Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 ID=Chr13-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58321163
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 747533 characters in sequence are not A, C, G, or T
File 105 of 199
Found at i:32027516 original size:19 final size:21
Alignment explanation
Indices: 32027492--32027530 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
32027482 ACTGTTTTCT
*
32027492 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
32027511 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
32027531 TTAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:32028182 original size:2 final size:2
Alignment explanation
Indices: 32028175--32028214 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
32028165 CATTATGCAT
*
32028175 TA TA TA TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32028215 AGTTTTATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:32034513 original size:88 final size:88
Alignment explanation
Indices: 32034357--32034727 Score: 508
Period size: 88 Copynumber: 4.2 Consensus size: 88
32034347 ATCAGTGAAG
* * * * * *
32034357 ATAACAGATCTTGCCTTCCTGTACTGGCAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCTCGG
1 ATAACAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
*
32034422 GGTTGCAGCGGAGCAGGTTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* * * * * * *
32034445 ATAGCATATCTTGCTTTCCTACACCGACAGCGAAGTAGATCGAAGTCACCAGTCTTGCCTCCCTG
1 ATAACAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
**
32034510 GGTTGCAGCGGAATAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* * * * * *
32034533 ATAACAGATCTTACCTTCCTGCACTGACAGTGAAGCAGATTGAAGTCACCAGCCTTGCCTCTCTG
1 ATAACAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
32034598 GGTTGCAGCGGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
*
32034621 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
1 ATAACAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
* *
32034686 GGTTGTAGCAGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
*
32034709 GTAACAGATCTTGCCTTCC
1 ATAACAGATCTTGCCTTCC
32034728 NNNNNNNNNN
Statistics
Matches: 243, Mismatches: 40, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
88 243 1.00
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (88 bp):
ATAACAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
GGTTGCAGCGGAGCAGGCTAAAA
Found at i:32034651 original size:176 final size:176
Alignment explanation
Indices: 32034357--32034727 Score: 562
Period size: 176 Copynumber: 2.1 Consensus size: 176
32034347 ATCAGTGAAG
* *
32034357 ATAACAGATCTTGCCTTCCTGTACTGGCAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCTCGG
1 ATAACAGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCTCGG
* * * *
32034422 GGTTGCAGCGGAGCAGGTTAAAAATAGCATATCTTGCTTTCCTACACCGACAGCGAAGTAGATCG
66 GGTTGCAGCGGAGCAGGCTAAAAATAGCAGATCTTGCCTTCCTACACCGACAGCGAAGCAGATCG
* * * *
32034487 AAGTCACCAGTCTTGCCTCCCTGGGTTGCAGCGGAATAGGCTAAAA
131 AAGACACCAGCCTTGCCTCCCTGGGTTGCAGCAGAACAGGCTAAAA
* * ** * *
32034533 ATAACAGATCTTACCTTCCTGCACTGACAGTGAAGCAGATTGAAGTCACCAGCCTTGCCTCTCTG
1 ATAACAGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCTCGG
*
32034598 GGTTGCAGCGGAGCAGGCTAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCG
66 GGTTGCAGCGGAGCAGGCTAAAAATAGCAGATCTTGCCTTCCTACACCGACAGCGAAGCAGATCG
* *
32034663 AAGACACCAGCCTTGCCTCCCTGGGTTGTAGCAGAGCAGGCTAAAA
131 AAGACACCAGCCTTGCCTCCCTGGGTTGCAGCAGAACAGGCTAAAA
*
32034709 GTAACAGATCTTGCCTTCC
1 ATAACAGATCTTGCCTTCC
32034728 NNNNNNNNNN
Statistics
Matches: 174, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
176 174 1.00
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (176 bp):
ATAACAGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCTCGG
GGTTGCAGCGGAGCAGGCTAAAAATAGCAGATCTTGCCTTCCTACACCGACAGCGAAGCAGATCG
AAGACACCAGCCTTGCCTCCCTGGGTTGCAGCAGAACAGGCTAAAA
Found at i:32036326 original size:57 final size:57
Alignment explanation
Indices: 32036233--32036354 Score: 165
Period size: 57 Copynumber: 2.1 Consensus size: 57
32036223 CCGACAGCGA
*
32036233 AGCAAATCGAAGACACTAGCCTTGCCTCCCTCGGTTGCAGCAGAGCAGGCTAAAAAT
1 AGCAGATCGAAGACACTAGCCTTGCCTCCCTCGGTTGCAGCAGAGCAGGCTAAAAAT
* * * ** *
32036290 AGCAGATCGAAGTCA-TCAGCCTTGCCTCCTTGGGTTGCAGTGGAGCAGGCTGAAAAT
1 AGCAGATCGAAGACACT-AGCCTTGCCTCCCTCGGTTGCAGCAGAGCAGGCTAAAAAT
32036347 AGCAGATC
1 AGCAGATC
32036355 TTACCTTCCT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
56 1 0.02
57 56 0.98
ACGTcount: A:0.29, C:0.25, G:0.26, T:0.20
Consensus pattern (57 bp):
AGCAGATCGAAGACACTAGCCTTGCCTCCCTCGGTTGCAGCAGAGCAGGCTAAAAAT
Found at i:32036429 original size:145 final size:144
Alignment explanation
Indices: 32036167--32036438 Score: 427
Period size: 145 Copynumber: 1.9 Consensus size: 144
32036157 NNNNNNNNNN
* *
32036167 TTGCCTCCCTGGGTTGCAGCGGAGCAGGCTAAAAATAGCAGACCTTCCTTCCTGCACCGACAGCG
1 TTGCCTCCCTGGGTTGCAGCGGAGCAGGCTAAAAATAGCAGACCTTCCTTCCTGCACCAACAACG
*
32036232 AAGCAAATCGAAGACACTAGCCTTGCCTCCCTCGGTTGCAGCAGAGCAGGCTAAAAATAGCAGAT
66 AAGCAAATCGAAGACACCAGCCTTGCCTCCCTCGGTTGCAGCAGAGCAGGCTAAAAATAGCAGAT
32036297 CGAAGTCATCAGCC
131 CGAAGTCATCAGCC
* * * *
32036311 TTGCCTCCTTGGGTTGCAGTGGAGCAGGCTGAAAATAGCAGATCTTACCTTCCTGCACCAACAAC
1 TTGCCTCCCTGGGTTGCAGCGGAGCAGGCTAAAAATAGCAGACCTT-CCTTCCTGCACCAACAAC
* * * **
32036376 GAAGCAGATCGAAGTCACCAGCCTTGCCTCCCTGGGTTGCAGTGGAGCAGGCTAAAAATAGCA
65 GAAGCAAATCGAAGACACCAGCCTTGCCTCCCTCGGTTGCAGCAGAGCAGGCTAAAAATAGCA
32036439 AATCTTACCT
Statistics
Matches: 115, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
144 42 0.37
145 73 0.63
ACGTcount: A:0.27, C:0.28, G:0.25, T:0.19
Consensus pattern (144 bp):
TTGCCTCCCTGGGTTGCAGCGGAGCAGGCTAAAAATAGCAGACCTTCCTTCCTGCACCAACAACG
AAGCAAATCGAAGACACCAGCCTTGCCTCCCTCGGTTGCAGCAGAGCAGGCTAAAAATAGCAGAT
CGAAGTCATCAGCC
Found at i:32036444 original size:88 final size:88
Alignment explanation
Indices: 32036290--32036560 Score: 418
Period size: 88 Copynumber: 3.1 Consensus size: 88
32036280 GGCTAAAAAT
* * *
32036290 AGCAGATCGAAGTCATCAGCCTTGCCTCCTTGGGTTGCAGTGGAGCAGGCTGAAAATAGCAGATC
1 AGCAGATCGAAGTCACCAGCCTTGCCTCCCTGGGTTGCAGTGGAGCAGGCTAAAAATAGCAGATC
*
32036355 TTACCTTCCTGCACCAACAACGA
66 TTACCTTCCTGCACCAACAGCGA
*
32036378 AGCAGATCGAAGTCACCAGCCTTGCCTCCCTGGGTTGCAGTGGAGCAGGCTAAAAATAGCAAATC
1 AGCAGATCGAAGTCACCAGCCTTGCCTCCCTGGGTTGCAGTGGAGCAGGCTAAAAATAGCAGATC
*
32036443 TTACCTTCCTGCACCGACAGCGA
66 TTACCTTCCTGCACCAACAGCGA
* * ** *
32036466 AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGATTAAAAATAGTAGATC
1 AGCAGATCGAAGTCACCAGCCTTGCCTCCCTGGGTTGCAGTGGAGCAGGCTAAAAATAGCAGATC
*
32036531 TTGCCTTCCTGCA-CAGACAGCGA
66 TTACCTTCCTGCACCA-ACAGCGA
32036554 AGCAGAT
1 AGCAGAT
32036561 TGATGACCCC
Statistics
Matches: 168, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
87 1 0.01
88 167 0.99
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (88 bp):
AGCAGATCGAAGTCACCAGCCTTGCCTCCCTGGGTTGCAGTGGAGCAGGCTAAAAATAGCAGATC
TTACCTTCCTGCACCAACAGCGA
Found at i:32036640 original size:44 final size:44
Alignment explanation
Indices: 32036574--32036949 Score: 448
Period size: 44 Copynumber: 8.7 Consensus size: 44
32036564 TGACCCCAAC
* *
32036574 CCTATCTCCCT-GATCAGTAGTGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGA-CAGCAGTGGAATAGGTTGAAGATTGTGAAT
*
32036618 CCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAAT
* *
32036662 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
1 CCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAAT
* *
32036706 TCTATCTCCCTAGG-CAGCAGTGGAATAGATT-AA-A----GAAT
1 CCTATCTCCCT-GGACAGCAGTGGAATAGGTTGAAGATTGTGAAT
* *
32036744 CCTATCTCCCTGGATAGCAGTGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * *
32036788 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAATATTGAGAAT
1 CCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAAT
* *** * *
32036832 TCTATCTCCCTGGGTTGCAGTGGAATAGATTGAAGATTGT-AGGT
1 CCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGA-AT
* * * *
32036876 CTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATCGTGAAC
1 CCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAAT
32036920 CCTATCTCCCT-GAGCAGCAGTGGAATAGGT
1 CCTATCTCCCTGGA-CAGCAGTGGAATAGGT
32036950 AGAAAATAGC
Statistics
Matches: 287, Mismatches: 33, Indels: 24
0.83 0.10 0.07
Matches are distributed among these distances:
37 2 0.01
38 29 0.10
39 2 0.01
40 1 0.00
42 1 0.00
43 4 0.01
44 243 0.85
45 5 0.02
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (44 bp):
CCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAAT
Found at i:32036772 original size:126 final size:129
Alignment explanation
Indices: 32036613--32036949 Score: 504
Period size: 126 Copynumber: 2.6 Consensus size: 129
32036603 TTAAAGATTG
*
32036613 TGAATCCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCA
1 TGAATCCTATCTCCCTGGATAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCA
32036678 GCAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCTAGGCAGCAGTGGAATAGATT-AA-A
66 GCAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCTAGGCAGCAGTGGAATAGATTGAAGA
32036740 -GAATCCTATCTCCCTGGATAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCA
1 TGAATCCTATCTCCCTGGATAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCA
* * **
32036804 GCAGTGGAATAGGTTGAATATTGAGAATTCTATCTCCCTGGGTTGCAGTGGAATAGATTGAAGA
66 GCAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCTAGGCAGCAGTGGAATAGATTGAAGA
* * * * *
32036868 TTGTAGGTCTTATCTCCCTGG-TCAGCAGTGGAATAGGTTGAAGATCGTGAACCCTATCTCCCTG
1 -TG-A-ATCCTATCTCCCTGGAT-AGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTG
32036932 AG-CAGCAGTGGAATAGGT
62 -GTCAGCAGTGGAATAGGT
32036950 AGAAAATAGC
Statistics
Matches: 192, Mismatches: 10, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
126 118 0.61
127 2 0.01
128 1 0.01
130 1 0.01
131 2 0.01
132 67 0.35
133 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (129 bp):
TGAATCCTATCTCCCTGGATAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCA
GCAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCTAGGCAGCAGTGGAATAGATTGAAGA
Found at i:32036856 original size:170 final size:170
Alignment explanation
Indices: 32036574--32036949 Score: 510
Period size: 170 Copynumber: 2.2 Consensus size: 170
32036564 TGACCCCAAC
*
32036574 CCTATCTCCCTGATCAGTAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGT
1 CCTATCTCCCTGATCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGT
* *
32036639 GGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG-AG
66 GGAATAGGTTAAAGATTGAGAATCCTATCTCCCTGGTCAGCAGTGGAATAGATTGAAGATTGTAG
*
32036703 AAT-TCTATCTCCCTAGG-CAGCAGTGGAATAGATTAAAGAAT
131 -GTCT-TATCTCCCT-GGTCAGCAGTGGAATAGATTAAAGAAT
*
32036744 CCTATCTCCCTGGAT-AGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAG
1 CCTATCTCCCT-GATCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAG
* * * *
32036808 TGGAATAGGTTGAATATTGAGAATTCTATCTCCCTGGGT-TGCAGTGGAATAGATTGAAGATTGT
65 TGGAATAGGTTAAAGATTGAGAATCCTATCTCCCT-GGTCAGCAGTGGAATAGATTGAAGATTGT
* *
32036872 AGGTCTTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATCGTGAAC
129 AGGTCTTATCTCCCTGGTCAGCAGTGGAATAGATT-AA-A----GAAT
*
32036920 CCTATCTCCCTGAGCAGCAGTGGAATAGGT
1 CCTATCTCCCTGATCAGCAGTGGAATAGGT
32036950 AGAAAATAGC
Statistics
Matches: 182, Mismatches: 12, Indels: 18
0.86 0.06 0.08
Matches are distributed among these distances:
169 2 0.01
170 137 0.75
171 11 0.06
172 1 0.01
175 2 0.01
176 29 0.16
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (170 bp):
CCTATCTCCCTGATCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGT
GGAATAGGTTAAAGATTGAGAATCCTATCTCCCTGGTCAGCAGTGGAATAGATTGAAGATTGTAG
GTCTTATCTCCCTGGTCAGCAGTGGAATAGATTAAAGAAT
Found at i:32037771 original size:19 final size:19
Alignment explanation
Indices: 32037747--32037840 Score: 152
Period size: 19 Copynumber: 4.8 Consensus size: 19
32037737 AATCTTCGAG
32037747 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
32037766 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
32037785 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
32037804 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
**
32037825 GATATATAATCTTAGA
1 GATATGCAATCTTAGA
32037841 AGATATGATT
Statistics
Matches: 71, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
19 52 0.73
21 19 0.27
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:32037822 original size:40 final size:38
Alignment explanation
Indices: 32037747--32037847 Score: 152
Period size: 40 Copynumber: 2.7 Consensus size: 38
32037737 AATCTTCGAG
32037747 GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
32037785 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATG--ATATGCAATCTTAGATAT
**
32037825 GATATATAATCTTAGA-A-GATATG
1 GATATGCAATCTTAGATATGATATG
32037848 ATTTTGTAAT
Statistics
Matches: 59, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
36 5 0.08
38 21 0.36
39 1 0.02
40 32 0.54
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.37
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGCAATCTTAGATAT
Found at i:32037873 original size:22 final size:23
Alignment explanation
Indices: 32037831--32037873 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
32037821 ATATGATATA
*
32037831 TAATCTTAGAAGATATGATTTTG
1 TAATCTTAGAAGATATAATTTTG
*
32037854 TAATCTTAG-AGATTTAATTT
1 TAATCTTAGAAGATATAATTT
32037874 GTAGATACCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.35, C:0.05, G:0.14, T:0.47
Consensus pattern (23 bp):
TAATCTTAGAAGATATAATTTTG
Found at i:32038062 original size:19 final size:21
Alignment explanation
Indices: 32038038--32038076 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
32038028 TACTGTTTTC
*
32038038 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
32038057 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
32038077 TTAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:32038293 original size:3 final size:3
Alignment explanation
Indices: 32038281--32038324 Score: 65
Period size: 3 Copynumber: 15.0 Consensus size: 3
32038271 GTTTTTAGTC
32038281 TAT T-T TAT TAT TAT TAT TAT TAT TA- TAT TAT ATAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
32038325 ACCTACATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
2 4 0.11
3 31 0.82
4 3 0.08
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:32042724 original size:2 final size:2
Alignment explanation
Indices: 32042717--32042748 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
32042707 TGTGTTTTGA
32042717 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32042749 TATTTTCAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32045607 original size:23 final size:23
Alignment explanation
Indices: 32045564--32045607 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
32045554 TACCAATTAG
* *
32045564 AAGAAGATCTAAGGGAGCACTCA
1 AAGAAGATCTAAGAGAACACTCA
32045587 AAGAAGAT-TGAAGAGAACACT
1 AAGAAGATCT-AAGAGAACACT
32045608 TGAAGAGCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 1 0.06
23 17 0.94
ACGTcount: A:0.48, C:0.14, G:0.25, T:0.14
Consensus pattern (23 bp):
AAGAAGATCTAAGAGAACACTCA
Found at i:32048795 original size:23 final size:23
Alignment explanation
Indices: 32048767--32048814 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
32048757 ACCCGGGCCC
*
32048767 AAACCCACCTA-AACCTAAACCCA
1 AAACCCA-CTACAAACTAAACCCA
*
32048790 AAACCCATTACAAACTAAACCCA
1 AAACCCACTACAAACTAAACCCA
32048813 AA
1 AA
32048815 TAAGCCTAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 2 0.09
23 20 0.91
ACGTcount: A:0.52, C:0.38, G:0.00, T:0.10
Consensus pattern (23 bp):
AAACCCACTACAAACTAAACCCA
Found at i:32049968 original size:3 final size:3
Alignment explanation
Indices: 32049953--32050032 Score: 63
Period size: 3 Copynumber: 26.3 Consensus size: 3
32049943 ATCATTTTGT
* * *
32049953 TTA TTA TTT TTA TTA TTTA TTA TTA TTA TCT- TTA CTA TTA CTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
* * * * *
32049999 GTA TTA TTA CTA ATA TTA TTA TTA CTA TCA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
32050033 ATTTACACTT
Statistics
Matches: 59, Mismatches: 15, Indels: 6
0.74 0.19 0.08
Matches are distributed among these distances:
2 1 0.02
3 54 0.92
4 4 0.07
ACGTcount: A:0.31, C:0.07, G:0.01, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:32055001 original size:39 final size:39
Alignment explanation
Indices: 32054947--32055029 Score: 148
Period size: 39 Copynumber: 2.1 Consensus size: 39
32054937 ATCGTTGTAA
*
32054947 CTTAGTCTAGCTAACCTAGGGACTAACTTGTTAAATTGT
1 CTTAGTCTAGCTAACCTAGGGACTAACTTGCTAAATTGT
*
32054986 CTTAGTCTAGCTAACCTAGGGACTAATTTGCTAAATTGT
1 CTTAGTCTAGCTAACCTAGGGACTAACTTGCTAAATTGT
32055025 CTTAG
1 CTTAG
32055030 ATTTTAATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (39 bp):
CTTAGTCTAGCTAACCTAGGGACTAACTTGCTAAATTGT
Found at i:32057081 original size:21 final size:20
Alignment explanation
Indices: 32057039--32057077 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32057029 AAAGCTTTGA
* * *
32057039 TTTTTAAGAAAAATAGTAAT
1 TTTTTAAAAAAAAGAGAAAT
32057059 TTTTTAAAAAAAAGAGAAA
1 TTTTTAAAAAAAAGAGAAA
32057078 ATTTAGATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.10, T:0.33
Consensus pattern (20 bp):
TTTTTAAAAAAAAGAGAAAT
Found at i:32057238 original size:145 final size:148
Alignment explanation
Indices: 32056911--32057305 Score: 529
Period size: 145 Copynumber: 2.7 Consensus size: 148
32056901 AAATTTTTTA
* *
32056911 TTTT-AAAAAAACACGAAAGTTTAGATTTTTAAAAATAAAAACT-TGTTTTTTAGTCATTTTAAA
1 TTTTAAAAAAAAAAAGAAAGTTTAGATTTTTAAAAATAAAAACTATG-TTTTTAGTCATTTTAAA
* **
32056974 GGAAAAGATTAAATTTTTAAAACGAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAGCTTTGA
65 GGAAAAGTTTAAATTTTTAAAAC-AAGTTTTGATCTTTTTCAACTATTTCGAAATAAAAATTTGA
32057039 TTTTTAAGAAAAATAGTAAT
129 TTTTTAAGAAAAATAGTAAT
* * *
32057059 TTTTTAAAAAAAAGAGAAAATTTAGATTTTTAAAAATAAAAA-TATGTTTTTAGTCATTTTAAAG
1 TTTTAAAAAAAAAAAGAAAGTTTAGATTTTTAAAAATAAAAACTATGTTTTTAGTCATTTTAAAG
*** *
32057123 GAAAAGTTTAAATTTTTTTTA-AA-TTTTGATCTTTTTCAAGTATTT-GAAATAAAAATTTGATT
66 GAAAAGTTTAAATTTTTAAAACAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAAATTTGATT
*
32057185 TTTAAGAAAAATAGTGAT
131 TTTAAGAAAAATAGTAAT
*
32057203 TTTTAAAAAAAAAAAAGAGAGTTTAGATTTTTAAAAATAAAAATCTAT-TTTTTAGTCATTTTAA
1 TTTT-AAAAAAAAAAAGAAAGTTTAGATTTTTAAAAATAAAAA-CTATGTTTTTAGTCATTTTAA
* *
32057267 AGGAAACA-TTTAAATTTTGAAAACAAAATTTTGAT-TTTT
64 AGGAAA-AGTTTAAATTTTTAAAAC-AAGTTTTGATCTTTT
32057306 AAGAAAAAAG
Statistics
Matches: 218, Mismatches: 20, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
144 36 0.17
145 55 0.25
146 35 0.16
147 4 0.02
148 46 0.21
149 42 0.19
ACGTcount: A:0.44, C:0.04, G:0.10, T:0.42
Consensus pattern (148 bp):
TTTTAAAAAAAAAAAGAAAGTTTAGATTTTTAAAAATAAAAACTATGTTTTTAGTCATTTTAAAG
GAAAAGTTTAAATTTTTAAAACAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAAATTTGATT
TTTAAGAAAAATAGTAAT
Found at i:32057345 original size:118 final size:119
Alignment explanation
Indices: 32057165--32057424 Score: 347
Period size: 118 Copynumber: 2.2 Consensus size: 119
32057155 TTTTCAAGTA
32057165 TTTGAAATA-AAAA-TTTGATTTTTAAGAAAAATAGTGATTTTTAAAAAAAAAAAAGAGAGTTTA
1 TTTGAAA-ACAAAATTTTGATTTTTAAGAAAAATAGTGATTTTTAAAAAAAAAAAAGAGAGTTTA
*
32057228 GATTTTTAAAAATAAAAATCTATTTTTTAGTCATTTTAAAGGAA-ACA-TTT-AAAT
65 GATTTTTAAAAATAAAAATCTATTTTTCAGTCATTTTAAA-GAAGA-AGTTTAAAAT
****
32057282 TTTGAAAACAAAATTTTGATTTTTAAGAAAAA-AGTGATTTTT-TTTTAAAAAAAGAGGAAGTTT
1 TTTGAAAACAAAATTTTGATTTTTAAGAAAAATAGTGATTTTTAAAAAAAAAAAAGA-G-AGTTT
*
32057345 AGATTTTTAAAAATAAAAATCTGTTTTTCAGTCATTTTAAAGAAGAAGTTTAAAAT
64 AGATTTTTAAAAATAAAAATCTATTTTTCAGTCATTTTAAAGAAGAAGTTTAAAAT
*
32057401 TTT-AAAACAAAGTTTTGATCTTTT
1 TTTGAAAACAAAATTTTGAT-TTTT
32057425 TCAACTATTT
Statistics
Matches: 128, Mismatches: 7, Indels: 14
0.86 0.05 0.09
Matches are distributed among these distances:
116 10 0.08
117 26 0.20
118 81 0.63
119 11 0.09
ACGTcount: A:0.45, C:0.03, G:0.11, T:0.40
Consensus pattern (119 bp):
TTTGAAAACAAAATTTTGATTTTTAAGAAAAATAGTGATTTTTAAAAAAAAAAAAGAGAGTTTAG
ATTTTTAAAAATAAAAATCTATTTTTCAGTCATTTTAAAGAAGAAGTTTAAAAT
Found at i:32060454 original size:3 final size:3
Alignment explanation
Indices: 32060436--32060513 Score: 59
Period size: 3 Copynumber: 25.7 Consensus size: 3
32060426 AAGTGTAAAT
* * * * * * *
32060436 ATA ATG ATA GTA ATA ATA ATA TTA GTA ATA ATA CTA ATA GTA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
32060484 A-A GATA ATA ATA ATAA ATA ATA AAA ATA AT
1 ATA -ATA ATA ATA AT-A ATA ATA ATA ATA AT
32060514 GAACAAAATG
Statistics
Matches: 57, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
2 1 0.02
3 52 0.91
4 4 0.07
ACGTcount: A:0.59, C:0.01, G:0.08, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:32060454 original size:15 final size:15
Alignment explanation
Indices: 32060436--32060499 Score: 67
Period size: 15 Copynumber: 4.3 Consensus size: 15
32060426 AAGTGTAAAT
32060436 ATAATGATAGTAATA
1 ATAATGATAGTAATA
32060451 ATAAT-ATTAGTAATA
1 ATAATGA-TAGTAATA
* *
32060466 ATACTAATAGTAATA
1 ATAATGATAGTAATA
* * *
32060481 GTAAAGATAATAATA
1 ATAATGATAGTAATA
32060496 ATAA
1 ATAA
32060500 ATAATAAAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
14 1 0.03
15 38 0.95
16 1 0.03
ACGTcount: A:0.56, C:0.02, G:0.09, T:0.33
Consensus pattern (15 bp):
ATAATGATAGTAATA
Found at i:32062039 original size:50 final size:49
Alignment explanation
Indices: 32062007--32062342 Score: 200
Period size: 50 Copynumber: 6.8 Consensus size: 49
32061997 TCCACTACAC
* *
32062007 CGTCAGGGAAGTAAGATTCGCAGTTGTGGCTTCAATCTTTTAAATTGCAA
1 CGTCAGGGAAGTAAGATTCGCAGTTGTGGCTTCAATC-TTTCAACTGCAA
* * * * **
32062057 TGTCAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCTGCTGCAA
1 CGTCAGGGAAGTAAGATTCGCAGTTGTGGCTTCAATCT-TTCAACTGCAA
** * * * *
32062107 CG-CCTGGAAGTAAGATTCGCCA-TTATGGCCTT-GATCTTTTAATTGCAA
1 CGTCAGGGAAGTAAGATTCG-CAGTTGTGG-CTTCAATCTTTCAACTGCAA
* * * * * * *
32062155 TGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATTTGTTCCACTGCAA
1 CGTCAGGGAAGTAAGATTCGCAGTTGTGGCTTCAATCT-TTCAACTGCAA
* * * * * * * *
32062205 CGCCAGGG-AGTAAGATTCATC-GTTATGGCATCGATCTTTTAATTACAA
1 CGTCAGGGAAGTAAGATTC-GCAGTTGTGGCTTCAATCTTTCAACTGCAA
* * * * * * * *
32062253 TGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATATGTTCCACTGC-A
1 CGTCAGGGAAGTAAGATTCGCAGTTGTGGCTTCAATCT-TTCAACTGCAA
*
32062302 CCTCTAGGGAAGTAAGATTCGCTA-TTGTGGCTTCAATCTTT
1 CGTC-AGGGAAGTAAGATTCGC-AGTTGTGGCTTCAATCTTT
32062343 TAAATTACAA
Statistics
Matches: 205, Mismatches: 68, Indels: 27
0.68 0.23 0.09
Matches are distributed among these distances:
48 25 0.12
49 89 0.43
50 91 0.44
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (49 bp):
CGTCAGGGAAGTAAGATTCGCAGTTGTGGCTTCAATCTTTCAACTGCAA
Found at i:32062086 original size:100 final size:100
Alignment explanation
Indices: 32061982--32062544 Score: 633
Period size: 98 Copynumber: 5.7 Consensus size: 100
32061972 ATTTGTCATC
* * * *
32061982 GTAGCTTCAATATATTCCACTACACCGTCAGGGAAGTAAGATTCGCAGTTGTGGCTTCAATCTTT
1 GTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCAGTTGTGGCTTCAATCTTT
* * * *
32062047 TAAATTGCAATGTCAGGGAAGCAAGATTCGCTGTT
66 TAAATTACAATGTCGGGGAAGCAAGATTCACCGTT
* ** * * * *
32062082 GTAGCTTCAATCTATTCTGCTGCAACGCC-TGGAAGTAAGATTCGCCA-TTATGGCCTT-GATCT
1 GTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCG-CAGTTGTGG-CTTCAATCT
* *
32062144 TTT-AATTGCAATGTCGGGGAAGCAAGATTCGCCGTT
64 TTTAAATTACAATGTCGGGGAAGCAAGATTCACCGTT
* * * * * *
32062180 GTAGCTTCAATTTGTTCCACTGCAACGCCAGGG-AGTAAGATTCATC-GTTATGGCATCGATCTT
1 GTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTC-GCAGTTGTGGCTTCAATCTT
32062243 TT-AATTACAATGTCGGGGAAGCAAGATTCACCGTT
65 TTAAATTACAATGTCGGGGAAGCAAGATTCACCGTT
* * *
32062278 GTAGCTTCAATATGTTCCACTGCACCTCTAGGGAAGTAAGATTCGCTA-TTGTGGCTTCAATCTT
1 GTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGC-AGTTGTGGCTTCAATCTT
32062342 TTAAATTACAATGTCGGGGGAAGCAAGATTCACCGTT
65 TTAAATTACAATGTC-GGGGAAGCAAGATTCACCGTT
* * * * * * *
32062379 GTAGCTTCAATCTGTTTCGCCGTACCGCCTA-GGAAGTAAGATTTGCCGTTGTGGCCTCAATCTT
1 GTAGCTTCAATCTGTTCCACTGCACCGCC-AGGGAAGTAAGATTCGCAGTTGTGGCTTCAATCTT
* *
32062443 TTAAATTTCAATGTCGAGGAAGCAAGATTCACCGTT
65 TTAAATTACAATGTCGGGGAAGCAAGATTCACCGTT
* * * * *
32062479 GTAGCTTCAATCTGTTCCATTGCACTGCCTGGGAAGTAAGATTTGCCGTTGTGGAC-TCAATCTT
1 GTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCAGTTGTGG-CTTCAATCTT
32062543 TT
65 TT
32062545 CATTGGAAAC
Statistics
Matches: 401, Mismatches: 47, Indels: 30
0.84 0.10 0.06
Matches are distributed among these distances:
97 2 0.00
98 142 0.35
99 53 0.13
100 116 0.29
101 87 0.22
102 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (100 bp):
GTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCAGTTGTGGCTTCAATCTTT
TAAATTACAATGTCGGGGAAGCAAGATTCACCGTT
Found at i:32062463 original size:50 final size:51
Alignment explanation
Indices: 32062013--32062544 Score: 153
Period size: 50 Copynumber: 10.7 Consensus size: 51
32062003 ACACCGTCAG
* * * * *
32062013 GGAAGTAAGATTCGCAGTTGTGGCTTCAATCTTTTAAATTGCAATGTCAG-
1 GGAAGTAAGATTTGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGCCTGA
* * * * * * **** *
32062063 GGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCTGCTGCAACGCCT--
1 GGAAGTAAGATTTGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGCCTGA
* * * ** * *
32062112 GGAAGTAAGATTCGCCATTATGGCCTTGATCTTTT-AATTGCAATGTC-GG
1 GGAAGTAAGATTTGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGCCTGA
* * * * ** * *
32062161 GGAAGCAAGATTCGCCGTTGTAGCTTCAAT-TTGTTCCACTGCAACGCC--A
1 GGAAGTAAGATTTGCCGTTGTGGCCTCAATCTT-TTAAATTGCAATGCCTGA
* *** * * * * * *
32062210 GGGAGTAAGATTCATCGTTATGGCATCGATCTTTT-AATTACAATGTC-GG
1 GGAAGTAAGATTTGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGCCTGA
* ** * * * * ** * *
32062259 GGAAGCAAGATTCACCGTTGTAGCTTCAATATGTTCCACTGC-A--CCTCTA
1 GGAAGTAAGATTTGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGCCT-GA
* ** * * * * *
32062308 GGGAAGTAAGATTCGCTATTGTGGCTTCAATCTTTTAAATTACAATGTCGGG
1 -GGAAGTAAGATTTGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGCCTGA
* ** * * **** * **
32062360 GGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTT-CGCCGTACCGCCT-A
1 GGAAGTAAGATTTGCCGTTGTGGCCTCAATCT-TTTAAATTGCAATGCCTGA
* *
32062410 GGAAGTAAGATTTGCCGTTGTGGCCTCAATCTTTTAAATTTCAATGTC-GA
1 GGAAGTAAGATTTGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGCCTGA
* ** * * * ** *
32062460 GGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCATTGCACTGCCTG-
1 GGAAGTAAGATTTGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGCCTGA
*
32062510 GGAAGTAAGATTTGCCGTTGTGGACTCAATCTTTT
1 GGAAGTAAGATTTGCCGTTGTGGCCTCAATCTTTT
32062545 CATTGGAAAC
Statistics
Matches: 336, Mismatches: 129, Indels: 34
0.67 0.26 0.07
Matches are distributed among these distances:
47 1 0.00
48 16 0.05
49 105 0.31
50 178 0.53
51 32 0.10
52 3 0.01
53 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (51 bp):
GGAAGTAAGATTTGCCGTTGTGGCCTCAATCTTTTAAATTGCAATGCCTGA
Found at i:32067903 original size:32 final size:30
Alignment explanation
Indices: 32067862--32067996 Score: 123
Period size: 30 Copynumber: 4.4 Consensus size: 30
32067852 ATCAAATGCT
*
32067862 CAAATCAATTTGGAAATATATATATACATATA
1 CAAATCAATTCGG-AATATATATAT-CATATA
* *
32067894 CAAATCAATTCGGCA-ATGTATATCTATATA
1 CAAATCAATTCGGAATATATATATC-ATATA
* *
32067924 CAAATCAATTCGGCAATGTATAT-CCATATA
1 CAAATCAATTCGG-AATATATATATCATATA
* * *
32067954 CAAATCAATTCAGCAATGTATAT-CCATATA
1 CAAATCAATTC-GGAATATATATATCATATA
*
32067984 AAAATCAATTCGG
1 CAAATCAATTCGG
32067997 TAGTGTATAA
Statistics
Matches: 89, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
29 2 0.02
30 67 0.75
31 4 0.04
32 16 0.18
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (30 bp):
CAAATCAATTCGGAATATATATATCATATA
Found at i:32067923 original size:30 final size:30
Alignment explanation
Indices: 32067882--32068005 Score: 194
Period size: 30 Copynumber: 4.1 Consensus size: 30
32067872 TGGAAATATA
*
32067882 TATATACATATACAAATCAATTCGGCAATG
1 TATATCCATATACAAATCAATTCGGCAATG
*
32067912 TATATCTATATACAAATCAATTCGGCAATG
1 TATATCCATATACAAATCAATTCGGCAATG
*
32067942 TATATCCATATACAAATCAATTCAGCAATG
1 TATATCCATATACAAATCAATTCGGCAATG
* * *
32067972 TATATCCATATAAAAATCAATTCGGTAGTG
1 TATATCCATATACAAATCAATTCGGCAATG
32068002 TATA
1 TATA
32068006 AAATATGTAC
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 86 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (30 bp):
TATATCCATATACAAATCAATTCGGCAATG
Found at i:32074373 original size:23 final size:22
Alignment explanation
Indices: 32074347--32074604 Score: 115
Period size: 23 Copynumber: 11.0 Consensus size: 22
32074337 TGGACAGCTT
32074347 ATATACAACAAATTAGGCAGCAA
1 ATATACAACAAATT-GGCAGCAA
* *
32074370 ATATACAACAAATTGAGTAGCAT
1 ATATACAACAAATTG-GCAGCAA
* * * * **
32074393 TTTTACACCAAAAATTGGACAACTT
1 ATATACA--ACAAATTGG-CAGCAA
32074418 ATATACAACAAATTGGGCAGCAA
1 ATATACAACAAATT-GGCAGCAA
* *
32074441 ATATACAGCAAATTGAGCAGCAT
1 ATATACAACAAATTG-GCAGCAA
* * *
32074464 TTTTACATCAAAATTGGACAGCATA
1 ATATACAAC-AAATTGG-CAGCA-A
* *
32074489 TATATACAATAATTTGGGCAGCATA
1 -ATATACAACAAATT-GGCAGCA-A
*
32074514 A-ATACAACAAATTGGGCAGCAT
1 ATATACAACAAATT-GGCAGCAA
* * *
32074536 TTA-AGCATAAAAATTGGACAGCAT
1 ATATA-CA-ACAAATTGG-CAGCAA
* * *
32074560 ATATGCAACAAATTGAGCAGTAT
1 ATATACAACAAATTG-GCAGCAA
* *
32074583 ATGTACAAGAAATTGGGCAGCA
1 ATATACAACAAATT-GGCAGCA
32074605 TTTAAGCATC
Statistics
Matches: 179, Mismatches: 38, Indels: 36
0.71 0.15 0.14
Matches are distributed among these distances:
22 3 0.02
23 110 0.61
24 33 0.18
25 26 0.15
26 7 0.04
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (22 bp):
ATATACAACAAATTGGCAGCAA
Found at i:32074525 original size:72 final size:70
Alignment explanation
Indices: 32074319--32074607 Score: 330
Period size: 71 Copynumber: 4.1 Consensus size: 70
32074309 AACTAGACAA
* *
32074319 CATTTTCACACCAAAATTTGGACAGCTTATATACAACAAATTAGGCAGCAAATATACAACAAATT
1 CATTTTTACACCAAAA-TTGGACAGCTTATATACAACAAATTGGGCAGCAAATATACAACAAATT
*
32074384 GAGTAG
65 GAGCAG
* *
32074390 CATTTTTACACCAAAAATTGGACAACTTATATACAACAAATTGGGCAGCAAATATACAGCAAATT
1 CATTTTTACACC-AAAATTGGACAGCTTATATACAACAAATTGGGCAGCAAATATACAACAAATT
32074455 GAGCAG
65 GAGCAG
* * *
32074461 CATTTTTACATCAAAATTGGACAGCATATATATACAATAATTTGGGCAGCATAA-ATACAACAAA
1 CATTTTTACACCAAAATTGGACAGC-T-TATATACAACAAATTGGGCAGCA-AATATACAACAAA
*
32074525 TTGGGCAG
63 TTGAGCAG
* ** * * * * * * *
32074533 CA-TTTAAGCATAAAAATTGGACAGCATATATGCAACAAATTGAGCAGTATATGTACAAGAAATT
1 CATTTTTA-CACCAAAATTGGACAGCTTATATACAACAAATTGGGCAGCAAATATACAACAAATT
*
32074597 GGGCAG
65 GAGCAG
32074603 CATTT
1 CATTT
32074608 AAGCATCAAA
Statistics
Matches: 189, Mismatches: 22, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
69 1 0.01
70 48 0.25
71 79 0.42
72 59 0.31
73 2 0.01
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.26
Consensus pattern (70 bp):
CATTTTTACACCAAAATTGGACAGCTTATATACAACAAATTGGGCAGCAAATATACAACAAATTG
AGCAG
Found at i:32075375 original size:28 final size:28
Alignment explanation
Indices: 32075343--32075412 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
32075333 TTTAATAAGT
*
32075343 TCGCACACTTAGTGCTTAATAATCAAAC
1 TCGCACACTTAGTGCTTAACAATCAAAC
* * *
32075371 TCGCACACTTAGTGCTTTACCATTAAAC
1 TCGCACACTTAGTGCTTAACAATCAAAC
*
32075399 TTGCACACTTAGTG
1 TCGCACACTTAGTG
32075413 TCGAAAGTCT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (28 bp):
TCGCACACTTAGTGCTTAACAATCAAAC
Found at i:32080105 original size:27 final size:27
Alignment explanation
Indices: 32080069--32080188 Score: 134
Period size: 27 Copynumber: 4.4 Consensus size: 27
32080059 TACAGGGGCT
*
32080069 TTACGATCATTTTACCCTACAAGGGTA
1 TTACGGTCATTTTACCCTACAAGGGTA
* * * **
32080096 TTATGGTCATTTAACCTTATGAGGGTA
1 TTACGGTCATTTTACCCTACAAGGGTA
*
32080123 TTACGGTCATTTTACCCTTA-AAGGGCA
1 TTACGGTCATTTTACCC-TACAAGGGTA
** *
32080150 TTATAGTCATTTTACCCTACAGGGGTA
1 TTACGGTCATTTTACCCTACAAGGGTA
32080177 TTACGGTCATTT
1 TTACGGTCATTT
32080189 AACCTTATGG
Statistics
Matches: 74, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
26 2 0.03
27 70 0.95
28 2 0.03
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (27 bp):
TTACGGTCATTTTACCCTACAAGGGTA
Found at i:32080153 original size:54 final size:54
Alignment explanation
Indices: 32080059--32080188 Score: 158
Period size: 54 Copynumber: 2.4 Consensus size: 54
32080049 AAATCGATCA
* * * *
32080059 TACAGGGGCT-TTACGATCATTTTACCCTACAAGGGTATTATGGTCATTTAACCT
1 TACAGGGG-TATTACGGTCATTTTACCCTACAAGGGCATTATAGTCATTTAACCC
* *
32080113 TA-TGAGGGTATTACGGTCATTTTACCCTTA-AAGGGCATTATAGTCATTTTACCC
1 TACAG-GGGTATTACGGTCATTTTACCC-TACAAGGGCATTATAGTCATTTAACCC
32080167 TACAGGGGTATTACGGTCATTT
1 TACAGGGGTATTACGGTCATTT
32080189 AACCTTATGG
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
53 2 0.03
54 60 0.92
55 3 0.05
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.36
Consensus pattern (54 bp):
TACAGGGGTATTACGGTCATTTTACCCTACAAGGGCATTATAGTCATTTAACCC
Found at i:32080201 original size:27 final size:27
Alignment explanation
Indices: 32080069--32080212 Score: 121
Period size: 27 Copynumber: 5.4 Consensus size: 27
32080059 TACAGGGGCT
* * * *
32080069 TTACGATCATTTTACCCTACAAGGGTA
1 TTACGGTCATTTAACCTTATAAGGGTA
* *
32080096 TTATGGTCATTTAACCTTATGAGGGTA
1 TTACGGTCATTTAACCTTATAAGGGTA
* *
32080123 TTACGGTCATTTTACCCTTA-AAGGGCA
1 TTACGGTCA-TTTAACCTTATAAGGGTA
** * * * *
32080150 TTATAGTCATTTTACCCTACAGGGGTA
1 TTACGGTCATTTAACCTTATAAGGGTA
**
32080177 TTACGGTCATTTAACCTTATGGGGGTA
1 TTACGGTCATTTAACCTTATAAGGGTA
32080204 -TACGGTCAT
1 TTACGGTCAT
32080213 CTTACAACCT
Statistics
Matches: 92, Mismatches: 23, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
26 16 0.17
27 67 0.73
28 9 0.10
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (27 bp):
TTACGGTCATTTAACCTTATAAGGGTA
Found at i:32085302 original size:28 final size:28
Alignment explanation
Indices: 32085261--32085336 Score: 90
Period size: 28 Copynumber: 2.9 Consensus size: 28
32085251 CTTTGTAAAA
*
32085261 TTTGCACTTCGGTGCTTATTGATATTAT
1 TTTGCACTTTGGTGCTTATTGATATTAT
32085289 TTTGCACTTTGGTGCTTATTG---TTAT
1 TTTGCACTTTGGTGCTTATTGATATTAT
* *
32085314 TTT-TACTTT-GTGCTTAGTGATAT
1 TTTGCACTTTGGTGCTTATTGATAT
32085337 ATGATATGCA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
23 9 0.21
24 5 0.12
25 7 0.17
26 1 0.02
28 20 0.48
ACGTcount: A:0.16, C:0.12, G:0.18, T:0.54
Consensus pattern (28 bp):
TTTGCACTTTGGTGCTTATTGATATTAT
Found at i:32086258 original size:21 final size:19
Alignment explanation
Indices: 32086208--32086259 Score: 68
Period size: 21 Copynumber: 2.6 Consensus size: 19
32086198 TTTGTGCAAT
32086208 AGTATAGATACCTTTTATA
1 AGTATAGATACCTTTTATA
32086227 AGGTATAGATACCTTTTGTATA
1 A-GTATAGATACC-TTT-TATA
*
32086249 AGTATCGATAC
1 AGTATAGATAC
32086260 TTTGCCCTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 1 0.03
20 11 0.38
21 12 0.41
22 5 0.17
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
AGTATAGATACCTTTTATA
Found at i:32086262 original size:20 final size:19
Alignment explanation
Indices: 32086208--32086262 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 19
32086198 TTTGTGCAAT
*
32086208 AGTATAGATACCTTTTATA
1 AGTATAGATACTTTTTATA
32086227 AGGTATAGATACCTTTTGTATA
1 A-GTATAGATA-CTTTT-TATA
*
32086249 AGTATCGATACTTT
1 AGTATAGATACTTT
32086263 GCCCTTGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 1 0.03
20 13 0.42
21 12 0.39
22 5 0.16
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.42
Consensus pattern (19 bp):
AGTATAGATACTTTTTATA
Found at i:32087795 original size:18 final size:19
Alignment explanation
Indices: 32087761--32087797 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
32087751 TAGCTAATTC
32087761 CTAATAATCAGAAATAAAT
1 CTAATAATCAGAAATAAAT
*
32087780 CTAATATTCA-AAATAAAT
1 CTAATAATCAGAAATAAAT
32087798 AAAAAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.30
Consensus pattern (19 bp):
CTAATAATCAGAAATAAAT
Found at i:32090055 original size:50 final size:50
Alignment explanation
Indices: 32089971--32090206 Score: 256
Period size: 50 Copynumber: 4.8 Consensus size: 50
32089961 ATTTGGGTAA
* *
32089971 AGAGATCCTATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* *
32090021 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * *
32090071 AGAGGTCCC-TCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGATCCCAT-GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* ** *
32090121 AGA-ACTCCCATGT---A--ATATCTGGGGTATGGCATTGGCA--GTATATG
1 AGAGA-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* * *
32090165 AAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
32090207 TGTTATTATC
Statistics
Matches: 161, Mismatches: 15, Indels: 21
0.82 0.08 0.11
Matches are distributed among these distances:
43 1 0.01
44 15 0.09
45 20 0.12
47 2 0.01
49 20 0.12
50 102 0.63
51 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (50 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:32092421 original size:18 final size:18
Alignment explanation
Indices: 32092394--32092430 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
32092384 TGTAGATTTC
32092394 CAAAAATGGAAATGGAAA
1 CAAAAATGGAAATGGAAA
*
32092412 CAAAATTGGAAATGGAAA
1 CAAAAATGGAAATGGAAA
32092430 C
1 C
32092431 TTGTAATCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.57, C:0.08, G:0.22, T:0.14
Consensus pattern (18 bp):
CAAAAATGGAAATGGAAA
Found at i:32092581 original size:18 final size:16
Alignment explanation
Indices: 32092558--32092596 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
32092548 AATTTTCTCG
32092558 AAATTTTACCAGGGGTTA
1 AAATTTTA-CAGGGG-TA
*
32092576 AAATTTTACTGGGGTA
1 AAATTTTACAGGGGTA
32092592 AAATT
1 AAATT
32092597 AGGGTGAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 5 0.25
18 8 0.40
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.36
Consensus pattern (16 bp):
AAATTTTACAGGGGTA
Found at i:32095028 original size:9 final size:8
Alignment explanation
Indices: 32095001--32095033 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
32094991 TAATTTTATT
32095001 TTTATAAA
1 TTTATAAA
32095009 TTTATAAA
1 TTTATAAA
32095017 TTTATAAAA
1 TTTAT-AAA
32095026 TTT-TAAA
1 TTTATAAA
32095033 T
1 T
32095034 ATTTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 4 0.17
8 14 0.58
9 6 0.25
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TTTATAAA
Found at i:32095549 original size:15 final size:16
Alignment explanation
Indices: 32095531--32095560 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32095521 CTAAAATTCT
32095531 AAAAATTA-AAAAATA
1 AAAAATTATAAAAATA
32095546 AAAAATTATAAAAAT
1 AAAAATTATAAAAAT
32095561 TATTAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAAATTATAAAAATA
Found at i:32095558 original size:10 final size:10
Alignment explanation
Indices: 32095543--32095644 Score: 59
Period size: 10 Copynumber: 10.1 Consensus size: 10
32095533 AAATTAAAAA
32095543 ATAAAAAATT
1 ATAAAAAATT
32095553 AT-AAAAATT
1 ATAAAAAATT
32095562 ATTAAAAAATTT
1 A-TAAAAAA-TT
***
32095574 ATAACTTATT
1 ATAAAAAATT
* * *
32095584 ATCAAGATTT
1 ATAAAAAATT
32095594 AT-AAAAATT
1 ATAAAAAATT
32095603 AT--AAAATT
1 ATAAAAAATT
*
32095611 CATTAAAAATTT
1 -A-TAAAAAATT
*
32095623 ATAAAGAATT
1 ATAAAAAATT
32095633 ATAAAATAATT
1 ATAAAA-AATT
32095644 A
1 A
32095645 AAATTATAAA
Statistics
Matches: 70, Mismatches: 14, Indels: 15
0.71 0.14 0.15
Matches are distributed among these distances:
8 6 0.09
9 16 0.23
10 25 0.36
11 15 0.21
12 8 0.11
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (10 bp):
ATAAAAAATT
Found at i:32095563 original size:9 final size:9
Alignment explanation
Indices: 32095523--32095655 Score: 87
Period size: 9 Copynumber: 14.3 Consensus size: 9
32095513 GAATCATTCT
*
32095523 AAAATTCTA
1 AAAATTATA
32095532 AAAATTA-A
1 AAAATTATA
32095540 AAAA-TA-A
1 AAAATTATA
32095547 AAAATTATA
1 AAAATTATA
32095556 AAAATTATTAA
1 AAAATTA-T-A
32095567 AAAATTTATA
1 AAAA-TTATA
**
32095577 ACTTATTATCA
1 A-AAATTAT-A
* *
32095588 AGATTTATA
1 AAAATTATA
32095597 AAAATTAT-
1 AAAATTATA
32095605 AAAATTCATTA
1 AAAATT-A-TA
32095616 AAAATTTATA
1 AAAA-TTATA
32095626 AAGAATTAT-
1 AA-AATTATA
* *
32095635 AAAATAATT
1 AAAATTATA
32095644 AAAATTATA
1 AAAATTATA
32095653 AAA
1 AAA
32095656 TAAAAAAACC
Statistics
Matches: 100, Mismatches: 11, Indels: 26
0.73 0.08 0.19
Matches are distributed among these distances:
7 7 0.07
8 18 0.18
9 34 0.34
10 20 0.20
11 16 0.16
12 5 0.05
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.35
Consensus pattern (9 bp):
AAAATTATA
Found at i:32095582 original size:19 final size:20
Alignment explanation
Indices: 32095544--32095655 Score: 69
Period size: 19 Copynumber: 5.8 Consensus size: 20
32095534 AATTAAAAAA
32095544 TAAAAAATTATAAAAATTAT
1 TAAAAAATTATAAAAATTAT
* *
32095564 TAAAAAATT-TATAACTTAT
1 TAAAAAATTATAAAAATTAT
* *
32095583 TATCAAGATTTATAAAAATTA-
1 TA--AAAAATTATAAAAATTAT
32095604 T--AAAATTCATTAAAAATT-T
1 TAAAAAATT-A-TAAAAATTAT
* *
32095623 ATAAAGAATTAT-AAAATAAT
1 -TAAAAAATTATAAAAATTAT
32095643 T--AAAATTATAAAA
1 TAAAAAATTATAAAA
32095656 TAAAAAAACC
Statistics
Matches: 70, Mismatches: 11, Indels: 24
0.67 0.10 0.23
Matches are distributed among these distances:
17 11 0.16
18 4 0.06
19 24 0.34
20 12 0.17
21 7 0.10
22 12 0.17
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.37
Consensus pattern (20 bp):
TAAAAAATTATAAAAATTAT
Found at i:32098680 original size:31 final size:31
Alignment explanation
Indices: 32098645--32098707 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
32098635 TGACTCAAAA
32098645 ACTGAAAATTCAAAAGTAAAAAAGTATAGGG
1 ACTGAAAATTCAAAAGTAAAAAAGTATAGGG
32098676 ACTGAAAATTCAAAAGTAAAAAAGTATAGGG
1 ACTGAAAATTCAAAAGTAAAAAAGTATAGGG
32098707 A
1 A
32098708 TTAGAATTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.56, C:0.06, G:0.19, T:0.19
Consensus pattern (31 bp):
ACTGAAAATTCAAAAGTAAAAAAGTATAGGG
Found at i:32100745 original size:24 final size:25
Alignment explanation
Indices: 32100701--32100751 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
32100691 ATCGGCATTA
**
32100701 TTATAATATGAATATTATAA-TATT
1 TTATAATAAAAATATTATAATTATT
32100725 TTATAATAAAAAT-TTATTAATTATT
1 TTATAATAAAAATATTA-TAATTATT
32100750 TT
1 TT
32100752 GATGTAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 3 0.13
24 14 0.61
25 6 0.26
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (25 bp):
TTATAATAAAAATATTATAATTATT
Found at i:32116023 original size:11 final size:11
Alignment explanation
Indices: 32116002--32116047 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
32115992 ATATAAATTC
32116002 AAAAAAT-TTT
1 AAAAAATATTT
32116012 AAAAAATATTT
1 AAAAAATATTT
*
32116023 AAAAATTA-TT
1 AAAAAATATTT
*
32116033 -AAAAATATAT
1 AAAAAATATTT
32116043 AAAAA
1 AAAAA
32116048 TGGCAAATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
9 6 0.20
10 10 0.33
11 14 0.47
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AAAAAATATTT
Found at i:32116028 original size:20 final size:20
Alignment explanation
Indices: 32116003--32116048 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
32115993 TATAAATTCA
*
32116003 AAAAATT-TTAAAAAATATTT
1 AAAAATTATT-AAAAATATAT
32116023 AAAAATTATTAAAAATATAT
1 AAAAATTATTAAAAATATAT
32116043 AAAAAT
1 AAAAAT
32116049 GGCAAATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
AAAAATTATTAAAAATATAT
Found at i:32124098 original size:84 final size:87
Alignment explanation
Indices: 32123990--32124198 Score: 268
Period size: 85 Copynumber: 2.4 Consensus size: 87
32123980 TGTTATCGAC
*
32123990 GGGAATAAATCTCGAAACAAATTTTATTTAATTTTAATTTA-TCATTTTGGAAATAAAAT-AAA-
1 GGGAATAAATCTCGAAACAAATTTTATTTAATTTTAA-ATACTCATTTTGGAAATAAAATCAAAT
32124052 TAATAATAAAATCCGTTGAACGGT
65 TAA-AATAAAATCCGTTGAACGGT
* *
32124076 GGGAATAAA-C-CCAAACAGATTTTATTTTAA-TTTAAATACTCATTTTGGAAATAAAATCAAAT
1 GGGAATAAATCTCGAAACAAATTTTA-TTTAATTTTAAATACTCATTTTGGAAATAAAATCAAAT
* *
32124138 TGAAATAACATCCGTTGAACGGT
65 TAAAATAAAATCCGTTGAACGGT
* * * *
32124161 AGGAATAAATCTCGAAACATATTTTATTCACTTTTAAA
1 GGGAATAAATCTCGAAACAAATTTTATTTAATTTTAAA
32124199 AAATATATTT
Statistics
Matches: 106, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
83 2 0.02
84 35 0.33
85 36 0.34
86 15 0.14
87 18 0.17
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (87 bp):
GGGAATAAATCTCGAAACAAATTTTATTTAATTTTAAATACTCATTTTGGAAATAAAATCAAATT
AAAATAAAATCCGTTGAACGGT
Found at i:32124211 original size:14 final size:16
Alignment explanation
Indices: 32124192--32124225 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
32124182 TTTTATTCAC
32124192 TTTTAAAAA-A-TATA
1 TTTTAAAAATATTATA
32124206 TTTTAAAAATATTATA
1 TTTTAAAAATATTATA
32124222 TTTT
1 TTTT
32124226 TTTCTTTTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.50
15 1 0.06
16 8 0.44
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTTAAAAATATTATA
Found at i:32127585 original size:15 final size:16
Alignment explanation
Indices: 32127557--32127586 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32127547 TATATATATA
32127557 TATATTTGTAAATTTT
1 TATATTTGTAAATTTT
32127573 TATATTT-TAAATTT
1 TATATTTGTAAATTT
32127587 CTTTTAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (16 bp):
TATATTTGTAAATTTT
Found at i:32128064 original size:7 final size:7
Alignment explanation
Indices: 32128052--32128077 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
32128042 ATATATATAT
32128052 TTTTTAA
1 TTTTTAA
32128059 TTTTTAA
1 TTTTTAA
32128066 TTTTTAA
1 TTTTTAA
32128073 TTTTT
1 TTTTT
32128078 TTATTTTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTAA
Found at i:32128297 original size:30 final size:29
Alignment explanation
Indices: 32128249--32128311 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 29
32128239 CAGTTGAACT
*
32128249 TAAATTTTAAAATCTAAAAAGTAAAAAGAC
1 TAAATTTTAAAATATAAAAA-TAAAAAGAC
* *
32128279 TAAATTCTTAAAA-ATAAAAATATAAGGAC
1 TAAATT-TTAAAATATAAAAATAAAAAGAC
32128308 TAAA
1 TAAA
32128312 CTCTAATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 11 0.38
30 12 0.41
31 6 0.21
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.27
Consensus pattern (29 bp):
TAAATTTTAAAATATAAAAATAAAAAGAC
Found at i:32131644 original size:41 final size:43
Alignment explanation
Indices: 32131598--32131685 Score: 110
Period size: 44 Copynumber: 2.1 Consensus size: 43
32131588 ATAATTATAA
* *
32131598 ATTAAATTAT-A-TTTTTTACA-TGTGTAATTATCACAACTTCT
1 ATTAAATTATAACTATTTT-CAGTGTATAATTATCACAACTTCT
*
32131639 ATTAAATTATAACTATTTTCAGTTGTATAATTATCATAACTTCT
1 ATTAAATTATAACTATTTTCAG-TGTATAATTATCACAACTTCT
32131683 ATT
1 ATT
32131686 TTACATCAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
41 10 0.25
42 3 0.08
43 5 0.12
44 22 0.55
ACGTcount: A:0.35, C:0.11, G:0.05, T:0.49
Consensus pattern (43 bp):
ATTAAATTATAACTATTTTCAGTGTATAATTATCACAACTTCT
Found at i:32137079 original size:2 final size:2
Alignment explanation
Indices: 32137074--32137105 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
32137064 AACTCATGCT
32137074 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32137106 ATTATTTGGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:32142352 original size:3 final size:3
Alignment explanation
Indices: 32142303--32142336 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
32142293 TTTTATCCTC
32142303 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
32142337 TTAACAATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:32154809 original size:39 final size:38
Alignment explanation
Indices: 32154754--32154859 Score: 151
Period size: 39 Copynumber: 2.8 Consensus size: 38
32154744 AGAAGTATGT
* *
32154754 TGTTATTCAGGCTTTGTGCCTAGCAGGTTTTATG-CTGG
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCTCTATGTC-GG
* *
32154792 TGTTATTTCAGGTTTTGTGCCTAGCAGGCTCTGTGTCGG
1 TGTTA-TTCAGGCTTTGTGCCTAGCAGGCTCTATGTCGG
32154831 TGTTATTCAGGCTTTGTGCCTAGCAGGCT
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCT
32154860 ATGTGTCGAT
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 28 0.46
39 32 0.52
40 1 0.02
ACGTcount: A:0.12, C:0.18, G:0.29, T:0.41
Consensus pattern (38 bp):
TGTTATTCAGGCTTTGTGCCTAGCAGGCTCTATGTCGG
Found at i:32154849 original size:38 final size:38
Alignment explanation
Indices: 32154754--32154867 Score: 158
Period size: 38 Copynumber: 3.0 Consensus size: 38
32154744 AGAAGTATGT
* * *
32154754 TGTTATTCAGGCTTTGTGCCTAGCAGGTTTTATG-CTGG
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCTATGTGTC-GG
* *
32154792 TGTTATTTCAGGTTTTGTGCCTAGCAGGCTCTGTGTCGG
1 TGTTA-TTCAGGCTTTGTGCCTAGCAGGCTATGTGTCGG
32154831 TGTTATTCAGGCTTTGTGCCTAGCAGGCTATGTGTCG
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCTATGTGTCG
32154868 ATGTATTAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
38 35 0.51
39 32 0.47
40 1 0.01
ACGTcount: A:0.12, C:0.18, G:0.30, T:0.40
Consensus pattern (38 bp):
TGTTATTCAGGCTTTGTGCCTAGCAGGCTATGTGTCGG
Found at i:32165944 original size:11 final size:11
Alignment explanation
Indices: 32165930--32165971 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
32165920 TTCAATTATT
*
32165930 TTTTTCTTTTG
1 TTTTTCTTTTC
32165941 TTTTT-TTTTC
1 TTTTTCTTTTC
*
32165951 TGATTTCTTTTC
1 T-TTTTCTTTTC
32165963 TTTTTCTTT
1 TTTTTCTTT
32165972 ATCATTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
10 5 0.19
11 15 0.58
12 6 0.23
ACGTcount: A:0.02, C:0.12, G:0.05, T:0.81
Consensus pattern (11 bp):
TTTTTCTTTTC
Found at i:32165978 original size:22 final size:22
Alignment explanation
Indices: 32165932--32165984 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
32165922 CAATTATTTT
* * * *
32165932 TTTCTTTTGTTTTTTTTTCTGA
1 TTTCTTTTCTTTTTCTTTATCA
32165954 TTTCTTTTCTTTTTCTTTATCA
1 TTTCTTTTCTTTTTCTTTATCA
32165976 TTT-TTTTCT
1 TTTCTTTTCT
32165985 CTTGATCACT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 6 0.22
22 21 0.78
ACGTcount: A:0.06, C:0.13, G:0.04, T:0.77
Consensus pattern (22 bp):
TTTCTTTTCTTTTTCTTTATCA
Found at i:32168967 original size:32 final size:31
Alignment explanation
Indices: 32168906--32168967 Score: 72
Period size: 32 Copynumber: 2.0 Consensus size: 31
32168896 CCTGAATAGT
** *
32168906 CTTTGGTGTGAACACTCAAACTTGGACGGTC
1 CTTTGGTGTGAACACTCAAAAGTGAACGGTC
32168937 CTTTGGGTGTGAACAC-CAAGAAGTGAACGGT
1 CTTT-GGTGTGAACACTCAA-AAGTGAACGGT
32168968 TCATTAGTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
31 7 0.27
32 19 0.73
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (31 bp):
CTTTGGTGTGAACACTCAAAAGTGAACGGTC
Found at i:32169905 original size:27 final size:27
Alignment explanation
Indices: 32169867--32169921 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
32169857 CACACTATCA
32169867 TCATCATCTTAGTACTCATTTTGGTTC
1 TCATCATCTTAGTACTCATTTTGGTTC
32169894 TCATCATCTTAGTACTCATTTTGGTTC
1 TCATCATCTTAGTACTCATTTTGGTTC
32169921 T
1 T
32169922 TACTCTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.18, C:0.22, G:0.11, T:0.49
Consensus pattern (27 bp):
TCATCATCTTAGTACTCATTTTGGTTC
Found at i:32169911 original size:15 final size:15
Alignment explanation
Indices: 32169867--32169912 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
32169857 CACACTATCA
32169867 TCATCATCTTAGTAC
1 TCATCATCTTAGTAC
* *
32169882 TCAT--T-TTGGTTC
1 TCATCATCTTAGTAC
32169894 TCATCATCTTAGTAC
1 TCATCATCTTAGTAC
32169909 TCAT
1 TCAT
32169913 TTTGGTTCTT
Statistics
Matches: 24, Mismatches: 4, Indels: 6
0.71 0.12 0.18
Matches are distributed among these distances:
12 9 0.38
13 1 0.04
14 1 0.04
15 13 0.54
ACGTcount: A:0.22, C:0.24, G:0.09, T:0.46
Consensus pattern (15 bp):
TCATCATCTTAGTAC
Found at i:32170148 original size:26 final size:26
Alignment explanation
Indices: 32170119--32170172 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
32170109 GTGCAAAGTG
32170119 TTGGAGTATGAATGCTTCAAATGTAT
1 TTGGAGTATGAATGCTTCAAATGTAT
32170145 TTGGAGTATGAATGCTTCAAATGTAT
1 TTGGAGTATGAATGCTTCAAATGTAT
32170171 TT
1 TT
32170173 TGTGTAGTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (26 bp):
TTGGAGTATGAATGCTTCAAATGTAT
Found at i:32174508 original size:18 final size:18
Alignment explanation
Indices: 32174485--32174520 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
32174475 CAGATAAAAA
32174485 TGCAGGCAATTCTTGCAT
1 TGCAGGCAATTCTTGCAT
32174503 TGCAGGCAATTCTTGCAT
1 TGCAGGCAATTCTTGCAT
32174521 AGAAGGTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (18 bp):
TGCAGGCAATTCTTGCAT
Found at i:32182283 original size:16 final size:16
Alignment explanation
Indices: 32182262--32182292 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32182252 GAAATAAGTA
32182262 AATAATAATAATAATT
1 AATAATAATAATAATT
*
32182278 AATAATCATAATAAT
1 AATAATAATAATAAT
32182293 AGTATTAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.35
Consensus pattern (16 bp):
AATAATAATAATAATT
Found at i:32183910 original size:44 final size:44
Alignment explanation
Indices: 32183862--32183957 Score: 131
Period size: 44 Copynumber: 2.2 Consensus size: 44
32183852 CGTTAGAGAT
* * * *
32183862 ATAGGATTCATCATTTTAATCTGCT-CCACTGCAACTTCAGGGAG
1 ATAGGATTAATAACTTTAATCTG-TACCACTACAACTTCAGGGAG
32183906 ATAGGATTAATAACTTTAATCTGTACCACTACAACTTCAGGGAG
1 ATAGGATTAATAACTTTAATCTGTACCACTACAACTTCAGGGAG
*
32183950 ATAAGATT
1 ATAGGATT
32183958 GGTATCTTCA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 1 0.02
44 45 0.98
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (44 bp):
ATAGGATTAATAACTTTAATCTGTACCACTACAACTTCAGGGAG
Found at i:32183979 original size:44 final size:44
Alignment explanation
Indices: 32183879--32184052 Score: 154
Period size: 44 Copynumber: 3.9 Consensus size: 44
32183869 TCATCATTTT
* * * * *
32183879 AATCTGCTCCACTGCAACTTCAGGGAGATAGGATTAATAACTTT
1 AATCTGCTCCACTACAACTTCAGGGAGATAAGATTGATATCTTC
*
32183923 AATCTG-TACCACTACAACTTCAGGGAGATAAGATTGGTATCTTC
1 AATCTGCT-CCACTACAACTTCAGGGAGATAAGATTGATATCTTC
** * *
32183967 AA-CTTGCTCCACTATGACTTCAGGGAGATAAGGTTTGTTATCTTC
1 AATC-TGCTCCACTACAACTTCAGGGAGATAA-GATTGATATCTTC
* * * * * *
32184012 AGTCTGTTCCACTGCAATTTCAGAGAGATAAGGTTTGATAT
1 AATCTGCTCCACTACAACTTCAGGGAGATAA-GATTGATAT
32184053 GATAAGATCC
Statistics
Matches: 107, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
43 2 0.02
44 61 0.57
45 43 0.40
46 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (44 bp):
AATCTGCTCCACTACAACTTCAGGGAGATAAGATTGATATCTTC
Found at i:32184266 original size:287 final size:287
Alignment explanation
Indices: 32183743--32184863 Score: 1725
Period size: 287 Copynumber: 3.9 Consensus size: 287
32183733 CCACTACGAC
* *
32183743 TTCAGGGAGATAAGGTTTGATATGATAAGATCCGCTATCTACAGTCTGCTCCACTATAACTTTAG
1 TTCAGGGAGATAAGGTTTGATATGATAAGATCCACTATCTACAGTCTGCTCCACTACAACTTTAG
* * * *
32183808 GGAGATAAGACTTGTTATGATATACTTAATCAGACCTACTTCAACGTTAGAGATATAGGATTCAT
66 GGAGATAAGACTTGTTATGATAGACTTAATCAGACCTACTGCAACGTCAGAGGTATAGGATTCAT
* * * *
32183873 CATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTAATAACTTTAATCT-GTACCACTA
131 CATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAATAGCTTCAATCTACT-CCACTA
* **
32183937 CAACTTCAGGGAGATAAGATTGGTATCTTCAACTTGCTCCACTATGACTTCAGGGAGATAAGGTT
195 CAACTTCAGGGAGATAAGATTGGTATCTTCAACTTACTCCACTACAACTTCAGGGAGATAAGGTT
32184002 TGTTATCTTCAGTCTGTTCCACTGCAAT
260 TGTTATCTTCAGTCTGTTCCACTGCAAT
* *
32184030 TTCAGAGAGATAAGGTTTGATATGATAAGATCCACTATCTACAGTATGCTCCACTACAACTTTAG
1 TTCAGGGAGATAAGGTTTGATATGATAAGATCCACTATCTACAGTCTGCTCCACTACAACTTTAG
* * * * *
32184095 GAAGATAAGACTTGTTATGATAGACTTAATCTGGCCTACTGTAACGTCAGAGGTATAAGATTCAT
66 GGAGATAAGACTTGTTATGATAGACTTAATCAGACCTACTGCAACGTCAGAGGTATAGGATTCAT
* *
32184160 CGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAATAGCTTTAATCTACTCCACTAC
131 CATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAATAGCTTCAATCTACTCCACTAC
* ** * * *
32184225 AACTTCAGGGAGATAGGATTAATAGCTTTAA-TCTACTCCACTACAACTTCAGGGAGATAA-GAT
196 AACTTCAGGGAGATAAGATTGGTATCTTCAACT-TACTCCACTACAACTTCAGGGAGATAAGGTT
* **
32184288 TGGTATCTTCAACCT-TCTCCACTGCAACT
260 TGTTATCTTCAGTCTGT-TCCACTGCAA-T
*
32184317 TT-AGGGAGATAACGTTTGATATGATAAGATCCACTATCTACAGTCTGCTCCACTACAACTTTAG
1 TTCAGGGAGATAAGGTTTGATATGATAAGATCCACTATCTACAGTCTGCTCCACTACAACTTTAG
*
32184381 GGAGATAAGACTTGTTATGATAGACTTAATCAGACCTACTGCAACATCAGAGGTATAGGATTCAT
66 GGAGATAAGACTTGTTATGATAGACTTAATCAGACCTACTGCAACGTCAGAGGTATAGGATTCAT
* * * *
32184446 CATTTTAATCCACTCCACTGCAACTTCATGGAGATAGGATTAATAGCTTCAATCTGCACCACTAC
131 CATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAATAGCTTCAATCTACTCCACTAC
* * * *
32184511 AACTTTAGGGAGATAAGATTGGTATATTCAACTTACTCCACTGCGACTTCAGGGAGATAAGGTTT
196 AACTTCAGGGAGATAAGATTGGTATCTTCAACTTACTCCACTACAACTTCAGGGAGATAAGGTTT
*
32184576 GTTATCCTCAGTCTGTTCCACTGCAAT
261 GTTATCTTCAGTCTGTTCCACTGCAAT
32184603 TTCAGGGAGATAAGGTTTGATATGATAAGATCCACTATCTACAGTCTGCTCCACTACAACTTTAG
1 TTCAGGGAGATAAGGTTTGATATGATAAGATCCACTATCTACAGTCTGCTCCACTACAACTTTAG
*
32184668 GGAGATAAGACTTGTTATGGTAGACTTAATCCAG-CCTACTGCAACGTCAGAGGTATAGGATTCA
66 GGAGATAAGACTTGTTATGATAGACTTAAT-CAGACCTACTGCAACGTCAGAGGTATAGGATTCA
* * *
32184732 TCTTTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTAATAGCTTCAATTTACTCCACTA
130 TCATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAATAGCTTCAATCTACTCCACTA
32184797 CAACTTCAGGGAGATAAGATTGGTATCTTCAATCTT-CTCCACTACAACTTCAGGGAGATAAGGT
195 CAACTTCAGGGAGATAAGATTGGTATCTTCAA-CTTACTCCACTACAACTTCAGGGAGATAAGGT
32184861 TTG
259 TTG
32184864 ATGTGATAAG
Statistics
Matches: 752, Mismatches: 72, Indels: 20
0.89 0.09 0.02
Matches are distributed among these distances:
285 1 0.00
286 254 0.34
287 489 0.65
288 8 0.01
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (287 bp):
TTCAGGGAGATAAGGTTTGATATGATAAGATCCACTATCTACAGTCTGCTCCACTACAACTTTAG
GGAGATAAGACTTGTTATGATAGACTTAATCAGACCTACTGCAACGTCAGAGGTATAGGATTCAT
CATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAATAGCTTCAATCTACTCCACTAC
AACTTCAGGGAGATAAGATTGGTATCTTCAACTTACTCCACTACAACTTCAGGGAGATAAGGTTT
GTTATCTTCAGTCTGTTCCACTGCAAT
Found at i:32184308 original size:44 final size:44
Alignment explanation
Indices: 32184149--32184328 Score: 216
Period size: 44 Copynumber: 4.1 Consensus size: 44
32184139 CGTCAGAGGT
* * * ** *
32184149 ATAAGATTCATCGTTTTAATCCGCTCCACTGCAACTTCAGGGAG
1 ATAAGATTAATAGCTTTAATCTACTCCACTACAACTTCAGGGAG
*
32184193 ATAGGATTAATAGCTTTAATCTACTCCACTACAACTTCAGGGAG
1 ATAAGATTAATAGCTTTAATCTACTCCACTACAACTTCAGGGAG
*
32184237 ATAGGATTAATAGCTTTAATCTACTCCACTACAACTTCAGGGAG
1 ATAAGATTAATAGCTTTAATCTACTCCACTACAACTTCAGGGAG
** * * * * * *
32184281 ATAAGATTGGTATCTTCAACCTTCTCCACTGCAACTTTAGGGAG
1 ATAAGATTAATAGCTTTAATCTACTCCACTACAACTTCAGGGAG
32184325 ATAA
1 ATAA
32184329 CGTTTGATAT
Statistics
Matches: 120, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 120 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.30
Consensus pattern (44 bp):
ATAAGATTAATAGCTTTAATCTACTCCACTACAACTTCAGGGAG
Found at i:32184697 original size:573 final size:573
Alignment explanation
Indices: 32183691--32184858 Score: 1917
Period size: 573 Copynumber: 2.0 Consensus size: 573
32183681 AGTCTGCTCT
* *
32183691 ACTACAACGTCAGGGAGATAAGACTTGTTGCTTCAACCTACTCCACTACGACTTCAGGGAGATAA
1 ACTACAACTTCAGGGAGATAAGACTTGTTGCTTCAACCTACTCCACTACAACTTCAGGGAGATAA
* * *
32183756 GGTTTGATATGATAAGATCCGCTATCTACAGTCTGCTCCACTATAACTTTAGGGAGATAAGACTT
66 CGTTTGATATGATAAGATCCACTATCTACAGTCTGCTCCACTACAACTTTAGGGAGATAAGACTT
* * * * **
32183821 GTTATGATATACTTAATCAGACCTACTTCAACGTTAGAGATATAGGATTCATCATTTTAATCTGC
131 GTTATGATAGACTTAATCAGACCTACTGCAACATCAGAGATATAGGATTCATCATTTTAATCCAC
* *
32183886 TCCACTGCAACTTCAGGGAGATAGGATTAATAACTTTAATCTGTACCACTACAACTTCAGGGAGA
196 TCCACTGCAACTTCAGGGAGATAGGATTAATAACTTCAATCTGCACCACTACAACTTCAGGGAGA
* * * *
32183951 TAAGATTGGTATCTTCAACTTGCTCCACTATGACTTCAGGGAGATAAGGTTTGTTATCTTCAGTC
261 TAAGATTGGTATATTCAACTTACTCCACTACGACTTCAGGGAGATAAGGTTTGTTATCCTCAGTC
32184016 TGTTCCACTGCAATTTCAGAGAGATAAGGTTTGATATGATAAGATCCACTATCTACAGTATGCTC
326 TGTTCCACTGCAATTTCAGAGAGATAAGGTTTGATATGATAAGATCCACTATCTACAGTATGCTC
** *
32184081 CACTACAACTTTAGGAAGATAAGACTTGTTATGATAGACTTAATCTGGCCTACTGTAACGTCAGA
391 CACTACAACTTTAGGAAGATAAGACTTGTTATGATAGACTTAATCCAGCCTACTGCAACGTCAGA
* *
32184146 GGTATAAGATTCATCGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAATAGCTTTA
456 GGTATAAGATTCATCGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTAATAGCTTCA
* *
32184211 ATCTACTCCACTACAACTTCAGGGAGATAGGATTAATAGCTTTAATCTACTCC
521 ATCTACTCCACTACAACTTCAGGGAGATAAGATTAATAGCTTCAATCTACTCC
* * *
32184264 ACTACAACTTCAGGGAGATAAGA-TTGGTAT-CTTCAACCTTCTCCACTGCAACTTTAGGGAGAT
1 ACTACAACTTCAGGGAGATAAGACTT-GT-TGCTTCAACCTACTCCACTACAACTTCAGGGAGAT
32184327 AACGTTTGATATGATAAGATCCACTATCTACAGTCTGCTCCACTACAACTTTAGGGAGATAAGAC
64 AACGTTTGATATGATAAGATCCACTATCTACAGTCTGCTCCACTACAACTTTAGGGAGATAAGAC
*
32184392 TTGTTATGATAGACTTAATCAGACCTACTGCAACATCAGAGGTATAGGATTCATCATTTTAATCC
129 TTGTTATGATAGACTTAATCAGACCTACTGCAACATCAGAGATATAGGATTCATCATTTTAATCC
* * *
32184457 ACTCCACTGCAACTTCATGGAGATAGGATTAATAGCTTCAATCTGCACCACTACAACTTTAGGGA
194 ACTCCACTGCAACTTCAGGGAGATAGGATTAATAACTTCAATCTGCACCACTACAACTTCAGGGA
*
32184522 GATAAGATTGGTATATTCAACTTACTCCACTGCGACTTCAGGGAGATAAGGTTTGTTATCCTCAG
259 GATAAGATTGGTATATTCAACTTACTCCACTACGACTTCAGGGAGATAAGGTTTGTTATCCTCAG
* *
32184587 TCTGTTCCACTGCAATTTCAGGGAGATAAGGTTTGATATGATAAGATCCACTATCTACAGTCTGC
324 TCTGTTCCACTGCAATTTCAGAGAGATAAGGTTTGATATGATAAGATCCACTATCTACAGTATGC
* *
32184652 TCCACTACAACTTTAGGGAGATAAGACTTGTTATGGTAGACTTAATCCAGCCTACTGCAACGTCA
389 TCCACTACAACTTTAGGAAGATAAGACTTGTTATGATAGACTTAATCCAGCCTACTGCAACGTCA
* *
32184717 GAGGTATAGGATTCATCTTTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTAATAGCTT
454 GAGGTATAAGATTCATCGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTAATAGCTT
* ** * *
32184782 CAATTTACTCCACTACAACTTCAGGGAGATAAGATTGGTATCTTCAATCTTCTCC
519 CAATCTACTCCACTACAACTTCAGGGAGATAAGATTAATAGCTTCAATCTACTCC
32184837 ACTACAACTTCAGGGAGATAAG
1 ACTACAACTTCAGGGAGATAAG
32184859 GTTTGATGTG
Statistics
Matches: 550, Mismatches: 43, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
572 2 0.00
573 547 0.99
574 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (573 bp):
ACTACAACTTCAGGGAGATAAGACTTGTTGCTTCAACCTACTCCACTACAACTTCAGGGAGATAA
CGTTTGATATGATAAGATCCACTATCTACAGTCTGCTCCACTACAACTTTAGGGAGATAAGACTT
GTTATGATAGACTTAATCAGACCTACTGCAACATCAGAGATATAGGATTCATCATTTTAATCCAC
TCCACTGCAACTTCAGGGAGATAGGATTAATAACTTCAATCTGCACCACTACAACTTCAGGGAGA
TAAGATTGGTATATTCAACTTACTCCACTACGACTTCAGGGAGATAAGGTTTGTTATCCTCAGTC
TGTTCCACTGCAATTTCAGAGAGATAAGGTTTGATATGATAAGATCCACTATCTACAGTATGCTC
CACTACAACTTTAGGAAGATAAGACTTGTTATGATAGACTTAATCCAGCCTACTGCAACGTCAGA
GGTATAAGATTCATCGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTAATAGCTTCA
ATCTACTCCACTACAACTTCAGGGAGATAAGATTAATAGCTTCAATCTACTCC
Found at i:32184857 original size:44 final size:44
Alignment explanation
Indices: 32184745--32184858 Score: 176
Period size: 44 Copynumber: 2.6 Consensus size: 44
32184735 TTTTAATCCG
*
32184745 CTCCACTACAACTTCAGGGAGATAGGATTAATAGCTTCAATTTA
1 CTCCACTACAACTTCAGGGAGATAAGATTAATAGCTTCAATTTA
** *
32184789 CTCCACTACAACTTCAGGGAGATAAGATTGGTATCTTCAATCTT-
1 CTCCACTACAACTTCAGGGAGATAAGATTAATAGCTTCAAT-TTA
32184833 CTCCACTACAACTTCAGGGAGATAAG
1 CTCCACTACAACTTCAGGGAGATAAG
32184859 GTTTGATGTG
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
44 63 0.97
45 2 0.03
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (44 bp):
CTCCACTACAACTTCAGGGAGATAAGATTAATAGCTTCAATTTA
Found at i:32184936 original size:242 final size:242
Alignment explanation
Indices: 32184504--32185105 Score: 841
Period size: 242 Copynumber: 2.5 Consensus size: 242
32184494 TCAATCTGCA
* * ** ** * * *
32184504 CCACTACAACTTTAGGGAGATAAGATTGGTATATTCAACTTACTCCACTGCGACTTCAGGGAGAT
1 CCACTACAACTTCAGGGAGATAGGATTAATAGCTTCAATTTACTCCACTACAACTTCAGGGAGAT
* * * * *
32184569 AAGGTTTGTTATCCTCAGTCTGT-TCCACTGCAATTTCAGGGAGATAAGGTTTGATATGATAAGA
66 AA-GATTGGTATCTTCAATCT-TCTCCACTGCAACTTCAGGGAGATAAGGTTTGATATGATAAGA
* * *
32184633 TCCACTATCTACAGTCTGCTCCACTACAACTTTAGGGAGATAAGACTTGTTATGGTAGACTTAAT
129 TCCACTATCTACAGTCTACTCCACTACAAATTTAGGGAGATAAGACTTGTTATGATAGACTTAAT
* * *
32184698 CCAG-CCTACTGCAACGTCAGAGGTATAGGATTCATCTTTTTAATCCGCT
194 -CAGACCTACTACAACATCAGAGGTATAGGATTCATCGTTTTAATCCGCT
32184747 CCACTACAACTTCAGGGAGATAGGATTAATAGCTTCAATTTACTCCACTACAACTTCAGGGAGAT
1 CCACTACAACTTCAGGGAGATAGGATTAATAGCTTCAATTTACTCCACTACAACTTCAGGGAGAT
* * *
32184812 AAGATTGGTATCTTCAATCTTCTCCACTACAACTTCAGGGAGATAAGGTTTGATGTGATAAGATT
66 AAGATTGGTATCTTCAATCTTCTCCACTGCAACTTCAGGGAGATAAGGTTTGATATGATAAGATC
* * *
32184877 CACTATCTGCAGTCTACTCTACTACAAATTTAGGGAGATAAGACTTGTTATGATAGACTTAATCT
131 CACTATCTACAGTCTACTCCACTACAAATTTAGGGAGATAAGACTTGTTATGATAGACTTAATCA
*
32184942 GATCTACTACAACATCAGAGGTATAGGATTCATCGTTTTAATCCGCT
196 GACCTACTACAACATCAGAGGTATAGGATTCATCGTTTTAATCCGCT
* * * *
32184989 CCACTGCAACTTCTGGGAGATAGGATTAATAGCTTTC-ATATGCTCCACTACAACTTCAGGGAGA
1 CCACTACAACTTCAGGGAGATAGGATTAATAGC-TTCAATTTACTCCACTACAACTTCAGGGAGA
* * *
32185053 TAAGATTGGTATCTTCAACCTACTCCACTGCAACTTTAGGGAGATAAGGTTTG
65 TAAGATTGGTATCTTCAATCTTCTCCACTGCAACTTCAGGGAGATAAGGTTTG
32185106 TGGCTTTAAT
Statistics
Matches: 321, Mismatches: 35, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
241 3 0.01
242 257 0.80
243 61 0.19
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (242 bp):
CCACTACAACTTCAGGGAGATAGGATTAATAGCTTCAATTTACTCCACTACAACTTCAGGGAGAT
AAGATTGGTATCTTCAATCTTCTCCACTGCAACTTCAGGGAGATAAGGTTTGATATGATAAGATC
CACTATCTACAGTCTACTCCACTACAAATTTAGGGAGATAAGACTTGTTATGATAGACTTAATCA
GACCTACTACAACATCAGAGGTATAGGATTCATCGTTTTAATCCGCT
Found at i:32185013 original size:44 final size:44
Alignment explanation
Indices: 32184947--32185146 Score: 124
Period size: 44 Copynumber: 4.6 Consensus size: 44
32184937 AATCTGATCT
* * * * * *
32184947 ACTACAACATCAGAGG-TATAGGATTCATCGTTTTAATCCGCTCC
1 ACTACAACTTCAG-GGAGATAGGATTAATAGCTTTAATACGCTCC
* * * *
32184991 ACTGCAACTTCTGGGAGATAGGATTAATAGCTTTCATATGCTCC
1 ACTACAACTTCAGGGAGATAGGATTAATAGCTTTAATACGCTCC
* ** * *
32185035 ACTACAACTTCAGGGAGATAAGATTGGTATCTTCAACCTA--CTCC
1 ACTACAACTTCAGGGAGATAGGATTAATAGCTTTAA--TACGCTCC
* * ** *
32185079 ACTGCAACTTTAGGGAGATAAGG-TTTGTGGCTTTAAT-CTGCTCC
1 ACTACAACTTCAGGGAGAT-AGGATTAATAGCTTTAATAC-GCTCC
*
32185123 ACTACAACTTCA-GGAGATAAGATT
1 ACTACAACTTCAGGGAGATAGGATT
32185147 TGTAGCCTGT
Statistics
Matches: 120, Mismatches: 28, Indels: 17
0.73 0.17 0.10
Matches are distributed among these distances:
42 3 0.03
43 10 0.08
44 103 0.86
45 2 0.02
46 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (44 bp):
ACTACAACTTCAGGGAGATAGGATTAATAGCTTTAATACGCTCC
Found at i:32185037 original size:573 final size:566
Alignment explanation
Indices: 32183691--32185100 Score: 1585
Period size: 573 Copynumber: 2.5 Consensus size: 566
32183681 AGTCTGCTCT
* * * * * *
32183691 ACTACAACGTCAGGGAGATAAGACTT-GT-TGCTTCAACCTACTCCACTACGACTTCAGGGAGAT
1 ACTACAACTTCAGGGAGATAAGA-TTGGTAT-ATTCAACCTTCTCCACTACAAATTTAGGGAGAT
* * * * * * *
32183754 AAGGTTTGATATGATAAGATCCGCTATCTACAGTCTGCTCCACTATAACTTTAGGGAGATAAGAC
64 AACGCTTGATATGATAAG---CAC-ATCTACAGTCTGATCCACTACAACATCAGGGAGATAAGAC
* * * * * ** * * *
32183819 TTGTTATGATATACTTAATCAGACCTACTTCAACGTTAGAGATATAGGATTCATCATTTTAATCT
125 -TGTCATG--ATACTTAATCAGACCCACTGCAACATCAGAGGGATAGGATTAATCACTTTAATAT
* * *
32183884 GCTCCACTGCAACTTCAGGGAGATAGGATTAATAACTTTAATCTGTACCACTACAACTTCAGGGA
187 GCTCCACTGCAACTTCAGGGAGATAGGATTAATAACTTCAATCTGCACCACTACAACTTTAGGGA
* * * *
32183949 GATAAGATTGGTATCTTCAACTTGCTCCACTATGACTTCAGGGAGATAAGGTTTGTTATCTTCAG
252 GATAAGATTGGTATATTCAACTTACTCCACTACGACTTCAGGGAGATAAGGTTTGTTATCCTCAG
32184014 TCTGTTCCACTGCAATTTCAGAGAGATAAGGTTTGATATGATAAGATCCACTATCTACAGTATGC
317 TCTGTTCCACTGCAATTTCAGAGAGATAAGGTTTGATATGATAAGATCCACTATCTACAGTATGC
** *
32184079 TCCACTACAACTTTAGGAAGATAAGACTTGTTATGATAGACTTAATCTGGCCTACTGTAACGTCA
382 TCCACTACAACTTTAGGAAGATAAGACTTGTTATGATAGACTTAATCCAGCCTACTGCAACGTCA
*
32184144 GAGGTATAAGATTCATCGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAATAGCTT
447 GAGGTATAAGATTCATCGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTAATAGCTT
* * *
32184209 TAATCTACTCCACTACAACTTCAGGGAGATAGGATTAATAGCTTTAATCTACTCC
512 CAATCTACTCCACTACAACTTCAGGGAGATAAGATTAATAGCTTCAATCTACTCC
* * *
32184264 ACTACAACTTCAGGGAGATAAGATTGGTATCTTCAACCTTCTCCACTGCAACTTTAGGGAGATAA
1 ACTACAACTTCAGGGAGATAAGATTGGTATATTCAACCTTCTCCACTACAAATTTAGGGAGATAA
* * * *
32184329 CGTTTGATATGATAAGATCCACTATCTACAGTCTGCTCCACTACAACTTTAGGGAGATAAGACTT
66 CGCTTGATATGATAAG---CAC-ATCTACAGTCTGATCCACTACAACATCAGGGAGATAAGAC-T
* * * * * ***
32184394 GTTATGATAGACTTAATCAGACCTACTGCAACATCAGAGGTATAGGATTCATCATTTTAATCCAC
126 GTCATGAT--ACTTAATCAGACCCACTGCAACATCAGAGGGATAGGATTAATCACTTTAATATGC
* *
32184459 TCCACTGCAACTTCATGGAGATAGGATTAATAGCTTCAATCTGCACCACTACAACTTTAGGGAGA
189 TCCACTGCAACTTCAGGGAGATAGGATTAATAACTTCAATCTGCACCACTACAACTTTAGGGAGA
*
32184524 TAAGATTGGTATATTCAACTTACTCCACTGCGACTTCAGGGAGATAAGGTTTGTTATCCTCAGTC
254 TAAGATTGGTATATTCAACTTACTCCACTACGACTTCAGGGAGATAAGGTTTGTTATCCTCAGTC
* *
32184589 TGTTCCACTGCAATTTCAGGGAGATAAGGTTTGATATGATAAGATCCACTATCTACAGTCTGCTC
319 TGTTCCACTGCAATTTCAGAGAGATAAGGTTTGATATGATAAGATCCACTATCTACAGTATGCTC
* *
32184654 CACTACAACTTTAGGGAGATAAGACTTGTTATGGTAGACTTAATCCAGCCTACTGCAACGTCAGA
384 CACTACAACTTTAGGAAGATAAGACTTGTTATGATAGACTTAATCCAGCCTACTGCAACGTCAGA
* *
32184719 GGTATAGGATTCATCTTTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTAATAGCTTCA
449 GGTATAAGATTCATCGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTAATAGCTTCA
* ** * *
32184784 ATTTACTCCACTACAACTTCAGGGAGATAAGATTGGTATCTTCAATCTTCTCC
514 ATCTACTCCACTACAACTTCAGGGAGATAAGATTAATAGCTTCAATCTACTCC
* *
32184837 ACTACAACTTCAGGGAGATAAGGTTTGATGTGATAAGATTCACTATCTGCAGTCTACTCTACTAC
1 ACTACAACTTCAGGGAGATAA-GATTG--GT-AT---ATTCA--A-C--C--T-T-CTCCACTAC
* *
32184902 AAATTTAGGGAGATAA-GACTTGTTATGAT-AG-AC-T-TA-A-TCTGATCTACTACAACATCAG
50 AAATTTAGGGAGATAACG-CTTGATATGATAAGCACATCTACAGTCTGATCCACTACAACATCAG
* * * * * *
32184960 AGG-TATAGGA-T-TCATCG-T-TTTAATCCG-CTCCACTGCAACTTCTG-GGAGATAGGATTAA
114 -GGAGATAAGACTGTCAT-GATACTTAATCAGAC-CCACTGCAACATCAGAGG-GATAGGATTAA
* * * ** * * * *
32185018 T-AGCTTTCATATGCTCCACTACAACTTCAGGGAGATAAGATTGGTATCTTCAACCTACTCCACT
175 TCA-CTTTAATATGCTCCACTGCAACTTCAGGGAGATAGGATTAATAACTTCAATCTGCACCACT
*
32185082 GCAACTTTAGGGAGATAAG
239 ACAACTTTAGGGAGATAAG
32185101 GTTTGTGGCT
Statistics
Matches: 733, Mismatches: 78, Indels: 52
0.85 0.09 0.06
Matches are distributed among these distances:
571 2 0.00
572 6 0.01
573 637 0.87
574 5 0.01
576 6 0.01
577 4 0.01
579 22 0.03
580 7 0.01
581 2 0.00
582 2 0.00
583 1 0.00
584 2 0.00
585 1 0.00
587 1 0.00
588 4 0.01
589 31 0.04
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (566 bp):
ACTACAACTTCAGGGAGATAAGATTGGTATATTCAACCTTCTCCACTACAAATTTAGGGAGATAA
CGCTTGATATGATAAGCACATCTACAGTCTGATCCACTACAACATCAGGGAGATAAGACTGTCAT
GATACTTAATCAGACCCACTGCAACATCAGAGGGATAGGATTAATCACTTTAATATGCTCCACTG
CAACTTCAGGGAGATAGGATTAATAACTTCAATCTGCACCACTACAACTTTAGGGAGATAAGATT
GGTATATTCAACTTACTCCACTACGACTTCAGGGAGATAAGGTTTGTTATCCTCAGTCTGTTCCA
CTGCAATTTCAGAGAGATAAGGTTTGATATGATAAGATCCACTATCTACAGTATGCTCCACTACA
ACTTTAGGAAGATAAGACTTGTTATGATAGACTTAATCCAGCCTACTGCAACGTCAGAGGTATAA
GATTCATCGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTAATAGCTTCAATCTACT
CCACTACAACTTCAGGGAGATAAGATTAATAGCTTCAATCTACTCC
Found at i:32185096 original size:88 final size:87
Alignment explanation
Indices: 32184987--32185146 Score: 234
Period size: 88 Copynumber: 1.8 Consensus size: 87
32184977 TTTTAATCCG
*
32184987 CTCCACTGCAACTTCTGGGAGAT-AGGATTAATAGCTTTCATATGCTCCACTACAACTTCAGGGA
1 CTCCACTGCAACTTCTGGGAGATAAGG-TTAATAGCTTTAATATGCTCCACTACAACTTCA-GGA
32185051 GATAAGATTGGTATCTTCAACCTA
64 GATAAGATTGGTATCTTCAACCTA
** * *
32185075 CTCCACTGCAACTT-TAGGGAGATAAGGTTTGTGGCTTTAATCTGCTCCACTACAACTTCAGGAG
1 CTCCACTGCAACTTCT-GGGAGATAAGGTTAATAGCTTTAATATGCTCCACTACAACTTCAGGAG
32185139 ATAAGATT
65 ATAAGATT
32185147 TGTAGCCTGT
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
87 13 0.20
88 49 0.75
89 3 0.05
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (87 bp):
CTCCACTGCAACTTCTGGGAGATAAGGTTAATAGCTTTAATATGCTCCACTACAACTTCAGGAGA
TAAGATTGGTATCTTCAACCTA
Found at i:32185338 original size:20 final size:21
Alignment explanation
Indices: 32185313--32185355 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
32185303 AGGAAATAGG
*
32185313 ATTCGCTGC-CTTCAGCTTTA
1 ATTCGCTCCACTTCAGCTTTA
*
32185333 ATTCGCTCCACTTGAGCTTTA
1 ATTCGCTCCACTTCAGCTTTA
32185354 AT
1 AT
32185356 GTATTCCACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.19, C:0.28, G:0.14, T:0.40
Consensus pattern (21 bp):
ATTCGCTCCACTTCAGCTTTA
Found at i:32185344 original size:51 final size:51
Alignment explanation
Indices: 32185193--32185334 Score: 194
Period size: 51 Copynumber: 2.8 Consensus size: 51
32185183 CTTCAGTCTT
* * * *
32185193 TAATGTCAAGGAGATAAGATTCGCTACCTTCAGCTTTAATCTATTCCGCTG
1 TAATGCCAAGGAAATAAGATTCGCTACCTTCAGCTTTAATCTGTTCCACTG
* * * *
32185244 CAATGCCAAGGAAACAAGATTCACTACCTTTAGCTTTAATCTGTTCCACTG
1 TAATGCCAAGGAAATAAGATTCGCTACCTTCAGCTTTAATCTGTTCCACTG
* *
32185295 TAATGCCAAGGAAATAGGATTCGCTGCCTTCAGCTTTAAT
1 TAATGCCAAGGAAATAAGATTCGCTACCTTCAGCTTTAAT
32185335 TCGCTCCACT
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 77 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.31
Consensus pattern (51 bp):
TAATGCCAAGGAAATAAGATTCGCTACCTTCAGCTTTAATCTGTTCCACTG
Found at i:32185714 original size:88 final size:88
Alignment explanation
Indices: 32185597--32186061 Score: 653
Period size: 88 Copynumber: 5.3 Consensus size: 88
32185587 CACTACTGCT
* * * * * * *
32185597 TAGGGAGACAATATCTACAATTTTCAACCTACTCTACTGCTGCTTAAGGAGATAAGGCTAGTGTT
1 TAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTGTT
* *
32185662 TTCGATCTGCTTCACTGTCAGTA
66 TTCGATCTACTTCACTGCCAGTA
* * * *
32185685 CAGGAAGACAAGATCTACCATCTTTAACCTACTCCACTGTTGCTCAGGGAGATAAGGCTGGTGTT
1 TAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTGTT
**
32185750 TTCGATCTGTTTCACTGCCAGTA
66 TTCGATCTACTTCACTGCCAGTA
* *
32185773 TAGGAAGACAAGATCTACAATCTTCAACTTATTCCACTGCTGCTCAGGGAGATAAGGCTGGTGTT
1 TAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTGTT
* * *
32185838 TTCTATCTACTTCACTACTAGTA
66 TTCGATCTACTTCACTGCCAGTA
*
32185861 TAGGAAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTGTT
1 TAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTGTT
**
32185926 TTTTATCTACTTCACTGCCAGTA
66 TTCGATCTACTTCACTGCCAGTA
* * *
32185949 TAGGAAGACAAGATCTACAATCTTCAACCTACTCCTCTGCTGCTCAGGAAGATAAGGCTTGTGTT
1 TAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTGTT
* * *
32186014 TTCAATTTACCTT-GCTGCCAGTA
66 TTCGATCTA-CTTCACTGCCAGTA
32186037 TAGGAAGACAAGATCTACAATCTTC
1 TAGGAAGACAAGATCTACAATCTTC
32186062 TTCAATCCAT
Statistics
Matches: 338, Mismatches: 38, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
88 335 0.99
89 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (88 bp):
TAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTGTT
TTCGATCTACTTCACTGCCAGTA
Found at i:32185914 original size:44 final size:44
Alignment explanation
Indices: 32185774--32186004 Score: 128
Period size: 44 Copynumber: 5.2 Consensus size: 44
32185764 CTGCCAGTAT
* * *
32185774 AGGAAGACAAGATCTACAATCTTCAACTTATTCCACTGCTGCTC
1 AGGAAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTC
* * **** * * * * * *
32185818 AGGGAGATAAG-GCTGGTGTTTTCTATCTACTTCACTACTAG-TAT
1 AGGAAGATAAGATCTACAATCTTCAACCTACTCCACTGCT-GCT-C
32185862 AGGAAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTC
1 AGGAAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTC
* * **** * ** * * * *
32185906 AGGGAGATAAG-GCTGGTGTTTTTTATCTACTTCACTGCCAG-TAT
1 AGGAAGATAAGATCTACAATCTTCAACCTACTCCACTG-CTGCT-C
* *
32185950 AGGAAGACAAGATCTACAATCTTCAACCTACTCCTCTGCTGCTC
1 AGGAAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTC
32185994 AGGAAGATAAG
1 AGGAAGATAAG
32186005 GCTTGTGTTT
Statistics
Matches: 123, Mismatches: 56, Indels: 16
0.63 0.29 0.08
Matches are distributed among these distances:
43 34 0.28
44 54 0.44
45 35 0.28
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (44 bp):
AGGAAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTC
Found at i:32187344 original size:6 final size:6
Alignment explanation
Indices: 32187333--32187387 Score: 51
Period size: 6 Copynumber: 9.0 Consensus size: 6
32187323 TTAGCCTCTC
* *
32187333 CTTTTT CTTTTT CTTCTTT -TTTTT CTTCTTT TTCTTTT C-TTTT CTTCTT
1 CTTTTT CTTTTT CTT-TTT CTTTTT CTT-TTT CT-TTTT CTTTTT CTTTTT
32187382 CTTTTT
1 CTTTTT
32187388 TTAAATATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
5 8 0.20
6 21 0.52
7 10 0.25
8 1 0.03
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (6 bp):
CTTTTT
Found at i:32187351 original size:9 final size:9
Alignment explanation
Indices: 32187333--32187381 Score: 55
Period size: 9 Copynumber: 5.3 Consensus size: 9
32187323 TTAGCCTCTC
32187333 CTTTTTCTT
1 CTTTTTCTT
32187342 -TTTCTTCTT
1 CTTT-TTCTT
*
32187351 TTTTTTCTT
1 CTTTTTCTT
32187360 CTTTTTCTT
1 CTTTTTCTT
*
32187369 TTCTTTTCTT
1 CT-TTTTCTT
32187379 CTT
1 CTT
32187382 CTTTTTTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
8 3 0.09
9 20 0.59
10 11 0.32
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (9 bp):
CTTTTTCTT
Found at i:32192701 original size:23 final size:23
Alignment explanation
Indices: 32192675--32192739 Score: 78
Period size: 23 Copynumber: 2.8 Consensus size: 23
32192665 TAATAACTTT
*
32192675 AAAAATGTATGTATATATATTAG
1 AAAAATGTATATATATATATTAG
*
32192698 AAAAATGTGTATATATATATT-G
1 AAAAATGTATATATATATATTAG
* *
32192720 TAGAAACGTATATATATATA
1 -AAAAATGTATATATATATA
32192740 ATGTATATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
22 1 0.03
23 35 0.97
ACGTcount: A:0.48, C:0.02, G:0.12, T:0.38
Consensus pattern (23 bp):
AAAAATGTATATATATATATTAG
Found at i:32200747 original size:26 final size:26
Alignment explanation
Indices: 32200701--32200753 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
32200691 AAAGGAAAAG
*
32200701 GAAAGAAGGAAAATAAGAAAAAGAAA
1 GAAAGAAGGAAAAGAAGAAAAAGAAA
* *
32200727 GAAAGAACGTAAAAGAA-AAAAATAAA
1 GAAAGAA-GGAAAAGAAGAAAAAGAAA
32200753 G
1 G
32200754 CTCAGGAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 16 0.70
27 7 0.30
ACGTcount: A:0.72, C:0.02, G:0.21, T:0.06
Consensus pattern (26 bp):
GAAAGAAGGAAAAGAAGAAAAAGAAA
Found at i:32203136 original size:20 final size:20
Alignment explanation
Indices: 32203111--32203153 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
32203101 ATTTATACTC
32203111 TTATCATTATCTATATTAAA
1 TTATCATTATCTATATTAAA
32203131 TTATCATTATCTATATTAAA
1 TTATCATTATCTATATTAAA
32203151 TTA
1 TTA
32203154 AACTTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (20 bp):
TTATCATTATCTATATTAAA
Found at i:32203246 original size:23 final size:23
Alignment explanation
Indices: 32203202--32203246 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
32203192 TACAATATAA
*
32203202 AATATTAAATTAGAATTCTTATT
1 AATATTAAATTAGAATTATTATT
32203225 AATATTAAATTA-AATTTATTAT
1 AATATTAAATTAGAA-TTATTAT
32203247 CTTTAATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (23 bp):
AATATTAAATTAGAATTATTATT
Found at i:32203485 original size:18 final size:16
Alignment explanation
Indices: 32203464--32203507 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
32203454 TCCATCATAA
32203464 TATTTTACATATTTTAAT
1 TATTTTA-ATA-TTTAAT
*
32203482 TATTTTTAATATTTATT
1 TA-TTTTAATATTTAAT
32203499 TATTTTAAT
1 TATTTTAAT
32203508 TATAAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 7 0.29
17 7 0.29
18 5 0.21
19 5 0.21
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (16 bp):
TATTTTAATATTTAAT
Found at i:32203496 original size:17 final size:19
Alignment explanation
Indices: 32203466--32203504 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
32203456 CATCATAATA
32203466 TTTTACATATTTTAATTAT
1 TTTTACATATTTTAATTAT
*
32203485 TTTTA-ATA-TTTATTTAT
1 TTTTACATATTTTAATTAT
32203502 TTT
1 TTT
32203505 AATTATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
18 3 0.16
19 5 0.26
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTACATATTTTAATTAT
Found at i:32203538 original size:20 final size:21
Alignment explanation
Indices: 32203499--32203541 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
32203489 AATATTTATT
32203499 TATTTTAATTATAAAATAAAA
1 TATTTTAATTATAAAATAAAA
32203520 TATTTT-ATT-TAATAATAAAA
1 TATTTTAATTATAA-AATAAAA
32203540 TA
1 TA
32203542 ATTAAATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.14
20 12 0.57
21 6 0.29
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TATTTTAATTATAAAATAAAA
Found at i:32204607 original size:94 final size:93
Alignment explanation
Indices: 32204448--32204672 Score: 265
Period size: 94 Copynumber: 2.4 Consensus size: 93
32204438 GAAATTAAGC
* * * *
32204448 TTAATC-CTACATTGATAGGGAACACTCTCAT-GCTCACACTTACCTTATAAATAAGTGTCAATT
1 TTAATCTC-ACATTGATAGAGAACACTCTCATAACTCACACTTAACTTATAAATAAGTGACAATT
* * *
32204511 TCTTCATTATTTTCATTAAAAGGTTAATT
65 TCTTCACTATTTTCATAAAAAAGTTAATT
* * * * *
32204540 TTAATCTCATATTGACTAGAGAACACTCTCATATCTCATATTTAACTTATAAGTAAGTGACAATT
1 TTAATCTCACATTGA-TAGAGAACACTCTCATAACTCACACTTAACTTATAAATAAGTGACAATT
*
32204605 TCTTCCCTATTTTCATAAAAAAGTTAATT
65 TCTTCACTATTTTCATAAAAAAGTTAATT
* * *
32204634 TTAATCTCACATTGATTACAAAATACTCTCATAACTCAC
1 TTAATCTCACATTGA-TAGAGAACACTCTCATAACTCAC
32204673 TTCTTCACTA
Statistics
Matches: 111, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
92 12 0.11
93 16 0.14
94 83 0.75
ACGTcount: A:0.35, C:0.19, G:0.08, T:0.38
Consensus pattern (93 bp):
TTAATCTCACATTGATAGAGAACACTCTCATAACTCACACTTAACTTATAAATAAGTGACAATTT
CTTCACTATTTTCATAAAAAAGTTAATT
Found at i:32204911 original size:96 final size:94
Alignment explanation
Indices: 32204731--32204986 Score: 289
Period size: 96 Copynumber: 2.7 Consensus size: 94
32204721 ACACTTATCC
* * * * * * *
32204731 TATAAATAAGTGTCAATTTCTTCATTATTTTTATTTAAAAGTTAATCTTAATCTCACGTTGAGTA
1 TATAAATAAGTGACAATTTCTTCACTATTTTCATTAAAAAATTAATTTTAATCTCACGTTGACTA
* * *
32204796 GAGAACACTCTCATGTCTCATATTTAACT
66 GAGAACACCCTCATATCTCACATTTAACT
* * *
32204825 TATAAATAAGTGACAACTTCTTCACTATTTTCATTAAAAAAAATTAGTTTTAATCTCACTTTGAC
1 TATAAATAAGTGACAATTTCTTCACTATTTTCATT--AAAAAATTAATTTTAATCTCACGTTGAC
* *
32204890 TAGGGAACACCCTCATATCTCACATTTACCT
64 TAGAGAACACCCTCATATCTCACATTTAACT
* * * * * * *
32204921 TATAAATAAGTGA-TATTTGTTTACTATTTTGATTAAAAATTTAATTTTAATCTCAGGTTAACTA
1 TATAAATAAGTGACAATTTCTTCACTATTTTCATTAAAAAATTAATTTTAATCTCACGTTGACTA
32204985 GA
66 GA
32204987 AAGTACTCTT
Statistics
Matches: 134, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
93 26 0.19
94 31 0.23
95 16 0.12
96 61 0.46
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (94 bp):
TATAAATAAGTGACAATTTCTTCACTATTTTCATTAAAAAATTAATTTTAATCTCACGTTGACTA
GAGAACACCCTCATATCTCACATTTAACT
Found at i:32208582 original size:15 final size:15
Alignment explanation
Indices: 32208562--32208591 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
32208552 GAGGTATGTT
32208562 AAGAAATATTTAAAA
1 AAGAAATATTTAAAA
*
32208577 AAGAAATTTTTAAAA
1 AAGAAATATTTAAAA
32208592 TATTTTCTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAGAAATATTTAAAA
Found at i:32210818 original size:20 final size:20
Alignment explanation
Indices: 32210789--32210835 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
32210779 ATATATCTTG
32210789 AATT-ATTTGATTCTAAT-A
1 AATTAATTTGATTCTAATCA
*
32210807 AATTTAATTTGATTTTAATCA
1 AA-TTAATTTGATTCTAATCA
32210828 AATTAATT
1 AATTAATT
32210836 CAATTGCCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 2 0.08
19 2 0.08
20 18 0.72
21 3 0.12
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (20 bp):
AATTAATTTGATTCTAATCA
Found at i:32218135 original size:130 final size:130
Alignment explanation
Indices: 32217902--32218659 Score: 875
Period size: 130 Copynumber: 5.9 Consensus size: 130
32217892 CATGTAAAAC
* * * * * *
32217902 AACTTGTTGATTTAAGATCACAGATGATATTATTAAGGCTCGTTAATTTACGATCACAGCTTAAG
1 AACTTGTTGATTTAATATCACAGTTGATATTATTAAGGCTCATTGATTTACGATCACAACCTAAG
* * *
32217967 TTCAATGATTTATTATCATGAATAATCTTTTCTAAGTTAGTTGATTTACTATCTCTACTCCAAAT
66 TTCATTGATTTACTATCATGAATAATCTTCTCTAAGTTAGTTGATTTACTATCTCTACTCCAAAT
*
32218032 AACTTGTTGATTTAATATCACAGTTGATATTATTAAGGCTCATTGATTTACGATTACAACCTAAG
1 AACTTGTTGATTTAATATCACAGTTGATATTATTAAGGCTCATTGATTTACGATCACAACCTAAG
* * * * *
32218097 TTCATTAATTTACTATCATAAACAATCTTTTCTAAGTTAGTTGATTTACTATCGCTACTCCAAAT
66 TTCATTGATTTACTATCATGAATAATCTTCTCTAAGTTAGTTGATTTACTATCTCTACTCCAAAT
* ** *
32218162 AGCTTGTTGATTTAATATCACAGTTGATATTATTAAGGCTCGCTGATTTACGATCAAAACCTAAG
1 AACTTGTTGATTTAATATCACAGTTGATATTATTAAGGCTCATTGATTTACGATCACAACCTAAG
* * *
32218227 TTTATTAATTTACTATCATGAATAATATTCTCTAAGTTAGTTGATTTACTATCGT-TACT-C-AA
66 TTCATTGATTTACTATCATGAATAATCTTCTCTAAGTTAGTTGATTTACTATC-TCTACTCCAAA
32218289 T
130 T
* * * ** * *
32218290 AGCTCGCTGATTTAAGGTCACAATTGATATTATTAAGGCTCGTTGATTTACGATCACAACCTAAG
1 AACTTGTTGATTTAATATCACAGTTGATATTATTAAGGCTCATTGATTTACGATCACAACCTAAG
* * * * *
32218355 TTCATTGATTTACTATCATGTAA-AATCTTCTATGAGTTAGCTGATTAATTATCTCTACTCCAAA
66 TTCATTGATTTACTATCATG-AATAATCTTCTCTAAGTTAGTTGATTTACTATCTCTACTCCAAA
*
32218419 C
130 T
* *** * * * ** *
32218420 AGCTCACTGGTTTAATATCACAGCTGATATTGTTAAGGCTCATTGATTTACGATCACGGCCTAAA
1 AACTTGTTGATTTAATATCACAGTTGATATTATTAAGGCTCATTGATTTACGATCACAACCTAAG
* * *
32218485 TTCATTGATTTAATATCATGAACAATCTTCTCTAAGTTAGTTCATTTACTAT-TGCTACTCCAAA
66 TTCATTGATTTACTATCATGAATAATCTTCTCTAAGTTAGTTGATTTACTATCT-CTACTCCAAA
*
32218549 C
130 T
* * * * * * * *
32218550 AA-TTCATAGATTTAATATCATAGCTGATATTATTAAGGCTCACTAATTTACGATAACAACCAAA
1 AACTT-GTTGATTTAATATCACAGTTGATATTATTAAGGCTCATTGATTTACGATCACAACCTAA
* * *
32218614 GTTCATTTATTTACAATCATGAATAATCCTTC-CTGAGTT-GTTGATT
65 GTTCATTGATTTACTATCATGAATAAT-CTTCTCTAAGTTAGTTGATT
32218660 CATGATAATA
Statistics
Matches: 541, Mismatches: 78, Indels: 19
0.85 0.12 0.03
Matches are distributed among these distances:
127 1 0.00
128 107 0.20
129 14 0.03
130 415 0.77
131 4 0.01
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.39
Consensus pattern (130 bp):
AACTTGTTGATTTAATATCACAGTTGATATTATTAAGGCTCATTGATTTACGATCACAACCTAAG
TTCATTGATTTACTATCATGAATAATCTTCTCTAAGTTAGTTGATTTACTATCTCTACTCCAAAT
Found at i:32218212 original size:67 final size:66
Alignment explanation
Indices: 32218006--32218212 Score: 165
Period size: 67 Copynumber: 3.2 Consensus size: 66
32217996 TTCTAAGTTA
*
32218006 GTTGATTTACTATCTCTACTCCAAATAACTTGTTGATTTAATATCACAGTTGATATTATTAAGGC
1 GTTGATTTACTATC-CTACTCCAAATAGCTTGTTGATTTAATATCACAGTTGATATTATTAAGGC
32218071 TC
65 TC
* * * * * * * * **** * *
32218073 ATTGATTTACGAT--TACAACC-TA-AG-TTCATTAATTTACTATCATAAACAATCTTTTCTAA-
1 GTTGATTTACTATCCTAC-TCCAAATAGCTT-GTTGATTTAATATCACAGTTGATATTAT-TAAG
* *
32218132 GTTA
63 GCTC
32218136 GTTGATTTACTATCGCTACTCCAAATAGCTTGTTGATTTAATATCACAGTTGATATTATTAAGGC
1 GTTGATTTACTATC-CTACTCCAAATAGCTTGTTGATTTAATATCACAGTTGATATTATTAAGGC
32218201 TC
65 TC
*
32218203 GCTGATTTAC
1 GTTGATTTAC
32218213 GATCAAAACC
Statistics
Matches: 96, Mismatches: 34, Indels: 20
0.64 0.23 0.13
Matches are distributed among these distances:
62 2 0.02
63 32 0.33
64 7 0.07
65 4 0.04
66 7 0.07
67 42 0.44
68 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (66 bp):
GTTGATTTACTATCCTACTCCAAATAGCTTGTTGATTTAATATCACAGTTGATATTATTAAGGCT
C
Found at i:32218436 original size:258 final size:261
Alignment explanation
Indices: 32217909--32218636 Score: 892
Period size: 258 Copynumber: 2.8 Consensus size: 261
32217899 AACAACTTGT
* * * *
32217909 TGATTTAAGATCACAGATGATATTATTAAGGCTCGTTAATTTACGATCACAGCTTAAGTTCAATG
1 TGATTTAATATCACAGATGATATTATTAAGGCTCGTTGATTTACGATCACAGCCTAAGTTCATTG
* * *
32217974 ATTTATTATCATGAATAATCTTTTCTAAGTTAGTTGATTTACTATC-TCTACTCCAAATAACTTG
66 ATTTAATATCATGAATAATCTTCTCTAAGTTAGTTGATTTACTATCGT-TACTCCAAATAACTCG
* *
32218038 TTGATTTAATATCACAGTTGATATTATTAAGGCTCATTGATTTACGATTACAACCTAAGTTCATT
130 ATGATTTAATATCACAGTTGATATTATTAAGGCTCATTGATTTACGATAACAACCTAAGTTCATT
* * * * * *
32218103 AATTTACTATCAT-AAACAATCTTTTCTAAGTTAGTTGATTTACTATCGCTACTCCAAATAGCTT
195 AATTTACTATCATGAAACAATCTTCTATAAGTTAGCTGATTAACTATCGCTACTCCAAACAGCTC
**
32218167 GT
260 AC
* * * * * *
32218169 TGATTTAATATCACAGTTGATATTATTAAGGCTCGCTGATTTACGATCAAAACCTAAGTTTATTA
1 TGATTTAATATCACAGATGATATTATTAAGGCTCGTTGATTTACGATCACAGCCTAAGTTCATTG
* * * *
32218234 ATTTACTATCATGAATAATATTCTCTAAGTTAGTTGATTTACTATCGTTACT-C-AATAGCTCGC
66 ATTTAATATCATGAATAATCTTCTCTAAGTTAGTTGATTTACTATCGTTACTCCAAATAACTCGA
** * * * *
32218297 TGATTTAAGGTCACAATTGATATTATTAAGGCTCGTTGATTTACGATCACAACCTAAGTTCATTG
131 TGATTTAATATCACAGTTGATATTATTAAGGCTCATTGATTTACGATAACAACCTAAGTTCATTA
* * * *
32218362 ATTTACTATCATGTAA-AATCTTCTATGAGTTAGCTGATTAATTATCTCTACTCCAAACAGCTCA
196 ATTTACTATCATGAAACAATCTTCTATAAGTTAGCTGATTAACTATCGCTACTCCAAACAGCTCA
32218426 C
261 C
* * * * * *
32218427 TGGTTTAATATCACAGCTGATATTGTTAAGGCTCATTGATTTACGATCACGGCCTAAATTCATTG
1 TGATTTAATATCACAGATGATATTATTAAGGCTCGTTGATTTACGATCACAGCCTAAGTTCATTG
* * * * * *
32218492 ATTTAATATCATGAACAATCTTCTCTAAGTTAGTTCATTTACTATTGCTACTCCAAACAATTC-A
66 ATTTAATATCATGAATAATCTTCTCTAAGTTAGTTGATTTACTATCGTTACTCCAAATAACTCGA
* * * * *
32218556 TAGATTTAATATCATAGCTGATATTATTAAGGCTCACTAATTTACGATAACAACCAAAGTTCATT
131 T-GATTTAATATCACAGTTGATATTATTAAGGCTCATTGATTTACGATAACAACCTAAGTTCATT
* *
32218621 TATTTACAATCATGAA
195 AATTTACTATCATGAA
32218637 TAATCCTTCC
Statistics
Matches: 395, Mismatches: 68, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
258 216 0.55
259 5 0.01
260 173 0.44
261 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (261 bp):
TGATTTAATATCACAGATGATATTATTAAGGCTCGTTGATTTACGATCACAGCCTAAGTTCATTG
ATTTAATATCATGAATAATCTTCTCTAAGTTAGTTGATTTACTATCGTTACTCCAAATAACTCGA
TGATTTAATATCACAGTTGATATTATTAAGGCTCATTGATTTACGATAACAACCTAAGTTCATTA
ATTTACTATCATGAAACAATCTTCTATAAGTTAGCTGATTAACTATCGCTACTCCAAACAGCTCA
C
Found at i:32218635 original size:388 final size:388
Alignment explanation
Indices: 32217909--32218640 Score: 1022
Period size: 388 Copynumber: 1.9 Consensus size: 388
32217899 AACAACTTGT
* *
32217909 TGATTTAAGATCACAGATGATATTATTAAGGCTCGTTAATTTACGATCACAGCTTAAGTTCAATG
1 TGATTTAAGATCACAGATGATATTATTAAGGCTCGTTAATTTACGATCACAACCTAAGTTCAATG
* * * * * * ***
32217974 ATTTATTATCATGAATAATCTTTTCTAAGTTAGTTGATTTACTATCTCTACTCCAAATAACTTGT
66 ATTTACTATCATGAATAATCTTCTATAAGTTAGCTGATTAACTATCTCTACTCCAAACAACTCAC
* * *
32218039 TGATTTAATATCACAGTTGATATTATTAAGGCTCATTGATTTACGATTACAACCTAAGTTCATTA
131 TGATTTAATATCACAGCTGATATTATTAAGGCTCATTGATTTACGATCACAACCTAAATTCATTA
* * * * * *
32218104 ATTTACTATCATAAACAATCTTTTCTAAGTTAGTTGATTTACTATCGCTACTCCAAATAGCTTGT
196 ATTTAATATCATAAACAATCTTCTCTAAGTTAGTTCATTTACTATCGCTACTCCAAACAGATTAT
* * * * * *
32218169 TGATTTAATATCACAGTTGATATTATTAAGGCTCGCTGATTTACGATCAAAACCTAAGTTTATTA
261 AGATTTAATATCACAGCTGATATTATTAAGGCTCACTAATTTACGATCAAAACCAAAGTTCATTA
*
32218234 ATTTACTATCATGAATAATATTCTCTAAGTTAGTTGATTTACTATCGTTACTCAATAGCTCGC
326 ATTTACAATCATGAATAATATTCTCTAAGTTAGTTGATTTACTATCGTTACTCAATAGCTCGC
* * *
32218297 TGATTTAAGGTCACA-ATTGATATTATTAAGGCTCGTTGATTTACGATCACAACCTAAGTTCATT
1 TGATTTAAGATCACAGA-TGATATTATTAAGGCTCGTTAATTTACGATCACAACCTAAGTTCAAT
* * *
32218361 GATTTACTATCATGTAA-AATCTTCTATGAGTTAGCTGATTAATTATCTCTACTCCAAACAGCTC
65 GATTTACTATCATG-AATAATCTTCTATAAGTTAGCTGATTAACTATCTCTACTCCAAACAACTC
* * **
32218425 ACTGGTTTAATATCACAGCTGATATTGTTAAGGCTCATTGATTTACGATCACGGCCTAAATTCAT
129 ACTGATTTAATATCACAGCTGATATTATTAAGGCTCATTGATTTACGATCACAACCTAAATTCAT
* * *
32218490 TGATTTAATATCATGAACAATCTTCTCTAAGTTAGTTCATTTACTATTGCTACTCCAAACA-ATT
194 TAATTTAATATCATAAACAATCTTCTCTAAGTTAGTTCATTTACTATCGCTACTCCAAACAGATT
*
32218554 CATAGATTTAATATCATAGCTGATATTATTAAGGCTCACTAATTTACGAT-AACAACCAAAGTTC
259 -ATAGATTTAATATCACAGCTGATATTATTAAGGCTCACTAATTTACGATCAA-AACCAAAGTTC
*
32218618 ATTTATTTACAATCATGAATAAT
322 ATTAATTTACAATCATGAATAAT
32218641 CCTTCCTGAG
Statistics
Matches: 298, Mismatches: 42, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
387 5 0.02
388 291 0.98
389 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (388 bp):
TGATTTAAGATCACAGATGATATTATTAAGGCTCGTTAATTTACGATCACAACCTAAGTTCAATG
ATTTACTATCATGAATAATCTTCTATAAGTTAGCTGATTAACTATCTCTACTCCAAACAACTCAC
TGATTTAATATCACAGCTGATATTATTAAGGCTCATTGATTTACGATCACAACCTAAATTCATTA
ATTTAATATCATAAACAATCTTCTCTAAGTTAGTTCATTTACTATCGCTACTCCAAACAGATTAT
AGATTTAATATCACAGCTGATATTATTAAGGCTCACTAATTTACGATCAAAACCAAAGTTCATTA
ATTTACAATCATGAATAATATTCTCTAAGTTAGTTGATTTACTATCGTTACTCAATAGCTCGC
Found at i:32222037 original size:14 final size:15
Alignment explanation
Indices: 32222012--32222040 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32222002 GATATATAGA
32222012 TTTCTATCTCTTTTT
1 TTTCTATCTCTTTTT
32222027 TTTCT-TCTCTTTTT
1 TTTCTATCTCTTTTT
32222041 ACTAGTTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTCTATCTCTTTTT
Found at i:32222202 original size:73 final size:73
Alignment explanation
Indices: 32222120--32222267 Score: 269
Period size: 73 Copynumber: 2.0 Consensus size: 73
32222110 AAATATTTAT
32222120 TTTTAATACAAACGAAAGTCGAGGATACTTAAAAAGGATGGATGTGTATATATACATGCATGTAA
1 TTTTAATACAAACGAAAGTCGAGGATACTTAAAAAGGATGGATGTGTATATATACATGCATGTAA
*
32222185 AAATTAGC
66 AAAATAGC
* *
32222193 TTTTAATACAAATGAAAGTCGGGGATACTTAAAAAGGATGGATGTGTATATATACATGCATGTAA
1 TTTTAATACAAACGAAAGTCGAGGATACTTAAAAAGGATGGATGTGTATATATACATGCATGTAA
32222258 AAAATAGC
66 AAAATAGC
32222266 TT
1 TT
32222268 CATCTTTTTA
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 72 1.00
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.30
Consensus pattern (73 bp):
TTTTAATACAAACGAAAGTCGAGGATACTTAAAAAGGATGGATGTGTATATATACATGCATGTAA
AAAATAGC
Found at i:32231179 original size:31 final size:31
Alignment explanation
Indices: 32231112--32231180 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
32231102 CTTAACAACC
* **
32231112 CAATGACTTGAATAAAAACTTTTGAATAATT
1 CAATGACTTAAATAAAAACTTTCAAATAATT
* * *
32231143 GAATGACTTAAATGAAAACTTTCAAATAGTT
1 CAATGACTTAAATAAAAACTTTCAAATAATT
32231174 CAATGAC
1 CAATGAC
32231181 CATTTTTGTA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.32
Consensus pattern (31 bp):
CAATGACTTAAATAAAAACTTTCAAATAATT
Found at i:32235613 original size:29 final size:27
Alignment explanation
Indices: 32235566--32235636 Score: 70
Period size: 29 Copynumber: 2.6 Consensus size: 27
32235556 TAAAATATAT
** * *
32235566 TAAAAATTATTAAATAATGTCAACATTA
1 TAAAAATTAAAAAAAAATGTAAACA-TA
32235594 TCAAAAATTAAAAAAAAATGTAAACATA
1 T-AAAAATTAAAAAAAAATGTAAACATA
* *
32235622 TAAATATGAAAAAAA
1 TAAAAATTAAAAAAA
32235637 CATTAGTTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
27 12 0.33
28 4 0.11
29 20 0.56
ACGTcount: A:0.63, C:0.06, G:0.04, T:0.27
Consensus pattern (27 bp):
TAAAAATTAAAAAAAAATGTAAACATA
Found at i:32237387 original size:44 final size:45
Alignment explanation
Indices: 32237273--32237995 Score: 190
Period size: 44 Copynumber: 16.7 Consensus size: 45
32237263 ACTTTAATCT
* * *
32237273 GCTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCC
* *
32237318 GC-CTCATTGCAACTTCA-GGAGGATAAGACTTG-CTTACTT-AGTCC
1 GCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCAT-CTTCAGTCC
* * * *
32237362 GCTCCACTGCAACTTTAGGGAGATAAGACTAG--A--TAC-GATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAG-TCC
** * * * * *
32237403 GCT-TTC-GCCAACTTCAGAGAGATAAGATCTAAG--GT-TTTAATCC
1 GCTCCACTG-CAACTTCAGGGAGATAAGA-CT-TGCCATCTTCAGTCC
* * ** * * *
32237446 GC-CCACTGCAACTTCAGCGG-GATAGGA-TTACCGGCTTTAATCT
1 GCTCCACTGCAACTTCAG-GGAGATAAGACTTGCCATCTTCAGTCC
* * *
32237489 GCTCCACTGCAACTTCAGGGAGATAAGATTTACCATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCC
* *
32237534 GC-CTCACTGTAACTTCA-GGAGGATAAGACTTG-CTTACTT-AGTCC
1 GCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCAT-CTTCAGTCC
* * * * * *
32237578 ACTCCACTGTAACTTCAGGGAGATAAGACTAG--A--TGCAATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCC
** * * * * *
32237619 GCT-CTTTGCAATTTCAGAGAGATAAGATCTAAG--AT-TTTAATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCCATCTTCAGTCC
* * * ** * * *
32237662 GC-CCACTGCAACTTCAGCGAGATAGGA-TTACCGGCTTTAATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCC
* * *
32237705 GCTCCATTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCC
* ** *** *
32237750 GC-CTCACTGCAACTTCA-GAAGGATAAGAC-T-AAAT-GGGA-TCT
1 GCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCATCTTCAGTCC
* * * * * * *
32237791 GCT-CTCTGCAACTTCAGAGAGATAAGATCTAAG--GT-TTTAATCA
1 GCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCCATCTTCAGTCC
* * * ** * * *
32237834 GCT-CACTGCAACTTCAGCGAGATAGGA-TTACCGGCTTTAATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCC
* * ** * *
32237877 GTTCCACTGTAACTTCAGGGAGATAAGTTTTGCCATTTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCC
* *
32237922 G-TCTCACTGCAACTTCA-GGAGGATAAAACTTGCC-TACTT-AGTCT
1 GCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCAT-CTTCAGTCC
*
32237966 GCTCTACTGCAACTTCAGGGAGATAAGACT
1 GCTCCACTGCAACTTCAGGGAGATAAGACT
32237996 CGATCTGTTA
Statistics
Matches: 510, Mismatches: 113, Indels: 111
0.69 0.15 0.15
Matches are distributed among these distances:
39 1 0.00
40 59 0.12
41 24 0.05
42 10 0.02
43 104 0.20
44 168 0.33
45 144 0.28
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (45 bp):
GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCC
Found at i:32237528 original size:216 final size:215
Alignment explanation
Indices: 32237145--32237779 Score: 1002
Period size: 216 Copynumber: 2.9 Consensus size: 215
32237135 GCTTCAATCT
* * *
32237145 ACTCCTCTGCAACTTCAGGGAGATAAGACTAGATATGATCTGCTCTCTGCAACTTCAGAGAGATA
1 ACTCCACTGCAACTTCAGGGAGATAAGACTAGATACGATCTGCTTTC-GCAACTTCAGAGAGATA
* * ** * *
32237210 AGATCCAAGGTTTTAATCCACTTTACTGCAACTTCAG-GAAGATAGGATTATCGACTTTAATCTG
65 AGATCTAAGGTTTTAATCCGC-CCACTGCAACTTCAGCG-AGATAGGATTACCGGCTTTAATCTG
* *
32237274 CTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCATTGCAACTTCAGGAG
128 CTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAG
32237339 GATAAGACTTGCTTACTTAGTCC
193 GATAAGACTTGCTTACTTAGTCC
* *
32237362 GCTCCACTGCAACTTTAGGGAGATAAGACTAGATACGATCTGCTTTCGCCAACTTCAGAGAGATA
1 ACTCCACTGCAACTTCAGGGAGATAAGACTAGATACGATCTGCTTTCG-CAACTTCAGAGAGATA
*
32237427 AGATCTAAGGTTTTAATCCGCCCACTGCAACTTCAGCGGGATAGGATTACCGGCTTTAATCTGCT
65 AGATCTAAGGTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCT
* *
32237492 CCACTGCAACTTCAGGGAGATAAGATTTACCATCTTCAGTCTGCCTCACTGTAACTTCAGGAGGA
130 CCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGA
32237557 TAAGACTTGCTTACTTAGTCC
195 TAAGACTTGCTTACTTAGTCC
* * * * *
32237578 ACTCCACTGTAACTTCAGGGAGATAAGACTAGATGCAATCTGCTCTTTGCAATTTCAGAGAGATA
1 ACTCCACTGCAACTTCAGGGAGATAAGACTAGATACGATCTGCT-TTCGCAACTTCAGAGAGATA
*
32237643 AGATCTAAGATTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCT
65 AGATCTAAGGTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCT
* *
32237708 CCATTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGAAGGA
130 CCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGA
32237773 TAAGACT
195 TAAGACT
32237780 AAATGGGATC
Statistics
Matches: 386, Mismatches: 29, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
216 305 0.79
217 81 0.21
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (215 bp):
ACTCCACTGCAACTTCAGGGAGATAAGACTAGATACGATCTGCTTTCGCAACTTCAGAGAGATAA
GATCTAAGGTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTC
CACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGAT
AAGACTTGCTTACTTAGTCC
Found at i:32237673 original size:172 final size:172
Alignment explanation
Indices: 32237481--32237947 Score: 527
Period size: 172 Copynumber: 2.7 Consensus size: 172
32237471 GATTACCGGC
* * * * * *
32237481 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTACCATCTTCAGTCTGC-CTCACTGTA
1 TTTAATCAGC-CCACTGCAACTTCAGCGAGATAGGATTTACCAGCTTCAATCTGCTC-CACTGCA
* * *
32237545 ACTTCA-GGAGGATAAGACTTG-CTTACTT-AGTC-CACTCCACTGTAACTTCAG-GGAGATAAG
64 ACTTCAGGGA-GATAAGACTTGCCAT-CTTCAGTCGC-CT-CACTGCAACTTCAGAAG-GATAAG
* * *
32237605 ACTAGATGCAATCTGCTCTTTGCAATTTCAGAGAGATAAGATCTAAGAT
124 ACTAAATGCAATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGAT
* * * *
32237654 TTTAATCCGCCCACTGCAACTTCAGCGAGATAGGA-TTACCGGCTTTAATCTGCTCCATTGCAAC
1 TTTAATCAGCCCACTGCAACTTCAGCGAGATAGGATTTACCAGCTTCAATCTGCTCCACTGCAAC
*
32237718 TTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACTAAA
66 TTCAGGGAGATAAGACTTGCCATCTTCAGTC-GCCTCACTGCAACTTCAGAAGGATAAGACTAAA
** *
32237783 TGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGT
130 TGCAATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGAT
* * * * *
32237826 TTTAATCAGCTCACTGCAACTTCAGCGAGATAGGA-TTACCGGCTTTAATCTGTTCCACTGTAAC
1 TTTAATCAGCCCACTGCAACTTCAGCGAGATAGGATTTACCAGCTTCAATCTGCTCCACTGCAAC
** * * *
32237890 TTCAGGGAGATAAGTTTTGCCATTTTCAGTCTGTCTCACTGCAACTTCAGGAGGATAA
66 TTCAGGGAGATAAGACTTGCCATCTTCAGTC-GCCTCACTGCAACTTCAGAAGGATAA
32237948 AACTTGCCTA
Statistics
Matches: 259, Mismatches: 28, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
171 38 0.15
172 208 0.80
173 12 0.05
174 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (172 bp):
TTTAATCAGCCCACTGCAACTTCAGCGAGATAGGATTTACCAGCTTCAATCTGCTCCACTGCAAC
TTCAGGGAGATAAGACTTGCCATCTTCAGTCGCCTCACTGCAACTTCAGAAGGATAAGACTAAAT
GCAATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGAT
Found at i:32237684 original size:83 final size:83
Alignment explanation
Indices: 32237581--32237857 Score: 259
Period size: 83 Copynumber: 3.3 Consensus size: 83
32237571 TTAGTCCACT
* * *
32237581 CCACTGTAACTTCAGGGAGATAAGACTAGATGCAATCTGCTCTTTGCAATTTCAGAGAGATAAGA
1 CCACTGCAACTTCAGCGAGATAAGACTAGATGCAATCTGCTCTTTGCAACTTCAGAGAGATAAGA
*
32237646 TCTAAGATTTTAATCCGC
66 TCTAAGATTTTAATCAGC
* * * ** * *
32237664 CCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCCATTGCAACTTCAGGGAGAT
1 CCACTGCAACTTCAGCGAGATAAGACTA---GATGCAATCTGCT-CTTTGCAACTTCAGAGAGAT
* *** * * *
32237729 AAGATTTGCCATCTTCAGTCTGC
62 AAGATCTAAGAT-TTTAATCAGC
* * ** *
32237752 CTCACTGCAACTTCAG-AAGGATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAA
1 C-CACTGCAACTTCAGCGA-GATAAGACTAGATGCAATCTGCTCTTTGCAACTTCAGAGAGATAA
*
32237816 GATCTAAGGTTTTAATCAGC
64 GATCTAAGATTTTAATCAGC
*
32237836 TCACTGCAACTTCAGCGAGATA
1 CCACTGCAACTTCAGCGAGATA
32237858 GGATTACCGG
Statistics
Matches: 148, Mismatches: 38, Indels: 16
0.73 0.19 0.08
Matches are distributed among these distances:
83 42 0.28
84 8 0.05
85 24 0.16
86 18 0.12
87 25 0.17
88 9 0.06
89 22 0.15
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.27
Consensus pattern (83 bp):
CCACTGCAACTTCAGCGAGATAAGACTAGATGCAATCTGCTCTTTGCAACTTCAGAGAGATAAGA
TCTAAGATTTTAATCAGC
Found at i:32237987 original size:89 final size:87
Alignment explanation
Indices: 32237234--32237993 Score: 287
Period size: 89 Copynumber: 8.8 Consensus size: 87
32237224 AATCCACTTT
* * * * * *
32237234 ACTGCAACTTCAGGAAGATAGGA-TTATCGACTTTAATCTGCTCCACTGTAACTTCAGGGAGATA
1 ACTGCAACTTCAGGAGGATAAGACTT-CCAAC-TTAGTCTGCTCCACTGCAACTTCAGGGAGATA
*
32237298 AGATTTGCCATCTTCAGTCTGCCTC
64 AGATTTGCCATTTTCAGTCTG-CTC
* ** * *
32237323 ATTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCCGCTCCACTGCAACTTTAGGGAGATAA
1 ACTGCAACTTCAGGAGGATAAGACTT-CCAACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAA
* * * *
32237388 GACTAG--A--TAC-GATCTGCTT
65 GATTTGCCATTTTCAG-TCTGCTC
* * * * *
32237407 TC-GCCAACTTCA-GAGAGATAAGA--TCTAAGGTTTTAATCCGC-CCACTGCAACTTCAGCGG-
1 ACTG-CAACTTCAGGAG-GATAAGACTTCCAA---CTTAGTCTGCTCCACTGCAACTTCAG-GGA
* * ** *
32237466 GATAGGA-TTACCGGCTTT-AATCTGCTCC
60 GATAAGATTTGCC-ATTTTCAGTCTGCT-C
* * *
32237494 ACTGCAACTTCAGG-GAGATAAGATTTACCATCTTCAGTCTGC-CTCACTGTAACTTCA-GGAGG
1 ACTGCAACTTCAGGAG-GATAAGACTT-CCAACTT-AGTCTGCTC-CACTGCAACTTCAGGGA-G
* **
32237556 ATAAGACTTG-C-TTACTT-AGTCCACTCC
61 ATAAGATTTGCCATT--TTCAGTCTGCT-C
* * * ** * *
32237583 ACTGTAACTTCAGG-GAGATAAGAC-T--AGA-TGCAATCTGCT-CTTTGCAATTTCAGAGAGAT
1 ACTGCAACTTCAGGAG-GATAAGACTTCCA-ACT-TAGTCTGCTCCACTGCAACTTCAGGGAGAT
* *** * * *
32237642 AAGATCTAAGATTTT-AATCCGCCC
63 AAGATTTGCCATTTTCAGTCTGCTC
* ** * *
32237666 ACTGCAACTTCAGCGA-GATAGGA-TTACCGGCTTTAATCTGCTCCATTGCAACTTCAGGGAGAT
1 ACTGCAACTTCAG-GAGGATAAGACTT-CCAAC-TTAGTCTGCTCCACTGCAACTTCAGGGAGAT
*
32237729 AAGATTTGCCATCTTCAGTCTGCCTC
63 AAGATTTGCCATTTTCAGTCTG-CTC
* * ** * *
32237755 ACTGCAACTTCAGAAGGATAAGAC-T--AAATGGGATCTGCT-CTCTGCAACTTCAGAGAGATAA
1 ACTGCAACTTCAGGAGGATAAGACTTCCAACTTAG-TCTGCTCCACTGCAACTTCAGGGAGATAA
* **** * *
32237816 GATCTAAGGTTTT-AATCAGCTC
65 GATTTGCCATTTTCAGTCTGCTC
* ** * * *
32237838 ACTGCAACTTCAGCGA-GATAGGA-TTACCGGCTTTAATCTGTTCCACTGTAACTTCAGGGAGAT
1 ACTGCAACTTCAG-GAGGATAAGACTT-CCAAC-TTAGTCTGCTCCACTGCAACTTCAGGGAGAT
*
32237901 AAGTTTTGCCATTTTCAGTCTGTCTC
63 AAGATTTGCCATTTTCAGTCTG-CTC
* * *
32237927 ACTGCAACTTCAGGAGGATAAAACTTGCCTACTTAGTCTGCTCTACTGCAACTTCAGGGAGATAA
1 ACTGCAACTTCAGGAGGATAAGACTT-CCAACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAA
32237992 GA
65 GA
32237994 CTCGATCTGT
Statistics
Matches: 490, Mismatches: 123, Indels: 116
0.67 0.17 0.16
Matches are distributed among these distances:
81 3 0.01
82 2 0.00
83 67 0.14
84 58 0.12
85 43 0.09
86 27 0.06
87 80 0.16
88 20 0.04
89 177 0.36
90 13 0.03
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (87 bp):
ACTGCAACTTCAGGAGGATAAGACTTCCAACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAG
ATTTGCCATTTTCAGTCTGCTC
Found at i:32254283 original size:8 final size:8
Alignment explanation
Indices: 32254270--32254298 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
32254260 TTATGAAAAT
32254270 AATATAAA
1 AATATAAA
32254278 AATATAAA
1 AATATAAA
32254286 AATATAAA
1 AATATAAA
32254294 AATAT
1 AATAT
32254299 GTACATGTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (8 bp):
AATATAAA
Found at i:32254517 original size:3 final size:3
Alignment explanation
Indices: 32254509--32254552 Score: 54
Period size: 3 Copynumber: 14.3 Consensus size: 3
32254499 AGTAAATGAT
*
32254509 ATA ATA ATA ATA ATA ATA ATA ATA ATGGA AAA ATA AT- ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA AT--A ATA ATA ATA ATA ATA A
32254553 GGGTGATAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
2 2 0.06
3 32 0.89
5 2 0.06
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:32256436 original size:65 final size:66
Alignment explanation
Indices: 32256242--32256440 Score: 240
Period size: 66 Copynumber: 3.0 Consensus size: 66
32256232 ATGAAAGCTC
** * * * *
32256242 AGACAAGGACCCC-AAAAGGTATTATTAAACCAAGAGGAGGAAATTAGAAAATAGAGTAGAACAA
1 AGACAA-GACCCCAAAAAGGGGTTATTAAATCAAGAGGAGGACATTAAAAAATAGAGAAGAACAA
*
32256306 AG
65 GG
* * * * *
32256308 AGACAAGACCCCCAAAAGGGGTTATTAAATCAAGAGGAGGGCATTAAAAAACAAAGCAGAACAAG
1 AGACAAGACCCCAAAAAGGGGTTATTAAATCAAGAGGAGGACATTAAAAAATAGAGAAGAACAAG
32256373 G
66 G
** *
32256374 AGACAAGACCCCAAAAAGGGGTTATTAAATTGAGAGGAGTACA-TAAAAAATAGAGAAGAACAAG
1 AGACAAGACCCCAAAAAGGGGTTATTAAATCAAGAGGAGGACATTAAAAAATAGAGAAGAACAAG
32256438 G
66 G
32256439 AG
1 AG
32256441 GAGGATGACC
Statistics
Matches: 114, Mismatches: 18, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
65 27 0.24
66 87 0.76
ACGTcount: A:0.50, C:0.13, G:0.24, T:0.13
Consensus pattern (66 bp):
AGACAAGACCCCAAAAAGGGGTTATTAAATCAAGAGGAGGACATTAAAAAATAGAGAAGAACAAG
G
Found at i:32257390 original size:44 final size:44
Alignment explanation
Indices: 32257342--32257790 Score: 151
Period size: 44 Copynumber: 10.2 Consensus size: 44
32257332 TACTGCTTAT
*
32257342 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTTCCTAA
1 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTTCCTAG
* * * * **
32257386 GGAGAT-AGA-AT-TACTGGCTTCAATGTACTCCACTGTAACCTCAG
1 GGAGATAAGATCTGTAAT--CTTCAATCTATTCCACTGTTTCCT-AG
* ** ** * * * ** * *
32257430 GGAGATAAAATCTGCCATCTTTGATCTGCTCCCGCTACTGCTTAG
1 GGAGATAAGATCTGTAATCTTCAATCT-ATTCCACTGTTTCCTAG
*
32257475 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTTCCCAG
1 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTTCCTAG
* * * * * **
32257519 GGAGAT-AGA-AT-TACTGGCCTCAATGTACTCCACTGTGACCTCAG
1 GGAGATAAGATCTGTAAT--CTTCAATCTATTCCACTGTTTCCT-AG
* * ** ** * * ** * *
32257563 GGAGGTAAAATCTGCCATCTTTGATCTGCTCCCACTACTGCTTAG
1 GGAGATAAGATCTGTAATCTTCAATCT-ATTCCACTGTTTCCTAG
* * *
32257608 GGAGATAAGACCTGTAATCTTCAATCTATTCCACTGTTGCCCAG
1 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTTCCTAG
* * * * * **
32257652 GGAGAT-AGA-AT-TACTGGCTTTAATGTACTCCACTGTAACCTCAG
1 GGAGATAAGATCTGTAAT--CTTCAATCTATTCCACTGTTTCCT-AG
* * ** * ** ** ***
32257696 GGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTGGTTAG
1 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTTCCTAG
* * * *
32257740 GGAGATAAGATCTGTAATCTTCAATCTATTCCGCTGCTGCCCAG
1 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTTCCTAG
32257784 GGAGATA
1 GGAGATA
32257791 GAATTACTGG
Statistics
Matches: 273, Mismatches: 112, Indels: 40
0.64 0.26 0.09
Matches are distributed among these distances:
41 9 0.03
42 3 0.01
43 65 0.24
44 100 0.37
45 77 0.28
46 16 0.06
47 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (44 bp):
GGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTTCCTAG
Found at i:32257531 original size:133 final size:133
Alignment explanation
Indices: 32257254--32257990 Score: 1099
Period size: 133 Copynumber: 5.6 Consensus size: 133
32257244 TACCGACCGG
* * *
32257254 GGGA-ATAGAATTACTGGCTTCAATATACTCTACTGCAACCTCAGGGAGGTAAAATCTGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
* *
32257318 TTGATCTGCT-CCACTACTGCTTATGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTTC
66 TTGATCTGCTCCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGC
*
32257382 CTA
131 CCA
* *
32257385 AGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGATAAAATCTGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
* *
32257450 TTGATCTGCTCCCGCTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTTC
66 TTGATCTGCTCCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGC
32257515 CCA
131 CCA
* *
32257518 GGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTGACCTCAGGGAGGTAAAATCTGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
*
32257583 TTGATCTGCTCCCACTACTGCTTAGGGAGATAAGACCTGTAATCTTCAATCTATTCCACTGTTGC
66 TTGATCTGCTCCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGC
32257648 CCA
131 CCA
*
32257651 GGGAGATAGAATTACTGGCTTTAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
* * * *
32257716 TCGATCTGCT-CCACTACTGGTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCGCTGCTGC
66 TTGATCTGCTCCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGC
32257780 CCA
131 CCA
* *
32257783 GGGAGATAGAATTACTGGCTTCAATGTAATCCACTGTAACCTTAGGGAGGTAAAATCTGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
* ** ** ** ** * *
32257848 TTGATCTGTTTCGCTGTCTA-TG--TAGAAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGC
66 TTGATCTG-CTC-C-CACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGT
32257910 TGCCCA
128 TGCCCA
* *
32257916 GGGAAATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
*
32257981 TCGATCTGCT
66 TTGATCTGCT
32257991 TCGCTGTCTA
Statistics
Matches: 556, Mismatches: 44, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
131 3 0.01
132 189 0.34
133 358 0.64
135 3 0.01
136 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (133 bp):
GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
TTGATCTGCTCCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGC
CCA
Found at i:32257567 original size:265 final size:264
Alignment explanation
Indices: 32257254--32257990 Score: 1104
Period size: 265 Copynumber: 2.8 Consensus size: 264
32257244 TACCGACCGG
* * *
32257254 GGGA-ATAGAATTACTGGCTTCAATATACTCTACTGCAACCTCAGGGAGGTAAAATCTGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
*
32257318 TTGATCTGCTCCACTACTGCTTATGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTTCC
66 TTGATCTGCTCCACTACTGCTTATGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCC
* * *
32257383 TAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGATAAAATCTGCCAT
131 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
* * *
32257448 CTTTGATCTGCTCCCGCTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTT
196 CTTCGATCTGCT-CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
*
32257513 TCCCA
260 GCCCA
* *
32257518 GGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTGACCTCAGGGAGGTAAAATCTGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
* *
32257583 TTGATCTGCTCCCACTACTGCTTAGGGAGATAAGACCTGTAATCTTCAATCTATTCCACTGTTGC
66 TTGATCTGCT-CCACTACTGCTTATGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGC
*
32257648 CCAGGGAGATAGAATTACTGGCTTTAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCA
130 CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCA
* *
32257713 TCTTCGATCTGCTCCACTACTGGTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCGCTGCT
195 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
32257778 GCCCA
260 GCCCA
* *
32257783 GGGAGATAGAATTACTGGCTTCAATGTAATCCACTGTAACCTTAGGGAGGTAAAATCTGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
* * * * ** ** * *
32257848 TTGATCTGTTTCGCT-GT-C-TATGTAGAAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGC
66 TTGATCTGCTCCACTACTGCTTATG--G--AGATAAGATCTGTAATCTTCAATCTATTCCACTGT
* *
32257910 TGCCCAGGGAAATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCG
127 TGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTG
32257975 CCATCTTCGATCTGCT
192 CCATCTTCGATCTGCT
32257991 TCGCTGTCTA
Statistics
Matches: 430, Mismatches: 37, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
261 3 0.01
262 1 0.00
263 2 0.00
264 7 0.02
265 293 0.68
266 124 0.29
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (264 bp):
GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
TTGATCTGCTCCACTACTGCTTATGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCC
CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
CCCA
Found at i:32257980 original size:398 final size:396
Alignment explanation
Indices: 32257254--32257990 Score: 1136
Period size: 398 Copynumber: 1.9 Consensus size: 396
32257244 TACCGACCGG
*
32257254 GGGAATAGAATTACTGGCTTCAATATACTCTACTGCAACCTCAGGGAGGTAAAATCTGCCATCTT
1 GGGAATAGAATTACTGGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCTGCCATCTT
* * * * *
32257319 TGATCTGCTCCACTACTGCTTATGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTTCCT
66 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCC
*
32257384 AAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGATAAAATCTGCCATC
131 AAGGAGATAGAATTACTGGCTTCAATGTAATCCACTGTAACCTCAGGGAGATAAAATCTGCCATC
** * ** * *
32257449 TTTGATCTGCTCCCGCTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTT
196 TTTGATCTGCTCCCGCTACTGC-TAGAAAGACAAGATCTAAAATCTTCAATCTATTCCACTGCTG
* * *
32257514 CCCAGGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTGACCTCAGGGAGGTAAAATCTGCC
260 CCCAGGGAAATAGAATTACTGGCCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCC
*
32257579 ATCTTTGATCTGCTCCCACTACTGCTTAGGGAGATAAGACCTGTAATCTTCAATCTATTCCACTG
325 ATCTTCGATCTGCTCCCACTACTGCTTAGGGAGATAAGACCTGTAATCTTCAATCTATTCCACTG
32257644 TTGCCCA
390 TTGCCCA
* * *
32257651 GGGAGATAGAATTACTGGCTTTAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
1 GGGA-ATAGAATTACTGGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCTGCCATCT
* *
32257716 TCGATCTGCTCCACTACTGGTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCGCTGCTGCC
65 TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCC
* * *
32257781 CAGGGAGATAGAATTACTGGCTTCAATGTAATCCACTGTAACCTTAGGGAGGTAAAATCTGCCAT
130 CAAGGAGATAGAATTACTGGCTTCAATGTAATCCACTGTAACCTCAGGGAGATAAAATCTGCCAT
* * * *
32257846 CTTTGATCTGTTTCGCTGTCTA-TG-TAGAAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTG
195 CTTTGATCTG-CTC-CCG-CTACTGCTAGAAAGACAAGATCTAAAATCTTCAATCTATTCCACTG
*
32257909 CTGCCCAGGGAAATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
257 CTGCCCAGGGAAATAGAATTACTGGCCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
32257974 GCCATCTTCGATCTGCT
322 GCCATCTTCGATCTGCT
32257991 TCGCTGTCTA
Statistics
Matches: 305, Mismatches: 31, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
397 4 0.01
398 292 0.96
399 2 0.01
400 4 0.01
401 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (396 bp):
GGGAATAGAATTACTGGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCTGCCATCTT
CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCC
AAGGAGATAGAATTACTGGCTTCAATGTAATCCACTGTAACCTCAGGGAGATAAAATCTGCCATC
TTTGATCTGCTCCCGCTACTGCTAGAAAGACAAGATCTAAAATCTTCAATCTATTCCACTGCTGC
CCAGGGAAATAGAATTACTGGCCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCA
TCTTCGATCTGCTCCCACTACTGCTTAGGGAGATAAGACCTGTAATCTTCAATCTATTCCACTGT
TGCCCA
Found at i:32259307 original size:13 final size:14
Alignment explanation
Indices: 32259289--32259337 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 14
32259279 CCTTAGCCTC
32259289 TCCATTTT-ACTTT
1 TCCATTTTCACTTT
*
32259302 TCCATTTTTCAGTTT
1 TCCA-TTTTCACTTT
32259317 T-CATTTTCACTTT
1 TCCATTTTCACTTT
*
32259330 TTCATTTT
1 TCCATTTT
32259338 TCATCTCGTC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 14 0.45
14 12 0.39
15 5 0.16
ACGTcount: A:0.14, C:0.20, G:0.02, T:0.63
Consensus pattern (14 bp):
TCCATTTTCACTTT
Found at i:32259317 original size:7 final size:7
Alignment explanation
Indices: 32259299--32259341 Score: 52
Period size: 7 Copynumber: 6.1 Consensus size: 7
32259289 TCCATTTTAC
*
32259299 TTTTCCA
1 TTTTTCA
32259306 TTTTTCA
1 TTTTTCA
*
32259313 GTTTTCA
1 TTTTTCA
32259320 -TTTTCA
1 TTTTTCA
32259326 CTTTTTCA
1 -TTTTTCA
32259334 TTTTTCA
1 TTTTTCA
32259341 T
1 T
32259342 CTCGTCATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 6 0.19
7 20 0.62
8 6 0.19
ACGTcount: A:0.14, C:0.19, G:0.02, T:0.65
Consensus pattern (7 bp):
TTTTTCA
Found at i:32259321 original size:14 final size:15
Alignment explanation
Indices: 32259299--32259340 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
32259289 TCCATTTTAC
32259299 TTTTCCATTTTTCA-G
1 TTTT-CATTTTTCACG
*
32259314 TTTTCA-TTTTCACT
1 TTTTCATTTTTCACG
32259328 TTTTCATTTTTCA
1 TTTTCATTTTTCA
32259341 TCTCGTCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 6 0.25
14 8 0.33
15 10 0.42
ACGTcount: A:0.14, C:0.19, G:0.02, T:0.64
Consensus pattern (15 bp):
TTTTCATTTTTCACG
Done.