAAACCA
* * * **
14377340 ATAAATGGTATCATGATCCCAAGTCTTTGAGGGCTTGTTTTTGCTTCTGCTACTCATTAAGAAAG
456 ACAAATGGTATCATGAGCCCAAGTCTTTGAGGGCTTGATTTTGCTTCTGCTACTTGTTAAGAAAG
*
14377405 ACAAGAAGCTGTTAAAGCCTGTCATCTTTGAGGGCTGCTTGTAAAAAAGACAGCAGCAGCTCATC
521 ACAAGAAGCTGTTAAAGCCTGTCATCTTTGAGGGCTGCTTGTAAAAAAGACAGCAGCAGCTCACC
* * * * * * *
14377470 CCTGTAAGACT-CTAGAACAAGCTTGGGATAAGTTGTAGGAGTTAATTGAGTTTGTACATGAAGA
586 CCTGTGAGACTCCCA-AACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGTTTGTGCATGAAGA
* * * * *
14377534 CACTCCATAGCAAGAGGGAGTATATGCAAGAACAAATAGGACTGTAATGAACAAAGGAGCAAGGC
650 CACTCCACAGCAGGAGGGAGTATGTGCAAGAAGAAATAGGACTGTAATGAACAAAGGAACAAGGC
* *
14377599 AAGATGTATTTGAAGGCAAGTTGCCAGCCAAGGCTGTAAAGGAGGAGAAGGCTCCATTTGATGAA
715 AAGATGTATTTGAAGGCAAGTTGCCAGCCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATGAA
* *
14377664 CAAATCTTTGGCACAAAAGATTGGGATAGTCAAGTGTGCGAATCAGATTTGGATGAGAATGAGGC
780 CAAATCTTTGGCACAAAAGACTGGGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAATGAGGC
* * * *
14377729 CAAGGTTAAAGATGAATTGCTTGAGCAGGGTTAACTTGAAAAGTATTTTGGGACTGCCAAGCTTA
845 CAAGGTTGAAGATGAATTGCTTGAGCAGGGTCAACTTGAAAAGCATTTTGGGACTGCCAAGCTCA
14377794 AAAAAACTTGATGAATGATTGGTATTTGCAGCATGAAGGCCAAGGAGGA
910 AAAAAACTTGATGAATGATTGGTATTTGCAGCATGAAGGCCAAGGAGGA
* * * *
14377843 GTGTTGAAAATGACCAACCATGTTGCTGTTTTGTTTTTGTTAAAGTGCATGGTACCATGATGATT
1 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
* *
14377908 TTGCTGAGTGCATACATG-TTGTATGCATGCTGCAGCATTTGTGCATGTTGTAGCAACATATTTT
66 TTGTTGAGTGCATACA-GATTGTATGCATGCTGCAGCATTTGTGCATGTTGCAGCAACATATTTT
* * * * * *
14377972 CCATTTTAGTTACAATGTAATTTAGTTTCGTTAAGAATAAACTTTGATGATGATGTTT
130 CTATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTT
14378030 GGTGGTGTAT
Statistics
Matches: 3538, Mismatches: 444, Indels: 64
0.87 0.11 0.02
Matches are distributed among these distances:
954 1 0.00
955 185 0.05
956 993 0.28
957 1206 0.34
958 967 0.27
959 186 0.05
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (958 bp):
GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
TTGTTGAGTGCATACAGATTGTATGCATGCTGCAGCATTTGTGCATGTTGCAGCAACATATTTTC
TATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGGGA
TGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGAAATGTTTTAATAGTTCCAATGCTGAT
TAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGAAT
GAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAATT
GTTCTTTGTTTCTTCCTCCTTTGTTCTCTGTATTGTTCTCTTCTTTTGCTGCTGTCAAAAAACCA
ACAAATGGTATCATGAGCCCAAGTCTTTGAGGGCTTGATTTTGCTTCTGCTACTTGTTAAGAAAG
ACAAGAAGCTGTTAAAGCCTGTCATCTTTGAGGGCTGCTTGTAAAAAAGACAGCAGCAGCTCACC
CCTGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGTTTGTGCATGAAGAC
ACTCCACAGCAGGAGGGAGTATGTGCAAGAAGAAATAGGACTGTAATGAACAAAGGAACAAGGCA
AGATGTATTTGAAGGCAAGTTGCCAGCCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATGAAC
AAATCTTTGGCACAAAAGACTGGGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAATGAGGCC
AAGGTTGAAGATGAATTGCTTGAGCAGGGTCAACTTGAAAAGCATTTTGGGACTGCCAAGCTCAA
AAAAACTTGATGAATGATTGGTATTTGCAGCATGAAGGCCAAGGAGGA
Found at i:14381884 original size:20 final size:20
Alignment explanation
Indices: 14381859--14381897 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14381849 CAGTCTTATG
* *
14381859 AATAGTAGGGTCAAGTCATA
1 AATAGTAGAGTCAAATCATA
14381879 AATAGTAGAGTCAAATCAT
1 AATAGTAGAGTCAAATCAT
14381898 GAACAGTGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.10, G:0.21, T:0.26
Consensus pattern (20 bp):
AATAGTAGAGTCAAATCATA
Found at i:14382340 original size:31 final size:31
Alignment explanation
Indices: 14382303--14382371 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
14382293 AACTGGCTAA
*
14382303 GACTAAAATTTAAAAATTTAAAAAGTACAAG
1 GACTAAAATTTAAAAATTCAAAAAGTACAAG
** *
14382334 GACTAAAATTTACTAATTCAAAAAGTATAAG
1 GACTAAAATTTAAAAATTCAAAAAGTACAAG
14382365 GACTAAA
1 GACTAAA
14382372 GTTGATCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.55, C:0.09, G:0.10, T:0.26
Consensus pattern (31 bp):
GACTAAAATTTAAAAATTCAAAAAGTACAAG
Found at i:14382513 original size:19 final size:20
Alignment explanation
Indices: 14382483--14382527 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
14382473 ATTTTTGTCA
*
14382483 ATAAAGTAATTAATGTAGCG
1 ATAAAGTAATTAATGAAGCG
*
14382503 ATAAA-TAATTAATGAAGTG
1 ATAAAGTAATTAATGAAGCG
14382522 ATAAAG
1 ATAAAG
14382528 AGACTTGTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.51, C:0.02, G:0.18, T:0.29
Consensus pattern (20 bp):
ATAAAGTAATTAATGAAGCG
Found at i:14382703 original size:72 final size:72
Alignment explanation
Indices: 14382618--14382762 Score: 272
Period size: 72 Copynumber: 2.0 Consensus size: 72
14382608 CTTGTTAAAA
14382618 AAAATTGATTAGAGTTGTAATACAGTTTGTTATTTGTTTAATCTGCAATTCACAGTAATGGAGAA
1 AAAATTGATTAGAGTTGTAATACAGTTTGTTATTTGTTTAATCTGCAATTCACAGTAATGGAGAA
14382683 GAGGTTT
66 GAGGTTT
* *
14382690 AAAATTGATTAGAGTTGTAATGCAGTTTGTTATTTGTTTAATTTGCAATTCACAGTAATGGAGAA
1 AAAATTGATTAGAGTTGTAATACAGTTTGTTATTTGTTTAATCTGCAATTCACAGTAATGGAGAA
14382755 GAGGTTT
66 GAGGTTT
14382762 A
1 A
14382763 GTATCCAAGA
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.33, C:0.06, G:0.21, T:0.39
Consensus pattern (72 bp):
AAAATTGATTAGAGTTGTAATACAGTTTGTTATTTGTTTAATCTGCAATTCACAGTAATGGAGAA
GAGGTTT
Found at i:14384987 original size:23 final size:24
Alignment explanation
Indices: 14384957--14385011 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
14384947 ACGCGAGACA
14384957 CTCATTTACC-CCTTCTTTTCTTC
1 CTCATTTACCTCCTTCTTTTCTTC
* *
14384980 CTCATTTACCTCTTTTTTTTCTTC
1 CTCATTTACCTCCTTCTTTTCTTC
14385004 CTCATTTA
1 CTCATTTA
14385012 TTGCCTTTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 10 0.34
24 19 0.66
ACGTcount: A:0.11, C:0.33, G:0.00, T:0.56
Consensus pattern (24 bp):
CTCATTTACCTCCTTCTTTTCTTC
Found at i:14385639 original size:49 final size:48
Alignment explanation
Indices: 14385582--14385679 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 48
14385572 GCCCGGAATG
*
14385582 ACCCAAATATATTATGTTATAAAAGTTAATTAATATAATTAAACCTATT
1 ACCCAAATATATTATGTTATAAAAATTAATT-ATATAATTAAACCTATT
14385631 ACCCAAATATATTATGTTATAAAAATTAATTATATAATTAAACCTATT
1 ACCCAAATATATTATGTTATAAAAATTAATTATATAATTAAACCTATT
14385679 A
1 A
14385680 ATTATATAAC
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 18 0.38
49 30 0.62
ACGTcount: A:0.48, C:0.10, G:0.03, T:0.39
Consensus pattern (48 bp):
ACCCAAATATATTATGTTATAAAAATTAATTATATAATTAAACCTATT
Found at i:14385680 original size:21 final size:22
Alignment explanation
Indices: 14385655--14385703 Score: 73
Period size: 24 Copynumber: 2.2 Consensus size: 22
14385645 TGTTATAAAA
14385655 ATTAATTATAT-AATTAAACCT
1 ATTAATTATATAAATTAAACCT
14385676 ATTAATTATATAACAATTAAACCT
1 ATTAATTATAT-A-AATTAAACCT
14385700 ATTA
1 ATTA
14385704 CTCAAAACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 11 0.44
24 14 0.56
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (22 bp):
ATTAATTATATAAATTAAACCT
Found at i:14386020 original size:36 final size:37
Alignment explanation
Indices: 14385980--14386052 Score: 103
Period size: 39 Copynumber: 1.9 Consensus size: 37
14385970 ATTTTAAAAA
*
14385980 TTATA-TTTAATACAATAAAATATTTATTATATTTAT
1 TTATATTTTAATACAATAAAACATTTATTATATTTAT
*
14386016 TTATATTTTTTAATATAATAAAACATTTATTATATTT
1 TTATA--TTTTAATACAATAAAACATTTATTATATTT
14386053 GTGATAGTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 5 0.16
39 27 0.84
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (37 bp):
TTATATTTTAATACAATAAAACATTTATTATATTTAT
Found at i:14397791 original size:31 final size:31
Alignment explanation
Indices: 14397745--14397809 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
14397735 GTTTGGGTTA
* *
14397745 CAAATTGAACGTTGAAGCCAAACTT-AGGTAC
1 CAAATTGAACATTGAAACCAAA-TTCAGGTAC
* *
14397776 CAAATTGAATATTGAAACTAAATTCAGGTAC
1 CAAATTGAACATTGAAACCAAATTCAGGTAC
14397807 CAA
1 CAA
14397810 GTAGTATATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 2 0.07
31 27 0.93
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.25
Consensus pattern (31 bp):
CAAATTGAACATTGAAACCAAATTCAGGTAC
Found at i:14412146 original size:12 final size:12
Alignment explanation
Indices: 14412129--14412159 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
14412119 GCCACACAGT
14412129 CGTGTGCTAGGC
1 CGTGTGCTAGGC
*
14412141 CGTGTGGTAGGC
1 CGTGTGCTAGGC
14412153 CGTGTGC
1 CGTGTGC
14412160 GACACATGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.06, C:0.23, G:0.45, T:0.26
Consensus pattern (12 bp):
CGTGTGCTAGGC
Found at i:14413090 original size:18 final size:19
Alignment explanation
Indices: 14413069--14413105 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
14413059 TCTCTGGACT
*
14413069 TTTGGGGTTTT-ATTTTGG
1 TTTGGGATTTTAATTTTGG
14413087 TTTGGGATTTTAATTTTGG
1 TTTGGGATTTTAATTTTGG
14413106 ATTTCTACGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.11, C:0.00, G:0.30, T:0.59
Consensus pattern (19 bp):
TTTGGGATTTTAATTTTGG
Found at i:14413175 original size:19 final size:19
Alignment explanation
Indices: 14413151--14413191 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
14413141 AAAACATTTC
14413151 TTTTTCTGTAATCAACCGA
1 TTTTTCTGTAATCAACCGA
14413170 TTTTTCTGTAATCAACCGA
1 TTTTTCTGTAATCAACCGA
14413189 TTT
1 TTT
14413192 CGAGAAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.10, T:0.46
Consensus pattern (19 bp):
TTTTTCTGTAATCAACCGA
Found at i:14414494 original size:13 final size:13
Alignment explanation
Indices: 14414476--14414503 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
14414466 TTTTTTATGT
14414476 CTATAAATATAGA
1 CTATAAATATAGA
14414489 CTATAAATATAGA
1 CTATAAATATAGA
14414502 CT
1 CT
14414504 TTGGAGCAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.11, G:0.07, T:0.32
Consensus pattern (13 bp):
CTATAAATATAGA
Found at i:14415669 original size:28 final size:29
Alignment explanation
Indices: 14415613--14415670 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 29
14415603 GGGGTTCGAG
* *
14415613 TTTAGGGTTTGTGATTCTATGTTTGGGGT
1 TTTAGGGTTTGAGATTCTATGTTTAGGGT
14415642 TTTA-GGTTTGAGATTCTA-GATTTAGGGT
1 TTTAGGGTTTGAGATTCTATG-TTTAGGGT
14415670 T
1 T
14415671 CAAGGTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 1 0.04
28 21 0.81
29 4 0.15
ACGTcount: A:0.16, C:0.03, G:0.31, T:0.50
Consensus pattern (29 bp):
TTTAGGGTTTGAGATTCTATGTTTAGGGT
Found at i:14415676 original size:28 final size:28
Alignment explanation
Indices: 14415618--14415676 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
14415608 TCGAGTTTAG
* * **
14415618 GGTTTGTGATTCTATGTTTGGGGTTTTA
1 GGTTTGAGATTCTATGTTTAGGGTTCAA
14415646 GGTTTGAGATTCTA-GATTTAGGGTTCAA
1 GGTTTGAGATTCTATG-TTTAGGGTTCAA
14415674 GGT
1 GGT
14415677 AAAAAAATTG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 1 0.04
28 25 0.96
ACGTcount: A:0.17, C:0.05, G:0.32, T:0.46
Consensus pattern (28 bp):
GGTTTGAGATTCTATGTTTAGGGTTCAA
Found at i:14419826 original size:28 final size:28
Alignment explanation
Indices: 14419782--14419835 Score: 92
Period size: 28 Copynumber: 1.9 Consensus size: 28
14419772 ATATTATTAA
14419782 TATAATATATATATATGTTATAATAAGG
1 TATAATATATATATATGTTATAATAAGG
14419810 TATAATATAT-TATTATGTTATAATAA
1 TATAATATATATA-TATGTTATAATAA
14419836 ACATTAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 2 0.08
28 23 0.92
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46
Consensus pattern (28 bp):
TATAATATATATATATGTTATAATAAGG
Found at i:14420541 original size:2 final size:2
Alignment explanation
Indices: 14420534--14420569 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
14420524 TTATTAATTA
* *
14420534 AT AT AT AT AT AT AT AT AC AT AC AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14420570 CTATTGTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:14421463 original size:41 final size:41
Alignment explanation
Indices: 14421418--14421632 Score: 297
Period size: 41 Copynumber: 5.2 Consensus size: 41
14421408 GGCTCGGTGC
* * * **
14421418 CTAGCAGGCTTAATGCCAGTGATATGTTTCAGACTTTAAGT
1 CTAGCAGGCTTGATGCCGGTGAAACATTTCAGACTTTAAGT
14421459 CTAGCAGGCTTG-TCGCCGGTGAAACATTTCAGACTTTAAGT
1 CTAGCAGGCTTGAT-GCCGGTGAAACATTTCAGACTTTAAGT
* *
14421500 CTAGCAGGCTTGACGTCGGTGAAACATTTCAGACTTTAAGT
1 CTAGCAGGCTTGATGCCGGTGAAACATTTCAGACTTTAAGT
* * *
14421541 CTAGCGGGCTTGATACCGGTGAAACATTTTAGACTTTAAGT
1 CTAGCAGGCTTGATGCCGGTGAAACATTTCAGACTTTAAGT
** *
14421582 CTAGCAGGCTTGACACCGGTGAAACATTTCAGACTTTATGT
1 CTAGCAGGCTTGATGCCGGTGAAACATTTCAGACTTTAAGT
14421623 CTAGCAGGCT
1 CTAGCAGGCT
14421633 AAGTGCCAGT
Statistics
Matches: 156, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
40 1 0.01
41 155 0.99
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (41 bp):
CTAGCAGGCTTGATGCCGGTGAAACATTTCAGACTTTAAGT
Found at i:14421835 original size:2 final size:2
Alignment explanation
Indices: 14421828--14421854 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14421818 AATATGGATT
14421828 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
14421855 TAAATTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14446957 original size:19 final size:20
Alignment explanation
Indices: 14446923--14446961 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
14446913 CTTCATAAAT
14446923 AATTCAAAACTATTTTCAAA
1 AATTCAAAACTATTTTCAAA
*
14446943 AATTCCAAA-TATTTTCAAA
1 AATTCAAAACTATTTTCAAA
14446962 CCCATTCCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
AATTCAAAACTATTTTCAAA
Found at i:14447776 original size:26 final size:26
Alignment explanation
Indices: 14447742--14447791 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
14447732 CCCACACACC
* *
14447742 AATATTGCAGCATAGCTGCCAGTAAT
1 AATAATGCAGCAGAGCTGCCAGTAAT
*
14447768 AATAATGCAGCAGAGCTGCTAGTA
1 AATAATGCAGCAGAGCTGCCAGTA
14447792 CAGTATCTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (26 bp):
AATAATGCAGCAGAGCTGCCAGTAAT
Found at i:14448040 original size:27 final size:27
Alignment explanation
Indices: 14447985--14448055 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
14447975 CCTAACGGAA
* **
14447985 GTATTATGGTAATTTTACCCATCGGGG
1 GTATTTTGGTAATTTTACCCATCAAGG
* *
14448012 GTATTTTGGTAATTTTACCTATTAAGG
1 GTATTTTGGTAATTTTACCCATCAAGG
**
14448039 GTATTTCAGTAATTTTA
1 GTATTTTGGTAATTTTA
14448056 ATGACCATTT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.25, C:0.10, G:0.20, T:0.45
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACCCATCAAGG
Found at i:14450320 original size:28 final size:27
Alignment explanation
Indices: 14450276--14450337 Score: 65
Period size: 28 Copynumber: 2.3 Consensus size: 27
14450266 CTATTATATT
* **
14450276 TATAAAATAAATTAATATTTATTAATAA
1 TATAAAATAAATCAATATAAATTAA-AA
14450304 TATAAAATATAA-CAATATAAATTAAAA
1 TATAAAATA-AATCAATATAAATTAAAA
14450331 TA-AAAAT
1 TATAAAAT
14450338 TTATCTTTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.17
27 4 0.13
28 19 0.63
29 2 0.07
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (27 bp):
TATAAAATAAATCAATATAAATTAAAA
Found at i:14460744 original size:30 final size:30
Alignment explanation
Indices: 14460683--14460744 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
14460673 ACTTATTTTA
*
14460683 TTGTTAATTTTGTTATTATTTTTAAGACAT
1 TTGTTAATTTTGTTATTATTTTGAAGACAT
14460713 TTGTTAATTTTGTTATTATTTTAGAAG-CAT
1 TTGTTAATTTTGTTATTATTTT-GAAGACAT
14460743 TT
1 TT
14460745 ACTTGTTAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 27 0.90
31 3 0.10
ACGTcount: A:0.26, C:0.03, G:0.11, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTGAAGACAT
Found at i:14460899 original size:12 final size:12
Alignment explanation
Indices: 14460869--14460901 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
14460859 TATATATTTT
14460869 AAAATT-ATATA
1 AAAATTAATATA
14460880 AAAA-TAATATA
1 AAAATTAATATA
14460891 AAAATTAATAT
1 AAAATTAATAT
14460902 GGACGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:14461290 original size:18 final size:21
Alignment explanation
Indices: 14461253--14461290 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 21
14461243 GTTGGGTTGG
14461253 ATTAAGTTTATATCATGTTTA
1 ATTAAGTTTATATCATGTTTA
14461274 ATTAA-TTTAT-T-ATGTTT
1 ATTAAGTTTATATCATGTTT
14461291 GGATATCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.35
19 1 0.06
20 5 0.29
21 5 0.29
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.58
Consensus pattern (21 bp):
ATTAAGTTTATATCATGTTTA
Found at i:14464900 original size:41 final size:41
Alignment explanation
Indices: 14464853--14465127 Score: 410
Period size: 41 Copynumber: 6.7 Consensus size: 41
14464843 TAAAAATAAG
* *
14464853 CTTTAGCGGCATTTTTTGGA-AAGCGCCGCTAATGCTCAGGT
1 CTTTAGCGGCGTTTTTT-AATAAGCGCCGCTAATGCTCAGGT
* *
14464894 CTTTAGCGGCATTTTTGAATAAGCGCCGCTAATGCTCAGGT
1 CTTTAGCGGCGTTTTTTAATAAGCGCCGCTAATGCTCAGGT
* * *
14464935 CTGTAGCGGCG-GTTTTAATAAGCGCCGCTAATTCTCAGGT
1 CTTTAGCGGCGTTTTTTAATAAGCGCCGCTAATGCTCAGGT
14464975 CTTTAGCGGCGTTTTTTGAATAAGCGCCGCTAATGCTCAGGT
1 CTTTAGCGGCGTTTTTT-AATAAGCGCCGCTAATGCTCAGGT
* * *
14465017 CTTTAGCGGCGTTTTTTAATAAGCGCCACTAATTCTCATGT
1 CTTTAGCGGCGTTTTTTAATAAGCGCCGCTAATGCTCAGGT
*
14465058 CTTTAGCGGCGTTTTTTAATAAGCGCCGCGAATGCTCAGGT
1 CTTTAGCGGCGTTTTTTAATAAGCGCCGCTAATGCTCAGGT
*
14465099 CTTTAGCGGCCTTTTTTAATAAGCGCCGC
1 CTTTAGCGGCGTTTTTTAATAAGCGCCGC
14465128 AAAAACATTT
Statistics
Matches: 213, Mismatches: 18, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
40 37 0.17
41 136 0.64
42 40 0.19
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.33
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTTAATAAGCGCCGCTAATGCTCAGGT
Found at i:14465551 original size:14 final size:14
Alignment explanation
Indices: 14465528--14465557 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14465518 ATGGAATTAG
*
14465528 GGATTTTGATTTAA
1 GGATTGTGATTTAA
14465542 GGATTGTGATTTAA
1 GGATTGTGATTTAA
14465556 GG
1 GG
14465558 TTTATTGGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.30, T:0.43
Consensus pattern (14 bp):
GGATTGTGATTTAA
Found at i:14465734 original size:20 final size:20
Alignment explanation
Indices: 14465688--14465734 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
14465678 ATTAAATAAT
14465688 GTTTAGGGGTTAGGGATTTAG
1 GTTTA-GGGTTAGGGATTTAG
*
14465709 GGTTAGGGTTAGGG-TTTAG
1 GTTTAGGGTTAGGGATTTAG
14465728 GATTTAG
1 G-TTTAG
14465735 ATTAATTAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 6 0.26
20 13 0.57
21 4 0.17
ACGTcount: A:0.19, C:0.00, G:0.43, T:0.38
Consensus pattern (20 bp):
GTTTAGGGTTAGGGATTTAG
Found at i:14465902 original size:92 final size:89
Alignment explanation
Indices: 14465690--14465967 Score: 441
Period size: 92 Copynumber: 3.1 Consensus size: 89
14465680 TAAATAATGT
* * * *
14465690 TTAGGGGTTAGGGATTTAGGGTTAGGGTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAAT
1 TTAGGGGTTAGTGATTCAGGGTCA-AGTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAAT
14465755 TTATATATTAAATAATGTTTAGGGG
65 TTATATATTAAATAATGTTTAGGGG
* *
14465780 TTAGGGGTTAGTGATTC-GAGGTCGAGTTAGGGTTTAGGATTTAGATTAATTAGTATTTTTTAAT
1 TTAGGGGTTAGTGATTCAG-GGTCAAGTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAA-
14465844 TTATATAATATTAAATAATGTTTAGGGG
64 TT-TAT-ATATTAAATAATGTTTAGGGG
14465872 TTAGGGGTTAGTGATTCAGGGTCAAGTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATT
1 TTAGGGGTTAGTGATTCAGGGTCAAGTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATT
*
14465937 TATATATTAAATAATGTTTAGGGT
66 TATATATTAAATAATGTTTAGGGG
14465961 TTAGGGG
1 TTAGGGG
14465968 CAGGGGTTTG
Statistics
Matches: 174, Mismatches: 9, Indels: 11
0.90 0.05 0.06
Matches are distributed among these distances:
89 65 0.37
90 23 0.13
91 5 0.03
92 80 0.46
93 1 0.01
ACGTcount: A:0.28, C:0.01, G:0.27, T:0.44
Consensus pattern (89 bp):
TTAGGGGTTAGTGATTCAGGGTCAAGTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATT
TATATATTAAATAATGTTTAGGGG
Found at i:14465937 original size:181 final size:175
Alignment explanation
Indices: 14465629--14465967 Score: 527
Period size: 181 Copynumber: 1.9 Consensus size: 175
14465619 GTGTTAGCTA
*
14465629 AGTTAGAGTTTAGGGTTTAGACTAATTAATATATTTTAAATTATATAATATTAAATAATGTTTAG
1 AGTTAGAGTTTAGGATTTAGACTAATTAATATATTTTAAATTATATAATATTAAATAATGTTTAG
* *
14465694 GGGTTAGGGATTTAGGGTTAGGGTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTAT
66 GGGTTAGGGATTTAGGGTCAGAGTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTAT
14465759 ATATTAAATAATGTTTAGGGGTTAGGGGTTAGTGATTCGAGGTCG
131 ATATTAAATAATGTTTAGGGGTTAGGGGTTAGTGATTCGAGGTCG
* * * * *
14465804 AGTTAGGGTTTAGGATTTAGATTAATTAGTATTTTTTAATTTATATAATATTAAATAATGTTTAG
1 AGTTAGAGTTTAGGATTTAGACTAATTAATATATTTTAAATTATATAATATTAAATAATGTTTAG
14465869 GGGTTAGGGGTTAGTGATTCAGGGTCA-AGTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTT
66 GGGTTA-GGG--A-T--TT-AGGGTCAGAGTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTT
*
14465933 AATTTATATATTAAATAATGTTTAGGGTTTAGGGG
124 AATTTATATATTAAATAATGTTTAGGGGTTAGGGG
14465968 CAGGGGTTTG
Statistics
Matches: 148, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
175 65 0.44
176 3 0.02
178 1 0.01
179 1 0.01
181 72 0.49
182 6 0.04
ACGTcount: A:0.30, C:0.01, G:0.24, T:0.44
Consensus pattern (175 bp):
AGTTAGAGTTTAGGATTTAGACTAATTAATATATTTTAAATTATATAATATTAAATAATGTTTAG
GGGTTAGGGATTTAGGGTCAGAGTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTAT
ATATTAAATAATGTTTAGGGGTTAGGGGTTAGTGATTCGAGGTCG
Found at i:14465995 original size:21 final size:21
Alignment explanation
Indices: 14465952--14465996 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
14465942 ATTAAATAAT
*
14465952 GTTTAGGGTTTAGGGGCAGGG
1 GTTTAGGGTTTAGGGGCAAGG
* **
14465973 GTTTGGGGTTTAGGGTTAAGG
1 GTTTAGGGTTTAGGGGCAAGG
14465994 GTT
1 GTT
14465997 AAGAGTTAGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.13, C:0.02, G:0.49, T:0.36
Consensus pattern (21 bp):
GTTTAGGGTTTAGGGGCAAGG
Found at i:14466498 original size:2 final size:2
Alignment explanation
Indices: 14466486--14466515 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
14466476 TATTTAAGAG
14466486 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14466516 GATCACTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:14466740 original size:21 final size:20
Alignment explanation
Indices: 14466701--14466745 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
14466691 GGACAGGACC
14466701 AAAATATAAGAAAAAATAAA
1 AAAATATAAGAAAAAATAAA
14466721 AAAATATAA-AAAGGAAATAAA
1 AAAATATAAGAAA--AAATAAA
14466742 AAAA
1 AAAA
14466746 CTAAAATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.13
20 9 0.39
21 11 0.48
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (20 bp):
AAAATATAAGAAAAAATAAA
Found at i:14466813 original size:23 final size:22
Alignment explanation
Indices: 14466766--14466820 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
14466756 TAAATTTATC
14466766 AAAAACTTT--TAAATATTACT
1 AAAAACTTTAATAAATATTACT
* *
14466786 TAAAACTTTAATAATTATTTACT
1 AAAAACTTTAATAAATA-TTACT
*
14466809 AAAAATTTTAAT
1 AAAAACTTTAAT
14466821 GAAAATACAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
20 8 0.29
22 5 0.18
23 15 0.54
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (22 bp):
AAAAACTTTAATAAATATTACT
Found at i:14468663 original size:18 final size:18
Alignment explanation
Indices: 14468612--14468663 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 18
14468602 TCAAACTTAC
14468612 ATAACTTACATTAATATT
1 ATAACTTACATTAATATT
* *
14468630 A-AACATA-A--ATTA-T
1 ATAACTTACATTAATATT
14468643 ATAACTTACATTAATATT
1 ATAACTTACATTAATATT
14468661 ATA
1 ATA
14468664 CATAAATTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 10
0.64 0.10 0.26
Matches are distributed among these distances:
13 2 0.08
14 8 0.32
15 1 0.04
16 1 0.04
17 8 0.32
18 5 0.20
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAACTTACATTAATATT
Found at i:14468715 original size:9 final size:9
Alignment explanation
Indices: 14468701--14469325 Score: 218
Period size: 9 Copynumber: 70.3 Consensus size: 9
14468691 AATACCGGAA
14468701 TTACATAAC
1 TTACATAAC
*
14468710 TTACATTAATA
1 TTACA-TAA-C
*
14468721 TTAAACATAAA
1 TT--ACATAAC
14468732 TTACATAAC
1 TTACATAAC
*
14468741 TTACATTAATAT
1 TTACA-T-A-AC
*
14468753 TATACATAAA
1 T-TACATAAC
14468763 TTACATAAC
1 TTACATAAC
14468772 TTA-ATTAA-
1 TTACA-TAAC
*
14468780 TTA-AT-AT
1 TTACATAAC
*
14468787 TATACATAAA
1 T-TACATAAC
14468797 TTACATAAC
1 TTACATAAC
* *
14468806 TTGCATTAATAT
1 TTACA-T-A-AC
*
14468818 TATACATAAA
1 T-TACATAAC
14468828 TTACATAAC
1 TTACATAAC
* *
14468837 TTGCATTATAA
1 TTACA-TA-AC
*
14468848 TTATTCATAAA
1 TTA--CATAAC
14468859 TTACATAAC
1 TTACATAAC
14468868 TTA-ATTAA-
1 TTACA-TAAC
*
14468876 TTA-AT-AT
1 TTACATAAC
14468883 TATACATAAC
1 T-TACATAAC
14468893 TTACATAAC
1 TTACATAAC
14468902 TTAC--AAC
1 TTACATAAC
14468909 TTACATAAC
1 TTACATAAC
* ***
14468918 TTACTTTTTT
1 TTAC-ATAAC
*
14468928 TTA-ATTA-
1 TTACATAAC
*
14468935 TT-CATAAA
1 TTACATAAC
14468943 TTACATAAC
1 TTACATAAC
* *
14468952 TTACTTAAT
1 TTACATAAC
*
14468961 TTTCATAA-
1 TTACATAAC
*
14468969 -TAAATAAC
1 TTACATAAC
14468977 TTACATAAC
1 TTACATAAC
*
14468986 TTACACTAATAT
1 TTACA-T-A-AC
*
14468998 TATACATAAA
1 T-TACATAAC
*
14469008 TGACATAAC
1 TTACATAAC
14469017 TTA-ATTAA-
1 TTACA-TAAC
*
14469025 TATACATAAA
1 T-TACATAAC
14469035 TTACATAAC
1 TTACATAAC
*
14469044 TTACATTAATGT
1 TTACA-TAA--C
*
14469056 TATACATAAA
1 T-TACATAAC
14469066 TTACATAAC
1 TTACATAAC
**
14469075 TTAGTTAA-
1 TTACATAAC
*
14469083 TT-CAT-AT
1 TTACATAAC
14469090 TATACATAAC
1 T-TACATAAC
14469100 TTACATAAC
1 TTACATAAC
14469109 TTACATAAC
1 TTACATAAC
14469118 TTAC--AAC
1 TTACATAAC
14469125 TTAC--AAC
1 TTACATAAC
14469132 TTACATAAC
1 TTACATAAC
14469141 TTACAT---
1 TTACATAAC
***
14469147 TTTTTTAAC
1 TTACATAAC
* *
14469156 TATTCATAAA
1 T-TACATAAC
14469166 TTACATAAC
1 TTACATAAC
* *
14469175 TTACTTAAT
1 TTACATAAC
*
14469184 TTTCATAA-
1 TTACATAAC
*
14469192 -TAAATAAC
1 TTACATAAC
14469200 TTACATAAC
1 TTACATAAC
14469209 TTACATAA-
1 TTACATAAC
14469217 -TACATAAC
1 TTACATAAC
* *
14469225 TTATATGAC
1 TTACATAAC
14469234 TTACATAAC
1 TTACATAAC
14469243 TTACAT-A-
1 TTACATAAC
14469250 --ACATAA-
1 TTACATAAC
14469256 TTATCATAA-
1 TTA-CATAAC
*
14469265 -TACACAAC
1 TTACATAAC
*
14469273 TTACATAAT
1 TTACATAAC
*
14469282 TTTCATAA-
1 TTACATAAC
*
14469290 -TAAATAAC
1 TTACATAAC
14469298 TTACATAA-
1 TTACATAAC
14469306 -TACATAAC
1 TTACATAAC
*
14469314 TTACATAGC
1 TTACATAAC
14469323 TTA
1 TTA
14469326 ATTATACTTA
Statistics
Matches: 473, Mismatches: 73, Indels: 140
0.69 0.11 0.20
Matches are distributed among these distances:
5 4 0.01
6 7 0.01
7 65 0.14
8 27 0.06
9 277 0.59
10 36 0.08
11 19 0.04
12 18 0.04
13 20 0.04
ACGTcount: A:0.45, C:0.15, G:0.01, T:0.39
Consensus pattern (9 bp):
TTACATAAC
Found at i:14468851 original size:96 final size:96
Alignment explanation
Indices: 14468608--14469218 Score: 542
Period size: 96 Copynumber: 6.5 Consensus size: 96
14468598 TATATCAAAC
*
14468608 TTACATAACTTACATTAATATTAAACATAAATTATATAACTTACATTAATATTATACATAAATTA
1 TTACATAACTTACATTAATATTAAACATAAATTACATAACTTACATTAATATTATACATAAATTA
***
14468673 CATAACTTAATTAATTAA-A--ATACCGGAA
66 CATAACTTAATTAATTAATATTATACATAAA
14468701 TTACATAACTTACATTAATATTAAACATAAATTACATAACTTACATTAATATTATACATAAATTA
1 TTACATAACTTACATTAATATTAAACATAAATTACATAACTTACATTAATATTATACATAAATTA
14468766 CATAACTTAATTAATTAATATTATACATAAA
66 CATAACTTAATTAATTAATATTATACATAAA
* * * *
14468797 TTACATAACTTGCATTAATATTATACATAAATTACATAACTTGCATT-ATAATTATTCATAAATT
1 TTACATAACTTACATTAATATTAAACATAAATTACATAACTTACATTAAT-ATTATACATAAATT
*
14468861 ACATAACTTAATTAATTAATATTATACATAAC
65 ACATAACTTAATTAATTAATATTATACATAAA
* * ** * *
14468893 TTACATAACTTAC---AA-CTT--ACATAACTTAC-T---TT-TTTTTA-ATTATTCATAAATTA
1 TTACATAACTTACATTAATATTAAACATAAATTACATAACTTACATTAATATTATACATAAATTA
* * * * *
14468946 CATAACTTACTTAATT-TTCATAATAAATAAC
66 CATAACTTAATTAATTAAT-ATTATACATAAA
* * *
14468977 TTACATAACTTACACTAATATTATACATAAATGACATAACTTA-ATT-A-A-TATACATAAATTA
1 TTACATAACTTACATTAATATTAAACATAAATTACATAACTTACATTAATATTATACATAAATTA
* *
14469038 CATAACTT-A--CATTAATGTTATACATAAA
66 CATAACTTAATTAATTAATATTATACATAAA
* * * * * * *
14469066 TTACATAACTTAGTTAATTCATATTATACATAACTTACATAACTTACA-TAA-CTTACAACTTAC
1 TTACATAACTTA---CATTAATATTAAACATAAATTACATAACTTACATTAATATTA-TACATA-
** * * *
14469129 AACTTACATAACTTACATTTTTTTA-ACTATTCATAAA
61 AA-TTACATAACTTA-ATTAATTAATATTATACATAAA
* * *
14469166 TTACATAACTTAC-TTAATTTTCATAATAAATAACTTACATAACTTACA-TAATA
1 TTACATAACTTACATTAA-TAT--TAA-ACATAAATTACATAACTTACATTAATA
14469219 CATAACTTAT
Statistics
Matches: 432, Mismatches: 50, Indels: 64
0.79 0.09 0.12
Matches are distributed among these distances:
83 1 0.00
84 53 0.12
85 2 0.00
86 3 0.01
87 2 0.00
88 2 0.00
89 24 0.06
90 20 0.05
91 1 0.00
92 49 0.11
93 88 0.20
94 7 0.02
95 6 0.01
96 111 0.26
97 13 0.03
99 3 0.01
100 44 0.10
101 3 0.01
ACGTcount: A:0.46, C:0.14, G:0.01, T:0.39
Consensus pattern (96 bp):
TTACATAACTTACATTAATATTAAACATAAATTACATAACTTACATTAATATTATACATAAATTA
CATAACTTAATTAATTAATATTATACATAAA
Found at i:14468911 original size:16 final size:16
Alignment explanation
Indices: 14468890--14468921 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
14468880 TATTATACAT
14468890 AACTTACATAACTTAC
1 AACTTACATAACTTAC
14468906 AACTTACATAACTTAC
1 AACTTACATAACTTAC
14468922 TTTTTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (16 bp):
AACTTACATAACTTAC
Found at i:14468918 original size:50 final size:50
Alignment explanation
Indices: 14468859--14468955 Score: 124
Period size: 50 Copynumber: 1.9 Consensus size: 50
14468849 TATTCATAAA
*
14468859 TTACATAACTTAATTAATTAAT-ATTATACATAACTTACATAACTTACAAC
1 TTACATAACTTAATT-ATTAATAATTATACATAAATTACATAACTTACAAC
* * ** *
14468909 TTACATAACTTACTTTTTTTTAATTATTCATAAATTACATAACTTAC
1 TTACATAACTTAATTATTAATAATTATACATAAATTACATAACTTAC
14468956 TTAATTTTCA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
49 3 0.08
50 37 0.93
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.43
Consensus pattern (50 bp):
TTACATAACTTAATTATTAATAATTATACATAAATTACATAACTTACAAC
Found at i:14468978 original size:25 final size:28
Alignment explanation
Indices: 14468928--14468980 Score: 76
Period size: 25 Copynumber: 2.0 Consensus size: 28
14468918 TTACTTTTTT
*
14468928 TTAATTATTCATAAATTACATAACTTAC
1 TTAATTATTCATAAATTAAATAACTTAC
14468956 TTAATT-TTCAT-AA-TAAATAACTTAC
1 TTAATTATTCATAAATTAAATAACTTAC
14468981 ATAACTTACA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 11 0.46
26 2 0.08
27 5 0.21
28 6 0.25
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.43
Consensus pattern (28 bp):
TTAATTATTCATAAATTAAATAACTTAC
Found at i:14469046 original size:58 final size:56
Alignment explanation
Indices: 14468972--14469104 Score: 178
Period size: 58 Copynumber: 2.3 Consensus size: 56
14468962 TTCATAATAA
*
14468972 ATAACTTACATAACTTACACTAATATTATACATAAATGACATAACTTAATTAATATAC
1 ATAAATTACATAACTTACACTAATATTATACATAAATGACATAACTTAATTAAT-T-C
* * * *
14469030 ATAAATTACATAACTTACATTAATGTTATACATAAATTACATAACTTAGTTAATTC
1 ATAAATTACATAACTTACACTAATATTATACATAAATGACATAACTTAATTAATTC
*
14469086 AT-ATTATACATAACTTACA
1 ATAAAT-TACATAACTTACA
14469105 TAACTTACAT
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
55 2 0.03
56 16 0.24
57 1 0.01
58 49 0.72
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.37
Consensus pattern (56 bp):
ATAAATTACATAACTTACACTAATATTATACATAAATGACATAACTTAATTAATTC
Found at i:14469077 original size:31 final size:31
Alignment explanation
Indices: 14468608--14468906 Score: 386
Period size: 31 Copynumber: 9.5 Consensus size: 31
14468598 TATATCAAAC
*
14468608 TTACATAACTTACATTAATATTAAACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
*
14468639 TTATATAACTTACATTAATATTATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
** ***
14468670 TTACATAACTTA-ATTAATTAAAATACCGGAA
1 TTACATAACTTACATTAA-TATTATACATAAA
*
14468701 TTACATAACTTACATTAATATTAAACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
14468732 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
*
14468763 TTACATAACTTAATTAATTAATATTATACATAAA
1 TTACATAACTT-A--CATTAATATTATACATAAA
*
14468797 TTACATAACTTGCATTAATATTATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
* *
14468828 TTACATAACTTGCATT-ATAATTATTCATAAA
1 TTACATAACTTACATTAAT-ATTATACATAAA
* *
14468859 TTACATAACTTAATTAATTAATATTATACATAAC
1 TTACATAACTT-A--CATTAATATTATACATAAA
14468893 TTACATAACTTACA
1 TTACATAACTTACA
14468907 ACTTACATAA
Statistics
Matches: 234, Mismatches: 24, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
30 7 0.03
31 165 0.71
32 6 0.03
33 1 0.00
34 53 0.23
35 2 0.01
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.38
Consensus pattern (31 bp):
TTACATAACTTACATTAATATTATACATAAA
Found at i:14469125 original size:25 final size:24
Alignment explanation
Indices: 14469097--14469318 Score: 93
Period size: 25 Copynumber: 9.0 Consensus size: 24
14469087 TATTATACAT
14469097 AACTTACATAACTTACATAACTTAC
1 AACTTACATAACTTACATAA-TTAC
14469122 AACTTAC--AACTTACATAACTTAC
1 AACTTACATAACTTACATAA-TTAC
* *** *
14469145 -ATTTTTTTAACTATTCATAAATTAC
1 AACTTACATAACT-TACAT-AATTAC
* * * * *
14469170 ATAACTTACTTAATTTTCATAATAAAT
1 --AACTTACATAACTTACATAAT-TAC
14469197 AACTTACATAACTTACATAA-TAC
1 AACTTACATAACTTACATAATTAC
* *
14469220 ATAACTTATATGACTTACATAACTTAC
1 --AACTTACATAACTTACATAA-TTAC
* *
14469247 -A-TAACATAA-TTATCATAATACAC
1 AACTTACATAACTTA-CATAAT-TAC
* * * *
14469270 AACTTACATAATTTTCATAATAAAT
1 AACTTACATAACTTACATAAT-TAC
14469295 AACTTACATAA--TACATAACTTAC
1 AACTTACATAACTTACATAA-TTAC
14469318 A
1 A
14469319 TAGCTTAATT
Statistics
Matches: 151, Mismatches: 28, Indels: 38
0.70 0.13 0.18
Matches are distributed among these distances:
22 7 0.05
23 37 0.25
24 7 0.05
25 76 0.50
26 7 0.05
27 9 0.06
28 8 0.05
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36
Consensus pattern (24 bp):
AACTTACATAACTTACATAATTAC
Found at i:14469136 original size:23 final size:22
Alignment explanation
Indices: 14469097--14469145 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 22
14469087 TATTATACAT
14469097 AACTTACATAACTTACATAACTTAC
1 AACTTAC--AACTTACA-AACTTAC
14469122 AACTTACAACTTACATAACTTAC
1 AACTTACAACTTACA-AACTTAC
14469145 A
1 A
14469146 TTTTTTTAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 17 0.71
25 7 0.29
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.31
Consensus pattern (22 bp):
AACTTACAACTTACAAACTTAC
Found at i:14469175 original size:34 final size:33
Alignment explanation
Indices: 14468909--14469214 Score: 185
Period size: 34 Copynumber: 9.5 Consensus size: 33
14468899 AACTTACAAC
* * *
14468909 TTACATAACTTACTTTTTTTTAATTATTCATAAA
1 TTACATAACTTACATTATTTTAA-TATACATAAA
* * *
14468943 TTACATAACTTAC-TTAATTTTCATAATAAATAAC
1 TTACATAACTTACATT-ATTTTAAT-ATACATAAA
* * *
14468977 TTACATAACTTACACTA--ATATTATACATAAA
1 TTACATAACTTACATTATTTTAATATACATAAA
*
14469008 TGACATAACTT--A--A--TTAATATACATAAA
1 TTACATAACTTACATTATTTTAATATACATAAA
* *
14469035 TTACATAACTTACATTAATGT--TATACATAAA
1 TTACATAACTTACATTATTTTAATATACATAAA
* * * *
14469066 TTACATAACTTA-GTTAATTCATATTATACATAAC
1 TTACATAACTTACATT-ATT-TTAATATACATAAA
* ** *
14469100 TTACATAACTTACATAACTTACAACT-TAC--AAC
1 TTACATAACTTACATTA-TTTTAA-TATACATAAA
* *
14469132 TTACATAACTTACATTTTTTTAACTATTCATAAA
1 TTACATAACTTACATTATTTTAA-TATACATAAA
* * *
14469166 TTACATAACTTAC-TTAATTTTCATAATAAATAAC
1 TTACATAACTTACATT-ATTTTAAT-ATACATAAA
14469200 TTACATAACTTACAT
1 TTACATAACTTACAT
14469215 AATACATAAC
Statistics
Matches: 215, Mismatches: 35, Indels: 43
0.73 0.12 0.15
Matches are distributed among these distances:
27 23 0.11
29 2 0.01
30 2 0.01
31 48 0.22
32 23 0.11
33 7 0.03
34 104 0.48
35 6 0.03
ACGTcount: A:0.43, C:0.15, G:0.01, T:0.41
Consensus pattern (33 bp):
TTACATAACTTACATTATTTTAATATACATAAA
Found at i:14469220 original size:16 final size:16
Alignment explanation
Indices: 14469201--14469320 Score: 107
Period size: 16 Copynumber: 7.9 Consensus size: 16
14469191 ATAAATAACT
14469201 TACATAACTTACATAA
1 TACATAACTTACATAA
* *
14469217 TACATAACTTATATGACT
1 TACATAACTTACAT-A-A
14469235 TACATAACTTACAT-A
1 TACATAACTTACATAA
14469250 -ACATAA-TTATCATAA
1 TACATAACTTA-CATAA
*
14469265 TACACAACTTACATAA
1 TACATAACTTACATAA
14469281 T---T---TT-CATAA
1 TACATAACTTACATAA
*
14469290 TAAATAACTTACATAA
1 TACATAACTTACATAA
14469306 TACATAACTTACATA
1 TACATAACTTACATA
14469321 GCTTAATTAT
Statistics
Matches: 84, Mismatches: 7, Indels: 26
0.72 0.06 0.22
Matches are distributed among these distances:
9 6 0.07
10 2 0.02
12 1 0.01
13 3 0.04
14 9 0.11
15 3 0.04
16 43 0.51
17 4 0.05
18 13 0.15
ACGTcount: A:0.47, C:0.17, G:0.01, T:0.34
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:14469236 original size:34 final size:33
Alignment explanation
Indices: 14469066--14469281 Score: 121
Period size: 34 Copynumber: 6.5 Consensus size: 33
14469056 TATACATAAA
** *
14469066 TTACATAACTTAGTTAATTCAT-ATTATACATAAC
1 TTACATAACTTACATAATACATAATTAT-CAT-AC
*
14469100 TTACATAACTTACATAACTTACA-ACTTA-CA-AC
1 TTACATAACTTACATAA--TACATAATTATCATAC
* *** * *
14469132 TTACATAACTTACAT-TTTTTTAACTATTCATAAA
1 TTACATAACTTACATAATACATAATTA-TCAT-AC
* * *
14469166 TTACATAACTTACTTAATTTTCATAA-TA-AATAAC
1 TTACATAACTTACATAA--TACATAATTATCAT-AC
14469200 TTACATAACTTACATAATACATAACTTAT-ATGAC
1 TTACATAACTTACATAATACATAA-TTATCAT-AC
14469234 TTACATAACTTACAT-A-ACATAATTATCATA-
1 TTACATAACTTACATAATACATAATTATCATAC
* *
14469264 ATACACAACTTACATAAT
1 TTACATAACTTACATAAT
14469282 TTTCATAATA
Statistics
Matches: 143, Mismatches: 22, Indels: 36
0.71 0.11 0.18
Matches are distributed among these distances:
29 1 0.01
30 16 0.11
31 6 0.04
32 33 0.23
33 1 0.01
34 73 0.51
36 8 0.06
37 5 0.03
ACGTcount: A:0.44, C:0.18, G:0.01, T:0.38
Consensus pattern (33 bp):
TTACATAACTTACATAATACATAATTATCATAC
Found at i:14475176 original size:43 final size:42
Alignment explanation
Indices: 14475036--14475176 Score: 140
Period size: 43 Copynumber: 3.3 Consensus size: 42
14475026 CGCTAATGAT
* *
14475036 AGCGCCGCTAAAGGTCTTAATCTTTAGCGGCGCTTCTAGCAAA
1 AGCGCCGCTAAAGGTCTTAGTCTTTAGCGGCGCTTCT-GCTAA
* ** * **
14475079 AACGCCGCTAAAGACCCT-GATCTTTAGCGGCGCTTCCACTAA
1 AGCGCCGCTAAAGGTCTTAG-TCTTTAGCGGCGCTTCTGCTAA
* * * *
14475121 AGCGCCGTTAAAGGTCTTAGTCTTCAGCGGCGTTTGTGCTAGA
1 AGCGCCGCTAAAGGTCTTAGTCTTTAGCGGCGCTTCTGCTA-A
14475164 AGCGCCGCTAAAG
1 AGCGCCGCTAAAG
14475177 ATCAACACCT
Statistics
Matches: 76, Mismatches: 19, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
42 32 0.42
43 44 0.58
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (42 bp):
AGCGCCGCTAAAGGTCTTAGTCTTTAGCGGCGCTTCTGCTAA
Found at i:14475189 original size:85 final size:85
Alignment explanation
Indices: 14475036--14475196 Score: 198
Period size: 85 Copynumber: 1.9 Consensus size: 85
14475026 CGCTAATGAT
* *** *
14475036 AGCGCCGCTAAAGGTCTTAATCTTTAGCGGCGCTTCTAGCAAAAACGCCGCTAAAGACCCTGATC
1 AGCGCCGCTAAAGGTCTTAATCTTCAGCGGCGCTTCTAGCAAAAACGCCGCTAAAGACCAACACC
14475101 TTTAGCGGCGCTTCCACTAA
66 TTTAGCGGCGCTTCCACTAA
* * * * * * *
14475121 AGCGCCGTTAAAGGTCTTAGTCTTCAGCGGCGTTTGT-GCTAGAAGCGCCGCTAAAGATCAACAC
1 AGCGCCGCTAAAGGTCTTAATCTTCAGCGGCGCTTCTAGC-AAAAACGCCGCTAAAGACCAACAC
14475185 CTTTAGCGGCGC
65 CTTTAGCGGCGC
14475197 AATCATTAGC
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
84 2 0.03
85 61 0.97
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (85 bp):
AGCGCCGCTAAAGGTCTTAATCTTCAGCGGCGCTTCTAGCAAAAACGCCGCTAAAGACCAACACC
TTTAGCGGCGCTTCCACTAA
Found at i:14495152 original size:20 final size:19
Alignment explanation
Indices: 14495098--14495169 Score: 64
Period size: 20 Copynumber: 4.0 Consensus size: 19
14495088 AAGAAATCCT
*
14495098 AAAAATTAAATAATTTTT-
1 AAAAATTTAATAATTTTTA
*
14495116 -AAAA-TTAAT--TATTTA
1 AAAAATTTAATAATTTTTA
* *
14495131 AACATTTTAATATATTTTTA
1 AAAAATTTAATA-ATTTTTA
14495151 AAAAATTTAATAATTTTTA
1 AAAAATTTAATAATTTTTA
14495170 TAAATTCTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
14 4 0.10
16 6 0.15
17 9 0.22
19 7 0.17
20 15 0.37
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (19 bp):
AAAAATTTAATAATTTTTA
Found at i:14495166 original size:29 final size:29
Alignment explanation
Indices: 14495126--14495225 Score: 71
Period size: 29 Copynumber: 3.4 Consensus size: 29
14495116 AAAATTAATT
14495126 ATTTAA-ACATTTTAATATATTTTTAAAAA
1 ATTTAATA-ATTTTAATATATTTTTAAAAA
* * * *
14495155 ATTTAATAATTTTTATAAATTCTT--ATA
1 ATTTAATAATTTTAATATATTTTTAAAAA
* *
14495182 ATTATCAATAATTTTGCATAATTTTTTTAAAAA
1 ATT-T-AATAATTTT-AAT-ATATTTTTAAAAA
*
14495215 ATTTAGTAATT
1 ATTTAATAATT
14495226 AACTAAAAAA
Statistics
Matches: 54, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
27 5 0.09
28 1 0.02
29 28 0.52
30 3 0.06
31 11 0.20
32 1 0.02
33 5 0.09
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (29 bp):
ATTTAATAATTTTAATATATTTTTAAAAA
Found at i:14495367 original size:24 final size:24
Alignment explanation
Indices: 14495347--14495402 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
14495337 TAAAAATTAT
*
14495347 TTATTTTTA-TAATTTTTAAATAA
1 TTATTTTTAGGAATTTTTAAATAA
* *
14495370 TTATTTTTAGGAATTTTTTAGTAA
1 TTATTTTTAGGAATTTTTAAATAA
14495394 TTATTTTTA
1 TTATTTTTA
14495403 AAAAATGTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 9 0.31
24 20 0.69
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (24 bp):
TTATTTTTAGGAATTTTTAAATAA
Found at i:14502929 original size:14 final size:13
Alignment explanation
Indices: 14502912--14502953 Score: 57
Period size: 14 Copynumber: 3.1 Consensus size: 13
14502902 AATTTTATAT
*
14502912 TTTTAATCTTCAA
1 TTTTAATTTTCAA
14502925 GTTTTAATTTTCAA
1 -TTTTAATTTTCAA
14502939 TTTCTAATTTTCAA
1 TTT-TAATTTTCAA
14502953 T
1 T
14502954 CCTCTATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 3 0.12
14 23 0.88
ACGTcount: A:0.29, C:0.12, G:0.02, T:0.57
Consensus pattern (13 bp):
TTTTAATTTTCAA
Found at i:14509081 original size:23 final size:22
Alignment explanation
Indices: 14509053--14509101 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
14509043 CCACCAACCA
* *
14509053 AATTACAATAGAAGTTTATTGCC
1 AATTACAACAAAAGTTTATT-CC
*
14509076 AATTACAACAAAAGTTTGTTCC
1 AATTACAACAAAAGTTTATTCC
14509098 AATT
1 AATT
14509102 CTTGTAGCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35
Consensus pattern (22 bp):
AATTACAACAAAAGTTTATTCC
Found at i:14511692 original size:18 final size:18
Alignment explanation
Indices: 14511669--14511703 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
14511659 GAAGAAGAAA
14511669 ATTTCAAATGATGTTCAC
1 ATTTCAAATGATGTTCAC
14511687 ATTTCAAATGATGTTCA
1 ATTTCAAATGATGTTCA
14511704 AATTGATGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.40
Consensus pattern (18 bp):
ATTTCAAATGATGTTCAC
Found at i:14512178 original size:72 final size:72
Alignment explanation
Indices: 14512075--14512249 Score: 266
Period size: 72 Copynumber: 2.5 Consensus size: 72
14512065 TTAAACAACA
* * * *
14512075 ATGT-TAAACTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTC
1 ATGTATAATCTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTA
14512139 CTTATTT
66 CTTATTT
*
14512146 ATGTATAATCTAGTTTTATTAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTA
1 ATGTATAATCTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTA
14512211 CTTATTT
66 CTTATTT
*
14512218 ATACTA-AAT-TAGTTTTATCAATAGTTGTTTAT
1 AT-GTATAATCTAGTTTTATCAATAGTTGTTTAT
14512250 ATATGATTTT
Statistics
Matches: 95, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
71 26 0.27
72 67 0.71
73 2 0.02
ACGTcount: A:0.26, C:0.06, G:0.14, T:0.54
Consensus pattern (72 bp):
ATGTATAATCTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTA
CTTATTT
Found at i:14524070 original size:12 final size:12
Alignment explanation
Indices: 14524053--14524086 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
14524043 GGCCTGCTAT
14524053 TAAAATAA-ATAA
1 TAAAATAACA-AA
14524065 TAAAATAACAAA
1 TAAAATAACAAA
14524077 TAAAATAACA
1 TAAAATAACA
14524087 GTCCAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 20 0.95
13 1 0.05
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.21
Consensus pattern (12 bp):
TAAAATAACAAA
Found at i:14525168 original size:19 final size:19
Alignment explanation
Indices: 14525144--14525184 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
14525134 TTATTAATAA
*
14525144 ATTTATTGTTACTATTATT
1 ATTTATTATTACTATTATT
**
14525163 ATTTATTATTGGTATTATT
1 ATTTATTATTACTATTATT
14525182 ATT
1 ATT
14525185 ACACTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (19 bp):
ATTTATTATTACTATTATT
Found at i:14530313 original size:36 final size:36
Alignment explanation
Indices: 14530266--14530337 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
14530256 ATGAGTTCAG
*
14530266 ATCAAAATCAAAATCAAAAATAAAAAATAAGAAAAA
1 ATCAAAATCAAAATCAAAAACAAAAAATAAGAAAAA
*
14530302 ATCAAAATCAAAATCGAAAACAAAAAATAAGAAAAA
1 ATCAAAATCAAAATCAAAAACAAAAAATAAGAAAAA
14530338 GAAAAATCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.74, C:0.10, G:0.04, T:0.12
Consensus pattern (36 bp):
ATCAAAATCAAAATCAAAAACAAAAAATAAGAAAAA
Found at i:14530326 original size:42 final size:41
Alignment explanation
Indices: 14530266--14530347 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 41
14530256 ATGAGTTCAG
14530266 ATCAAAATCAAAATC-AAAAATAAAAAATAAGAAAAAATCAAA
1 ATCAAAATCAAAATCAAAAAATAAAAAA-AAG-AAAAATCAAA
*
14530308 ATCAAAATCGAAAA-CAAAAAATAAGAAAAAGAAAAATCAA
1 ATCAAAATC-AAAATCAAAAAATAAAAAAAAGAAAAATCAA
14530348 TCAAAGTGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
41 9 0.24
42 13 0.35
43 15 0.41
ACGTcount: A:0.73, C:0.10, G:0.05, T:0.12
Consensus pattern (41 bp):
ATCAAAATCAAAATCAAAAAATAAAAAAAAGAAAAATCAAA
Found at i:14532615 original size:19 final size:19
Alignment explanation
Indices: 14532591--14532631 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
14532581 TTATTAATAA
*
14532591 ATTTATTGTTACTATTATT
1 ATTTATTATTACTATTATT
**
14532610 ATTTATTATTGGTATTATT
1 ATTTATTATTACTATTATT
14532629 ATT
1 ATT
14532632 ACACTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (19 bp):
ATTTATTATTACTATTATT
Found at i:14534773 original size:15 final size:15
Alignment explanation
Indices: 14534755--14534784 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14534745 TCCCCAAATT
14534755 AAAAAAATTTAAAGA
1 AAAAAAATTTAAAGA
14534770 AAAAAAATTTAAAGA
1 AAAAAAATTTAAAGA
14534785 GGCCTTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (15 bp):
AAAAAAATTTAAAGA
Found at i:14535066 original size:34 final size:31
Alignment explanation
Indices: 14535013--14535080 Score: 91
Period size: 34 Copynumber: 2.1 Consensus size: 31
14535003 CAATTGAATA
*
14535013 ACAGTTCAGTTCAGTTGGGCCTTTTCCCATT
1 ACAGTTCAGTTCAGTTGGGCCTTCTCCCATT
*
14535044 ACAGTATCAGTATCAGTGTGGGCCTTCTCTCATT
1 ACAGT-TCAGT-TCAGT-TGGGCCTTCTCCCATT
14535078 ACA
1 ACA
14535081 ATGATAGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
31 5 0.16
32 5 0.16
33 5 0.16
34 17 0.53
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (31 bp):
ACAGTTCAGTTCAGTTGGGCCTTCTCCCATT
Found at i:14535399 original size:27 final size:26
Alignment explanation
Indices: 14535365--14535431 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
14535355 CATAAAGCAT
14535365 ACAGTCATTTTATAACATAGGGGCACA
1 ACAGTCATTTTATAACATA-GGGCACA
** * *
14535392 ACAGTCATTTTACCACGTAGGGCATA
1 ACAGTCATTTTATAACATAGGGCACA
*
14535418 ACAATCATTTTATA
1 ACAGTCATTTTATA
14535432 TCAGTTTGAG
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
26 17 0.52
27 16 0.48
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (26 bp):
ACAGTCATTTTATAACATAGGGCACA
Found at i:14540002 original size:104 final size:104
Alignment explanation
Indices: 14539814--14540026 Score: 331
Period size: 104 Copynumber: 2.0 Consensus size: 104
14539804 NNNNNNNNNN
* *
14539814 CCCCTCGGGGGAATCAGAACATAGCAACCCCCTTTTCATTTCAAAGATATGGTGGATATCGCACT
1 CCCCTCGGGGGAATCAGAACATAGCAACCCCCTTTACATTTCAAAGATATGGTGGATATCGCACA
**
14539879 TAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAA
66 TAGCACCACCAATGAAATCGGGGAATCAGCACACAGCAA
* *
14539918 CCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTGGGTCA-CGCA
1 CCCCTCGGGGGAATCAGAACATAGCAACCCCCTTT-ACATTTCAAAGATATGGTGGAT-ATCGCA
*
14539982 CATAGCACCACCCATG-AATCGGGGAATCAGCACACAGCAA
64 CATAGCACCACCAATGAAATCGGGGAATCAGCACACAGCAA
14540022 CCCCT
1 CCCCT
14540027 TTTATATACA
Statistics
Matches: 100, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
104 61 0.61
105 38 0.38
106 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.20, T:0.19
Consensus pattern (104 bp):
CCCCTCGGGGGAATCAGAACATAGCAACCCCCTTTACATTTCAAAGATATGGTGGATATCGCACA
TAGCACCACCAATGAAATCGGGGAATCAGCACACAGCAA
Found at i:14540388 original size:29 final size:29
Alignment explanation
Indices: 14540355--14540418 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
14540345 TAATCCACCA
14540355 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
14540384 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
14540414 CCCAA
1 CCCAA
14540419 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:14540392 original size:30 final size:30
Alignment explanation
Indices: 14540362--14540418 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
14540352 CCACCCAACT
14540362 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
14540391 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
14540419 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:14545407 original size:307 final size:307
Alignment explanation
Indices: 14544853--14545470 Score: 1173
Period size: 307 Copynumber: 2.0 Consensus size: 307
14544843 GATTCAGATG
14544853 CAGATATTTCTAACCCCCATCTTCTACACACCATCTTCGGCCATCTCAACACCTTTAAGGGCATT
1 CAGATATTTCTAACCCCCATCTTCTACACACCATCTTCGGCCATCTCAACACCTTTAAGGGCATT
* *
14544918 CAATGCTCAACCAACCTTACATACCATAAATTGTCTATCTGACACGTTTATAGAAATACAACTTA
66 CAATGCTCAACCAACCTTACATACCATAAATTGTCTATCTGACACGTTTACAGAAACACAACTTA
* *
14544983 GTTGCTGGATTGTAAAGTGACGAAGCGCCATAATTAGAACTATACACATGGTGGCTTAACCACTA
131 GTTGATGGATTGTAAAGTGACGAAGCGCCAGAATTAGAACTATACACATGGTGGCTTAACCACTA
*
14545048 ATTCAGAGTAGATTACTTCTTTCTTCATAACATCTCAACCCATGCAAATGCATAGTACAATTATC
196 ATTCAGAGTAGATTACTTCTTTCTTCATAACATCCCAACCCATGCAAATGCATAGTACAATTATC
*
14545113 TACAATACACTTACAATTATGATATTCATACGTCCATTACAGAGTAT
261 CACAATACACTTACAATTATGATATTCATACGTCCATTACAGAGTAT
14545160 CAGATATTTCTAACCCCCATCTTCTACACACCATCTTCGGCCATCTCAACACCTTTAAGGGCATT
1 CAGATATTTCTAACCCCCATCTTCTACACACCATCTTCGGCCATCTCAACACCTTTAAGGGCATT
14545225 CAATGCTCAACCAACCTTACATACCATAAATTGTCTATCTGACACGTTTACAGAAACACAACTTA
66 CAATGCTCAACCAACCTTACATACCATAAATTGTCTATCTGACACGTTTACAGAAACACAACTTA
14545290 GTTGATGGATTGTAAAGTGACGAAGCGCCAGAATTAGAACTATACACATGGTGGCTTAACCACTA
131 GTTGATGGATTGTAAAGTGACGAAGCGCCAGAATTAGAACTATACACATGGTGGCTTAACCACTA
*
14545355 ATTCAGAGTAGATTACTTCTTTCTTCATAACATCCCAATCCATGCAAATGCATAGTACAATTATC
196 ATTCAGAGTAGATTACTTCTTTCTTCATAACATCCCAACCCATGCAAATGCATAGTACAATTATC
14545420 CACAATACACTTACAATTATGATATTCATACGTCCATTACAGAGTAT
261 CACAATACACTTACAATTATGATATTCATACGTCCATTACAGAGTAT
14545467 CAGA
1 CAGA
14545471 GAGTTCACGT
Statistics
Matches: 304, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
307 304 1.00
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (307 bp):
CAGATATTTCTAACCCCCATCTTCTACACACCATCTTCGGCCATCTCAACACCTTTAAGGGCATT
CAATGCTCAACCAACCTTACATACCATAAATTGTCTATCTGACACGTTTACAGAAACACAACTTA
GTTGATGGATTGTAAAGTGACGAAGCGCCAGAATTAGAACTATACACATGGTGGCTTAACCACTA
ATTCAGAGTAGATTACTTCTTTCTTCATAACATCCCAACCCATGCAAATGCATAGTACAATTATC
CACAATACACTTACAATTATGATATTCATACGTCCATTACAGAGTAT
Found at i:14546398 original size:18 final size:20
Alignment explanation
Indices: 14546343--14546415 Score: 71
Period size: 20 Copynumber: 3.7 Consensus size: 20
14546333 AGAAATCGAG
* *
14546343 GAAGTAAAAAGAAAGAAGGAA
1 GAAG-AAAAAGAAAAAAAGAA
*
14546364 -AAGAATAAAGGAAAAAAG-A
1 GAAGAA-AAAGAAAAAAAGAA
*
14546383 GAA-AAAAATAAAAAAAGAA
1 GAAGAAAAAGAAAAAAAGAA
14546402 GAAGAAAAAGAAAA
1 GAAGAAAAAGAAAA
14546416 TATACAGACG
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
18 10 0.24
19 9 0.21
20 23 0.55
ACGTcount: A:0.75, C:0.00, G:0.21, T:0.04
Consensus pattern (20 bp):
GAAGAAAAAGAAAAAAAGAA
Found at i:14546406 original size:6 final size:6
Alignment explanation
Indices: 14546348--14546415 Score: 50
Period size: 6 Copynumber: 10.7 Consensus size: 6
14546338 TCGAGGAAGT
*
14546348 AAAAAG AAAGAAG GAAAAG AATAAAGG AAAAAAG AGAAAA- AAATAA-
1 AAAAAG AAA-AAG AAAAAG AA-AAA-G -AAAAAG A-AAAAG AAA-AAG
*
14546394 AAAAAG AAGAAG AAAAAG AAAA
1 AAAAAG AAAAAG AAAAAG AAAA
14546416 TATACAGACG
Statistics
Matches: 51, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
5 4 0.08
6 28 0.55
7 13 0.25
8 4 0.08
9 2 0.04
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (6 bp):
AAAAAG
Found at i:14546407 original size:22 final size:22
Alignment explanation
Indices: 14546348--14546410 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 22
14546338 TCGAGGAAGT
*
14546348 AAAAAGAAAGAAGGAAAAGAATAA
1 AAAAAG-AAGAA-GAAAAAAATAA
14546372 AGGAAAA-AAG-AGAAAAAAATAA
1 A--AAAAGAAGAAGAAAAAAATAA
14546394 AAAAAGAAGAAGAAAAA
1 AAAAAGAAGAAGAAAAA
14546411 GAAAATATAC
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
20 4 0.12
21 3 0.09
22 18 0.53
23 1 0.03
24 4 0.12
26 4 0.12
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (22 bp):
AAAAAGAAGAAGAAAAAAATAA
Found at i:14546938 original size:32 final size:32
Alignment explanation
Indices: 14546901--14546966 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
14546891 TTATAATAAG
14546901 TTAGTTTTGAATGGAATAGAATATAATTAAAT
1 TTAGTTTTGAATGGAATAGAATATAATTAAAT
*
14546933 TTAGTTTTGTATGGAATAGAATATAATTAAAT
1 TTAGTTTTGAATGGAATAGAATATAATTAAAT
14546965 TT
1 TT
14546967 TATATTTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (32 bp):
TTAGTTTTGAATGGAATAGAATATAATTAAAT
Found at i:14546960 original size:27 final size:30
Alignment explanation
Indices: 14546892--14546959 Score: 100
Period size: 32 Copynumber: 2.2 Consensus size: 30
14546882 GAGGAATGGT
*
14546892 TATAATAAGTTAGTTTTGAATGGAATAGAA
1 TATAATAATTTAGTTTTGAATGGAATAGAA
*
14546922 TATAATTAAATTTAGTTTTGTATGGAATAGAA
1 TATAA-T-AATTTAGTTTTGAATGGAATAGAA
14546954 TATAAT
1 TATAAT
14546960 TAAATTTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
30 5 0.15
31 2 0.06
32 27 0.79
ACGTcount: A:0.43, C:0.00, G:0.16, T:0.41
Consensus pattern (30 bp):
TATAATAATTTAGTTTTGAATGGAATAGAA
Found at i:14548709 original size:49 final size:49
Alignment explanation
Indices: 14548637--14548734 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
14548627 GCCTCTACAT
* *
14548637 CCATAACTCTGGGTTGGGAAAGTGGTGATGAAAGTAAGAGATAACTGAG
1 CCATAACTCTGGGCTGGGAAAGTGGTGATGAAAGTAAAAGATAACTGAG
14548686 CCATAACTCTGGGCTGGGAAAGTGGTGATGAAAGTAAAAGATAACTGAG
1 CCATAACTCTGGGCTGGGAAAGTGGTGATGAAAGTAAAAGATAACTGAG
14548735 ACCTGTAACA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.36, C:0.11, G:0.32, T:0.21
Consensus pattern (49 bp):
CCATAACTCTGGGCTGGGAAAGTGGTGATGAAAGTAAAAGATAACTGAG
Found at i:14556072 original size:2 final size:2
Alignment explanation
Indices: 14556065--14556099 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
14556055 ACAAAATCAG
14556065 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14556100 GTGTGTGTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14556104 original size:2 final size:2
Alignment explanation
Indices: 14556099--14556129 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
14556089 TATATATATA
14556099 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
14556130 ATGTATGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:14556730 original size:2 final size:2
Alignment explanation
Indices: 14556687--14556720 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
14556677 TTAAGAAGTA
14556687 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14556721 CTGAATATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14559807 original size:18 final size:19
Alignment explanation
Indices: 14559784--14559825 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
14559774 GGTTTTCTCA
14559784 AAATGGAAATGGAA-ATG-T
1 AAATGGAAAT-GAAGATGAT
14559802 AAATGGAAATGAAGATGAT
1 AAATGGAAATGAAGATGAT
14559821 AAATG
1 AAATG
14559826 ATTCATTTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 3 0.14
18 13 0.59
19 6 0.27
ACGTcount: A:0.52, C:0.00, G:0.26, T:0.21
Consensus pattern (19 bp):
AAATGGAAATGAAGATGAT
Found at i:14569766 original size:24 final size:24
Alignment explanation
Indices: 14569734--14569784 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
14569724 GGGGCCAAAG
14569734 TAAGAAATTCAGAGTTGAAATGAT
1 TAAGAAATTCAGAGTTGAAATGAT
14569758 TAAGAAATTCAGAGTTGAAATGAT
1 TAAGAAATTCAGAGTTGAAATGAT
14569782 TAA
1 TAA
14569785 ATTGAATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.47, C:0.04, G:0.20, T:0.29
Consensus pattern (24 bp):
TAAGAAATTCAGAGTTGAAATGAT
Found at i:14570590 original size:13 final size:13
Alignment explanation
Indices: 14570572--14570601 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
14570562 TTATGAGTAT
14570572 GTGAGTAAATGCA
1 GTGAGTAAATGCA
14570585 GTGAGTAAATGCA
1 GTGAGTAAATGCA
14570598 GTGA
1 GTGA
14570602 AATATGTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.07, G:0.33, T:0.23
Consensus pattern (13 bp):
GTGAGTAAATGCA
Done.