Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_126 ID=scaffold_126-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11968
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:9558 original size:33 final size:33

Alignment explanation


    Indices: 9498--9563  Score: 80
    Period size: 36  Copynumber: 1.9  Consensus size: 33

       9488 ATGATTAAAC

                                                
       9498 AATTCAATAATATAAAAAGTACAAAATATGAAATTT
          1 AATTCAATAATATAAAAAGT--AAAATAT-AAATTT

                *           *              
       9534 AATTTAATAATATAAATAGT-AAATATAAAT
          1 AATTCAATAATATAAAAAGTAAAATATAAAT

       9564 AAAATTATTA


Statistics
Matches: 28,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  32    4  0.14
  33    6  0.21
  36   18  0.64

ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33


Consensus pattern (33 bp):   
AATTCAATAATATAAAAAGTAAAATATAAATTT
Done.