Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 ID=Chr13-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58321163
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 747533 characters in sequence are not A, C, G, or T
File 119 of 199
Found at i:36193643 original size:21 final size:21
Alignment explanation
Indices: 36193602--36193645 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
36193592 GATTCGCTGC
*
36193602 CTTCAGCTTTAATCCGCTCCA
1 CTTCAGCTTTAATCCACTCCA
* *
36193623 CTTCAGCTTTAATCTATTCCA
1 CTTCAGCTTTAATCCACTCCA
36193644 CT
1 CT
36193646 ACAATGCCAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.34, G:0.07, T:0.39
Consensus pattern (21 bp):
CTTCAGCTTTAATCCACTCCA
Found at i:36193719 original size:123 final size:123
Alignment explanation
Indices: 36193531--36194240 Score: 591
Period size: 123 Copynumber: 5.5 Consensus size: 123
36193521 CTGAAACATT
* * * * * * *
36193531 AGGGAAACAAGATTCGCTACCTTTAGCTTTAATTTATTCTAATGTAACGCCAAGGAGATAGGATT
1 AGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATT
* *
36193596 CGCTGCCTTCAGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTCCACTACAATGCC
66 CGCTGCCTTCAGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTCCACTGCAACGCC
* * ** *
36193654 AGGGTAACAAGATTCGCTA-CTCTTAGCTTTAATCTGTTCTACTTTAACGCCAGGGAAATAAGAT
1 AGGGAAACAAGATTCGCTACCT-TTAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGAT
* * * * * ** * * **
36193718 TCACTGCCCTCAG-TCCTAACGCCAGGGAGATAAGATTTGTTGCCCTCAGCATTAATCTGCTCCA
65 TCGCTGCCTTCAGCT-TTAA-TCC-----GCT-CCA--------CTTCAGCTTTAATCTATTCCA
*
36193782 CTGCAACGAC
114 CTGCAACGCC
* * * *
36193792 AGGGAAACAAGATTCACTACCTTTAGCTTTAATCTGTTCCACTACAACGCCAAAGAGATAAGATT
1 AGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATT
* *
36193857 TGTTGCCTTCAGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTCCACTGCAACGCC
66 CGCTGCCTTCAGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTCCACTGCAACGCC
* * *
36193915 AGGGAAACAAGATTCGCTA-CTATTAGCTTTAATCTATTCTACTGCAACGCCAGGGAAATAAGAT
1 AGGGAAACAAGATTCGCTACCT-TTAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGAT
* ** * * **
36193979 TCACTGCCTTCAGTCTTAACGCCTGGGAGATAAGATTTACTGC-CTTTAGCTTTAATCTGCTCCA
65 TCGCTGCCTTCAG-CTT------T---A-ATCCG-----CTCCACTTCAGCTTTAATCTATTCCA
*
36194043 CTGCAACGTC
114 CTGCAACGCC
* * * * * *
36194053 AGGGAAACAAGATTCGCTAACTTTAGCTTTAATGTGTTCCATTGCAGCGCCAAAGAGATAAGATT
1 AGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATT
* * *
36194118 CGCTGCCTTTAGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTCCACTGGAACGCT
66 CGCTGCCTTCAGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTCCACTGCAACGCC
* * *
36194176 AGGGAAACAAGATTTGCTACCTTTAGCTTTAATCAGTTCCACTGCAACGCCAGGGAAATAAGATT
1 AGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATT
36194241 ATTTTCTTTA
Statistics
Matches: 460, Mismatches: 89, Indels: 76
0.74 0.14 0.12
Matches are distributed among these distances:
122 8 0.02
123 238 0.52
124 5 0.01
127 3 0.01
128 1 0.00
129 2 0.00
130 2 0.00
131 2 0.00
132 2 0.00
133 1 0.00
134 3 0.01
137 5 0.01
138 180 0.39
139 8 0.02
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (123 bp):
AGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATAAGATT
CGCTGCCTTCAGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTCCACTGCAACGCC
Found at i:36193821 original size:261 final size:261
Alignment explanation
Indices: 36193357--36194240 Score: 1254
Period size: 261 Copynumber: 3.4 Consensus size: 261
36193347 TTTCAAACCA
* * * *
36193357 CTCCACTTCAGCTTTAATCTATTCCACTGCAATGCGAGGGAAACAATATTCACTACCTTTAGCTT
1 CTCCACTTCAGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCGCTACCTTTAGCTT
* *
36193422 TAATCTGTTCCACTGCAACGCCAGAGAAATAAGATTTC-CTGCCTTCAGTCTTAACGTCAGGGAG
66 TAATCTGTTCCACTGCAACGCCAGGGAAATAAGA-TTCACTGCCTTCAGTCTTAACGCCAGGGAG
* * * * * * *
36193486 ATAAGATTCGCTGTCTTCATCTTTAATCTACTCCGCTGAAAC-ATTAGGGAAACAAGATTCGCTA
130 ATAAGATTTGCTGCCTTCAGCTTTAATCTGCTCCACTGCAACGA-CAGGGAAACAAGATTCGCTA
* * * * * *
36193550 CCTTTAGCTTTAATTTATTCTAATGTAACGCCAAGGAGATAGGATTCGCTGCCTTCAGCTTTAAT
194 CCTTTAGCTTTAATCTGTTCCAATGCAACGCCAAAGAGATAAGATTCGCTGCCTTCAGCTTTAAT
36193615 CCG
259 CCG
* * *
36193618 CTCCACTTCAGCTTTAATCTATTCCACTACAATGCCAGGGTAACAAGATTCGCTA-CTCTTAGCT
1 CTCCACTTCAGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCGCTACCT-TTAGCT
* ** * *
36193682 TTAATCTGTTCTACTTTAACGCCAGGGAAATAAGATTCACTGCCCTCAGTCCTAACGCCAGGGAG
65 TTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGTCTTAACGCCAGGGAG
* * * *
36193747 ATAAGATTTGTTGCCCTCAGCATTAATCTGCTCCACTGCAACGACAGGGAAACAAGATTCACTAC
130 ATAAGATTTGCTGCCTTCAGCTTTAATCTGCTCCACTGCAACGACAGGGAAACAAGATTCGCTAC
* * * *
36193812 CTTTAGCTTTAATCTGTTCCACTACAACGCCAAAGAGATAAGATTTGTTGCCTTCAGCTTTAATC
195 CTTTAGCTTTAATCTGTTCCAATGCAACGCCAAAGAGATAAGATTCGCTGCCTTCAGCTTTAATC
36193877 CG
260 CG
36193879 CTCCACTTCAGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCGCTA-CTATTAGCT
1 CTCCACTTCAGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCGCTACCT-TTAGCT
* * *
36193943 TTAATCTATTCTACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGTCTTAACGCCTGGGAG
65 TTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGTCTTAACGCCAGGGAG
* * * *
36194008 ATAAGATTTACTGCCTTTAGCTTTAATCTGCTCCACTGCAACGTCAGGGAAACAAGATTCGCTAA
130 ATAAGATTTGCTGCCTTCAGCTTTAATCTGCTCCACTGCAACGACAGGGAAACAAGATTCGCTAC
* * * *
36194073 CTTTAGCTTTAATGTGTTCCATTGCAGCGCCAAAGAGATAAGATTCGCTGCCTTTAGCTTTAATC
195 CTTTAGCTTTAATCTGTTCCAATGCAACGCCAAAGAGATAAGATTCGCTGCCTTCAGCTTTAATC
36194138 CG
260 CG
* * *
36194140 CTCCACTTCAGCTTTAATCTATTCCACTGGAACGCTAGGGAAACAAGATTTGCTACCTTTAGCTT
1 CTCCACTTCAGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCGCTACCTTTAGCTT
*
36194205 TAATCAGTTCCACTGCAACGCCAGGGAAATAAGATT
66 TAATCTGTTCCACTGCAACGCCAGGGAAATAAGATT
36194241 ATTTTCTTTA
Statistics
Matches: 555, Mismatches: 64, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
260 5 0.01
261 547 0.99
262 3 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (261 bp):
CTCCACTTCAGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCGCTACCTTTAGCTT
TAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGTCTTAACGCCAGGGAGA
TAAGATTTGCTGCCTTCAGCTTTAATCTGCTCCACTGCAACGACAGGGAAACAAGATTCGCTACC
TTTAGCTTTAATCTGTTCCAATGCAACGCCAAAGAGATAAGATTCGCTGCCTTCAGCTTTAATCC
G
Found at i:36193827 original size:138 final size:137
Alignment explanation
Indices: 36193623--36194091 Score: 459
Period size: 138 Copynumber: 3.5 Consensus size: 137
36193613 ATCCGCTCCA
* * * * *
36193623 CTTCAGCTTTAATCTATTCCACTACAATGCCAGGGTAACAAGATTCGCTACTCTTAGCTTTAATC
1 CTTCAGCTTTAATCTACTCCACTGCAACGCCAGGGAAACAAGATTCGCTACTATTAGCTTTAATC
**
36193688 TGTTCTACTTTAACGCCAGGGAAATAAGATTCACTGCCCTCAGTCCTAACGCCAGGGAGATAAGA
66 TGTTCTACTACAACGCCAGGGAAATAAGATTCACTG-CCTCAGTCCTAACGCCAGGGAGATAAGA
*
36193753 TTTGTTGC
130 TTTGCTGC
* * * * *
36193761 CCTCAGCATTAATCTGCTCCACTGCAACGACAGGGAAACAAGATTCACTACCT-TTAGCTTTAAT
1 CTTCAGCTTTAATCTACTCCACTGCAACGCCAGGGAAACAAGATTCGCTA-CTATTAGCTTTAAT
* ** * * * ** *
36193825 CTGTTCCACTACAACGCCAAAGAGATAAGATT---TG--T-TG-CCT----TCA--G-CTTTA-A
65 CTGTTCTACTACAACGCCAGGGAAATAAGATTCACTGCCTCAGTCCTAACGCCAGGGAGATAAGA
** *
36193875 TCCGCTCC
130 TTTGCTGC
*
36193883 ACTTCAGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCGCTACTATTAGCTTTAAT
1 -CTTCAGCTTTAATCTACTCCACTGCAACGCCAGGGAAACAAGATTCGCTACTATTAGCTTTAAT
* * * *
36193948 CTATTCTACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGTCTTAACGCCTGGGAGATAAG
65 CTGTTCTACTACAACGCCAGGGAAATAAGATTCACTGCC-TCAGTCCTAACGCCAGGGAGATAAG
*
36194013 ATTTACTGC
129 ATTTGCTGC
* * *
36194022 CTTTAGCTTTAATCTGCTCCACTGCAACGTCAGGGAAACAAGATTCGCTAACT-TTAGCTTTAAT
1 CTTCAGCTTTAATCTACTCCACTGCAACGCCAGGGAAACAAGATTCGCT-ACTATTAGCTTTAAT
*
36194086 GTGTTC
65 CTGTTC
36194092 CATTGCAGCG
Statistics
Matches: 258, Mismatches: 53, Indels: 40
0.74 0.15 0.11
Matches are distributed among these distances:
122 7 0.03
123 83 0.32
124 1 0.00
126 4 0.02
129 1 0.00
130 4 0.02
131 3 0.01
132 1 0.00
135 3 0.01
137 1 0.00
138 140 0.54
139 10 0.04
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (137 bp):
CTTCAGCTTTAATCTACTCCACTGCAACGCCAGGGAAACAAGATTCGCTACTATTAGCTTTAATC
TGTTCTACTACAACGCCAGGGAAATAAGATTCACTGCCTCAGTCCTAACGCCAGGGAGATAAGAT
TTGCTGC
Found at i:36193871 original size:51 final size:51
Alignment explanation
Indices: 36193735--36193885 Score: 167
Period size: 51 Copynumber: 3.0 Consensus size: 51
36193725 CCTCAGTCCT
* * *
36193735 AACGCCAGGGAGATAAGATTTGTTGCCCTCAGCATTAATCTGCTCCACTGC
1 AACGCCAGGGAGATAAGATTTGTTGCCTTCAGCTTTAATCTGCTCCACTAC
* * * *** * * *
36193786 AACGACAGGGAAACAAGATTCACTACCTTTAGCTTTAATCTGTTCCACTAC
1 AACGCCAGGGAGATAAGATTTGTTGCCTTCAGCTTTAATCTGCTCCACTAC
** *
36193837 AACGCCAAAGAGATAAGATTTGTTGCCTTCAGCTTTAATCCGCTCCACT
1 AACGCCAGGGAGATAAGATTTGTTGCCTTCAGCTTTAATCTGCTCCACT
36193886 TCAGCTTTAA
Statistics
Matches: 76, Mismatches: 24, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
51 76 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (51 bp):
AACGCCAGGGAGATAAGATTTGTTGCCTTCAGCTTTAATCTGCTCCACTAC
Found at i:36193904 original size:21 final size:21
Alignment explanation
Indices: 36193863--36193906 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
36193853 GATTTGTTGC
*
36193863 CTTCAGCTTTAATCCGCTCCA
1 CTTCAGCTTTAATCCACTCCA
* *
36193884 CTTCAGCTTTAATCTATTCCA
1 CTTCAGCTTTAATCCACTCCA
36193905 CT
1 CT
36193907 GCAACGCCAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.34, G:0.07, T:0.39
Consensus pattern (21 bp):
CTTCAGCTTTAATCCACTCCA
Found at i:36194632 original size:24 final size:24
Alignment explanation
Indices: 36194601--36194658 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
36194591 CAAATTGCCC
*
36194601 CCACTGTAATCTTCAAGGTTCAAT
1 CCACTGTAATCTTCAAAGTTCAAT
*
36194625 CCAGTGTAATCTTCAAAGTTCAAT
1 CCACTGTAATCTTCAAAGTTCAAT
36194649 CCACTGTAAT
1 CCACTGTAAT
36194659 TTTGGGACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (24 bp):
CCACTGTAATCTTCAAAGTTCAAT
Found at i:36214604 original size:3 final size:3
Alignment explanation
Indices: 36214596--36214689 Score: 152
Period size: 3 Copynumber: 31.3 Consensus size: 3
36214586 AGGTAAATTG
* * * *
36214596 ATA ATA ATA ATA ATA ATA CTA ATA ATA ATA ATA ATA GTA GTA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
36214644 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
36214690 CAAGAGTATT
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 87 1.00
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:36216598 original size:51 final size:51
Alignment explanation
Indices: 36216522--36216621 Score: 164
Period size: 51 Copynumber: 2.0 Consensus size: 51
36216512 GACAATATTC
*
36216522 GCTTTAATCTATTCCACTGCAACGCCAAAGAAACAATATTTGCTACCTTTA
1 GCTTTAATCTATTCCACTGCAACGCCAAAGAAACAAGATTTGCTACCTTTA
** *
36216573 GCTTTAATCTATTCCACTGCAACGCCAGGGAAATAAGATTTGCTACCTT
1 GCTTTAATCTATTCCACTGCAACGCCAAAGAAACAAGATTTGCTACCTT
36216622 CAGTCTTAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (51 bp):
GCTTTAATCTATTCCACTGCAACGCCAAAGAAACAAGATTTGCTACCTTTA
Found at i:36216874 original size:123 final size:124
Alignment explanation
Indices: 36216655--36217395 Score: 530
Period size: 123 Copynumber: 5.8 Consensus size: 124
36216645 GATTCGTTGC
* * * *
36216655 CTTCAGCTTTAATCTACTCCGCTGCAACA-TCAGGGAAACAAGATTTGCTACCTTTACCTTTAAT
1 CTTCAGCTTTAATCTATTCCACTGCAACACTCAGGGAAACAAGATTCGCTACCTTTAGCTTTAAT
* * * * *
36216719 CTATTCTAATGTAACGCCAAGGAGATAGGATTCGCTGCCTTCAGCTTTAATCCACTCCA
66 CTATTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCCACTCCA
* *
36216778 CTTCAGCTTTACTCTATTCCACTGCAACACT-AGAGAAACAAGATTCGCTA-CTCTTAGCTTTAA
1 CTTCAGCTTTAATCTATTCCACTGCAACACTCAGGGAAACAAGATTCGCTACCT-TTAGCTTTAA
* * * ** *
36216841 TCTGTTCTACTGCAACGCCAGGGAAATAAGATTCATTGCCTTCAG-TCTTAACGCCAGGGAGATA
65 TCTATTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCT-TTAA-TCC---------
* *
36216905 AGATTTGCTA
119 --A-CT-CCA
* ** *
36216915 CATTCTGCTTTAATCTGCTCCACTGCAACA-TCAGGGAAATAAGATTCGCTACCTTTAGCTTTAA
1 C-TTCAGCTTTAATCTATTCCACTGCAACACTCAGGGAAACAAGATTCGCTACCTTTAGCTTTAA
* * * * ***
36216979 TCTATTCCACTGCAACGCCAAAGAGATAAGATTCACTGCCTTCAGTTTTAATTTGCTCCA
65 TCTATTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCCACTCCA
* ** * *
36217039 CTTCAGCTTTAATCTATTCCACTACAATGC-CAAGGAAACAAGATTCGCTA-ATCTTAGCTTTAA
1 CTTCAGCTTTAATCTATTCCACTGCAACACTCAGGGAAACAAGATTCGCTACCT-TTAGCTTTAA
* * * * * * * * * *
36217102 TCTGTTCTACTGCGATGGCAGGGAAATAAGATTCGCTGCCTTCAGCCTTAACGCCAAGGAGATAA
65 TCTATTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAA-TCC----A-CT-C
*
36217167 GA
123 CA
* * * * * * *
36217169 TTTGTTGCCTTTAGCTTGAATCTGCTT-CACTGCAAC-GTCAGGGAAATAAGATTTGCTACTTTT
1 --------CTTCAGCTTTAATCT-ATTCCACTGCAACACTCAGGGAAACAAGATTCGCTACCTTT
* * * * * *
36217232 ATCTTTAATCTGTTCCAGTGCAACACCAAAGAAATAAGATTCGCTGCCTTCAGCTTTAATCCGCT
57 AGCTTTAATCTATTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCCACT
36217297 CCA
122 CCA
* * *
36217300 CTTCAGCTCTAATCTATTCCACTGCAACGCT-AGGGAAACAAGATTTGCTACCTTTAGCTTTAAT
1 CTTCAGCTTTAATCTATTCCACTGCAACACTCAGGGAAACAAGATTCGCTACCTTTAGCTTTAAT
* *
36217364 CAATTCCACTGCAACGCCAGGGAAATAAGATT
66 CTATTCCACTGCAACGCCAAGGAAATAAGATT
36217396 ATTGGCTTTA
Statistics
Matches: 474, Mismatches: 101, Indels: 86
0.72 0.15 0.13
Matches are distributed among these distances:
122 6 0.01
123 260 0.55
124 7 0.01
125 1 0.00
129 1 0.00
130 1 0.00
131 1 0.00
132 1 0.00
135 1 0.00
136 1 0.00
137 6 0.01
138 182 0.38
139 6 0.01
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.31
Consensus pattern (124 bp):
CTTCAGCTTTAATCTATTCCACTGCAACACTCAGGGAAACAAGATTCGCTACCTTTAGCTTTAAT
CTATTCCACTGCAACGCCAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCCACTCCA
Found at i:36216976 original size:51 final size:51
Alignment explanation
Indices: 36216894--36217040 Score: 152
Period size: 51 Copynumber: 2.9 Consensus size: 51
36216884 AGTCTTAACG
* *
36216894 CCAGGGAGATAAGATTTGCTACATTCT-GCTTTAATCTGCTCCACTGCAACA
1 CCAGGGAGATAAGATTCGCTACCTT-TAGCTTTAATCTGCTCCACTGCAACA
* * ** *
36216945 TCAGGGAAATAAGATTCGCTACCTTTAGCTTTAATCTATTCCACTGCAACG
1 CCAGGGAGATAAGATTCGCTACCTTTAGCTTTAATCTGCTCCACTGCAACA
** * * * * *
36216996 CCAAAGAGATAAGATTCACTGCCTTCAGTTTTAATTTGCTCCACT
1 CCAGGGAGATAAGATTCGCTACCTTTAGCTTTAATCTGCTCCACT
36217041 TCAGCTTTAA
Statistics
Matches: 77, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
50 1 0.01
51 76 0.99
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (51 bp):
CCAGGGAGATAAGATTCGCTACCTTTAGCTTTAATCTGCTCCACTGCAACA
Found at i:36216998 original size:261 final size:261
Alignment explanation
Indices: 36216522--36217395 Score: 1126
Period size: 261 Copynumber: 3.3 Consensus size: 261
36216512 GACAATATTC
* * * *
36216522 GCTTTAATCTATTCCACTGCAACGCCAAAGAAACAATATTTGCTACCTTTAGCTTTAATCTATTC
1 GCTTTAATCTATTCCACTGCAACGCTAGAGAAACAAGATTCGCTACCTTTAGCTTTAATCTATTC
** * * * * * * *
36216587 CACTGCAACGCCAGGGAAATAAGATTTGCTACCTTCAGTCTTAATGTCAGTGAAACAAGATTCGT
66 CACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGTCTTAACGCCAGGGAGATAAGATTTGT
* * * *
36216652 TGCCTTCAGCTTTAATCTACTCCGCTGCAACATCAGGGAAACAAGATTTGCTACCTTTACCTTTA
131 TGCCTTCTGCTTTAATCTGCTCCACTGCAACATCAGGGAAATAAGATTTGCTACCTTTACCTTTA
* * * * *
36216717 ATCTATTCTAATGTAACGCCAAGGAGATAGGATTCGCTGCCTTCAGCTTTAATCCACTCCACTTC
196 ATCTATTCCAATGCAACGCCAAAGAGATAAGATTCGCTGCCTTCAGCTTTAATCCGCTCCACTTC
36216782 A
261 A
* * *
36216783 GCTTTACTCTATTCCACTGCAACACTAGAGAAACAAGATTCGCTA-CTCTTAGCTTTAATCTGTT
1 GCTTTAATCTATTCCACTGCAACGCTAGAGAAACAAGATTCGCTACCT-TTAGCTTTAATCTATT
* *
36216847 CTACTGCAACGCCAGGGAAATAAGATTCATTGCCTTCAGTCTTAACGCCAGGGAGATAAGATTTG
65 CCACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGTCTTAACGCCAGGGAGATAAGATTTG
* * * * *
36216912 CTACATTCTGCTTTAATCTGCTCCACTGCAACATCAGGGAAATAAGATTCGCTACCTTTAGCTTT
130 TTGCCTTCTGCTTTAATCTGCTCCACTGCAACATCAGGGAAATAAGATTTGCTACCTTTACCTTT
* * * **
36216977 AATCTATTCCACTGCAACGCCAAAGAGATAAGATTCACTGCCTTCAGTTTTAATTTGCTCCACTT
195 AATCTATTCCAATGCAACGCCAAAGAGATAAGATTCGCTGCCTTCAGCTTTAATCCGCTCCACTT
36217042 CA
260 CA
* * * * *
36217044 GCTTTAATCTATTCCACTACAATGCCA-AGGAAACAAGATTCGCTA-ATCTTAGCTTTAATCTGT
1 GCTTTAATCTATTCCACTGCAACGCTAGA-GAAACAAGATTCGCTACCT-TTAGCTTTAATCTAT
* * * * * * *
36217107 TCTACTGCGATGGCAGGGAAATAAGATTCGCTGCCTTCAGCCTTAACGCCAAGGAGATAAGATTT
64 TCCACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGTCTTAACGCCAGGGAGATAAGATTT
* * * * *
36217172 GTTGCCTT-TAGCTTGAATCTGCTTCACTGCAACGTCAGGGAAATAAGATTTGCTACTTTTATCT
129 GTTGCCTTCT-GCTTTAATCTGCTCCACTGCAACATCAGGGAAATAAGATTTGCTACCTTTACCT
* * * *
36217236 TTAATCTGTTCCAGTGCAACACCAAAGAAATAAGATTCGCTGCCTTCAGCTTTAATCCGCTCCAC
193 TTAATCTATTCCAATGCAACGCCAAAGAGATAAGATTCGCTGCCTTCAGCTTTAATCCGCTCCAC
36217301 TTCA
258 TTCA
* * * *
36217305 GCTCTAATCTATTCCACTGCAACGCTAGGGAAACAAGATTTGCTACCTTTAGCTTTAATCAATTC
1 GCTTTAATCTATTCCACTGCAACGCTAGAGAAACAAGATTCGCTACCTTTAGCTTTAATCTATTC
36217370 CACTGCAACGCCAGGGAAATAAGATT
66 CACTGCAACGCCAGGGAAATAAGATT
36217396 ATTGGCTTTA
Statistics
Matches: 528, Mismatches: 80, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
260 4 0.01
261 523 0.99
262 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (261 bp):
GCTTTAATCTATTCCACTGCAACGCTAGAGAAACAAGATTCGCTACCTTTAGCTTTAATCTATTC
CACTGCAACGCCAGGGAAATAAGATTCACTGCCTTCAGTCTTAACGCCAGGGAGATAAGATTTGT
TGCCTTCTGCTTTAATCTGCTCCACTGCAACATCAGGGAAATAAGATTTGCTACCTTTACCTTTA
ATCTATTCCAATGCAACGCCAAAGAGATAAGATTCGCTGCCTTCAGCTTTAATCCGCTCCACTTC
A
Found at i:36217612 original size:24 final size:24
Alignment explanation
Indices: 36217574--36217622 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
36217564 GCCTTTACTA
* *
36217574 TAATCTTCAAGGTTCAATCCACTG
1 TAATCTTAAAAGTTCAATCCACTG
36217598 TAATCTTAAAAGTTCAATCCACTG
1 TAATCTTAAAAGTTCAATCCACTG
36217622 T
1 T
36217623 CATTTTGGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (24 bp):
TAATCTTAAAAGTTCAATCCACTG
Found at i:36228153 original size:3 final size:3
Alignment explanation
Indices: 36228145--36228199 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
36228135 AGGTAAATTG
36228145 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
36228193 ATA ATA A
1 ATA ATA A
36228200 CAGTATTAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:36231961 original size:17 final size:17
Alignment explanation
Indices: 36231939--36231991 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
36231929 TATTCTATTA
36231939 ATTTATTAAGATTTAAT
1 ATTTATTAAGATTTAAT
* *
36231956 ATTTATCAAGA-TAAAT
1 ATTTATTAAGATTTAAT
*
36231972 ATTAGATTAA-ATTTAAT
1 ATT-TATTAAGATTTAAT
36231989 ATT
1 ATT
36231992 AAAGTGATTA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
16 8 0.28
17 21 0.72
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (17 bp):
ATTTATTAAGATTTAAT
Found at i:36234442 original size:3 final size:3
Alignment explanation
Indices: 36234434--36234471 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
36234424 TGATAAAAAA
36234434 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
36234472 ATAATAATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (3 bp):
TAC
Found at i:36234476 original size:3 final size:3
Alignment explanation
Indices: 36234470--36234510 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
36234460 CTACTACTAC
36234470 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
36234511 GTAACAGTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:36235366 original size:19 final size:19
Alignment explanation
Indices: 36235342--36235385 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
36235332 TATTATTTTT
**
36235342 TTTGCTATCATTTGGTTTC
1 TTTGCTATCATTCAGTTTC
*
36235361 TTTGCTCTCATTCAGTTTC
1 TTTGCTATCATTCAGTTTC
36235380 TTTGCT
1 TTTGCT
36235386 GTTTGTTGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.09, C:0.20, G:0.14, T:0.57
Consensus pattern (19 bp):
TTTGCTATCATTCAGTTTC
Found at i:36236112 original size:51 final size:51
Alignment explanation
Indices: 36236013--36236150 Score: 168
Period size: 51 Copynumber: 2.7 Consensus size: 51
36236003 AGTCTTCACG
**
36236013 TCAGGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTACTCCGCTGCAACA
1 TCAGGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTACTCCAATGCAACA
* * * * * **
36236064 TCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTATTCTAATGCAATG
1 TCAGGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTACTCCAATGCAACA
* * *
36236115 CCAAGGAGATAGGATTCGCTGCCTTTAGCTTTAATC
1 TCAGGGAGATAAGATTCGCTGCCTTTAGCTTTAATC
36236151 CGCTCCACTT
Statistics
Matches: 72, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 72 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (51 bp):
TCAGGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTACTCCAATGCAACA
Found at i:36236258 original size:123 final size:122
Alignment explanation
Indices: 36236065--36236755 Score: 501
Period size: 123 Copynumber: 5.4 Consensus size: 122
36236055 GCTGCAACAT
* * * * *
36236065 CAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTATTCTAATGCAATGCCAAGGAGATAGGAT
1 CAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCTACTGCACT-CCAAGGAAATAAGAT
* *
36236130 TCGCTGCCTTTAGCTTTAATCCGCTCCACTTCAGCTTTAATTTATTCCATTGAAATGC
65 TCGCTGCCTTTAGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTCCATTGCAATGC
*
36236188 CAGGGAAACAAGATGCGCTA-CTCTTAGCTTTAATCTGTTCTACTGCCACTCCAAGGAAATAAGA
1 CAGGGAAACAAGATTCGCTACCT-TTAGCTTTAATCTGTTCTACTG-CACTCCAAGGAAATAAGA
* * ** **
36236252 TTCGCTGCCTTCAG-TCTTAATACCAGGGAGATAAGATTTGTTGCCTTCAGCTTTAATCTGCTCC
64 TTCGCTGCCTTTAGCT-TTAAT-CC-----GCT-CCA--------CTTCAGCTTTAATCTATTCC
* * *
36236316 ACTGCAACGT
113 ATTGCAATGC
* * * * *
36236326 CAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGTAGCTCCAAAGAGATAACAT
1 CAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCTACTGCA-CTCCAAGGAAATAAGAT
* * *
36236391 TCGCTGCCTTTAGCTTTAATTCGCTCTACTTCATCTTTAATCTATTCCATTGCAATGC
65 TCGCTGCCTTTAGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTCCATTGCAATGC
* * *
36236449 CAGGGAAACAAGATTCGCTACTTTTAGCTTTAATCTGTTCTACTGCAACGCCAGGGAAATAAGAT
1 CAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCTACTGC-ACTCCAAGGAAATAAGAT
** * * **
36236514 TC-CTG-CTTTCAGTCTTAACGCCAGGGAGATAAGATTTGCTGC-CTTTAGCTTTAATCTGCTCC
65 TCGCTGCCTTT-AG-CTT-------------T-A-ATCCGCTCCACTTCAGCTTTAATCTATTCC
* ***
36236576 ACTGCAACAT
113 ATTGCAATGC
* * ** * *
36236586 CAGGGAAACAAAATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAGGGCCAAAGAGATAAGAT
1 CAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCTACTGCA-CTCCAAGGAAATAAGAT
* * * * * *
36236651 TCGTTGCCTTCACCTTTAATCTGCTCCACTTCAGCTTTAATCTATTCCACTGCAACGC
65 TCGCTGCCTTTAGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTCCATTGCAATGC
* * * * *
36236709 CACGGAAACAAGATTCACTACCTTTAGATTTAATCAGTTCCACTGCA
1 CAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCTACTGCA
36236756 ACGTAAGGGA
Statistics
Matches: 450, Mismatches: 75, Indels: 86
0.74 0.12 0.14
Matches are distributed among these distances:
121 4 0.01
122 15 0.03
123 221 0.49
124 7 0.02
129 2 0.00
130 1 0.00
131 1 0.00
132 2 0.00
136 2 0.00
137 86 0.19
138 103 0.23
139 6 0.01
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (122 bp):
CAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCTACTGCACTCCAAGGAAATAAGATT
CGCTGCCTTTAGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTCCATTGCAATGC
Found at i:36236356 original size:261 final size:261
Alignment explanation
Indices: 36235886--36236771 Score: 1231
Period size: 261 Copynumber: 3.4 Consensus size: 261
36235876 TTGGTGTTTC
* * * *
36235886 AATCCACTCCACTTCAGCTTTAATCTATTCCACTGCAATGCCAAGGAAACAATATTTACTACAT-
1 AATCCGCTCCACTTCAGCTTTAATCTATTCCACTGCAATGCCAGGGAAACAAGATTCACTAC-TC
* * * *
36235950 TTAGCTTTAATTTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGCCTTCAGTCTTCACGTC
65 TTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGTCTTAACGCC
* * *
36236015 AGGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTACTCCGCTGCAACATCAGGGAAACAAGATT
130 AGGGAGATAAGATTTGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACATCAGGGAAACAAGATT
* * * * *
36236080 CGCTACCTTTAGCTTTAATCTATTCTAATGCAATGCCAAGGAGATAGGATTCGCTGCCTTTAGCT
195 CGCTACCTTTAGCTTTAATCTGTTCCACTGCAATGCCAAAGAGATAAGATTCGCTGCCTTTAGCT
36236145 TT
260 TT
* * * * *
36236147 AATCCGCTCCACTTCAGCTTTAATTTATTCCATTGAAATGCCAGGGAAACAAGATGCGCTACTCT
1 AATCCGCTCCACTTCAGCTTTAATCTATTCCACTGCAATGCCAGGGAAACAAGATTCACTACTCT
* * * * **
36236212 TAGCTTTAATCTGTTCTACTGCCACTCCAAGGAAATAAGATTCGCTGCCTTCAGTCTTAATACCA
66 TAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGTCTTAACGCCA
* * *
36236277 GGGAGATAAGATTTGTTGCCTTCAGCTTTAATCTGCTCCACTGCAACGTCAGGGAAACAAGATTC
131 GGGAGATAAGATTTGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACATCAGGGAAACAAGATTC
* * *
36236342 GCTACCTTTAGCTTTAATCTGTTCCACTGTAGCT-CCAAAGAGATAACATTCGCTGCCTTTAGCT
196 GCTACCTTTAGCTTTAATCTGTTCCACTGCA-ATGCCAAAGAGATAAGATTCGCTGCCTTTAGCT
36236406 TT
260 TT
* * * * * *
36236408 AATTCGCTCTACTTCATCTTTAATCTATTCCATTGCAATGCCAGGGAAACAAGATTCGCTACTTT
1 AATCCGCTCCACTTCAGCTTTAATCTATTCCACTGCAATGCCAGGGAAACAAGATTCACTACTCT
* *
36236473 TAGCTTTAATCTGTTCTACTGCAACGCCAGGGAAATAAGATTC-CTGCTTTCAGTCTTAACGCCA
66 TAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGTCTTAACGCCA
*
36236537 GGGAGATAAGATTTGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACATCAGGGAAACAAAATTC
131 GGGAGATAAGATTTGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACATCAGGGAAACAAGATTC
** * * *
36236602 GCTACCTTTAGCTTTAATCTGTTCCACTGCAGGGCCAAAGAGATAAGATTCGTTGCCTTCACCTT
196 GCTACCTTTAGCTTTAATCTGTTCCACTGCAATGCCAAAGAGATAAGATTCGCTGCCTTTAGCTT
36236667 T
261 T
* * *
36236668 AATCTGCTCCACTTCAGCTTTAATCTATTCCACTGCAACGCCACGGAAACAAGATTCACTAC-CT
1 AATCCGCTCCACTTCAGCTTTAATCTATTCCACTGCAATGCCAGGGAAACAAGATTCACTACTC-
* * **
36236732 TTAGATTTAATCAGTTCCACTGCAACGTAAGGGAAATAAG
65 TTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAG
36236772 TTTATTGGAT
Statistics
Matches: 550, Mismatches: 71, Indels: 9
0.87 0.11 0.01
Matches are distributed among these distances:
260 227 0.41
261 322 0.59
262 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (261 bp):
AATCCGCTCCACTTCAGCTTTAATCTATTCCACTGCAATGCCAGGGAAACAAGATTCACTACTCT
TAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGTCTTAACGCCA
GGGAGATAAGATTTGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACATCAGGGAAACAAGATTC
GCTACCTTTAGCTTTAATCTGTTCCACTGCAATGCCAAAGAGATAAGATTCGCTGCCTTTAGCTT
T
Found at i:36236653 original size:51 final size:51
Alignment explanation
Indices: 36236539--36236680 Score: 149
Period size: 51 Copynumber: 2.8 Consensus size: 51
36236529 TAACGCCAGG
* * **
36236539 GAGATAAGATTTGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACATCAGG
1 GAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACACCAAA
* * * * * ***
36236590 GAAACAAAATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAGGGCCAAA
1 GAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACACCAAA
* * *
36236641 GAGATAAGATTCGTTGCCTTCACCTTTAATCTGCTCCACT
1 GAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACT
36236681 TCAGCTTTAA
Statistics
Matches: 71, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 71 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (51 bp):
GAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACACCAAA
Found at i:36236699 original size:21 final size:21
Alignment explanation
Indices: 36236658--36236701 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
36236648 GATTCGTTGC
*
36236658 CTTCACCTTTAATCTGCTCCA
1 CTTCACCTTTAATCTACTCCA
* *
36236679 CTTCAGCTTTAATCTATTCCA
1 CTTCACCTTTAATCTACTCCA
36236700 CT
1 CT
36236702 GCAACGCCAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.34, G:0.05, T:0.41
Consensus pattern (21 bp):
CTTCACCTTTAATCTACTCCA
Found at i:36237168 original size:24 final size:24
Alignment explanation
Indices: 36237135--36237196 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
36237125 CGGATTGCCC
* *
36237135 CCACTATAATCTTCAAGGTTCAAT
1 CCACTGTAATCTTCAAAGTTCAAT
*
36237159 CCACTGTAATCTTTAAAGTTCAAT
1 CCACTGTAATCTTCAAAGTTCAAT
36237183 CCACTGTAAT-TTCA
1 CCACTGTAATCTTCA
36237197 GGACATAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 3 0.09
24 31 0.91
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.35
Consensus pattern (24 bp):
CCACTGTAATCTTCAAAGTTCAAT
Found at i:36245268 original size:18 final size:18
Alignment explanation
Indices: 36245245--36245286 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
36245235 GATCTGATTC
36245245 TAACTCATAATTCACGCT
1 TAACTCATAATTCACGCT
36245263 TAACTCATAATTCACGCT
1 TAACTCATAATTCACGCT
36245281 TAACTC
1 TAACTC
36245287 TTGCCCTAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (18 bp):
TAACTCATAATTCACGCT
Found at i:36249877 original size:21 final size:21
Alignment explanation
Indices: 36249853--36249901 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
36249843 CCACCTTTGC
36249853 TGCCACCGCCACTTCCACCTT
1 TGCCACCGCCACTTCCACCTT
36249874 TGCCACCGCCACTTCCACCTT
1 TGCCACCGCCACTTCCACCTT
36249895 TGCCACC
1 TGCCACC
36249902 ACCCATTTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.14, C:0.53, G:0.10, T:0.22
Consensus pattern (21 bp):
TGCCACCGCCACTTCCACCTT
Found at i:36253214 original size:43 final size:44
Alignment explanation
Indices: 36253152--36253249 Score: 162
Period size: 43 Copynumber: 2.2 Consensus size: 44
36253142 CAGTGTTTAT
**
36253152 ATGTAAGACCATAGTTGGGCTATTGGCATCGATTTGAGATTT-C
1 ATGTAAGACCATAGTTGGGCTATTGGCATCGATACGAGATTTCC
*
36253195 GTGTAAGACCATAGTTGGGCTATTGGCATCGATACGAGATTTCC
1 ATGTAAGACCATAGTTGGGCTATTGGCATCGATACGAGATTTCC
36253239 ATGTAAGACCA
1 ATGTAAGACCA
36253250 CGTCTCTGAC
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 39 0.78
44 11 0.22
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.31
Consensus pattern (44 bp):
ATGTAAGACCATAGTTGGGCTATTGGCATCGATACGAGATTTCC
Found at i:36260971 original size:40 final size:40
Alignment explanation
Indices: 36260927--36261024 Score: 169
Period size: 40 Copynumber: 2.5 Consensus size: 40
36260917 AGGTTCTGTT
36260927 TCTAGCAGGCTTATTGTCAGTGAAATTTTCAGACTTAATG
1 TCTAGCAGGCTTATTGTCAGTGAAATTTTCAGACTTAATG
*
36260967 TCTAGCAGGCTTATTGCCAGTGAAATTTTCAGACTTAATG
1 TCTAGCAGGCTTATTGTCAGTGAAATTTTCAGACTTAATG
* *
36261007 TGTAGCAGGCTTAATGTC
1 TCTAGCAGGCTTATTGTC
36261025 GGTGTCCTAA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (40 bp):
TCTAGCAGGCTTATTGTCAGTGAAATTTTCAGACTTAATG
Found at i:36270188 original size:139 final size:139
Alignment explanation
Indices: 36269938--36270220 Score: 494
Period size: 139 Copynumber: 2.0 Consensus size: 139
36269928 TAGGGAAACG
* * *
36269938 ACAAAAGAGGAATAAAGTCGGAAATTGCATTTATGAAAATGAAACAATAGAGAAAGGAATTGAAC
1 ACAAAAGAGGAATAAAGTCGGAAATTGCAATTATGAAAACGAAACAAAAGAGAAAGGAATTGAAC
* * *
36270003 AGGGGAAAAACGAACGAGGGAGTTTACAGAATTTTTAAAGAGAAAGGAAATGAACATGGGAAATG
66 AGGGGAAAAACGAAAGAAGGAGTTTACAAAATTTTTAAAGAGAAAGGAAATGAACATGGGAAATG
36270068 AACAAGTTT
131 AACAAGTTT
*
36270077 ACAAAAGAGGAATAAAGTTGGAAATTGCAATTATGAAAACGAAACAAAAGAGAAAGGAATTGAAC
1 ACAAAAGAGGAATAAAGTCGGAAATTGCAATTATGAAAACGAAACAAAAGAGAAAGGAATTGAAC
*
36270142 AGGGGAAAAACGAAAGAAGGAGTTTACAAAATTTTTAAAGAGAAAGGAAATGAGCATGGGAAATG
66 AGGGGAAAAACGAAAGAAGGAGTTTACAAAATTTTTAAAGAGAAAGGAAATGAACATGGGAAATG
36270207 AACAAGTTT
131 AACAAGTTT
36270216 ACAAA
1 ACAAA
36270221 TATATAGAGT
Statistics
Matches: 136, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
139 136 1.00
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.18
Consensus pattern (139 bp):
ACAAAAGAGGAATAAAGTCGGAAATTGCAATTATGAAAACGAAACAAAAGAGAAAGGAATTGAAC
AGGGGAAAAACGAAAGAAGGAGTTTACAAAATTTTTAAAGAGAAAGGAAATGAACATGGGAAATG
AACAAGTTT
Found at i:36275206 original size:3 final size:3
Alignment explanation
Indices: 36275200--36275240 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
36275190 CTACTACTAC
* *
36275200 TAA TAA TAA TAG TAG TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
36275241 GTATTAAACT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:36276087 original size:19 final size:19
Alignment explanation
Indices: 36276063--36276104 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
36276053 TGTTATTTTT
*
36276063 TTTGCTATCATTTGGTTTC
1 TTTGCTATCATTCGGTTTC
* *
36276082 TTTGCTCTTATTCGGTTTC
1 TTTGCTATCATTCGGTTTC
36276101 TTTG
1 TTTG
36276105 TTGTTTGTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.07, C:0.17, G:0.17, T:0.60
Consensus pattern (19 bp):
TTTGCTATCATTCGGTTTC
Found at i:36276601 original size:51 final size:51
Alignment explanation
Indices: 36276528--36276628 Score: 141
Period size: 51 Copynumber: 2.0 Consensus size: 51
36276518 GCTCTACTTC
* *
36276528 AGCTTTAATCTATTCCATTGCAATGCCAGGGAAACAAGATTCGCTACTTTT
1 AGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCGCTACTTTT
* * *
36276579 AGCTTTAATC-AGTTCTACTGCAACGCCAGGGAAATAAGATTCGCTGCTTT
1 AGCTTTAATCTA-TTCCACTGCAACGCCAGGGAAACAAGATTCGCTACTTT
36276629 CAGTCTTAAC
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
50 1 0.02
51 43 0.98
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (51 bp):
AGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCGCTACTTTT
Found at i:36276754 original size:51 final size:51
Alignment explanation
Indices: 36276645--36276786 Score: 158
Period size: 51 Copynumber: 2.8 Consensus size: 51
36276635 TAACGCTAGG
* * * * *
36276645 GAGATAAGATTTGATGCCTTTAGCTTTAATCTACTCCACTGCAACATCAAG
1 GAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACACCAAA
* * * ****
36276696 GAAATAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCCGGGCCAAA
1 GAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACACCAAA
* *
36276747 GAGATAAGATTCACTGCCTTCAGCTTTAATCTGCTCCACT
1 GAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACT
36276787 TCAGCTTTAA
Statistics
Matches: 74, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 74 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (51 bp):
GAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACACCAAA
Found at i:36276805 original size:21 final size:21
Alignment explanation
Indices: 36276764--36276807 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
36276754 GATTCACTGC
*
36276764 CTTCAGCTTTAATCTGCTCCA
1 CTTCAGCTTTAATCTACTCCA
*
36276785 CTTCAGCTTTAATCTATTCCA
1 CTTCAGCTTTAATCTACTCCA
36276806 CT
1 CT
36276808 GCAATGTCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.32, G:0.07, T:0.41
Consensus pattern (21 bp):
CTTCAGCTTTAATCTACTCCA
Found at i:36276813 original size:261 final size:260
Alignment explanation
Indices: 36276243--36276877 Score: 930
Period size: 261 Copynumber: 2.4 Consensus size: 260
36276233 CTGGACTTGA
* * * * *
36276243 CTTCAGATTTAATCCGCTCCACTTCAGCTTTAATTTATTCCATTGAAACGCCAGGGAAACAAGAT
1 CTTCAGCTTTAATCTGCTCCACTTCAGCTTTAATCTATTCCATTGCAATGCCAGGGAAACAAGAT
* * * *
36276308 TCGCTACTCTTAGCTTTAATCTGTTCTACTGCCACGCCAAGGAAATAAGATTCGCTGCCATCAGT
66 TCGCTACTTTTAGCTTTAATCAGTTCTACTGCAACGCCAGGGAAATAAGATTCGCTGCCATCAGT
* * * *
36276373 CTTAATACCAGGGAGATAAGATTTGTTGCCTTCAGCTTTAATCTCTCCACTGCAACGTCAGGGAA
131 CTTAACACCAGGGAGATAAGATTTGATGCCTTCAGCTTTAATCTCTCCACTGCAACATCAAGGAA
* * *
36276438 ACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTATAAATCCAAAGAGATAATATTCACTGC
196 ACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTACAAAGCCAAAGAGATAAGATTCACTGC
* *
36276503 CTTTAGCTTTAAT-TCGCTCTACTTCAGCTTTAATCTATTCCATTGCAATGCCAGGGAAACAAGA
1 CTTCAGCTTTAATCT-GCTCCACTTCAGCTTTAATCTATTCCATTGCAATGCCAGGGAAACAAGA
**
36276567 TTCGCTACTTTTAGCTTTAATCAGTTCTACTGCAACGCCAGGGAAATAAGATTCGCTGCTTTCAG
65 TTCGCTACTTTTAGCTTTAATCAGTTCTACTGCAACGCCAGGGAAATAAGATTCGCTGCCATCAG
* * *
36276632 TCTTAACGCTAGGGAGATAAGATTTGATGCCTTTAGCTTTAATCTACTCCACTGCAACATCAAGG
130 TCTTAACACCAGGGAGATAAGATTTGATGCCTTCAGCTTTAATCT-CTCCACTGCAACATCAAGG
* * ***
36276697 AAATAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCCGGGCCAAAGAGATAAGATTCACT
194 AAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTACAAAGCCAAAGAGATAAGATTCACT
36276762 GC
259 GC
* *
36276764 CTTCAGCTTTAATCTGCTCCACTTCAGCTTTAATCTATTCCACTGCAATGTCAGGGAAACAAGAT
1 CTTCAGCTTTAATCTGCTCCACTTCAGCTTTAATCTATTCCATTGCAATGCCAGGGAAACAAGAT
* * * * *
36276829 TCACTACCTTTAGCTTTAATCAGTTCCACTACAACGCAAGGGAAATAAG
66 TCGCTACTTTTAGCTTTAATCAGTTCTACTGCAACGCCAGGGAAATAAG
36276878 TTTATTGGAC
Statistics
Matches: 335, Mismatches: 37, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
260 155 0.46
261 179 0.53
262 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (260 bp):
CTTCAGCTTTAATCTGCTCCACTTCAGCTTTAATCTATTCCATTGCAATGCCAGGGAAACAAGAT
TCGCTACTTTTAGCTTTAATCAGTTCTACTGCAACGCCAGGGAAATAAGATTCGCTGCCATCAGT
CTTAACACCAGGGAGATAAGATTTGATGCCTTCAGCTTTAATCTCTCCACTGCAACATCAAGGAA
ACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTACAAAGCCAAAGAGATAAGATTCACTGC
Found at i:36277275 original size:24 final size:24
Alignment explanation
Indices: 36277243--36277298 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
36277233 GATTGCCCCT
*
36277243 ACTGTAATCTTCAAGGTTCAATCC
1 ACTGTAATCTTCAAAGTTCAATCC
*
36277267 ACTGTAATCTTTAAAGTTCAATCC
1 ACTGTAATCTTCAAAGTTCAATCC
36277291 ACTGTAAT
1 ACTGTAAT
36277299 TTCGGGACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (24 bp):
ACTGTAATCTTCAAAGTTCAATCC
Found at i:36278313 original size:45 final size:46
Alignment explanation
Indices: 36278264--36278353 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
36278254 TTTTTTATAT
*
36278264 TTTTTTATT-ACTCAAAG-CGCCCCTTGTGGGTTTTCACCTTGGTCG
1 TTTTTTATTAACT-AAAGCCGCCCCTTGCGGGTTTTCACCTTGGTCG
* * * *
36278309 TTTTTTTTTAACTTAAGCCGCCCTTTGCGGGTTTTCACTTTGGTC
1 TTTTTTATTAACTAAAGCCGCCCCTTGCGGGTTTTCACCTTGGTC
36278354 CCTTTCTCTT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
45 11 0.29
46 27 0.71
ACGTcount: A:0.12, C:0.23, G:0.19, T:0.46
Consensus pattern (46 bp):
TTTTTTATTAACTAAAGCCGCCCCTTGCGGGTTTTCACCTTGGTCG
Found at i:36294102 original size:43 final size:44
Alignment explanation
Indices: 36294040--36294138 Score: 146
Period size: 43 Copynumber: 2.3 Consensus size: 44
36294030 AAGCGTTTAT
* **
36294040 ATGTAAGACCATAGTTGGGCTATTGGCATCGATTTGAGATTT-C
1 ATGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTTCC
* *
36294083 GTGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGCTTTCC
1 ATGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTTCC
36294127 ATGTAAGACCAT
1 ATGTAAGACCAT
36294139 GTCTCTGACA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
43 37 0.76
44 12 0.24
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (44 bp):
ATGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTTCC
Found at i:36298111 original size:57 final size:57
Alignment explanation
Indices: 36298037--36298145 Score: 141
Period size: 57 Copynumber: 1.9 Consensus size: 57
36298027 TGGTATCCAT
* *
36298037 CACCAGTACATAGTACCTGAA-AATGTAATCACCAGC-ACTGAGTGCATGAAACTGTAA
1 CACCAGTACAAAATACCT-AATAATGTAATCACCAGCAACT-AGTGCATGAAACTGTAA
* * *
36298094 CACCAGTACAAAATACCTAATACTGTAATCACCGGCAACTAGTGCTTGAAAC
1 CACCAGTACAAAATACCTAATAATGTAATCACCAGCAACTAGTGCATGAAAC
36298146 ACACTAATGA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
56 2 0.04
57 40 0.89
58 3 0.07
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.21
Consensus pattern (57 bp):
CACCAGTACAAAATACCTAATAATGTAATCACCAGCAACTAGTGCATGAAACTGTAA
Found at i:36302048 original size:40 final size:40
Alignment explanation
Indices: 36302004--36302098 Score: 154
Period size: 40 Copynumber: 2.4 Consensus size: 40
36301994 TTCTGTTTCT
36302004 AGCAGGCTTATTGTCAGTGAAATTTTCAGACTTAATGTCA
1 AGCAGGCTTATTGTCAGTGAAATTTTCAGACTTAATGTCA
* **
36302044 AGCAGGCTTATTGCCAGTGAAATTTTCAGACTTAATGTGT
1 AGCAGGCTTATTGTCAGTGAAATTTTCAGACTTAATGTCA
*
36302084 AGCAGGCTTAATGTC
1 AGCAGGCTTATTGTC
36302099 GGTGTCCTAA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (40 bp):
AGCAGGCTTATTGTCAGTGAAATTTTCAGACTTAATGTCA
Found at i:36312892 original size:17 final size:17
Alignment explanation
Indices: 36312870--36312922 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
36312860 TATTCCATTA
36312870 ATTTATTAAGATTTAAT
1 ATTTATTAAGATTTAAT
* *
36312887 ATTTATCAAGA-TAAAT
1 ATTTATTAAGATTTAAT
*
36312903 ATTAGATTAA-ATTTAAT
1 ATT-TATTAAGATTTAAT
36312920 ATT
1 ATT
36312923 AGAGTGATTA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
16 8 0.28
17 21 0.72
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (17 bp):
ATTTATTAAGATTTAAT
Found at i:36315397 original size:3 final size:3
Alignment explanation
Indices: 36315391--36315425 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
36315381 CTAATAATAA
36315391 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TA
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TA
36315426 ATAATAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
TAG
Found at i:36315430 original size:3 final size:3
Alignment explanation
Indices: 36315424--36315480 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
36315414 GTAGTAGTAG
36315424 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
36315472 TAA TAA TAA
1 TAA TAA TAA
36315481 CAGTATTAAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:36316562 original size:51 final size:51
Alignment explanation
Indices: 36316478--36316578 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 51
36316468 ACTCCACTTC
* * *
36316478 AGCTTTAATCTATTCCACTGCAATGCCAAGGAAACAATATTTGCTACCTTT
1 AGCTTTAATCCATTCCACTGCAACGCCAAGGAAACAAGATTTGCTACCTTT
* * * *
36316529 AGCTTTAATCCGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGCCTT
1 AGCTTTAATCCATTCCACTGCAACGCCAAGGAAACAAGATTTGCTACCTT
36316579 CAGTCTTAAC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.31
Consensus pattern (51 bp):
AGCTTTAATCCATTCCACTGCAACGCCAAGGAAACAAGATTTGCTACCTTT
Found at i:36316689 original size:51 final size:51
Alignment explanation
Indices: 36316590--36316727 Score: 159
Period size: 51 Copynumber: 2.7 Consensus size: 51
36316580 AGTCTTAACG
* **
36316590 TCAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTACTATGCTGCAACA
1 TCAGGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTACTATAATGCAACA
* * * * * * *
36316641 TCAGGGAAACAAGATTCGTTACCTTTAGCTTTAATCTATTCTAATGCAACG
1 TCAGGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTACTATAATGCAACA
* * *
36316692 CCAAGGAGATAGGATTCGCTGCCTTTAGCTTTAATC
1 TCAGGGAGATAAGATTCGCTGCCTTTAGCTTTAATC
36316728 CGCTCCACTT
Statistics
Matches: 70, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 70 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (51 bp):
TCAGGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTACTATAATGCAACA
Found at i:36317073 original size:51 final size:51
Alignment explanation
Indices: 36317000--36317100 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 51
36316990 NCTCTACTTC
* *
36317000 AGCTTTAATCTATTCCATTGCAATGCCAGGGAAACAAGATTCGCTACTTTT
1 AGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCGCTACTTTT
* * * * *
36317051 AGCTTTCATCTGTTCTACTGCAACGCCAGGGAAATAAGATTCGCTGCTTT
1 AGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCGCTACTTT
36317101 CAGTCTTAAC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.33
Consensus pattern (51 bp):
AGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCGCTACTTTT
Found at i:36317170 original size:87 final size:87
Alignment explanation
Indices: 36317024--36317182 Score: 210
Period size: 87 Copynumber: 1.8 Consensus size: 87
36317014 CCATTGCAAT
* * * * * *
36317024 GCCAGGGAAACAAGATTCGCTACTTTTAGCTTTCATCTGTTCTACTGCAACGCCAGGGAAATAAG
1 GCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGCTCCACTGCAACACCAGGGAAACAAG
36317089 ATTCGCTGCTTTCAGTCTTAAC
66 ATTCGCTGCTTTCAGTCTTAAC
* * * * * *
36317111 GCCAGGGAGATAAGATTTGCTGCCTTTAGCTTTAATTTGCTCCACTGCAACATCAGGGAAACAAG
1 GCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGCTCCACTGCAACACCAGGGAAACAAG
36317176 ATTCGCT
66 ATTCGCT
36317183 ACCTTTAGCT
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
87 60 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (87 bp):
GCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGCTCCACTGCAACACCAGGGAAACAAG
ATTCGCTGCTTTCAGTCTTAAC
Found at i:36317189 original size:51 final size:51
Alignment explanation
Indices: 36317112--36317258 Score: 186
Period size: 51 Copynumber: 2.9 Consensus size: 51
36317102 AGTCTTAACG
* *
36317112 CCAGGGAGATAAGATTTGCTGCCTTTAGCTTTAATTTGCTCCACTGCAACA
1 CCAGGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACA
* * * * * **
36317163 TCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAAGG
1 CCAGGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACA
** *
36317214 CCAAAGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCACT
1 CCAGGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACT
36317259 TCAGCTTTAA
Statistics
Matches: 79, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 79 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (51 bp):
CCAGGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACA
Found at i:36317277 original size:21 final size:21
Alignment explanation
Indices: 36317236--36317279 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
36317226 GATTCGCTGC
*
36317236 CTTCAGCTTTAATCTGCTCCA
1 CTTCAGCTTTAATCTACTCCA
*
36317257 CTTCAGCTTTAATCTATTCCA
1 CTTCAGCTTTAATCTACTCCA
36317278 CT
1 CT
36317280 GCAATGCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.32, G:0.07, T:0.41
Consensus pattern (21 bp):
CTTCAGCTTTAATCTACTCCA
Found at i:36317745 original size:24 final size:24
Alignment explanation
Indices: 36317713--36317770 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
36317703 CAGATTGCCC
*
36317713 CCACTGTAATCTTCAAGGTTCAAT
1 CCACTGTAATCTTCAAAGTTCAAT
*
36317737 CCACTGTAATCTTTAAAGTTCAAT
1 CCACTGTAATCTTCAAAGTTCAAT
*
36317761 CCACTATAAT
1 CCACTGTAAT
36317771 TTCGGGACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.34
Consensus pattern (24 bp):
CCACTGTAATCTTCAAAGTTCAAT
Found at i:36334849 original size:43 final size:44
Alignment explanation
Indices: 36334787--36334885 Score: 146
Period size: 43 Copynumber: 2.3 Consensus size: 44
36334777 CAGTGTTTAT
* **
36334787 ATGTAAGACCATAGTTGGGCTATTGGCATCGATTTGAGATTT-C
1 ATGTAAGACCATAGTTGGGCTATTGGCATAGATACGAGATTTCC
* *
36334830 GTGTAAGACCATAGTTGGGCTATTGGTATAGATACGAGATTTCC
1 ATGTAAGACCATAGTTGGGCTATTGGCATAGATACGAGATTTCC
36334874 ATGTAAGACCAT
1 ATGTAAGACCAT
36334886 GTCTGTGACA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
43 37 0.76
44 12 0.24
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.32
Consensus pattern (44 bp):
ATGTAAGACCATAGTTGGGCTATTGGCATAGATACGAGATTTCC
Found at i:36342757 original size:40 final size:40
Alignment explanation
Indices: 36342667--36342764 Score: 160
Period size: 40 Copynumber: 2.5 Consensus size: 40
36342657 AGGTTCTGTT
* *
36342667 TCTAGCAGGCATATTGTCAGTGAAATTTTCAGACTTAATG
1 TCTAGCAGGCTTATTGCCAGTGAAATTTTCAGACTTAATG
36342707 TCTAGCAGGCTTATTGCCAGTGAAATTTTCAGACTTAATG
1 TCTAGCAGGCTTATTGCCAGTGAAATTTTCAGACTTAATG
* *
36342747 TGTAGCAGGCTTAATGCC
1 TCTAGCAGGCTTATTGCC
36342765 GGTGTCCTAA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (40 bp):
TCTAGCAGGCTTATTGCCAGTGAAATTTTCAGACTTAATG
Found at i:36354367 original size:19 final size:19
Alignment explanation
Indices: 36354343--36354384 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
36354333 TCTATTTTTT
* * *
36354343 TTTGCTGTCATTTGGTTTG
1 TTTGCTCTCATTCGGTTTC
36354362 TTTGCTCTCATTCGGTTTC
1 TTTGCTCTCATTCGGTTTC
36354381 TTTG
1 TTTG
36354385 TTGTTTGTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.05, C:0.17, G:0.21, T:0.57
Consensus pattern (19 bp):
TTTGCTCTCATTCGGTTTC
Found at i:36355113 original size:51 final size:51
Alignment explanation
Indices: 36355010--36355151 Score: 142
Period size: 51 Copynumber: 2.8 Consensus size: 51
36355000 CTTCAGTCTT
* * * **
36355010 AACATCAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTACTCCGCTGC
1 AACATCAGGGAAACAAGATTCGCTACCTTCAGCTTTAATCTACTCCAATGC
* * *
36355061 AACATCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTATTCTAATGC
1 AACATCAGGGAAACAAGATTCGCTACCTTCAGCTTTAATCTACTCCAATGC
* * * * * *
36355112 AAC-GCTAAGGAGATAGGATTCGCTGCCTTCAGCTTTAATC
1 AACATC-AGGGAAACAAGATTCGCTACCTTCAGCTTTAATC
36355152 CGCTCCACTT
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
50 1 0.01
51 74 0.99
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (51 bp):
AACATCAGGGAAACAAGATTCGCTACCTTCAGCTTTAATCTACTCCAATGC
Found at i:36355255 original size:123 final size:122
Alignment explanation
Indices: 36355036--36355765 Score: 552
Period size: 123 Copynumber: 5.7 Consensus size: 122
36355026 GATTCGCTGC
* * **
36355036 CTTCAGCTTTAATCTACTCCGCTGCAACATCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATC
1 CTTCAGCTTTAATCTATTCC-ATGCAACGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATC
* * * * *
36355101 TATTCTAATGCAACGCTAAGGAGATAGGATTCGCTGCCTTCAGCTTTAATCCGCTCCA
65 TGTTCTACTACAACGCCAAGGAGATAAGATTCGCTGCCTTCAGCTTTAATCCGCTCCA
* *
36355159 CTTCAGCTTTAATTTATTCCATAGAAACGCCAGGGAAACAAGATTCGCTA-CTCTTAGCTTTAAT
1 CTTCAGCTTTAATCTATTCCAT-GCAACGCCAGGGAAACAAGATTCGCTACCT-TTAGCTTTAAT
* * * * *
36355223 CTGTTCTACTACCACACCAAGGAAATAAGATTCGCTGCCTTCAG-TCTTAATACCAGGGAGATAA
64 CTGTTCTACTACAACGCCAAGGAGATAAGATTCGCTGCCTTCAGCT-TTAAT-CC-----GCT-C
*
36355287 GA
121 CA
** *
36355289 TTTGTTGCCTTCAGCTTTAATCTGCTCCACTGCAACGTCAGGGAAACAAGATTCGCTACCTTTAG
1 --------CTTCAGCTTTAATCTATTCCA-TGCAACGCCAGGGAAACAAGATTCGCTACCTTTAG
* * ** * * * * * *
36355354 CTTTAATCTGTTCCACTATAAATCCAAAGAGATAATATTCACTGCCTTTAGCTTTAATTCGCTCT
57 CTTTAATCTGTTCTACTACAACGCCAAGGAGATAAGATTCGCTGCCTTCAGCTTTAATCCGCTCC
36355419 A
122 A
* * **
36355420 CTTCAGCTTTAATCTATTCCATTGTAATGCCAGGGAAACAAGATTCGCTAATTTTAGCTTTAATC
1 CTTCAGCTTTAATCTATTCCA-TGCAACGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATC
* * * *
36355485 TGTTCTACTGCAACGCCAGGGAAATAAGATTCGCTGCTTTCAG-TCTTAACGTCACGGAGATAAG
65 TGTTCTACTACAACGCCAAGGAGATAAGATTCGCTGCCTTCAGCT-TTAA--TC-C---------
*
36355549 ATTTGCTGC-
117 ----GCTCCA
* * ** ** * *
36355558 CTTTAGCTTTATTCTGCTCCACTGCAACATCAGAGAAACAAGATTCACTACCTTTAGCTTTAATC
1 CTTCAGCTTTAATCTATTCCA-TGCAACGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATC
* * ** * *
36355623 TGTTCCACTGCAGGGCCAAAGAGATAAGATTCGCTGCCTTCAGCTTTAATCAGCTCCA
65 TGTTCTACTACAACGCCAAGGAGATAAGATTCGCTGCCTTCAGCTTTAATCCGCTCCA
*
36355681 CTTCAGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCACTACCTTTAGCTTTAATC
1 CTTCAGCTTTAATCTATTCCA-TGCAACGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATC
* * *
36355746 AGTTCCACTGCAACG-CAAGG
65 TGTTCTACTACAACGCCAAGG
36355766 GAAATAAGTT
Statistics
Matches: 475, Mismatches: 92, Indels: 81
0.73 0.14 0.12
Matches are distributed among these distances:
122 13 0.03
123 256 0.54
124 2 0.00
125 1 0.00
126 1 0.00
129 2 0.00
130 1 0.00
131 1 0.00
132 2 0.00
136 2 0.00
137 1 0.00
138 185 0.39
139 8 0.02
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (122 bp):
CTTCAGCTTTAATCTATTCCATGCAACGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCT
GTTCTACTACAACGCCAAGGAGATAAGATTCGCTGCCTTCAGCTTTAATCCGCTCCA
Found at i:36355357 original size:261 final size:260
Alignment explanation
Indices: 36354893--36355773 Score: 1215
Period size: 261 Copynumber: 3.4 Consensus size: 260
36354883 TTTCAGTCCA
* * * **
36354893 CTCCACTTTAGCTTTAATCTATTCCACTGCAACGCCAAGGAAACAATATTTTCTACCTTGAGCTT
1 CTCCACTTCAGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCGCTACCTT-AGCTT
* * *
36354958 TAATTTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGCCTTCAGTCTTAACATCAGGGAGA
65 TAATCTGTTCTACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGTCTTAACATCAGGGAGA
* * *
36355023 TAAGATTCGCTGCCTTCAGCTTTAATCTACTCCGCTGCAACATCAGGGAAACAAGATTCGCTACC
130 TAAGATTTGCTGCCTTCAGCTTTAATCTGCTCCACTGCAACATCAGGGAAACAAGATTCGCTACC
* * * * * * *
36355088 TTTAGCTTTAATCTATTCTAATGCAACGCTAAGGAGATAGGATTCGCTGCCTTCAGCTTTAATCC
195 TTTAGCTTTAATCTGTTCCACTGCAAAGCCAAAGAGATAAGATTCGCTGCCTTCAGCTTTAATCC
36355153 G
260 G
* *
36355154 CTCCACTTCAGCTTTAATTTATTCCA-TAGAAACGCCAGGGAAACAAGATTCGCTACTCTTAGCT
1 CTCCACTTCAGCTTTAATCTATTCCACT-GCAACGCCAGGGAAACAAGATTCGCTAC-CTTAGCT
* * * * * *
36355218 TTAATCTGTTCTACTACCACACCAAGGAAATAAGATTCGCTGCCTTCAGTCTTAATACCAGGGAG
64 TTAATCTGTTCTACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGTCTTAACATCAGGGAG
* *
36355283 ATAAGATTTGTTGCCTTCAGCTTTAATCTGCTCCACTGCAACGTCAGGGAAACAAGATTCGCTAC
129 ATAAGATTTGCTGCCTTCAGCTTTAATCTGCTCCACTGCAACATCAGGGAAACAAGATTCGCTAC
** * * * * *
36355348 CTTTAGCTTTAATCTGTTCCACTATAAATCCAAAGAGATAATATTCACTGCCTTTAGCTTTAATT
194 CTTTAGCTTTAATCTGTTCCACTGCAAAGCCAAAGAGATAAGATTCGCTGCCTTCAGCTTTAATC
36355413 CG
259 CG
* * * * **
36355415 CTCTACTTCAGCTTTAATCTATTCCATTGTAATGCCAGGGAAACAAGATTCGCTAATTTTAGCTT
1 CTCCACTTCAGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCGCT-ACCTTAGCTT
* * *
36355480 TAATCTGTTCTACTGCAACGCCAGGGAAATAAGATTCGCTGCTTTCAGTCTTAACGTCACGGAGA
65 TAATCTGTTCTACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGTCTTAACATCAGGGAGA
* * * *
36355545 TAAGATTTGCTGCCTTTAGCTTTATTCTGCTCCACTGCAACATCAGAGAAACAAGATTCACTACC
130 TAAGATTTGCTGCCTTCAGCTTTAATCTGCTCCACTGCAACATCAGGGAAACAAGATTCGCTACC
** *
36355610 TTTAGCTTTAATCTGTTCCACTGCAGGGCCAAAGAGATAAGATTCGCTGCCTTCAGCTTTAATCA
195 TTTAGCTTTAATCTGTTCCACTGCAAAGCCAAAGAGATAAGATTCGCTGCCTTCAGCTTTAATCC
36355675 G
260 G
*
36355676 CTCCACTTCAGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCACTACCTTTAGCTT
1 CTCCACTTCAGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCGCTACC-TTAGCTT
* * *
36355741 TAATCAGTTCCACTGCAACGCAAGGGAAATAAG
65 TAATCTGTTCTACTGCAACGCCAGGGAAATAAG
36355774 TTTATTGGAT
Statistics
Matches: 539, Mismatches: 76, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
260 2 0.00
261 532 0.99
262 5 0.01
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.31
Consensus pattern (260 bp):
CTCCACTTCAGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCGCTACCTTAGCTTT
AATCTGTTCTACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGTCTTAACATCAGGGAGAT
AAGATTTGCTGCCTTCAGCTTTAATCTGCTCCACTGCAACATCAGGGAAACAAGATTCGCTACCT
TTAGCTTTAATCTGTTCCACTGCAAAGCCAAAGAGATAAGATTCGCTGCCTTCAGCTTTAATCCG
Found at i:36355411 original size:138 final size:135
Alignment explanation
Indices: 36355184--36355754 Score: 476
Period size: 138 Copynumber: 4.4 Consensus size: 135
36355174 ATTCCATAGA
* * *
36355184 AACGCCAGGGAAACAAGATTCGCTA-CTCTTAGCTTTAATCTGTTCTACTACCACA-CCAAGGAA
1 AACGCCAGGGAAACAAGATTCGCTACCT-TTAGCTTTAATCTGTTCCACTA-CAAAGCCAAAGAA
*
36355247 ATAAGATTCGCTGCCTTCAGTCTTAATACCAGGGAGATAAGATTTGTTGCCTTCAGCTTTAATCT
64 ATAAGATTCGCTGCCTTCAGTCTTAAT--CA-GGAGATAAGATTTGCTGCCTTCAGCTTTAATCT
36355312 GCTCCACTGC
126 GCTCCACTGC
* * * *
36355322 AACGTCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTATAAATCCAAAGAGAT
1 AACGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTACAAAGCCAAAGAAAT
* * * ** * * **
36355387 AATATTCACTGCCTTTAG-CTT--T----A-ATTCG--CT-CT-ACTTCAGCTTTAATCTATTCC
66 AAGATTCGCTGCCTTCAGTCTTAATCAGGAGATAAGATTTGCTGCCTTCAGCTTTAATCTGCTCC
* *
36355440 ATTGT
131 ACTGC
* ** * * * **
36355445 AATGCCAGGGAAACAAGATTCGCTAATTTTAGCTTTAATCTGTTCTACTGCAACGCCAGGGAAAT
1 AACGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTACAAAGCCAAAGAAAT
* * *
36355510 AAGATTCGCTGCTTTCAGTCTTAACGTCACGGAGATAAGATTTGCTGCCTTTAGCTTTATTCTGC
66 AAGATTCGCTGCCTTCAGTCTTAA--TCA-GGAGATAAGATTTGCTGCCTTCAGCTTTAATCTGC
36355575 TCCACTGC
128 TCCACTGC
** * * * ** *
36355583 AACATCAGAGAAACAAGATTCACTACCTTTAGCTTTAATCTGTTCCACTGCAGGGCCAAAGAGAT
1 AACGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTACAAAGCCAAAGAAAT
* * **
36355648 AAGATTCGCTGCCTTCAG-CTT--T----A-AT--CA---GCTCCACTTCAGCTTTAATCTATTC
66 AAGATTCGCTGCCTTCAGTCTTAATCAGGAGATAAGATTTGCTGC-CTTCAGCTTTAATCTGCTC
36355700 CACTGC
130 CACTGC
* *
36355706 AACGCCAGGGAAACAAGATTCACTACCTTTAGCTTTAATCAGTTCCACT
1 AACGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACT
36355755 GCAACGCAAG
Statistics
Matches: 347, Mismatches: 68, Indels: 51
0.74 0.15 0.11
Matches are distributed among these distances:
122 4 0.01
123 154 0.44
124 4 0.01
125 2 0.01
127 5 0.01
128 3 0.01
133 2 0.01
134 3 0.01
135 1 0.00
136 1 0.00
137 10 0.03
138 156 0.45
139 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.31
Consensus pattern (135 bp):
AACGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTACAAAGCCAAAGAAAT
AAGATTCGCTGCCTTCAGTCTTAATCAGGAGATAAGATTTGCTGCCTTCAGCTTTAATCTGCTCC
ACTGC
Found at i:36355652 original size:51 final size:51
Alignment explanation
Indices: 36355541--36355682 Score: 158
Period size: 51 Copynumber: 2.8 Consensus size: 51
36355531 TAACGTCACG
* * * *
36355541 GAGATAAGATTTGCTGCCTTTAGCTTTATTCTGCTCCACTGCAACATCAGA
1 GAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACACCAAA
* * * * * ***
36355592 GAAACAAGATTCACTACCTTTAGCTTTAATCTGTTCCACTGCAGGGCCAAA
1 GAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACACCAAA
* *
36355643 GAGATAAGATTCGCTGCCTTCAGCTTTAATCAGCTCCACT
1 GAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACT
36355683 TCAGCTTTAA
Statistics
Matches: 72, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 72 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.30
Consensus pattern (51 bp):
GAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACACCAAA
Found at i:36355740 original size:72 final size:72
Alignment explanation
Indices: 36355613--36355754 Score: 185
Period size: 72 Copynumber: 2.0 Consensus size: 72
36355603 CACTACCTTT
* ** * * * *
36355613 AGCTTTAATCTGTTCCACTGCAGGGCCAAAGAGATAAGATTCGCTGCCTTCAGCTTTAATCAGCT
1 AGCTTTAATCTATTCCACTGCAACGCCAAAGAAACAAGATTCACTACCTTCAGCTTTAATCAGCT
36355678 CCACTTC
66 CCACTTC
** * *
36355685 AGCTTTAATCTATTCCACTGCAACGCCAGGGAAACAAGATTCACTACCTTTAGCTTTAATCAGTT
1 AGCTTTAATCTATTCCACTGCAACGCCAAAGAAACAAGATTCACTACCTTCAGCTTTAATCAGCT
36355750 CCACT
66 CCACT
36355755 GCAACGCAAG
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
72 59 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.30
Consensus pattern (72 bp):
AGCTTTAATCTATTCCACTGCAACGCCAAAGAAACAAGATTCACTACCTTCAGCTTTAATCAGCT
CCACTTC
Found at i:36356168 original size:24 final size:24
Alignment explanation
Indices: 36356136--36356193 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
36356126 CGGATTGCCC
*
36356136 CCACTGTAATCTTCAAGGTTCAAT
1 CCACTGTAATCTTCAAAGTTCAAT
*
36356160 CCACTGTAATCTTTAAAGTTCAAT
1 CCACTGTAATCTTCAAAGTTCAAT
36356184 CCACTGTAAT
1 CCACTGTAAT
36356194 TTCGGGACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.34
Consensus pattern (24 bp):
CCACTGTAATCTTCAAAGTTCAAT
Found at i:36359745 original size:3 final size:3
Alignment explanation
Indices: 36359739--36359800 Score: 61
Period size: 3 Copynumber: 20.7 Consensus size: 3
36359729 TGATAAAAAA
* * * * * * *
36359739 AAT AAT ACT ACT ACT AAT AAT AAT AGT AGT AGT AGT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
36359787 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
36359801 CAGTTTTAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.56, C:0.05, G:0.06, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:36366330 original size:3 final size:3
Alignment explanation
Indices: 36366322--36366440 Score: 157
Period size: 3 Copynumber: 39.7 Consensus size: 3
36366312 ATTGATAAAA
* * * * * * * * *
36366322 AAT AAT AAT AAT ACT ACT ACT AAT AAT AAT AGT AGT AGT AGT AGT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
36366370 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
36366418 AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AA
36366441 CAACAGTATT
Statistics
Matches: 112, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 112 1.00
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:36367253 original size:19 final size:19
Alignment explanation
Indices: 36367229--36367274 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
36367219 TGTTATTTTT
* *
36367229 TTTGCTGTCATTTGGTTTG
1 TTTGCTGTCATTCGGTTTC
*
36367248 TTTGCTCTCATTCGGTTTC
1 TTTGCTGTCATTCGGTTTC
36367267 TTTGCTGT
1 TTTGCTGT
36367275 TTGTTGCAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.04, C:0.17, G:0.22, T:0.57
Consensus pattern (19 bp):
TTTGCTGTCATTCGGTTTC
Found at i:36367860 original size:51 final size:51
Alignment explanation
Indices: 36367784--36367888 Score: 165
Period size: 51 Copynumber: 2.1 Consensus size: 51
36367774 ATCCACTCCA
*
36367784 CTTTAGCTTTAATCTATTCCACTGCAACGCCAAGGAAACAATATTTGCTAC
1 CTTTAGCTTTAATCTATTCCACTGCAACGCCAAGGAAACAAGATTTGCTAC
* * * *
36367835 CTTTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGC
1 CTTTAGCTTTAATCTATTCCACTGCAACGCCAAGGAAACAAGATTTGCTAC
36367886 CTT
1 CTT
36367889 CAGTCTTAAC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (51 bp):
CTTTAGCTTTAATCTATTCCACTGCAACGCCAAGGAAACAAGATTTGCTAC
Found at i:36368118 original size:72 final size:72
Alignment explanation
Indices: 36367973--36368109 Score: 168
Period size: 72 Copynumber: 1.9 Consensus size: 72
36367963 GATTCGCTAC
* * * * * *
36367973 CTTTAGCTTTAATCTATTCTAATGCAACGCCAAGGAGATAGGATTCACTGCCTTCAGCTTTAATC
1 CTTTAGCTTTAATCTATTCCAATGAAACGCCAAGGAAACAAGATTCACTACCTTCAGCTTTAATC
36368038 CTCTCCA
66 CTCTCCA
* * * *
36368045 CTTTAGCTTTAATTTATTCCATTGAAATGCCAGGGAAACAAGATTCACTACTCTT-AGCTTTAAT
1 CTTTAGCTTTAATCTATTCCAATGAAACGCCAAGGAAACAAGATTCACTAC-CTTCAGCTTTAAT
36368109 C
65 C
36368110 TGTTCCACTG
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
72 51 0.94
73 3 0.06
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.35
Consensus pattern (72 bp):
CTTTAGCTTTAATCTATTCCAATGAAACGCCAAGGAAACAAGATTCACTACCTTCAGCTTTAATC
CTCTCCA
Found at i:36368148 original size:123 final size:123
Alignment explanation
Indices: 36367953--36368413 Score: 388
Period size: 123 Copynumber: 3.6 Consensus size: 123
36367943 CTGCAACATT
* * * * * *
36367953 AGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTATTCTAATGCAACGCCAAGGAGATAGGATT
1 AGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACACCAAGGAAATAAGATT
* * * *
36368018 CACTGCCTTCAGCTTTAATCCTCTCCACTTTAGCTTTAATTTATTCCATTGAAATGCC
66 CGCTGCCTTCAGCTTTAATCCACTCCACTTCAGCTTTAATCTATTCCATTGAAATGCC
* *
36368076 AGGGAAACAAGATTCACTA-CTCTTAGCTTTAATCTGTTCCACTGCCACACCAAGGAAATAAGAT
1 AGGGAAACAAGATTCGCTACCT-TTAGCTTTAATCTGTTCCACTGCAACACCAAGGAAATAAGAT
* ** *
36368140 TCGTTGCCTTCAG-TCTTAATACCAGGGAGACCAGATTTGTTGCCTTCAGCTTTAATCTGTTCCA
65 TCGCTGCCTTCAGCT-TTAAT-CC----ACTCC--A--------CTTCAGCTTTAATCTATTCCA
* * * *
36368204 CTGCAACGTC
114 TTGAAATGCC
** * * *
36368214 AGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTATAA-ATCCAAAGAGATAATAT
1 AGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACA-CCAAGGAAATAAGAT
* * * * ** *
36368278 TCGTTGCCTTTAGCTTTAATTCGCTTTACTTCAGCTTTAATCTATTCCATTGTAATGCC
65 TCGCTGCCTTCAGCTTTAATCCACTCCACTTCAGCTTTAATCTATTCCATTGAAATGCC
* ** * * *
36368337 AGGGAGACAAGATTCGCTAATTTTAGCTTTAATCTGTTCTACTGCAACGCCAGGGAAATAAGATT
1 AGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACACCAAGGAAATAAGATT
*
36368402 CGCTGCTTTCAG
66 CGCTGCCTTCAG
36368414 TCTTAACGCC
Statistics
Matches: 264, Mismatches: 53, Indels: 42
0.74 0.15 0.12
Matches are distributed among these distances:
122 3 0.01
123 157 0.59
124 2 0.01
128 2 0.01
130 1 0.00
131 1 0.00
137 2 0.01
138 93 0.35
139 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (123 bp):
AGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACACCAAGGAAATAAGATT
CGCTGCCTTCAGCTTTAATCCACTCCACTTCAGCTTTAATCTATTCCATTGAAATGCC
Found at i:36368243 original size:261 final size:261
Alignment explanation
Indices: 36367773--36368559 Score: 1056
Period size: 261 Copynumber: 3.0 Consensus size: 261
36367763 TTGGTGTTTC
* * * * * *
36367773 AATCCACTCCACTTTAGCTTTAATCTATTCCACTGCAACGCCAAGGAAACAATATTTGCTAC-CT
1 AATCCACTCCACTTTAGCTTTAATCTATTCCATTGAAATGCCAGGGAAACAAGATTCGCTACTC-
* *
36367837 TTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCTGCCTTCAGTCTTAACGTC
65 TTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGTCTTAACGCC
** * * *
36367902 AGGGAGATAAGATTCACTGCCTTCAGCTTTAATCTACTT-CGCTGCAACATTAGGGAAACAAGAT
130 AGGGAGATAAGATTTGCTGCCTTCAGCTTTAATCT-GTTCCACTGCAACATCAGGGAAACAAGAT
* * * * * * *
36367966 TCGCTACCTTTAGCTTTAATCTATTCTAATGCAACGCCAAGGAGATAGGATTCACTGCCTTCAGC
194 TCGCTACCTTTAGCTTTAATCTGTTCCACTGCAAAGCCAAAGAGATAAGATTCGCTGCCTTCAGC
36368031 TTT
259 TTT
* * *
36368034 AATCCTCTCCACTTTAGCTTTAATTTATTCCATTGAAATGCCAGGGAAACAAGATTCACTACTCT
1 AATCCACTCCACTTTAGCTTTAATCTATTCCATTGAAATGCCAGGGAAACAAGATTCGCTACTCT
* * * * **
36368099 TAGCTTTAATCTGTTCCACTGCCACACCAAGGAAATAAGATTCGTTGCCTTCAGTCTTAATACCA
66 TAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGTCTTAACGCCA
** * *
36368164 GGGAGACCAGATTTGTTGCCTTCAGCTTTAATCTGTTCCACTGCAACGTCAGGGAAACAAGATTC
131 GGGAGATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACATCAGGGAAACAAGATTC
** * * * *
36368229 GCTACCTTTAGCTTTAATCTGTTCCACTATAAATCCAAAGAGATAATATTCGTTGCCTTTAGCTT
196 GCTACCTTTAGCTTTAATCTGTTCCACTGCAAAGCCAAAGAGATAAGATTCGCTGCCTTCAGCTT
36368294 T
261 T
* * ** * * * * *
36368295 AATTCGCTTTACTTCAGCTTTAATCTATTCCATTGTAATGCCAGGGAGACAAGATTCGCTAATTT
1 AATCCACTCCACTTTAGCTTTAATCTATTCCATTGAAATGCCAGGGAAACAAGATTCGCTACTCT
* *
36368360 TAGCTTTAATCTGTTCTACTGCAACGCCAGGGAAATAAGATTCGCTGCTTTCAGTCTTAACGCCA
66 TAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGTCTTAACGCCA
* * *
36368425 GGGAGATAAGATTTGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACATCAGAGAAACAAGATTC
131 GGGAGATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACATCAGGGAAACAAGATTC
*
36368490 GCTACCTTTAGCTTTAATCTGTTCCACTGCAAGGCCAAAGAGATAAGATTCGCTGCCTTCAGCTT
196 GCTACCTTTAGCTTTAATCTGTTCCACTGCAAAGCCAAAGAGATAAGATTCGCTGCCTTCAGCTT
36368555 T
261 T
36368556 AATC
1 AATC
36368560 TATTCCATTG
Statistics
Matches: 451, Mismatches: 73, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
260 2 0.00
261 448 0.99
262 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (261 bp):
AATCCACTCCACTTTAGCTTTAATCTATTCCATTGAAATGCCAGGGAAACAAGATTCGCTACTCT
TAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGTCTTAACGCCA
GGGAGATAAGATTTGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACATCAGGGAAACAAGATTC
GCTACCTTTAGCTTTAATCTGTTCCACTGCAAAGCCAAAGAGATAAGATTCGCTGCCTTCAGCTT
T
Found at i:36368297 original size:138 final size:136
Alignment explanation
Indices: 36368075--36368559 Score: 464
Period size: 138 Copynumber: 3.6 Consensus size: 136
36368065 ATTGAAATGC
* * *
36368075 CAGGGAAACAAGATTCACTA-CTCTTAGCTTTAATCTGTTCCACTGCCACA-CCAAGGAAATAAG
1 CAGGGAAACAAGATTCGCTACCT-TTAGCTTTAATCTGTTCCACTG-CAAAGCCAAAGAAATAAG
*
36368138 ATTCGTTGCCTTCAGTCTTAATACCAGGGAGACCAGATTTGTTGCCTTCAGCTTTAATCTGTTCC
64 ATTCGCTGCCTTCAGTCTTAAT-CCAGGGAGA-CAGATTTGTTGCCTTCAGCTTTAATCTGTTCC
36368203 ACTGCAACGT
127 ACTGCAACGT
** * * *
36368213 CAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTATAAATCCAAAGAGATAATAT
1 CAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAAAGCCAAAGAAATAAGAT
* * * * * *
36368278 TCGTTGCCTTTAG-CTTTAATTC-----G-C-----T-TT-ACTTCAGCTTTAATCTATTCCATT
66 TCGCTGCCTTCAGTC-TTAATCCAGGGAGACAGATTTGTTGCCTTCAGCTTTAATCTGTTCCACT
* * *
36368329 GTAATGC
130 GCAACGT
* ** * * **
36368336 CAGGGAGACAAGATTCGCTAATTTTAGCTTTAATCTGTTCTACTGCAACGCCAGGGAAATAAGAT
1 CAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAAAGCCAAAGAAATAAGAT
* * * * * *
36368401 TCGCTGCTTTCAGTCTTAACGCCAGGGAGATAAGATTTGCTGCCTTTAGCTTTAATCTGCTCCAC
66 TCGCTGCCTTCAGTCTTAA-TCCAGGGAGA-CAGATTTGTTGCCTTCAGCTTTAATCTGTTCCAC
*
36368466 TGCAACAT
129 TGCAACGT
* * *
36368474 CAGAGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAAGGCCAAAGAGATAAGAT
1 CAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAAAGCCAAAGAAATAAGAT
36368539 TCGCTGCCTTCAG-CTTTAATC
66 TCGCTGCCTTCAGTC-TTAATC
36368560 TATTCCATTG
Statistics
Matches: 273, Mismatches: 54, Indels: 41
0.74 0.15 0.11
Matches are distributed among these distances:
123 92 0.34
124 4 0.01
125 1 0.00
129 1 0.00
130 1 0.00
132 1 0.00
136 1 0.00
137 7 0.03
138 163 0.60
139 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (136 bp):
CAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAAAGCCAAAGAAATAAGAT
TCGCTGCCTTCAGTCTTAATCCAGGGAGACAGATTTGTTGCCTTCAGCTTTAATCTGTTCCACTG
CAACGT
Found at i:36368487 original size:87 final size:87
Alignment explanation
Indices: 36368334--36368492 Score: 219
Period size: 87 Copynumber: 1.8 Consensus size: 87
36368324 CCATTGTAAT
* * * * * *
36368334 GCCAGGGAGACAAGATTCGCTAATTTTAGCTTTAATCTGTTCTACTGCAACGCCAGGGAAATAAG
1 GCCAGGGAGACAAGATTCGCTAACTTTAGCTTTAATCTGCTCCACTGCAACACCAGAGAAACAAG
36368399 ATTCGCTGCTTTCAGTCTTAAC
66 ATTCGCTGCTTTCAGTCTTAAC
* * ** *
36368421 GCCAGGGAGATAAGATTTGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACATCAGAGAAACAAG
1 GCCAGGGAGACAAGATTCGCTAACTTTAGCTTTAATCTGCTCCACTGCAACACCAGAGAAACAAG
36368486 ATTCGCT
66 ATTCGCT
36368493 ACCTTTAGCT
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
87 61 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (87 bp):
GCCAGGGAGACAAGATTCGCTAACTTTAGCTTTAATCTGCTCCACTGCAACACCAGAGAAACAAG
ATTCGCTGCTTTCAGTCTTAAC
Found at i:36368498 original size:51 final size:51
Alignment explanation
Indices: 36368432--36368624 Score: 224
Period size: 51 Copynumber: 3.8 Consensus size: 51
36368422 CCAGGGAGAT
* * * *
36368432 AAGATTTGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACATCAGAGAAAC
1 AAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACACCAGAGAAAC
** * * *
36368483 AAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAAGGCCAAAGAGAT
1 AAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACACCAGAGAAAC
* * * * * *
36368534 AAGATTCGCTGCCTTCAGCTTTAATCTATTCCATTGCAACCCCAGGGAAAC
1 AAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACACCAGAGAAAC
* * *
36368585 AAGATTCACTACCTTTAGCTTTAATCAGTTCCACTACAAC
1 AAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAAC
36368625 GCAAGGGAAA
Statistics
Matches: 116, Mismatches: 26, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 116 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (51 bp):
AAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACACCAGAGAAAC
Found at i:36368603 original size:102 final size:102
Alignment explanation
Indices: 36368427--36368619 Score: 296
Period size: 102 Copynumber: 1.9 Consensus size: 102
36368417 TAACGCCAGG
* * * * *
36368427 GAGATAAGATTTGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACATCAGAGAAACAAGATTCGC
1 GAGATAAGATTCGCTGCCTTCAGCTTTAATCTACTCCACTGCAACACCAGAGAAACAAGATTCAC
*
36368492 TACCTTTAGCTTTAATCTGTTCCACTGCAAGGCCAAA
66 TACCTTTAGCTTTAATCAGTTCCACTGCAAGGCCAAA
* * * *
36368529 GAGATAAGATTCGCTGCCTTCAGCTTTAATCTATTCCATTGCAACCCCAGGGAAACAAGATTCAC
1 GAGATAAGATTCGCTGCCTTCAGCTTTAATCTACTCCACTGCAACACCAGAGAAACAAGATTCAC
36368594 TACCTTTAGCTTTAATCAGTTCCACT
66 TACCTTTAGCTTTAATCAGTTCCACT
36368620 ACAACGCAAG
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
102 81 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (102 bp):
GAGATAAGATTCGCTGCCTTCAGCTTTAATCTACTCCACTGCAACACCAGAGAAACAAGATTCAC
TACCTTTAGCTTTAATCAGTTCCACTGCAAGGCCAAA
Found at i:36368638 original size:102 final size:102
Alignment explanation
Indices: 36368418--36368638 Score: 291
Period size: 102 Copynumber: 2.2 Consensus size: 102
36368408 TTTCAGTCTT
* * * * *
36368418 AACGCCAGGGAGATAAGATTTGCTGCCTTTAGCTTTAATCTGCTCCACTGCAACATCAGAGAAAC
1 AACGCAAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTACTCCACTGCAACACCAGAGAAAC
* * *
36368483 AAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGC
66 AAGATTCACTACCTTTAGCTTTAATCAGTTCCACTAC
* * * * * *
36368520 AAGGCCAA-AGAGATAAGATTCGCTGCCTTCAGCTTTAATCTATTCCATTGCAACCCCAGGGAAA
1 AACG-CAAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTACTCCACTGCAACACCAGAGAAA
36368584 CAAGATTCACTACCTTTAGCTTTAATCAGTTCCACTAC
65 CAAGATTCACTACCTTTAGCTTTAATCAGTTCCACTAC
*
36368622 AACGCAAGGGAAATAAG
1 AACGCAAGGGAGATAAG
36368639 TTTATTGGAT
Statistics
Matches: 100, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
101 3 0.03
102 95 0.95
103 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (102 bp):
AACGCAAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTACTCCACTGCAACACCAGAGAAAC
AAGATTCACTACCTTTAGCTTTAATCAGTTCCACTAC
Found at i:36369028 original size:24 final size:24
Alignment explanation
Indices: 36369001--36369058 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
36368991 TCGGATTGCC
*
36369001 CCACTGTAATCTTTAAGGTTCAAT
1 CCACTGTAATCTTTAAAGTTCAAT
*
36369025 CCACTATAATCTTTAAAGTTCAAT
1 CCACTGTAATCTTTAAAGTTCAAT
36369049 CCACTGTAAT
1 CCACTGTAAT
36369059 TTCGGGACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (24 bp):
CCACTGTAATCTTTAAAGTTCAAT
Found at i:36379578 original size:40 final size:40
Alignment explanation
Indices: 36379547--36379639 Score: 143
Period size: 40 Copynumber: 2.3 Consensus size: 40
36379537 AGGTTTTGTT
36379547 TCTAGCAGGCTTATTG-TCAGTGAAATTTTCAGACTTAATG
1 TCTAGCAGGCTTATTGCT-AGTGAAATTTTCAGACTTAATG
*
36379587 TCTTGCAGGCTTATTGCTAGTGAAATTTTCAGACTTAATG
1 TCTAGCAGGCTTATTGCTAGTGAAATTTTCAGACTTAATG
* *
36379627 TGTAGCTGGCTTA
1 TCTAGCAGGCTTA
36379640 ATGCCGATGT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 47 0.98
41 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.39
Consensus pattern (40 bp):
TCTAGCAGGCTTATTGCTAGTGAAATTTTCAGACTTAATG
Found at i:36384804 original size:16 final size:17
Alignment explanation
Indices: 36384783--36384815 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
36384773 TATAACATCT
36384783 AATACAA-ACTTACCAA
1 AATACAATACTTACCAA
*
36384799 AATACAATAGTTACCAA
1 AATACAATACTTACCAA
36384816 CAACTCGACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.55, C:0.21, G:0.03, T:0.21
Consensus pattern (17 bp):
AATACAATACTTACCAA
Found at i:36388453 original size:17 final size:18
Alignment explanation
Indices: 36388427--36388460 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
36388417 AAACCCCGAA
*
36388427 AACCCGAAAAA-ATAAAG
1 AACCCAAAAAACATAAAG
36388444 AACCCAAAAAACATAAA
1 AACCCAAAAAACATAAA
36388461 CACAAAATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.68, C:0.21, G:0.06, T:0.06
Consensus pattern (18 bp):
AACCCAAAAAACATAAAG
Found at i:36395801 original size:11 final size:11
Alignment explanation
Indices: 36395787--36395819 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
36395777 TGTAATAGAT
36395787 TTAATATTTAA
1 TTAATATTTAA
36395798 TTAATATTTAA
1 TTAATATTTAA
*
36395809 TTTA-ATTTAA
1 TTAATATTTAA
36395819 T
1 T
36395820 GTTTATCTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (11 bp):
TTAATATTTAA
Found at i:36398122 original size:28 final size:29
Alignment explanation
Indices: 36398052--36398134 Score: 78
Period size: 28 Copynumber: 2.9 Consensus size: 29
36398042 CCATCATCAA
* *
36398052 TACATAGTACCTAAAACTGTAATCACCAG
1 TACAAAGTACCTGAAACTGTAATCACCAG
* ** * *
36398081 CACTGAGTGCCTGAAACTGTAA-CACCGG
1 TACAAAGTACCTGAAACTGTAATCACCAG
* *
36398109 TACAAAGTACCTGATACTATAATCAC
1 TACAAAGTACCTGAAACTGTAATCAC
36398135 TGGCAACTAG
Statistics
Matches: 41, Mismatches: 12, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
28 21 0.51
29 20 0.49
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.23
Consensus pattern (29 bp):
TACAAAGTACCTGAAACTGTAATCACCAG
Found at i:36401131 original size:139 final size:139
Alignment explanation
Indices: 36400881--36401163 Score: 494
Period size: 139 Copynumber: 2.0 Consensus size: 139
36400871 TAGGGAAACG
* * *
36400881 ACAAAAGAGGAATAAAGTCGGAAATTGCATTTATGAAAATGAAACAATAGAGAAAGGAATTGAAC
1 ACAAAAGAGGAATAAAGTCGGAAATTGCAATTATGAAAACGAAACAAAAGAGAAAGGAATTGAAC
* * *
36400946 AGGGGAAAAACGAACGAGGGAGTTTACAGAATTTTTAAAGAGAAAGGAAATGAACATGGGAAATG
66 AGGGGAAAAACGAAAGAAGGAGTTTACAAAATTTTTAAAGAGAAAGGAAATGAACATGGGAAATG
36401011 AACAAGTTT
131 AACAAGTTT
*
36401020 ACAAAAGAGGAATAAAGTTGGAAATTGCAATTATGAAAACGAAACAAAAGAGAAAGGAATTGAAC
1 ACAAAAGAGGAATAAAGTCGGAAATTGCAATTATGAAAACGAAACAAAAGAGAAAGGAATTGAAC
*
36401085 AGGGGAAAAACGAAAGAAGGAGTTTACAAAATTTTTAAAGAGAAAGGAAATGAGCATGGGAAATG
66 AGGGGAAAAACGAAAGAAGGAGTTTACAAAATTTTTAAAGAGAAAGGAAATGAACATGGGAAATG
36401150 AACAAGTTT
131 AACAAGTTT
36401159 ACAAA
1 ACAAA
36401164 TATATAGAGT
Statistics
Matches: 136, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
139 136 1.00
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.18
Consensus pattern (139 bp):
ACAAAAGAGGAATAAAGTCGGAAATTGCAATTATGAAAACGAAACAAAAGAGAAAGGAATTGAAC
AGGGGAAAAACGAAAGAAGGAGTTTACAAAATTTTTAAAGAGAAAGGAAATGAACATGGGAAATG
AACAAGTTT
Found at i:36409358 original size:18 final size:17
Alignment explanation
Indices: 36409335--36409395 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 17
36409325 TTATCAATCT
36409335 ACATGTATAAGCATACCA
1 ACATGTATAAGCA-ACCA
36409353 ACATGT-TAA-CAACCA
1 ACATGTATAAGCAACCA
36409368 ACCTACTTGTATAAGCAAACCA
1 A-C-A--TGTATAAGC-AACCA
36409390 ACATGT
1 ACATGT
36409396 TAACGACCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 14
0.72 0.00 0.28
Matches are distributed among these distances:
15 5 0.14
16 3 0.08
17 4 0.11
18 9 0.25
19 3 0.08
20 4 0.11
21 2 0.06
22 6 0.17
ACGTcount: A:0.43, C:0.25, G:0.10, T:0.23
Consensus pattern (17 bp):
ACATGTATAAGCAACCA
Found at i:36409369 original size:15 final size:16
Alignment explanation
Indices: 36409335--36409411 Score: 50
Period size: 15 Copynumber: 4.4 Consensus size: 16
36409325 TTATCAATCT
36409335 ACATGTATAAGCATACCA
1 ACATGT-TAAGCA-ACCA
36409353 ACATGTTAA-CAACCA
1 ACATGTTAAGCAACCA
36409368 ACCTACTTGTATAAGCAAACCA
1 A-C-A--TGT-TAAGC-AACCA
*
36409390 ACATGTTAA-CGACCA
1 ACATGTTAAGCAACCA
*
36409405 ATATGTT
1 ACATGTT
36409412 TAATTCTAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
15 15 0.30
16 4 0.08
17 7 0.14
18 9 0.18
19 3 0.06
20 4 0.08
21 2 0.04
22 6 0.12
ACGTcount: A:0.42, C:0.23, G:0.10, T:0.25
Consensus pattern (16 bp):
ACATGTTAAGCAACCA
Found at i:36409390 original size:37 final size:37
Alignment explanation
Indices: 36409333--36409405 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
36409323 CATTATCAAT
*
36409333 CTACATGTATAAGCATACCAACATGTTAACAACCAAC
1 CTACATGTATAAGCAAACCAACATGTTAACAACCAAC
* *
36409370 CTACTTGTATAAGCAAACCAACATGTTAACGACCAA
1 CTACATGTATAAGCAAACCAACATGTTAACAACCAA
36409406 TATGTTTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.42, C:0.26, G:0.10, T:0.22
Consensus pattern (37 bp):
CTACATGTATAAGCAAACCAACATGTTAACAACCAAC
Found at i:36415162 original size:15 final size:14
Alignment explanation
Indices: 36415141--36415176 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
36415131 ATAATCCTTA
*
36415141 ATAATTATCTTAAT
1 ATAATTATCCTAAT
36415155 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
36415170 ATAATTA
1 ATAATTA
36415177 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:36420534 original size:20 final size:20
Alignment explanation
Indices: 36420509--36420548 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
36420499 CCTTAATTTT
36420509 TGTCATGCTGAAGCTTGCGG
1 TGTCATGCTGAAGCTTGCGG
36420529 TGTCATGCTGAAGCTTGCGG
1 TGTCATGCTGAAGCTTGCGG
36420549 AGGTCACTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.20, G:0.35, T:0.30
Consensus pattern (20 bp):
TGTCATGCTGAAGCTTGCGG
Found at i:36421693 original size:7 final size:6
Alignment explanation
Indices: 36421676--36421734 Score: 64
Period size: 7 Copynumber: 8.8 Consensus size: 6
36421666 AGACAACCCA
36421676 ATTTTT ATTTTT ACTTTTT ATTTTT ATTTTTT ATTATTT ATTTATTT ATTTATT
1 ATTTTT ATTTTT A-TTTTT ATTTTT A-TTTTT ATT-TTT A-TT-TTT ATTT-TT
36421730 ATTTT
1 ATTTT
36421735 CTTTTCTTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
6 17 0.35
7 24 0.50
8 7 0.15
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (6 bp):
ATTTTT
Found at i:36421695 original size:13 final size:13
Alignment explanation
Indices: 36421677--36421734 Score: 80
Period size: 13 Copynumber: 4.2 Consensus size: 13
36421667 GACAACCCAA
*
36421677 TTTTTATTTTTAC
1 TTTTTATTTTTAT
36421690 TTTTTATTTTTAT
1 TTTTTATTTTTAT
36421703 TTTTTATTATTTAT
1 TTTTTATT-TTTAT
36421717 TTATTTATTTATTAT
1 TT-TTTATTT-TTAT
36421732 TTT
1 TTT
36421735 CTTTTCTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
13 20 0.49
14 9 0.22
15 12 0.29
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTTATTTTTAT
Found at i:36421718 original size:4 final size:4
Alignment explanation
Indices: 36421698--36421733 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
36421688 ACTTTTTATT
36421698 TTTA TTT- TTTA -TTA TTTA TTTA TTTA TTTA -TTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
36421734 TCTTTTCTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
3 9 0.31
4 20 0.69
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:36431171 original size:36 final size:36
Alignment explanation
Indices: 36431124--36431197 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
36431114 AAGATCCAGT
36431124 TTAGTGGTATGCCCATGGAAGATCCACATCTCCAAC
1 TTAGTGGTATGCCCATGGAAGATCCACATCTCCAAC
36431160 TTAGTGGTATGCCCATGGAAGATCCACATCTCCAAC
1 TTAGTGGTATGCCCATGGAAGATCCACATCTCCAAC
36431196 TT
1 TT
36431198 CAATTGTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (36 bp):
TTAGTGGTATGCCCATGGAAGATCCACATCTCCAAC
Found at i:36432774 original size:27 final size:27
Alignment explanation
Indices: 36432755--36432925 Score: 213
Period size: 27 Copynumber: 6.4 Consensus size: 27
36432745 GGGTATAACA
*
36432755 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
* * *
36432782 ATCATTTTACCCTATAGGGATATTTTG
1 GTCATTTTACCCTATAGGGGTATTTCG
*
36432809 GTCATTTTACCCTAT-GGGGTATTTTG
1 GTCATTTTACCCTATAGGGGTATTTCG
* *
36432835 GTCATTTTACCCTATAGAGGTATTTTG
1 GTCATTTTACCCTATAGGGGTATTTCG
*
36432862 GTCATTTTACCCTATTGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
* * *
36432889 ATCATTTTACCCTGT-GGGGACATTT-G
1 GTCATTTTACCCTATAGGGG-TATTTCG
36432915 GTCATTTTACC
1 GTCATTTTACC
36432926 AATTTTAGTG
Statistics
Matches: 128, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
26 40 0.31
27 88 0.69
ACGTcount: A:0.19, C:0.18, G:0.20, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTTCG
Found at i:36432839 original size:80 final size:80
Alignment explanation
Indices: 36432755--36432925 Score: 236
Period size: 80 Copynumber: 2.1 Consensus size: 80
36432745 GGGTATAACA
* * * *
36432755 GTCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATAGGGATATTTTGGTCATTTTACC
1 GTCATTTTACCCTATAGAGGTATTTCGATCATTTTACCCTATAGGGATATTTCGATCATTTTACC
*
36432820 CTATGGGGTA-TTTTG
66 CTATGGGG-ACATTTG
* * * *
36432835 GTCATTTTACCCTATAGAGGTATTTTGGTCATTTTACCCTATTGGGGTATTTCGATCATTTTACC
1 GTCATTTTACCCTATAGAGGTATTTCGATCATTTTACCCTATAGGGATATTTCGATCATTTTACC
*
36432900 CTGTGGGGACATTTG
66 CTATGGGGACATTTG
36432915 GTCATTTTACC
1 GTCATTTTACC
36432926 AATTTTAGTG
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
79 1 0.01
80 79 0.99
ACGTcount: A:0.19, C:0.18, G:0.20, T:0.43
Consensus pattern (80 bp):
GTCATTTTACCCTATAGAGGTATTTCGATCATTTTACCCTATAGGGATATTTCGATCATTTTACC
CTATGGGGACATTTG
Found at i:36432850 original size:53 final size:53
Alignment explanation
Indices: 36432755--36432925 Score: 256
Period size: 53 Copynumber: 3.2 Consensus size: 53
36432745 GGGTATAACA
36432755 GTCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATAGGGATATTTTG
1 GTCATTTTACCCTAT-GGGGTATTTCGATCATTTTACCCTATAGGGATATTTTG
* *
36432809 GTCATTTTACCCTATGGGGTATTTTGGTCATTTTACCCTATAGAGG-TATTTTG
1 GTCATTTTACCCTATGGGGTATTTCGATCATTTTACCCTATAG-GGATATTTTG
* * *
36432862 GTCATTTTACCCTATTGGGGTATTTCGATCATTTTACCCTGTGGGGACA-TTTG
1 GTCATTTTACCCTA-TGGGGTATTTCGATCATTTTACCCTATAGGGATATTTTG
36432915 GTCATTTTACC
1 GTCATTTTACC
36432926 AATTTTAGTG
Statistics
Matches: 107, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
53 64 0.60
54 43 0.40
ACGTcount: A:0.19, C:0.18, G:0.20, T:0.43
Consensus pattern (53 bp):
GTCATTTTACCCTATGGGGTATTTCGATCATTTTACCCTATAGGGATATTTTG
Found at i:36443140 original size:41 final size:41
Alignment explanation
Indices: 36443073--36443257 Score: 194
Period size: 41 Copynumber: 4.5 Consensus size: 41
36443063 GTTTACAAAG
* ** *
36443073 AAGCGCCGCTAATGCTCAAGGATTTAGCGGCATTTTTGAAA
1 AAGCGCCTCTAATGCTCGGGGCTTTAGCGGCATTTTTGAAA
* *
36443114 AAGCACCTCTAATGCTCGGGGCTTTAGCGGCGTTTTTGAAA
1 AAGCGCCTCTAATGCTCGGGGCTTTAGCGGCATTTTTGAAA
* ** *
36443155 AGGCG-CTGCTAATGCTTC-GGGCTTTAGCAACGTTTTTGAAA
1 AAGCGCCT-CTAATGC-TCGGGGCTTTAGCGGCATTTTTGAAA
* * * * *
36443196 AGGCGCCGCTAATGCTCGGTGCTTTAGCGGCATTTGTGAAG
1 AAGCGCCTCTAATGCTCGGGGCTTTAGCGGCATTTTTGAAA
*
36443237 AAGCGCCACTAATGCTCGGGG
1 AAGCGCCTCTAATGCTCGGGG
36443258 ACATAATGGC
Statistics
Matches: 120, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
40 4 0.03
41 113 0.94
42 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (41 bp):
AAGCGCCTCTAATGCTCGGGGCTTTAGCGGCATTTTTGAAA
Found at i:36443191 original size:82 final size:81
Alignment explanation
Indices: 36443070--36443256 Score: 214
Period size: 82 Copynumber: 2.3 Consensus size: 81
36443060 AGAGTTTACA
* * * ** * *
36443070 AAGAAGCGCCGCTAATGCTCAAGGATTTAGCGGCATTTTTGAAAAAGCACCTCTAATGCTCGGGG
1 AAGAAGCGCCACTAATGCTC-GGGCTTTAGCAACGTTTTTGAAAAAGCACCGCTAATGCTCGGGG
* *
36443135 CTTTAGCGGCGTTTTTG
65 CTTTAGCGGCATTTGTG
** * * *
36443152 AA-AAGGCGCTGCTAATGCTTCGGGCTTTAGCAACGTTTTTGAAAAGGCGCCGCTAATGCTCGGT
1 AAGAA-GCGCCACTAATGC-TCGGGCTTTAGCAACGTTTTTGAAAAAGCACCGCTAATGCTCGGG
36443216 GCTTTAGCGGCATTTGTG
64 GCTTTAGCGGCATTTGTG
36443234 AAGAAGCGCCACTAATGCTCGGG
1 AAGAAGCGCCACTAATGCTCGGG
36443257 GACATAATGG
Statistics
Matches: 88, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
81 7 0.08
82 77 0.88
83 4 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (81 bp):
AAGAAGCGCCACTAATGCTCGGGCTTTAGCAACGTTTTTGAAAAAGCACCGCTAATGCTCGGGGC
TTTAGCGGCATTTGTG
Found at i:36443396 original size:40 final size:41
Alignment explanation
Indices: 36443306--36443475 Score: 218
Period size: 41 Copynumber: 4.1 Consensus size: 41
36443296 GAAAAAGAAC
* **
36443306 CGCTAATGCTTGGGGATTTAACGGCGTTTTTGAGGAAGCG-
1 CGCTAATGCTCGGGGATTTAACGGCGTTTTTGATAAAGCGT
* *
36443346 CAGCTAATGCTCGGGGACTTAGCGGCGTTTTTGA-AAAGCGT
1 C-GCTAATGCTCGGGGATTTAACGGCGTTTTTGATAAAGCGT
* *
36443387 CGCTAATGCTCGGGGTTTTAGCGGCGTTTTTGATAAAGCGT
1 CGCTAATGCTCGGGGATTTAACGGCGTTTTTGATAAAGCGT
* * *
36443428 CGCTAATGCTCGAGGTTTTAACGGCATTTTTTGATAAAGCGT
1 CGCTAATGCTCGGGGATTTAACGGC-GTTTTTGATAAAGCGT
36443470 CGCTAA
1 CGCTAA
36443476 AAATATTTTA
Statistics
Matches: 117, Mismatches: 9, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
40 36 0.31
41 60 0.51
42 21 0.18
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (41 bp):
CGCTAATGCTCGGGGATTTAACGGCGTTTTTGATAAAGCGT
Found at i:36443414 original size:81 final size:83
Alignment explanation
Indices: 36443306--36443475 Score: 220
Period size: 81 Copynumber: 2.1 Consensus size: 83
36443296 GAAAAAGAAC
* * * *
36443306 CGCTAATGCTTGGGGATTTAACGGCGTTTTTGAGGAAGCG-CAGCTAATGCTCGGGGACTTAGCG
1 CGCTAATGCTCGGGGATTTAACGGCGTTTTTGAGAAAGCGTC-GCTAATGCTCGAGGACTTAACG
36443370 GC-GTTTTTGA-AAAGCGT
65 GCAGTTTTTGATAAAGCGT
* * * **
36443387 CGCTAATGCTCGGGGTTTTAGCGGCGTTTTTGATAAAGCGTCGCTAATGCTCGAGGTTTTAACGG
1 CGCTAATGCTCGGGGATTTAACGGCGTTTTTGAGAAAGCGTCGCTAATGCTCGAGGACTTAACGG
*
36443452 CATTTTTTGATAAAGCGT
66 CAGTTTTTGATAAAGCGT
36443470 CGCTAA
1 CGCTAA
36443476 AAATATTTTA
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
81 55 0.72
82 8 0.11
83 13 0.17
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (83 bp):
CGCTAATGCTCGGGGATTTAACGGCGTTTTTGAGAAAGCGTCGCTAATGCTCGAGGACTTAACGG
CAGTTTTTGATAAAGCGT
Found at i:36446589 original size:22 final size:22
Alignment explanation
Indices: 36446564--36446638 Score: 132
Period size: 22 Copynumber: 3.4 Consensus size: 22
36446554 GAAAGAGGGT
*
36446564 TTAGTTCGTTAAACATGAGAGC
1 TTAGTACGTTAAACATGAGAGC
36446586 TTAGTACGTTAAACATGAGAGC
1 TTAGTACGTTAAACATGAGAGC
*
36446608 TTAGTACGTGAAACATGAGAGC
1 TTAGTACGTTAAACATGAGAGC
36446630 TTAGTACGT
1 TTAGTACGT
36446639 ACTATCAACA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.29
Consensus pattern (22 bp):
TTAGTACGTTAAACATGAGAGC
Found at i:36447256 original size:87 final size:87
Alignment explanation
Indices: 36447110--36447303 Score: 298
Period size: 87 Copynumber: 2.2 Consensus size: 87
36447100 TCAACTTATG
**
36447110 GAGGCAGCATTGAGAGAAGCTGAAGTCCAAAGAAAATATGAAGAACTCCAACTACAACTTAAAGC
1 GAGGCAGCAGCGAGAGAAGCTGAAGTCCAAAGAAAATATGAAGAACTCCAACTACAACTTAAAGC
*
36447175 AGATGCAGCAGCGAGGGGAGTA
66 AGATGCAGCAGCGAGGGGAGCA
* * * *
36447197 GAGGCAGCAGCGAGAGAAGCTGAGGTTCAAAGAAAATATGAAGAACTTCAGCTACAACTTAAAGC
1 GAGGCAGCAGCGAGAGAAGCTGAAGTCCAAAGAAAATATGAAGAACTCCAACTACAACTTAAAGC
*
36447262 TGATGCAGCAGCGAGGGGAGCA
66 AGATGCAGCAGCGAGGGGAGCA
* *
36447284 GAGGCTGCAGCGAGGGAAGC
1 GAGGCAGCAGCGAGAGAAGC
36447304 AGAGCAGAGG
Statistics
Matches: 97, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 97 1.00
ACGTcount: A:0.38, C:0.18, G:0.31, T:0.13
Consensus pattern (87 bp):
GAGGCAGCAGCGAGAGAAGCTGAAGTCCAAAGAAAATATGAAGAACTCCAACTACAACTTAAAGC
AGATGCAGCAGCGAGGGGAGCA
Found at i:36448308 original size:21 final size:21
Alignment explanation
Indices: 36448282--36448324 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
36448272 ATTTCCAGAG
* *
36448282 CCACCACTGCTGCCTCCGCCA
1 CCACCACTGCTACCACCGCCA
*
36448303 CCACCATTGCTACCACCGCCA
1 CCACCACTGCTACCACCGCCA
36448324 C
1 C
36448325 TTCCACCTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.56, G:0.12, T:0.14
Consensus pattern (21 bp):
CCACCACTGCTACCACCGCCA
Found at i:36465412 original size:42 final size:42
Alignment explanation
Indices: 36465310--36465460 Score: 155
Period size: 43 Copynumber: 3.5 Consensus size: 42
36465300 AATGTGATAT
* * *
36465310 CGTGTAAGACCATGTCTAGGAC-GTTGGCATCGATTTGAGATTTA
1 CGTGTAAGACCATGTCTGGGACAG-TGGCATCG-TTAGTGA-TTA
* * *
36465354 CGTGTAAGACAATGTCTGGGACA-TTGCAATCGTATA-TGCTTA
1 CGTGTAAGACCATGTCTGGGACAGTGGC-ATCGT-TAGTGATTA
*
36465396 CGTGTAAGACCCTGTCTGGGACAGTGGCATCGTTAGTTGATTA
1 CGTGTAAGACCATGTCTGGGACAGTGGCATCGTTAG-TGATTA
*
36465439 CATGTAAGACCATGTCTGGGAC
1 CGTGTAAGACCATGTCTGGGAC
36465461 TTTGACATTG
Statistics
Matches: 89, Mismatches: 12, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
41 2 0.02
42 29 0.33
43 33 0.37
44 25 0.28
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACAGTGGCATCGTTAGTGATTA
Found at i:36468955 original size:18 final size:18
Alignment explanation
Indices: 36468902--36468955 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
36468892 ATTCACCTAA
* *
36468902 ACCCAATCCAAACCCAAGT
1 ACCCAA-CCCAACCCAATT
*
36468921 ATCCAACCCAACCCAATT
1 ACCCAACCCAACCCAATT
36468939 ACCCAACCCAACCCAAT
1 ACCCAACCCAACCCAAT
36468956 CATAAAAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
18 26 0.84
19 5 0.16
ACGTcount: A:0.41, C:0.46, G:0.02, T:0.11
Consensus pattern (18 bp):
ACCCAACCCAACCCAATT
Found at i:36469790 original size:36 final size:37
Alignment explanation
Indices: 36469736--36469809 Score: 141
Period size: 36 Copynumber: 2.0 Consensus size: 37
36469726 AAGTATAGAG
36469736 AAATTGCAAAAATTACCCTACTGGTAATTTTTGTGAA
1 AAATTGCAAAAATTACCCTACTGGTAATTTTTGTGAA
36469773 AAATTGC-AAAATTACCCTACTGGTAATTTTTGTGAA
1 AAATTGCAAAAATTACCCTACTGGTAATTTTTGTGAA
36469809 A
1 A
36469810 GTTTTTCTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 30 0.81
37 7 0.19
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.35
Consensus pattern (37 bp):
AAATTGCAAAAATTACCCTACTGGTAATTTTTGTGAA
Found at i:36474981 original size:26 final size:26
Alignment explanation
Indices: 36474950--36475169 Score: 217
Period size: 26 Copynumber: 8.5 Consensus size: 26
36474940 TCATAGTCAA
*
36474950 GTTGGTGAATTTGTTAGGTTTGCTC-G
1 GTTGGTTAATTTGTTAGGTTTGC-CAG
* * * *
36474976 GCTGGTTAATCTATTAGGTTCGCCAG
1 GTTGGTTAATTTGTTAGGTTTGCCAG
* *
36475002 GTTGGTTAATCTGCTAGGTTTGCCAG
1 GTTGGTTAATTTGTTAGGTTTGCCAG
*
36475028 GTTAGTTAATTTGTTAGGTTTGCCAG
1 GTTGGTTAATTTGTTAGGTTTGCCAG
**
36475054 GTTGGTTAATTTGTTAGGTTCACCAG
1 GTTGGTTAATTTGTTAGGTTTGCCAG
* ** *
36475080 GTTGGTTAATTTGTTAAGTTCACTAG
1 GTTGGTTAATTTGTTAGGTTTGCCAG
* * ** *
36475106 GTTGGTTAATCTATTAGGTTCACCAA
1 GTTGGTTAATTTGTTAGGTTTGCCAG
** *
36475132 GTTGGTTAACATGTTAGGTTTTCCAG
1 GTTGGTTAATTTGTTAGGTTTGCCAG
*
36475158 GTTTGTTAATTT
1 GTTGGTTAATTT
36475170 TTTGAAGTGT
Statistics
Matches: 162, Mismatches: 31, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
25 1 0.01
26 161 0.99
ACGTcount: A:0.19, C:0.11, G:0.26, T:0.43
Consensus pattern (26 bp):
GTTGGTTAATTTGTTAGGTTTGCCAG
Found at i:36498291 original size:17 final size:17
Alignment explanation
Indices: 36498271--36498367 Score: 60
Period size: 17 Copynumber: 5.7 Consensus size: 17
36498261 ATTTTAATAG
36498271 ATTTAATATTTAATTTA
1 ATTTAATATTTAATTTA
*
36498288 ATTTAATGTTT-ATCTTA
1 ATTTAATATTTAAT-TTA
* *
36498305 A--TAGTATTTCA-TTA
1 ATTTAATATTTAATTTA
*
36498319 ATTTAATATTAAAGTGATT-
1 ATTTAATATTTAA-T--TTA
*
36498338 ATATTAATATTAAATTTA
1 AT-TTAATATTTAATTTA
*
36498356 ATTTAATGTTTA
1 ATTTAATATTTA
36498368 TCTCGTAGAT
Statistics
Matches: 62, Mismatches: 8, Indels: 20
0.69 0.09 0.22
Matches are distributed among these distances:
14 4 0.06
15 6 0.10
16 10 0.16
17 24 0.39
18 2 0.03
19 3 0.05
20 13 0.21
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (17 bp):
ATTTAATATTTAATTTA
Found at i:36498410 original size:62 final size:59
Alignment explanation
Indices: 36498341--36498457 Score: 180
Period size: 62 Copynumber: 1.9 Consensus size: 59
36498331 AGTGATTATA
* * *
36498341 TTAATATTAAATTTAATTTAATGTTTATCTCGTAGATAAATATTCTATTAATTTAATAAGAC
1 TTAATATTAAATTTAATCTAATATTTATCT--T-GATAAATATTATATTAATTTAATAAGAC
36498403 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
36498458 TTAAAGTGAT
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
59 23 0.44
60 1 0.02
62 28 0.54
ACGTcount: A:0.42, C:0.05, G:0.04, T:0.49
Consensus pattern (59 bp):
TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATAAGAC
Found at i:36501935 original size:13 final size:14
Alignment explanation
Indices: 36501911--36501960 Score: 59
Period size: 13 Copynumber: 3.6 Consensus size: 14
36501901 AATTCCACTA
36501911 AAAATTTAAAAAATT
1 AAAA-TTAAAAAATT
*
36501926 AAGA-TAAAAAATT
1 AAAATTAAAAAATT
*
36501939 AAAATTAAAAAA-G
1 AAAATTAAAAAATT
36501952 AAAATTAAA
1 AAAATTAAA
36501961 GAAAAATTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
13 21 0.68
14 7 0.23
15 3 0.10
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (14 bp):
AAAATTAAAAAATT
Found at i:36501944 original size:19 final size:19
Alignment explanation
Indices: 36501920--36501960 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
36501910 AAAAATTTAA
*
36501920 AAAATTAAGATAA-AAAATT
1 AAAATTAA-AAAAGAAAATT
36501939 AAAATTAAAAAAGAAAATT
1 AAAATTAAAAAAGAAAATT
36501958 AAA
1 AAA
36501961 GAAAAATTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 3 0.15
19 17 0.85
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (19 bp):
AAAATTAAAAAAGAAAATT
Found at i:36502919 original size:2 final size:2
Alignment explanation
Indices: 36502912--36502961 Score: 52
Period size: 2 Copynumber: 26.5 Consensus size: 2
36502902 ATTTAAATTA
* * *
36502912 AT AT AT AT TT AT A- AT -T AA AT AT -T AA AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36502951 AT AT AT AT AT A
1 AT AT AT AT AT A
36502962 AACACTAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
1 3 0.08
2 36 0.92
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:36502921 original size:16 final size:16
Alignment explanation
Indices: 36502900--36502933 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
36502890 AAAATATTAA
36502900 ATATTTA-AATTAATAT
1 ATATTTATAATTAA-AT
36502916 ATATTTATAATTAAAT
1 ATATTTATAATTAAAT
36502932 AT
1 AT
36502934 TAAATATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATATTTATAATTAAAT
Found at i:36502953 original size:37 final size:37
Alignment explanation
Indices: 36502891--36502962 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
36502881 AAATTAACAA
* *
36502891 AAATATTAAATATTTAAATTAATATATATTTATAATT
1 AAATATTAAATATATAAATTAATATATATATATAATT
*
36502928 AAATATTAAATATATATA-TATATATATATATATAA
1 AAATATTAAATATATAAATTA-ATATATATATATAA
36502963 ACACTAAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
36 2 0.06
37 29 0.94
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (37 bp):
AAATATTAAATATATAAATTAATATATATATATAATT
Found at i:36502971 original size:33 final size:30
Alignment explanation
Indices: 36502905--36502973 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 30
36502895 ATTAAATATT
* * *
36502905 TAAAT-TAATATATATTTATAATTAAATAT
1 TAAATATAATATATATATATAATTAAACAC
36502934 TAAATATATATATATATATATATATATAAACAC
1 TAAATATA-ATATATATATATA-AT-TAAACAC
36502967 TAAATAT
1 TAAATAT
36502974 TAACGTGGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 5 0.15
30 2 0.06
31 12 0.36
32 2 0.06
33 12 0.36
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (30 bp):
TAAATATAATATATATATATAATTAAACAC
Found at i:36503948 original size:38 final size:39
Alignment explanation
Indices: 36503856--36503964 Score: 175
Period size: 39 Copynumber: 2.8 Consensus size: 39
36503846 CCAATTACCA
*
36503856 ACCCAACCCAATAAAACTAAAACTAAAGTCTACCCAATT
1 ACCCAACACAATAAAACTAAAACTAAAGTCTACCCAATT
*
36503895 ACCCAACACAATAAAACTAAAACTAAAGTCTACTCAATT
1 ACCCAACACAATAAAACTAAAACTAAAGTCTACCCAATT
* *
36503934 A-CCAACTCAATAAAAATAAAACTAAAGTCTA
1 ACCCAACACAATAAAACTAAAACTAAAGTCTA
36503965 ACTCTTAAGT
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 28 0.42
39 38 0.58
ACGTcount: A:0.52, C:0.26, G:0.03, T:0.19
Consensus pattern (39 bp):
ACCCAACACAATAAAACTAAAACTAAAGTCTACCCAATT
Found at i:36504113 original size:37 final size:37
Alignment explanation
Indices: 36504086--36504160 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
36504076 TGTTAATTTC
* *
36504086 AAGAATTATATAATGTTTTTAATTATGTAGTGATTCA
1 AAGAATTATATAATATTTTTAATTATGTAGTAATTCA
* * *
36504123 AAGACTTATATAATATTTTTAATTATGTAATGATTCA
1 AAGAATTATATAATATTTTTAATTATGTAGTAATTCA
36504160 A
1 A
36504161 TTTGGGTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.40, C:0.04, G:0.11, T:0.45
Consensus pattern (37 bp):
AAGAATTATATAATATTTTTAATTATGTAGTAATTCA
Found at i:36507707 original size:9 final size:9
Alignment explanation
Indices: 36507664--36507738 Score: 55
Period size: 10 Copynumber: 7.9 Consensus size: 9
36507654 TAAAAAATAT
36507664 ATTTTTATAAA
1 ATTTTTAT--A
*
36507675 ATTATTATA
1 ATTTTTATA
*
36507684 ATTATTTAAA
1 ATT-TTTATA
36507694 TATTTTTATA
1 -ATTTTTATA
36507704 A-TTTTATGA
1 ATTTTTAT-A
*
36507713 GTTTTTA-A
1 ATTTTTATA
36507721 ATTCTTTATA
1 ATT-TTTATA
36507731 ATTTTTAT
1 ATTTTTAT
36507739 TTTTGAATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
8 9 0.17
9 15 0.29
10 18 0.35
11 10 0.19
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.60
Consensus pattern (9 bp):
ATTTTTATA
Found at i:36511448 original size:106 final size:108
Alignment explanation
Indices: 36511224--36511506 Score: 306
Period size: 106 Copynumber: 2.7 Consensus size: 108
36511214 TAAAGTTAAT
* * * * * *
36511224 GAAATTCTAAATAAACCAAACAAAACCCATCACTCATTTACAACTTTTTAGTCTTGCTTTCAGAA
1 GAAATTTTAAATAAACCAAACAAAACCAACCACTCATTTACAACTATTTAGTCTTCCATTCAGAA
* * * * * *
36511289 TGTATCAAACCATGGAGTCTGCAATTGCAATGTCAGAGTTGAT
66 TGTATCAAACCATGGAATCAGCAAATGCAATATCAGAGTTCAC
* * * *
36511332 GAAATTTTAAATAAACCAAACAAAACCAACCACTTATTTACTAC-ATTTGGTCTTCCATTCAGTA
1 GAAATTTTAAATAAACCAAACAAAACCAACCACTCATTTACAACTATTTAGTCTTCCATTCAGAA
* *
36511396 TGTATC-AACCATGGAATCAGCAAATGCAATATTATAGTTCAC
66 TGTATCAAACCATGGAATCAGCAAATGCAATATCAGAGTTCAC
* * * * * *
36511438 GAAATTTTAAATAAACCAAGC-AAACTC-ATCACTTATTCACAACT-TTTAGTCTTTCTTTCAGA
1 GAAATTTTAAATAAACCAAACAAAAC-CAACCACTCATTTACAACTATTTAGTCTTCCATTCAGA
36511500 ATGTATC
65 ATGTATC
36511507 GGCCATGTAG
Statistics
Matches: 147, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
105 38 0.26
106 49 0.33
107 21 0.14
108 39 0.27
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.32
Consensus pattern (108 bp):
GAAATTTTAAATAAACCAAACAAAACCAACCACTCATTTACAACTATTTAGTCTTCCATTCAGAA
TGTATCAAACCATGGAATCAGCAAATGCAATATCAGAGTTCAC
Found at i:36524036 original size:21 final size:21
Alignment explanation
Indices: 36524012--36524057 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
36524002 TGCTTTTTGC
*
36524012 CTTTAAACCTTTGTTTTATAA
1 CTTTAAACCCTTGTTTTATAA
*
36524033 CTTTAAACCCTTGTTTTATAC
1 CTTTAAACCCTTGTTTTATAA
36524054 CTTT
1 CTTT
36524058 TGATTGGTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.04, T:0.52
Consensus pattern (21 bp):
CTTTAAACCCTTGTTTTATAA
Found at i:36530694 original size:16 final size:18
Alignment explanation
Indices: 36530673--36530710 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
36530663 TAGGGGGAGG
*
36530673 GAATAAAA-AGTTGG-AT
1 GAATAAAATACTTGGAAT
36530689 GAATAAAATACTTGGAAT
1 GAATAAAATACTTGGAAT
36530707 GAAT
1 GAAT
36530711 TATTAGTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 5 0.26
18 6 0.32
ACGTcount: A:0.50, C:0.03, G:0.21, T:0.26
Consensus pattern (18 bp):
GAATAAAATACTTGGAAT
Found at i:36532940 original size:57 final size:57
Alignment explanation
Indices: 36532877--36532991 Score: 230
Period size: 57 Copynumber: 2.0 Consensus size: 57
36532867 ACTAAAATTT
36532877 AGGTAAGGAAATTAAAATTAGGTGTCTAGGAATTAATTTTCTTAAAACATATTTTAA
1 AGGTAAGGAAATTAAAATTAGGTGTCTAGGAATTAATTTTCTTAAAACATATTTTAA
36532934 AGGTAAGGAAATTAAAATTAGGTGTCTAGGAATTAATTTTCTTAAAACATATTTTAA
1 AGGTAAGGAAATTAAAATTAGGTGTCTAGGAATTAATTTTCTTAAAACATATTTTAA
36532991 A
1 A
36532992 AACAAAACCA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.43, C:0.05, G:0.16, T:0.37
Consensus pattern (57 bp):
AGGTAAGGAAATTAAAATTAGGTGTCTAGGAATTAATTTTCTTAAAACATATTTTAA
Found at i:36537530 original size:19 final size:18
Alignment explanation
Indices: 36537502--36537551 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
36537492 CTTACACATG
36537502 TATG-TTTTATTTCATTAT
1 TATGTTTTTATTT-ATTAT
36537520 TATGTTTTTATATTATTAT
1 TATGTTTTTAT-TTATTAT
*
36537539 TATTGTTATTATT
1 TA-TGTTTTTATT
36537552 ATAATAATCT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 4 0.14
19 14 0.50
20 10 0.36
ACGTcount: A:0.24, C:0.02, G:0.06, T:0.68
Consensus pattern (18 bp):
TATGTTTTTATTTATTAT
Found at i:36539530 original size:54 final size:53
Alignment explanation
Indices: 36539472--36539642 Score: 192
Period size: 54 Copynumber: 3.2 Consensus size: 53
36539462 ATAAAGAAAT
*
36539472 ATATATATATAGAAATTATAAAACATGTATGGAAAGTATAATATATATACGTAC
1 ATATATATATAGAAATTATAAAATATGTAT-GAAAGTATAATATATATACGTAC
* * * *
36539526 ATATATATAT--AAGTTAATAAATATATAGATCAT-AAAG-ATAAT-GAT-TACATAT
1 ATATATATATAGAAATT-ATAAA-ATAT-G-T-ATGAAAGTATAATATATATACGTAC
36539578 ATATATATATAGAAATTATAAAATATGTATAGAAAGTATAATATATATACGTAC
1 ATATATATATAGAAATTATAAAATATGTAT-GAAAGTATAATATATATACGTAC
36539632 ATATATATATA
1 ATATATATATA
36539643 AGTTAATAAA
Statistics
Matches: 96, Mismatches: 9, Indels: 24
0.74 0.07 0.19
Matches are distributed among these distances:
49 2 0.02
50 1 0.01
51 5 0.05
52 28 0.29
53 14 0.15
54 38 0.40
55 5 0.05
56 1 0.01
57 2 0.02
ACGTcount: A:0.51, C:0.04, G:0.09, T:0.36
Consensus pattern (53 bp):
ATATATATATAGAAATTATAAAATATGTATGAAAGTATAATATATATACGTAC
Found at i:36539582 original size:106 final size:106
Alignment explanation
Indices: 36539470--36539686 Score: 416
Period size: 106 Copynumber: 2.0 Consensus size: 106
36539460 GAATAAAGAA
*
36539470 ATATATATATATAGAAATTATAAAACATGTATGGAAAGTATAATATATATACGTACATATATATA
1 ATATATATATATAGAAATTATAAAACATGTATAGAAAGTATAATATATATACGTACATATATATA
36539535 TAAGTTAATAAATATATAGATCATAAAGATAATGATTACAT
66 TAAGTTAATAAATATATAGATCATAAAGATAATGATTACAT
*
36539576 ATATATATATATAGAAATTATAAAATATGTATAGAAAGTATAATATATATACGTACATATATATA
1 ATATATATATATAGAAATTATAAAACATGTATAGAAAGTATAATATATATACGTACATATATATA
36539641 TAAGTTAATAAATATATAGATCATAAAGATAATGATTACAT
66 TAAGTTAATAAATATATAGATCATAAAGATAATGATTACAT
36539682 ATATA
1 ATATA
36539687 AACTTAAAAA
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
106 109 1.00
ACGTcount: A:0.52, C:0.04, G:0.09, T:0.35
Consensus pattern (106 bp):
ATATATATATATAGAAATTATAAAACATGTATAGAAAGTATAATATATATACGTACATATATATA
TAAGTTAATAAATATATAGATCATAAAGATAATGATTACAT
Done.