Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 ID=Chr13-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58321163
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 747533 characters in sequence are not A, C, G, or T
File 120 of 199
Found at i:36539608 original size:20 final size:20
Alignment explanation
Indices: 36539580--36539626 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
36539570 TTACATATAT
*
36539580 ATATATATAGAAATTATAAA
1 ATATATATAGAAAGTATAAA
* *
36539600 ATATGTATAGAAAGTATAAT
1 ATATATATAGAAAGTATAAA
36539620 ATATATA
1 ATATATA
36539627 CGTACATATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (20 bp):
ATATATATAGAAAGTATAAA
Found at i:36539655 original size:52 final size:52
Alignment explanation
Indices: 36539474--36539640 Score: 189
Period size: 52 Copynumber: 3.2 Consensus size: 52
36539464 AAAGAAATAT
* *
36539474 ATATATATAGAAATTATAAAACATGTATGGAAAGTATAATATATATACGTAC
1 ATATATATAGAAATTATAAAATATGTATAGAAAGTATAATATATATACGTAC
* * * * *
36539526 ATATATATATAAGTTAATAAATATATAG-ATCATAAAG-ATAATGATTACATA--TAT
1 ATATATATAGAAATT-ATAAA-ATAT-GTAT-AGAAAGTATAAT-A-TATATACGTAC
36539580 ATATATATAGAAATTATAAAATATGTATAGAAAGTATAATATATATACGTAC
1 ATATATATAGAAATTATAAAATATGTATAGAAAGTATAATATATATACGTAC
36539632 ATATATATA
1 ATATATATA
36539641 TAAGTTAATA
Statistics
Matches: 93, Mismatches: 12, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
50 5 0.05
51 7 0.08
52 35 0.38
53 10 0.11
54 25 0.27
55 6 0.06
56 5 0.05
ACGTcount: A:0.51, C:0.04, G:0.09, T:0.35
Consensus pattern (52 bp):
ATATATATAGAAATTATAAAATATGTATAGAAAGTATAATATATATACGTAC
Found at i:36539673 original size:54 final size:55
Alignment explanation
Indices: 36539504--36539673 Score: 212
Period size: 54 Copynumber: 3.2 Consensus size: 55
36539494 ACATGTATGG
36539504 AAAGTATAATATATATACGTACATATATATATAAGTTAATAAATATATAGATCAT
1 AAAGTATAATATATATACGTACATATATATATAAGTTAATAAATATATAGATCAT
* * * * *
36539559 AAAG-ATAATGATTACATA--TATATATATATAGAAATT-ATAAA-ATAT-GTAT-AG
1 AAAGTATAAT-A-TATATACGTACATATATATATAAGTTAATAAATATATAG-ATCAT
36539610 AAAGTATAATATATATACGTACATATATATATAAGTTAATAAATATATAGATCAT
1 AAAGTATAATATATATACGTACATATATATATAAGTTAATAAATATATAGATCAT
36539665 AAAG-ATAAT
1 AAAGTATAAT
36539674 GATTACATAT
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
50 5 0.05
51 7 0.07
52 26 0.27
53 10 0.11
54 31 0.33
55 11 0.12
56 5 0.05
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.35
Consensus pattern (55 bp):
AAAGTATAATATATATACGTACATATATATATAAGTTAATAAATATATAGATCAT
Found at i:36551444 original size:46 final size:43
Alignment explanation
Indices: 36551342--36551446 Score: 111
Period size: 43 Copynumber: 2.4 Consensus size: 43
36551332 GGACCAATGA
* * * *
36551342 GAAAAACCGAAAAAGGCGTTTTGAGTTCTAAAAAAACTAACAT
1 GAAAACCCGCAAAGGGCGTTTTGAGTCCTAAAAAAACTAACAT
* * **
36551385 AAAAACCCACAAAGGGCGTTTTGAGTCCTTAAAAAAAGGCTAAGGT
1 GAAAACCCGCAAAGGGCGTTTTGAGTCC-TAAAAAAA--CTAACAT
36551431 GAAAACCCGCAAAGGG
1 GAAAACCCGCAAAGGG
36551447 TGCCTTAGAC
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
43 22 0.45
44 8 0.16
46 19 0.39
ACGTcount: A:0.45, C:0.17, G:0.21, T:0.17
Consensus pattern (43 bp):
GAAAACCCGCAAAGGGCGTTTTGAGTCCTAAAAAAACTAACAT
Found at i:36553083 original size:45 final size:44
Alignment explanation
Indices: 36552865--36553334 Score: 260
Period size: 44 Copynumber: 10.5 Consensus size: 44
36552855 CATAGCAAAC
* * * * *
36552865 CTTATCTCCCTGAAGATGCAGTGGAGCAGGTTAAAGCTACTAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAAT
* * * **
36552909 CATATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAACAATGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TACCAAT
* ** ** *
36552953 CCTATAC-CTTTGAAGTTGCAGTAGG-TTAGATTAAATATAGTATGA-CAAGT
1 CTTAT-CTCCCTGAAGTTGCAGT-GGAGCAGATT---GA-AG-AT-ACCAA-T
* * * * *
36553003 ATTATCTCCCTAAAGTTGCAGTGGAGTAGACTGAAGATAGCAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAA-T
* * *
36553048 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATAAAAAACATAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT----ACCA-AT
* * * * * * *
36553099 CTTATCTCTCTAAAGTTGCAGTAGAGCAGA-T-CATAT-CAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAAT
* * *
36553140 CTTATCTCCCTGAAGTTACAGTGGAGTAGGTTGAAGATACCAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAAT
* *
36553184 CCTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAAT
* * * * * * *
36553228 CCTATCTCTCTGAAGTTGCAGTAGAGCAGA-T-CATAT-CAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAAT
* * *
36553269 CTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGCA-ACTAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-ATACCAAT
* *
36553313 CATATCTCCCTAAAGTTGCAGT
1 CTTATCTCCCTGAAGTTGCAGT
36553335 ATTACGTTTT
Statistics
Matches: 327, Mismatches: 71, Indels: 56
0.72 0.16 0.12
Matches are distributed among these distances:
41 53 0.16
42 6 0.02
43 7 0.02
44 152 0.46
45 40 0.12
46 2 0.01
47 5 0.02
48 1 0.00
49 7 0.02
50 24 0.07
51 29 0.09
52 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACCAAT
Found at i:36553264 original size:129 final size:129
Alignment explanation
Indices: 36552731--36553334 Score: 532
Period size: 129 Copynumber: 4.5 Consensus size: 129
36552721 CCAATAATCC
* * * * * * *
36552731 TATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGTTA-CAAGTCTTATCCCCCTAAAGTTGCAGT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGATACCAA-TCATATCTCCCTGAAGTTGCAGT
* * * *
36552795 GGAACAGATTGAAGCTATAAATAAAAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAAATCATAG
65 GGAGCAGATTGAAG------ATAACA-ATCCTATCTCTCTGAAGTTGCAGTAGAGCAAATCATAT
36552860 CAAACCT
123 CAAACCT
* * * * *
36552867 TATCTCCCTGAAGATGCAGTGGAGCAGGTTAAAGCTACTAATCATATCTCCCTGAAGTTGCAGTG
1 TATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCATATCTCCCTGAAGTTGCAGTG
* * * * * *
36552932 GAGCAGATT-AAAACAATGAATCCTATAC-CTTTGAAGTTGCAGTAGGTTAGATTAAATATAGTA
66 GAGCAGATTGAAGATAA-CAATCCTAT-CTCTCTGAAGTTGCAGTA-G--AG--CAAAT-CA-TA
***
36552995 TGACAAGTAT
122 T--CAAACCT
* ** * * *
36553005 TATCTCCCTAAAGTTGCAGTGGAGTAGACTGAAGATAGCAAGTCTTATTTCCCTGAAGTTGCAGT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGATACCAA-TCATATCTCCCTGAAGTTGCAGT
* * * *
36553070 GGAACAGATTGAAGCTATAAAAAACATATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCATAT
65 GGAGCAGATTGAAG--AT----AACA-ATCCTATCTCTCTGAAGTTGCAGTAGAGCAAATCATAT
36553135 CAAACCT
123 CAAACCT
* * * *
36553142 TATCTCCCTGAAGTTACAGTGGAGTAGGTTGAAGATACCAATCCTATCTCCCTGAAGTTGCAGTG
1 TATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCATATCTCCCTGAAGTTGCAGTG
* * *
36553207 GAGCAGGTTGAAGATACCAATCCTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCAAACCT
66 GAGCAGATTGAAGATAACAATCCTATCTCTCTGAAGTTGCAGTAGAGCAAATCATATCAAACCT
* *
36553271 TATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGCA-ACTAATCATATCTCCCTAAAGTTGCAGT
1 TATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAG-ATACCAATCATATCTCCCTGAAGTTGCAGT
36553335 ATTACGTTTT
Statistics
Matches: 382, Mismatches: 63, Indels: 53
0.77 0.13 0.11
Matches are distributed among these distances:
129 123 0.32
130 7 0.02
132 2 0.01
134 6 0.02
135 3 0.01
136 96 0.25
137 42 0.11
138 36 0.09
139 33 0.09
140 3 0.01
141 3 0.01
142 1 0.00
143 2 0.01
145 3 0.01
146 22 0.06
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (129 bp):
TATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCATATCTCCCTGAAGTTGCAGTG
GAGCAGATTGAAGATAACAATCCTATCTCTCTGAAGTTGCAGTAGAGCAAATCATATCAAACCT
Found at i:36555607 original size:11 final size:11
Alignment explanation
Indices: 36555587--36555655 Score: 93
Period size: 11 Copynumber: 6.3 Consensus size: 11
36555577 GACCTGTCCC
36555587 ATATTAAATAT
1 ATATTAAATAT
*
36555598 ATATTTAATAT
1 ATATTAAATAT
*
36555609 ATATAAAATAT
1 ATATTAAATAT
*
36555620 ATATTTAATAT
1 ATATTAAATAT
*
36555631 ATATAAAATAT
1 ATATTAAATAT
*
36555642 ATATTTAATAT
1 ATATTAAATAT
36555653 ATA
1 ATA
36555656 ATTCGGGCCG
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 49 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
ATATTAAATAT
Found at i:36555617 original size:22 final size:22
Alignment explanation
Indices: 36555587--36555655 Score: 129
Period size: 22 Copynumber: 3.1 Consensus size: 22
36555577 GACCTGTCCC
*
36555587 ATATTAAATATATATTTAATAT
1 ATATAAAATATATATTTAATAT
36555609 ATATAAAATATATATTTAATAT
1 ATATAAAATATATATTTAATAT
36555631 ATATAAAATATATATTTAATAT
1 ATATAAAATATATATTTAATAT
36555653 ATA
1 ATA
36555656 ATTCGGGCCG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
ATATAAAATATATATTTAATAT
Found at i:36565865 original size:31 final size:32
Alignment explanation
Indices: 36565806--36565870 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
36565796 GGCAAATTAC
36565806 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
36565838 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
36565869 AA
1 AA
36565871 ATTATATAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.39
32 20 0.61
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:36572364 original size:22 final size:23
Alignment explanation
Indices: 36572320--36572363 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
36572310 CTACTATGAA
*
36572320 ATAAAAAAGTAAGCAATTATTTT
1 ATAAAAAAGTAAACAATTATTTT
36572343 ATAAAAAAG-AAACAA-TATTTT
1 ATAAAAAAGTAAACAATTATTTT
36572364 TGGAGGGGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 5 0.25
23 9 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (23 bp):
ATAAAAAAGTAAACAATTATTTT
Found at i:36578605 original size:19 final size:19
Alignment explanation
Indices: 36578583--36578621 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
36578573 CGTTTTGCTA
36578583 TTCTGT-TTCTATTCTCTTT
1 TTCTGTCTTCTATT-TCTTT
*
36578602 TTCTGTCTTTTATTTCTTT
1 TTCTGTCTTCTATTTCTTT
36578621 T
1 T
36578622 ATTTAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.05, C:0.18, G:0.05, T:0.72
Consensus pattern (19 bp):
TTCTGTCTTCTATTTCTTT
Found at i:36580239 original size:123 final size:124
Alignment explanation
Indices: 36579888--36580263 Score: 612
Period size: 125 Copynumber: 3.0 Consensus size: 124
36579878 TTAGGGTTTT
* **
36579888 TAGGTCCTGGAAGAAATAATTTTAAGTTGACGTTTCTGA-TCAAATAGTATAAAATCGCTTCTAG
1 TAGGTCATGGAAGAAATAATTTT-TTTTGACGTTTCTGAGT-AAATAGTATAAAATCGCTTCTAG
* *
36579952 CTGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGAACGCACTTTTGCTACAG
64 CTGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
* * *
36580013 TAGGTCATGGAAGAAATAATTTTTTTTTGATGTTTCTGAGGAAATAGTATAAAATCGCTTCTAGT
1 TAGGTCATGGAAGAAATAA-TTTTTTTTGACGTTTCTGAGTAAATAGTATAAAATCGCTTCTAGC
36580078 TGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
65 TGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
*
36580138 TAGGTCATGGAAGAAAT-ATTTTTTTTGACGTTTCTGAGTAAATAGTATAAAATCGCTTCTAGCA
1 TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAGTAAATAGTATAAAATCGCTTCTAGCT
* *
36580202 GGATGCTATTTGAGAAGAATTTGTGAAATCGTGCCCTCCTGGACGCGCTTTTGCTACAG
66 GGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
36580261 TAG
1 TAG
36580264 CATGTTTAGG
Statistics
Matches: 235, Mismatches: 14, Indels: 6
0.92 0.05 0.02
Matches are distributed among these distances:
123 102 0.43
124 1 0.00
125 128 0.54
126 4 0.02
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (124 bp):
TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAGTAAATAGTATAAAATCGCTTCTAGCT
GGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
Found at i:36583439 original size:70 final size:70
Alignment explanation
Indices: 36583304--36583782 Score: 829
Period size: 70 Copynumber: 6.9 Consensus size: 70
36583294 TAAGCTCATG
*
36583304 TTATTACATCAAATAATATCAAAATAACTC-AAAAAATTTCTATTTTAGTACATCAAATAAACTT
1 TTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTCTATTTTATTACATCAAATAAACTT
36583368 CTATT
66 CTATT
*
36583373 TTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTCTATTTTAGTACATCAAATAAACTT
1 TTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTCTATTTTATTACATCAAATAAACTT
36583438 CTATT
66 CTATT
* *
36583443 TTATTACATCAAATAATATCAAAATAACTCAAAAAATTTTCTATTTTAGTACATCAAATAAACTT
1 TTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTCTATTTTATTACATCAAATAAACTT
36583508 CTATT
66 CTATT
* * * *
36583513 TTATTACATCAAATAATATC-ATATTACATCAAATAAACTTCTATTTTATTACATCAAATAAACT
1 TTATTACATCAAATAATATCAAAATAAC-TCAAAAAAATTTCTATTTTATTACATCAAATAAACT
36583577 TCTATT
65 TCTATT
*
36583583 TTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTCTCTTTTATTACATCAAATAAACTT
1 TTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTCTATTTTATTACATCAAATAAACTT
36583648 CTATT
66 CTATT
36583653 TTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTCTATTTTATTACATCAAATAAACTT
1 TTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTCTATTTTATTACATCAAATAAACTT
*
36583718 GTATT
66 CTATT
*
36583723 TTATTACATCAAATAATATCAAAATAACTCAAAAAAA-TTCTATTTTATTACATAAAATAA
1 TTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTCTATTTTATTACATCAAATAA
36583783 TATCAAAATA
Statistics
Matches: 392, Mismatches: 15, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
69 57 0.15
70 330 0.84
71 5 0.01
ACGTcount: A:0.47, C:0.14, G:0.01, T:0.38
Consensus pattern (70 bp):
TTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTCTATTTTATTACATCAAATAAACTT
CTATT
Found at i:36583475 original size:45 final size:45
Alignment explanation
Indices: 36583426--36583792 Score: 157
Period size: 45 Copynumber: 8.0 Consensus size: 45
36583416 TTTTAGTACA
36583426 TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
1 TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
* * * ** *
36583471 TCAAA-AAATTTTCTATTTTAGTACATCAAATAA-ACTTCTATTTTA-
1 TCAAATAAA-CTTCTATTTTATTACATCAAATAATA--TCAAAATAAC
* * ** ** ** *
36583516 TTACATCAAA-TAATATCATATTACATCAAATAA-ACTTCTATTTTATTAC
1 TCAAAT-AAACTTCTATTTTATTACATCAAATAATA--TC-A--AAATAAC
36583565 ATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
1 -TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
* * * ** *
36583611 TCAAAAAAATTTCTCTTTTATTACATCAAATAA-ACTTCTATTTTATTAC
1 TCAAATAAACTTCTATTTTATTACATCAAATAATA--TC-A--AAATAAC
** * * * ** *
36583660 ATCAAAT-AA-TATC-A--AAATAAC-TCAAAAAAATTTCTATTTTATTAC
1 -TCAAATAAACT-TCTATTTTATTACATC-AAATAATATC-A--AAATAAC
*
36583705 ATCAAATAAACTTGTATTTTATTACATCAAATAATATCAAAATAAC
1 -TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
* *
36583751 TCAAA-AAAATTCTATTTTATTACATAAAATAATATCAAAATA
1 TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATA
36583793 TTCAAAATAT
Statistics
Matches: 245, Mismatches: 50, Indels: 55
0.70 0.14 0.16
Matches are distributed among these distances:
44 39 0.16
45 110 0.45
46 27 0.11
47 6 0.02
48 7 0.03
49 25 0.10
50 30 0.12
51 1 0.00
ACGTcount: A:0.47, C:0.14, G:0.01, T:0.38
Consensus pattern (45 bp):
TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
Found at i:36583557 original size:20 final size:21
Alignment explanation
Indices: 36583492--36583598 Score: 74
Period size: 25 Copynumber: 4.6 Consensus size: 21
36583482 TCTATTTTAG
36583492 TACATCAAATAAACTTCTATTTTAT
1 TACATCAAATAAACTTC----TTAT
*
36583517 TACATCAAAT-AA-TATCATAT
1 TACATCAAATAAACT-TCTTAT
36583537 TACATCAAATAAACTTCTATTTTAT
1 TACATCAAATAAACTTC----TTAT
36583562 TACATCAAATAAACTTCTATTTTAT
1 TACATCAAATAAACTTC----TTAT
36583587 TACATCAAATAA
1 TACATCAAATAA
36583599 TATCAAAATA
Statistics
Matches: 73, Mismatches: 2, Indels: 14
0.82 0.02 0.16
Matches are distributed among these distances:
20 13 0.18
21 4 0.05
22 1 0.01
23 1 0.01
24 4 0.05
25 50 0.68
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (21 bp):
TACATCAAATAAACTTCTTAT
Found at i:36584234 original size:18 final size:18
Alignment explanation
Indices: 36584211--36584250 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
36584201 GACTCGGAAA
*
36584211 AGGATACATATAAGGGTT
1 AGGATACATATAAGGGCT
36584229 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
36584247 AGGA
1 AGGA
36584251 AACGCACCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.40, C:0.07, G:0.30, T:0.23
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:36585119 original size:20 final size:20
Alignment explanation
Indices: 36585082--36585119 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36585072 TTTATTTTTA
*
36585082 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
36585102 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
36585120 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:36585882 original size:15 final size:15
Alignment explanation
Indices: 36585862--36585892 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
36585852 ATAATTATCT
36585862 AAAAATTCATAAATA
1 AAAAATTCATAAATA
*
36585877 AAAAATTCTTAAATA
1 AAAAATTCATAAATA
36585892 A
1 A
36585893 TATTTAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (15 bp):
AAAAATTCATAAATA
Found at i:36586124 original size:11 final size:12
Alignment explanation
Indices: 36586110--36586152 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
36586100 TTAAATATGG
36586110 ATTTGAGA-GAA
1 ATTTGAGAGGAA
36586121 ATTTTGA-AGGAA
1 A-TTTGAGAGGAA
36586133 A-TTGAGAGGAA
1 ATTTGAGAGGAA
36586144 ATTTGAGAG
1 ATTTGAGAG
36586153 AGGATTAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
10 4 0.14
11 8 0.29
12 16 0.57
ACGTcount: A:0.42, C:0.00, G:0.30, T:0.28
Consensus pattern (12 bp):
ATTTGAGAGGAA
Found at i:36587054 original size:30 final size:30
Alignment explanation
Indices: 36587017--36587124 Score: 112
Period size: 30 Copynumber: 3.6 Consensus size: 30
36587007 ATTGAGAAGC
36587017 ATTTTTATATTAATTATATTATGA-AAAAG
1 ATTTTTATATTAATTATATTATGAGAAAAG
* * * * *
36587046 AATGTTTATATTTATTGTATTATGATAAAAT
1 -ATTTTTATATTAATTATATTATGAGAAAAG
* **
36587077 ATTTTTACATTAATTACGTTATGAGAAAATG
1 ATTTTTATATTAATTATATTATGAGAAAA-G
36587108 -TTTTTATATTAATTATA
1 ATTTTTATATTAATTATA
36587125 GGAATAATAT
Statistics
Matches: 61, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
30 57 0.93
31 4 0.07
ACGTcount: A:0.40, C:0.02, G:0.08, T:0.50
Consensus pattern (30 bp):
ATTTTTATATTAATTATATTATGAGAAAAG
Found at i:36594350 original size:2 final size:2
Alignment explanation
Indices: 36594343--36594367 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
36594333 AAAAAGAGAA
36594343 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
36594368 CAATCTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:36596172 original size:42 final size:42
Alignment explanation
Indices: 36596120--36596370 Score: 348
Period size: 42 Copynumber: 6.0 Consensus size: 42
36596110 GTGCTTACAT
36596120 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGA
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGA
* *
36596162 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCACTTTGAAA
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGC-TT-AGA
*
36596206 AAAAAACGCCCCTAAAGATCATGTTCTTTAGCGGCGCTTA-A
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGA
* * *
36596247 AAAAAACGCCCCTAAAGATTATGTTCTTTAGCGGCGCCTAGA
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGA
* *
36596289 AACAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT-GTT
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG-A
*
36596331 CAAAAACGCCGCTAAA-AGT-AGTGTTCTTTAGCGGCGCTTA
1 AAAAAACGCCGCTAAAGA-TCA-TGTTCTTTAGCGGCGCTTA
36596371 TTTCACAAAC
Statistics
Matches: 189, Mismatches: 13, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
41 42 0.22
42 106 0.56
43 4 0.02
44 37 0.20
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (42 bp):
AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGA
Found at i:36596383 original size:127 final size:127
Alignment explanation
Indices: 36596120--36596370 Score: 375
Period size: 127 Copynumber: 2.0 Consensus size: 127
36596110 GTGCTTACAT
* *
36596120 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATG
1 AAAAAACGCCCCTAAAGATCATGTTCTTTAGCGGCGCCTAGAAAAAAACGCCGCTAAAGATCATG
36596185 TTCTTTAGCGGCACTTTGAAAAAAAAACGCCCCTAAAGATCATGTTCTTTAGCGGCGCTTAA
66 TTCTTTAGCGGCACTTTGAAAAAAAAACGCCCCTAAAGATCATGTTCTTTAGCGGCGCTTAA
* *
36596247 AAAAAACGCCCCTAAAGATTATGTTCTTTAGCGGCGCCTAGAAACAAACGCCGCTAAAGATCATG
1 AAAAAACGCCCCTAAAGATCATGTTCTTTAGCGGCGCCTAGAAAAAAACGCCGCTAAAGATCATG
* *** *
36596312 TTCTTTAGCGGCGC-TTG-TTCAAAAACGCCGCTAAA-AGT-AGTGTTCTTTAGCGGCGCTTA
66 TTCTTTAGCGGCACTTTGAAAAAAAAACGCCCCTAAAGA-TCA-TGTTCTTTAGCGGCGCTTA
36596371 TTTCACAAAC
Statistics
Matches: 113, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
124 2 0.02
125 34 0.30
126 3 0.03
127 74 0.65
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (127 bp):
AAAAAACGCCCCTAAAGATCATGTTCTTTAGCGGCGCCTAGAAAAAAACGCCGCTAAAGATCATG
TTCTTTAGCGGCACTTTGAAAAAAAAACGCCCCTAAAGATCATGTTCTTTAGCGGCGCTTAA
Found at i:36596807 original size:12 final size:12
Alignment explanation
Indices: 36596790--36596829 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
36596780 TTTTGAACCT
*
36596790 CTGCTTCTATTG
1 CTGCTTCTATCG
*
36596802 CTGCTTCTCTCG
1 CTGCTTCTATCG
*
36596814 CTGCTTCTCTCG
1 CTGCTTCTATCG
36596826 CTGC
1 CTGC
36596830 GGCCTCTGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.03, C:0.38, G:0.17, T:0.42
Consensus pattern (12 bp):
CTGCTTCTATCG
Found at i:36596846 original size:21 final size:21
Alignment explanation
Indices: 36596814--36596882 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
36596804 GCTTCTCTCG
*
36596814 CTGCTTCTCTCGCTGCGGCCT
1 CTGCTTCTCTCGCTGCAGCCT
* * *
36596835 CTGTTTGTCTCGCTGTAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
* *
36596856 CTGCTTCCCTCGCTGCCGCCT
1 CTGCTTCTCTCGCTGCAGCCT
36596877 CTGCTT
1 CTGCTT
36596883 TAAGTTGCTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.01, C:0.41, G:0.22, T:0.36
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:36601939 original size:18 final size:18
Alignment explanation
Indices: 36601918--36601978 Score: 77
Period size: 18 Copynumber: 3.4 Consensus size: 18
36601908 TGTATGCCCC
*
36601918 ATGTAAGTAATGTAAGCT
1 ATGTAAGTAATGTAAGAT
36601936 ATGTAAGTAATGTAAGAT
1 ATGTAAGTAATGTAAGAT
* * * *
36601954 ATTTAATTTATGTAAGTT
1 ATGTAAGTAATGTAAGAT
36601972 ATGTAAG
1 ATGTAAG
36601979 ATATTTAATT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.39, C:0.02, G:0.20, T:0.39
Consensus pattern (18 bp):
ATGTAAGTAATGTAAGAT
Found at i:36601948 original size:27 final size:27
Alignment explanation
Indices: 36601918--36602009 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
36601908 TGTATGCCCC
36601918 ATGTAAG-TAATGTAAGCTATGTAAGTA
1 ATGTAAGAT-ATGTAAGCTATGTAAGTA
* ** *
36601945 ATGTAAGATATTTAATTTATGTAAGTT
1 ATGTAAGATATGTAAGCTATGTAAGTA
* ** * *
36601972 ATGTAAGATATTTAATTTATGTAAATT
1 ATGTAAGATATGTAAGCTATGTAAGTA
*
36601999 ATGCAAGATAT
1 ATGTAAGATAT
36602010 TTAATTTACT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 57 0.98
28 1 0.02
ACGTcount: A:0.40, C:0.02, G:0.16, T:0.41
Consensus pattern (27 bp):
ATGTAAGATATGTAAGCTATGTAAGTA
Found at i:36601967 original size:36 final size:36
Alignment explanation
Indices: 36601927--36602265 Score: 159
Period size: 36 Copynumber: 9.4 Consensus size: 36
36601917 CATGTAAGTA
*
36601927 ATGTAAGCTATGTAAGTAATGTAAGATATTTAATTT
1 ATGTAAGTTATGTAAGTAATGTAAGATATTTAATTT
36601963 ATGT-A---A-GT---T-ATGTAAGATATTTAATTT
1 ATGTAAGTTATGTAAGTAATGTAAGATATTTAATTT
* * * ** *
36601990 ATGTAAATTATGCAAG-ATATTTAATTTACTTAATTT
1 ATGTAAGTTATGTAAGTA-ATGTAAGATATTTAATTT
* * ** * *
36602026 ATGTAAGTTATTTAATTAACT-TAATTTATGTAAGTT
1 ATGTAAGTTATGTAAGTAA-TGTAAGATATTTAATTT
* * * * * * * *
36602062 ATGCAAGATATTTAATTTATGTAAGTTATGTAAATT
1 ATGTAAGTTATGTAAGTAATGTAAGATATTTAATTT
* *
36602098 ACT-TAATTTATGTAAGTTATGTAAGATATTTAATTT
1 A-TGTAAGTTATGTAAGTAATGTAAGATATTTAATTT
* *
36602134 ACT-TAATTTATGTAAGTTAT-TCAAGATATTTAATTT
1 A-TGTAAGTTATGTAAGTAATGT-AAGATATTTAATTT
* * *
36602170 ATGTAAGTTATGTAAGATATTTAATTTATGTAAGTTATGTAAATT
1 ATGTAAGTTATGTAAG-----T-A---ATGTAAGATATTTAATTT
* * *
36602215 ACT-TAATTTATGTAAGTTATGTAAGTTATTTAATTT
1 A-TGTAAGTTATGTAAGTAATGTAAGATATTTAATTT
36602251 ATGTAAGTTATGTAA
1 ATGTAAGTTATGTAA
36602266 TTAACCAAAT
Statistics
Matches: 240, Mismatches: 35, Indels: 56
0.73 0.11 0.17
Matches are distributed among these distances:
27 22 0.09
28 2 0.01
31 3 0.01
32 2 0.01
35 5 0.02
36 173 0.72
37 3 0.01
40 1 0.00
41 1 0.00
45 26 0.11
46 2 0.01
ACGTcount: A:0.37, C:0.03, G:0.13, T:0.47
Consensus pattern (36 bp):
ATGTAAGTTATGTAAGTAATGTAAGATATTTAATTT
Found at i:36602010 original size:27 final size:27
Alignment explanation
Indices: 36601935--36602265 Score: 364
Period size: 27 Copynumber: 11.6 Consensus size: 27
36601925 TAATGTAAGC
*
36601935 TATGTAAGTAATGTAAGATATTTAATT
1 TATGTAAGTTATGTAAGATATTTAATT
36601962 TATGTAAGTTATGTAAGATATTTAATT
1 TATGTAAGTTATGTAAGATATTTAATT
* *
36601989 TATGTAAATTATGCAAGATATTTAATT
1 TATGTAAGTTATGTAAGATATTTAATT
*
36602016 TACT-TAATTTATGTAAGTTATTTAATTAACTTAATT
1 TA-TGTAAGTTATGTAAG--A--T-A-T---TTAATT
*
36602052 TATGTAAGTTATGCAAGATATTTAATT
1 TATGTAAGTTATGTAAGATATTTAATT
*
36602079 TATGTAAGTTATGTAA-ATTACTTAATT
1 TATGTAAGTTATGTAAGA-TATTTAATT
36602106 TATGTAAGTTATGTAAGATATTTAATTTACTTAATT
1 TATGTAAGTTATGTAAG--A--T-A--T--TTAATT
36602142 TATGTAAGTTAT-TCAAGATATTTAATT
1 TATGTAAGTTATGT-AAGATATTTAATT
36602169 TATGTAAGTTATGTAAGATATTTAATT
1 TATGTAAGTTATGTAAGATATTTAATT
*
36602196 TATGTAAGTTATGTAA-ATTACTTAATT
1 TATGTAAGTTATGTAAGA-TATTTAATT
*
36602223 TATGTAAGTTATGTAAGTTATTTAATT
1 TATGTAAGTTATGTAAGATATTTAATT
36602250 TATGTAAGTTATGTAA
1 TATGTAAGTTATGTAA
36602266 TTAACCAAAT
Statistics
Matches: 266, Mismatches: 13, Indels: 50
0.81 0.04 0.15
Matches are distributed among these distances:
26 2 0.01
27 204 0.77
28 2 0.01
29 2 0.01
30 2 0.01
31 5 0.02
32 4 0.02
33 1 0.00
34 2 0.01
35 2 0.01
36 40 0.15
ACGTcount: A:0.37, C:0.02, G:0.12, T:0.48
Consensus pattern (27 bp):
TATGTAAGTTATGTAAGATATTTAATT
Found at i:36602023 original size:63 final size:61
Alignment explanation
Indices: 36601956--36602265 Score: 330
Period size: 63 Copynumber: 5.2 Consensus size: 61
36601946 TGTAAGATAT
* *
36601956 TTAATTTATGTAAGTTATGTAAGATATTTAATTTATGTAAATTATGCAAGATATTTAATTTA
1 TTAATTTATGTAAGTTATGTAA-ATACTTAATTTATGTAAGTTATGCAAGATATTTAATTTA
* *
36602018 CTTAATTTATGTAAGTTATTTAATTAACTTAATTTATGTAAGTTATGCAAG--A--T-A--T-
1 -TTAATTTATGTAAGTTATGTAAAT-ACTTAATTTATGTAAGTTATGCAAGATATTTAATTTA
*
36602073 TTAATTTATGTAAGTTATGTAAATTACTTAATTTATGTAAGTTATGTAAGATATTTAATTTA
1 TTAATTTATGTAAGTTATGTAAA-TACTTAATTTATGTAAGTTATGCAAGATATTTAATTTA
* *
36602135 CTTAATTTATGTAAGTTAT-TCAAGATATTTAATTTATGTAAGTTATGTAAG--A--T-A--T-
1 -TTAATTTATGTAAGTTATGT-AA-ATACTTAATTTATGTAAGTTATGCAAGATATTTAATTTA
* *
36602190 TTAATTTATGTAAGTTATGTAAATTACTTAATTTATGTAAGTTATGTAAGTTATTTAATTTA
1 TTAATTTATGTAAGTTATGTAAA-TACTTAATTTATGTAAGTTATGCAAGATATTTAATTTA
*
36602252 TGTAAGTTATGTAA
1 T-TAATTTATGTAA
36602266 TTAACCAAAT
Statistics
Matches: 213, Mismatches: 10, Indels: 48
0.79 0.04 0.18
Matches are distributed among these distances:
53 1 0.00
54 90 0.42
55 2 0.01
56 4 0.02
58 4 0.02
59 4 0.02
61 4 0.02
62 3 0.01
63 100 0.47
64 1 0.00
ACGTcount: A:0.37, C:0.03, G:0.12, T:0.49
Consensus pattern (61 bp):
TTAATTTATGTAAGTTATGTAAATACTTAATTTATGTAAGTTATGCAAGATATTTAATTTA
Found at i:36602052 original size:90 final size:87
Alignment explanation
Indices: 36601956--36602265 Score: 413
Period size: 90 Copynumber: 3.6 Consensus size: 87
36601946 TGTAAGATAT
* *
36601956 TTAATTTATGTAAGTTATGTAAGATATTTAATTTATGTAAATTATGCAAGATATTTAATTTACTT
1 TTAATTTATGTAAGTTATGTAAGATATTTAATTTATGTAAGTTATGTAAGATA-TTAATTTA-TT
36602021 AATTTATGTAAGTTATTTAATTAAC
64 AATTTATGTAAGTTATTTAATT-AC
*
36602046 TTAATTTATGTAAGTTATGCAAGATATTTAATTTATGTAAGTTATGTAA-ATTACTTAATTTATG
1 TTAATTTATGTAAGTTATGTAAGATATTTAATTTATGTAAGTTATGTAAGA-TA-TTAATTTAT-
* *
36602110 TAAGTTATGTAAGATATTTAATTTAC
63 TAATTTATGTAAGTTATTTAA-TTAC
36602136 TTAATTTATGTAAGTTAT-TCAAGATATTTAATTTATGTAAGTTATGTAAG--A-T-A--T-TTA
1 TTAATTTATGTAAGTTATGT-AAGATATTTAATTTATGTAAGTTATGTAAGATATTAATTTATTA
*
36602193 ATTTATGTAAGTTATGTAAATTAC
65 ATTTATGTAAGTTAT-TTAATTAC
*
36602217 TTAATTTATGTAAGTTATGTAAGTTATTTAATTTATGTAAGTTATGTAA
1 TTAATTTATGTAAGTTATGTAAGATATTTAATTTATGTAAGTTATGTAA
36602266 TTAACCAAAT
Statistics
Matches: 202, Mismatches: 11, Indels: 23
0.86 0.05 0.10
Matches are distributed among these distances:
81 65 0.32
82 5 0.02
83 1 0.00
85 1 0.00
86 1 0.00
88 1 0.00
89 2 0.01
90 124 0.61
91 2 0.01
ACGTcount: A:0.37, C:0.03, G:0.12, T:0.49
Consensus pattern (87 bp):
TTAATTTATGTAAGTTATGTAAGATATTTAATTTATGTAAGTTATGTAAGATATTAATTTATTAA
TTTATGTAAGTTATTTAATTAC
Found at i:36602074 original size:117 final size:117
Alignment explanation
Indices: 36601935--36602265 Score: 524
Period size: 117 Copynumber: 2.8 Consensus size: 117
36601925 TAATGTAAGC
* * *
36601935 TATGTAAGTAATGTAAGATATTTAATTTATGTAAGTTATGTAAGA-TATTTAATTTATGTAAATT
1 TATGTAAGTTATGTAAGATATTTAATTTATGTAAGTTATGTAA-ATTACTTAATTTATGTAAGTT
* * *
36601999 ATGCAAGATATTTAATTTACTTAATTTATGTAAGTTATTTAA-TTAACTTAATT
65 ATGTAAGATATTTAATTTACTTAATTTATGTAAGTTATTCAAGAT-ACTTAATT
*
36602052 TATGTAAGTTATGCAAGATATTTAATTTATGTAAGTTATGTAAATTACTTAATTTATGTAAGTTA
1 TATGTAAGTTATGTAAGATATTTAATTTATGTAAGTTATGTAAATTACTTAATTTATGTAAGTTA
*
36602117 TGTAAGATATTTAATTTACTTAATTTATGTAAGTTATTCAAGATATTTAATT
66 TGTAAGATATTTAATTTACTTAATTTATGTAAGTTATTCAAGATACTTAATT
36602169 TATGTAAGTTATGTAAGATATTTAATTTATGTAAGTTATGTAAATTACTTAATTTATGTAAGTTA
1 TATGTAAGTTATGTAAGATATTTAATTTATGTAAGTTATGTAAATTACTTAATTTATGTAAGTTA
* *
36602234 TGTAAGTTATTTAATTTA-TGTAAGTTATGTAA
66 TGTAAGATATTTAATTTACT-TAATTTATGTAA
36602266 TTAACCAAAT
Statistics
Matches: 200, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
116 2 0.01
117 197 0.99
118 1 0.00
ACGTcount: A:0.37, C:0.02, G:0.12, T:0.48
Consensus pattern (117 bp):
TATGTAAGTTATGTAAGATATTTAATTTATGTAAGTTATGTAAATTACTTAATTTATGTAAGTTA
TGTAAGATATTTAATTTACTTAATTTATGTAAGTTATTCAAGATACTTAATT
Found at i:36610852 original size:3 final size:3
Alignment explanation
Indices: 36610844--36610871 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
36610834 GTGATTGGCT
36610844 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
36610872 AGCTTCTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:36611511 original size:2 final size:2
Alignment explanation
Indices: 36611504--36611537 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
36611494 GAATACTTCA
36611504 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36611538 TTAACTTCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36617298 original size:2 final size:2
Alignment explanation
Indices: 36617293--36617339 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
36617283 AAAAAAATAA
36617293 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
36617335 GT AT A
1 AT AT A
36617340 AGACAACCCG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:36621491 original size:19 final size:19
Alignment explanation
Indices: 36621451--36621492 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
36621441 TGTATTCTAA
*
36621451 ATATTGTATAAAATCATGT
1 ATATTGTATAAAATCATAT
* *
36621470 ATATTGTATGAAATTATAT
1 ATATTGTATAAAATCATAT
36621489 ATAT
1 ATAT
36621493 ATATATTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.43, C:0.02, G:0.10, T:0.45
Consensus pattern (19 bp):
ATATTGTATAAAATCATAT
Found at i:36633438 original size:27 final size:27
Alignment explanation
Indices: 36633400--36633670 Score: 255
Period size: 27 Copynumber: 10.2 Consensus size: 27
36633390 GATTCTTGGG
* *
36633400 AAAATAACCGAAATACCCCCGAAAGGT
1 AAAATGACCGAAATACCCCCGAAGGGT
* *
36633427 AAAATGATCGAAATACCCTCGAAGGGT
1 AAAATGACCGAAATACCCCCGAAGGGT
* *
36633454 AAAATGATCGAAATACCCTCGAAGGGT
1 AAAATGACCGAAATACCCCCGAAGGGT
** * *
36633481 AAAATGACTAAAATACCCTCAAAGGGT
1 AAAATGACCGAAATACCCCCGAAGGGT
** *
36633508 AAAATGATTGAAATACCCCAGAAGGGT
1 AAAATGACCGAAATACCCCCGAAGGGT
* *
36633535 -AAATGACCGAAATACCTCAG-AGGAGT
1 AAAATGACCGAAATACCCCCGAAGG-GT
*
36633561 AAAATAACCGAAATACCCCCGAAGGGT
1 AAAATGACCGAAATACCCCCGAAGGGT
***
36633588 -AAATGACCGAAATACCTTTGAA-GGT
1 AAAATGACCGAAATACCCCCGAAGGGT
* * **
36633613 AAAATAACTGAAATA-CCCTAAAGGGT
1 AAAATGACCGAAATACCCCCGAAGGGT
* * * *
36633639 AACATGACCGAAATACCTCTGAAGGGC
1 AAAATGACCGAAATACCCCCGAAGGGT
36633666 AAAAT
1 AAAAT
36633671 AACTGTTATA
Statistics
Matches: 203, Mismatches: 35, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
25 10 0.05
26 64 0.32
27 126 0.62
28 3 0.01
ACGTcount: A:0.44, C:0.20, G:0.19, T:0.17
Consensus pattern (27 bp):
AAAATGACCGAAATACCCCCGAAGGGT
Found at i:36633563 original size:53 final size:52
Alignment explanation
Indices: 36633400--36633673 Score: 275
Period size: 53 Copynumber: 5.2 Consensus size: 52
36633390 GATTCTTGGG
* * *
36633400 AAAATAACCGAAATACCCCCGAAAGGTAAAATGATCGAAATACCCTC-GAAGGGT
1 AAAATAACCGAAATACCCCAGAAGGGT-AAATGACCGAAATA-CCTCAG-AGGGT
* * ** *
36633454 AAAATGATCGAAATACCCTC-GAAGGGTAAAATGACTAAAATACCCTCAAAGGGT
1 AAAATAACCGAAATACCC-CAGAAGGGT-AAATGACCGAAATA-CCTCAGAGGGT
* **
36633508 AAAATGATTGAAATACCCCAGAAGGGTAAATGACCGAAATACCTCAGAGGAGT
1 AAAATAACCGAAATACCCCAGAAGGGTAAATGACCGAAATACCTCAGAGG-GT
* ** *
36633561 AAAATAACCGAAATACCCCCGAAGGGTAAATGACCGAAATACCTTTGAAGGT
1 AAAATAACCGAAATACCCCAGAAGGGTAAATGACCGAAATACCTCAGAGGGT
* * * *
36633613 AAAATAACTGAAATACCCTA-AAGGGTAACATGACCGAAATACCTCTGAAGGGC
1 AAAATAACCGAAATACCCCAGAAGGGTAA-ATGACCGAAATACCTCAG-AGGGT
36633666 AAAATAAC
1 AAAATAAC
36633674 TGTTATACCC
Statistics
Matches: 190, Mismatches: 24, Indels: 13
0.84 0.11 0.06
Matches are distributed among these distances:
51 8 0.04
52 44 0.23
53 69 0.36
54 68 0.36
55 1 0.01
ACGTcount: A:0.45, C:0.20, G:0.19, T:0.17
Consensus pattern (52 bp):
AAAATAACCGAAATACCCCAGAAGGGTAAATGACCGAAATACCTCAGAGGGT
Found at i:36635822 original size:47 final size:48
Alignment explanation
Indices: 36635750--36635847 Score: 114
Period size: 47 Copynumber: 2.0 Consensus size: 48
36635740 CTTTTAATTT
* *
36635750 TTTTTATACATTACAATCATATATTAGCGT-TAAATTTCATTATGTATTA
1 TTTTTATACATTACAATCATATATTAACATATAAATTT--TTATGTATTA
36635799 TTTTTA-A-ATTACAAT-ATATTATTAACATCATAAATTTTTATGTATTA
1 TTTTTATACATTACAATCATA-TATTAACAT-ATAAATTTTTATGTATTA
36635846 TT
1 TT
36635848 AGATTAGATT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
46 3 0.07
47 27 0.61
48 1 0.02
49 13 0.30
ACGTcount: A:0.37, C:0.08, G:0.04, T:0.51
Consensus pattern (48 bp):
TTTTTATACATTACAATCATATATTAACATATAAATTTTTATGTATTA
Found at i:36640744 original size:22 final size:22
Alignment explanation
Indices: 36640719--36640762 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
36640709 TCAGAGTAAA
36640719 AAAAAATAAAAA-GTGAAAAATG
1 AAAAAATAAAAAGGT-AAAAATG
*
36640741 AAAAAATGAAAAGGTAAAAATG
1 AAAAAATAAAAAGGTAAAAATG
36640763 GAGAGGCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.70, C:0.00, G:0.16, T:0.14
Consensus pattern (22 bp):
AAAAAATAAAAAGGTAAAAATG
Found at i:36642067 original size:44 final size:43
Alignment explanation
Indices: 36642019--36642773 Score: 181
Period size: 44 Copynumber: 17.2 Consensus size: 43
36642009 GACAACGGAT
*
36642019 CTTGCCTTCCTGCATTGACAGCGAAGCAAATCGAAGACACAAGC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACA-AAGC
** * * * * * *
36642063 CTTGCC-TCTCT-CTATT-TTAGTGGAGCTGGTTGAAGACAACAGAT
1 CTTGCCTTC-CTGC-ATTGACAGCGAAGCAGATCGAAGACAA-AG-C
*
36642107 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAGAAGC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACA-AAGC
* * * * * * * *
36642151 CTTGCC-TCTCT-CGGTTG-TAGTGGAGCTGGTTGAAGACAACAGAT
1 CTTGCCTTC-CTGC-ATTGACAGCGAAGCAGATCGAAGACAA-AG-C
* *
36642195 CTTGCCTTCCTGCGTTGACAGCGAAGCAGATCAAAGACACAAGC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACA-AAGC
* * * * ** * * *
36642239 CTTACC-TCTCT-CGGTTG-TAGCGGAGTTGGTTGAAGACAACAGAT
1 CTTGCCTTC-CTGC-ATTGACAGCGAAGCAGATCGAAGACAA-AG-C
* *
36642283 CTTGCCTTCCTACATTGACAGCGAAGTAGATCGAAGACACAAGC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACA-AAGC
* * * * ** * * * * *
36642327 CTTGCCTCCCT-CGGTTG-TAG-TAGAGTTGGTTGAAGATAGCAGAT
1 CTTGCCTTCCTGC-ATTGACAGCGA-AGCAGATCGAAGACA-AAG-C
* * *
36642371 CTTGCCTTCCTGCATTGACAGTGAAGGAGATCAAAGACACAAGC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACA-AAGC
* * * * * * * **
36642415 CTTGCC-TCTCT-CGGTTG-TAGTGGAGCTGGTTGAAGACAACAAAT
1 CTTGCCTTC-CTGC-ATTGACAGCGAAGCAGATCGAAGAC-A-AAGC
* *
36642459 CTTGCCTTCCTGCATTGACAGGGAAGCAGATCGAAGATACAAGC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACA-AAGC
* * * * * * * *
36642503 CTTGCC-TCTCT-CGGTTG-TAGTGGAGCTGGTTGAAGACAACAGAT
1 CTTGCCTTC-CTGC-ATTGACAGCGAAGCAGATCGAAGACAA-AG-C
* *
36642547 CTTGCATTCCTGCATTGACAGCAAAGCAGATCGAAGACACAAGC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACA-AAGC
* * * * * * * * *
36642591 CTTGCC-TCTCT-CGGTTG-TAGTGGATCTGGTTGAAGACAACAGAT
1 CTTGCCTTC-CTGC-ATTGACAGCGAAGCAGATCGAAGACAA-AG-C
* *
36642635 CTTGCCTTCCTGCATTGACAGTGAAGAAGATCGAAGACACAAGC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACA-AAGC
* * * * * * *
36642679 CTTGCC-TCTCT-CGGTTG-TAGCGGAGCTGGTTGAAGACAACAGAT
1 CTTGCCTTC-CTGC-ATTGACAGCGAAGCAGATCGAAGACAA-AG-C
* * * *
36642723 CTTGCCTTCCTGCATCGACAGTGAAGCAAATCGAAGACATAGGC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACA-AAGC
36642767 CTTGCCT
1 CTTGCCT
36642774 CCCTCGGTTG
Statistics
Matches: 496, Mismatches: 155, Indels: 120
0.64 0.20 0.16
Matches are distributed among these distances:
42 7 0.01
43 145 0.29
44 192 0.39
45 145 0.29
46 7 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (43 bp):
CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAGC
Found at i:36642863 original size:88 final size:88
Alignment explanation
Indices: 36641917--36642862 Score: 1406
Period size: 88 Copynumber: 10.8 Consensus size: 88
36641907 AACAGATTAG
* * * *
36641917 TGAATACAGCAGATCTTGCCTTCCTGCATCGACAGGGAAGCAGATCGAAGACACAAGCCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCT
** * *
36641982 CTCTTAGTTGTAATGGAGTTGGT
66 CTCTCGGTTGTAGTGGAGCTGGT
* *
36642005 TGAAGACAACGGATCTTGCCTTCCTGCATTGACAGCGAAGCAAATCGAAGACACAAGCCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCT
** *
36642070 CTCTCTATTTTAGTGGAGCTGGT
66 CTCTCGGTTGTAGTGGAGCTGGT
* *
36642093 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAAACAGAAGCCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCT
36642158 CTCTCGGTTGTAGTGGAGCTGGT
66 CTCTCGGTTGTAGTGGAGCTGGT
* * *
36642181 TGAAGACAACAGATCTTGCCTTCCTGCGTTGACAGCGAAGCAGATCAAAGACACAAGCCTTACCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCT
* *
36642246 CTCTCGGTTGTAGCGGAGTTGGT
66 CTCTCGGTTGTAGTGGAGCTGGT
* *
36642269 TGAAGACAACAGATCTTGCCTTCCTACATTGACAGCGAAGTAGATCGAAGACACAAGCCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCT
* * *
36642334 CCCTCGGTTGTAGTAGAGTTGGT
66 CTCTCGGTTGTAGTGGAGCTGGT
* * * * *
36642357 TGAAGATAGCAGATCTTGCCTTCCTGCATTGACAGTGAAGGAGATCAAAGACACAAGCCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCT
36642422 CTCTCGGTTGTAGTGGAGCTGGT
66 CTCTCGGTTGTAGTGGAGCTGGT
* * *
36642445 TGAAGACAACAAATCTTGCCTTCCTGCATTGACAGGGAAGCAGATCGAAGATACAAGCCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCT
36642510 CTCTCGGTTGTAGTGGAGCTGGT
66 CTCTCGGTTGTAGTGGAGCTGGT
* *
36642533 TGAAGACAACAGATCTTGCATTCCTGCATTGACAGCAAAGCAGATCGAAGACACAAGCCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCT
*
36642598 CTCTCGGTTGTAGTGGATCTGGT
66 CTCTCGGTTGTAGTGGAGCTGGT
* *
36642621 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGTGAAGAAGATCGAAGACACAAGCCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCT
*
36642686 CTCTCGGTTGTAGCGGAGCTGGT
66 CTCTCGGTTGTAGTGGAGCTGGT
* * * * *
36642709 TGAAGACAACAGATCTTGCCTTCCTGCATCGACAGTGAAGCAAATCGAAGACATAGGCCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCT
* *
36642774 CCCTCGGTTGTAGTGGAGCAGGT
66 CTCTCGGTTGTAGTGGAGCTGGT
* * * * * * * *
36642797 TGAGGATAGCAGATCTTGCCTTCCTACATTGATAGTGAAGCAGATCGAAGATACAAGCCTTACCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCT
36642862 C
66 C
36642863 CTAGGCGATG
Statistics
Matches: 777, Mismatches: 81, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 777 1.00
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.25
Consensus pattern (88 bp):
TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCT
CTCTCGGTTGTAGTGGAGCTGGT
Found at i:36644523 original size:47 final size:48
Alignment explanation
Indices: 36644451--36644548 Score: 114
Period size: 47 Copynumber: 2.0 Consensus size: 48
36644441 ACTTTAATTT
* *
36644451 TTTTTATACATTACAATCATATATTAGCGT-TAAATTTCATTATGTATTA
1 TTTTTATACATTACAATCATATATTAACATATAAATTT--TTATGTATTA
36644500 TTTTTA-A-ATTACAAT-ATATTATTAACATCATAAATTTTTATGTATTA
1 TTTTTATACATTACAATCATA-TATTAACAT-ATAAATTTTTATGTATTA
36644547 TT
1 TT
36644549 AGATTAGATT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
46 3 0.07
47 27 0.61
48 1 0.02
49 13 0.30
ACGTcount: A:0.37, C:0.08, G:0.04, T:0.51
Consensus pattern (48 bp):
TTTTTATACATTACAATCATATATTAACATATAAATTTTTATGTATTA
Found at i:36649529 original size:146 final size:146
Alignment explanation
Indices: 36649265--36649557 Score: 586
Period size: 146 Copynumber: 2.0 Consensus size: 146
36649255 GCCTTGCAAT
36649265 AGTTACACCTTCTAGTTTAGATAGAAATGCAACATAATTATTTACATGATCATCTTCATACGCTT
1 AGTTACACCTTCTAGTTTAGATAGAAATGCAACATAATTATTTACATGATCATCTTCATACGCTT
36649330 CACTCTTAGAATCACCACTCCATGTCATATTATAAGATTTCTTCTTTTTCAGTGTGTTTACACAT
66 CACTCTTAGAATCACCACTCCATGTCATATTATAAGATTTCTTCTTTTTCAGTGTGTTTACACAT
36649395 TCTGCATGATTGTGTC
131 TCTGCATGATTGTGTC
36649411 AGTTACACCTTCTAGTTTAGATAGAAATGCAACATAATTATTTACATGATCATCTTCATACGCTT
1 AGTTACACCTTCTAGTTTAGATAGAAATGCAACATAATTATTTACATGATCATCTTCATACGCTT
36649476 CACTCTTAGAATCACCACTCCATGTCATATTATAAGATTTCTTCTTTTTCAGTGTGTTTACACAT
66 CACTCTTAGAATCACCACTCCATGTCATATTATAAGATTTCTTCTTTTTCAGTGTGTTTACACAT
36649541 TCTGCATGATTGTGTC
131 TCTGCATGATTGTGTC
36649557 A
1 A
36649558 ATACACTTCA
Statistics
Matches: 147, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
146 147 1.00
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (146 bp):
AGTTACACCTTCTAGTTTAGATAGAAATGCAACATAATTATTTACATGATCATCTTCATACGCTT
CACTCTTAGAATCACCACTCCATGTCATATTATAAGATTTCTTCTTTTTCAGTGTGTTTACACAT
TCTGCATGATTGTGTC
Found at i:36655927 original size:21 final size:21
Alignment explanation
Indices: 36655890--36655937 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
36655880 GAGAGGAAAA
*
36655890 TAAAATTGATTCAAGATAGAC
1 TAAAAGTGATTCAAGATAGAC
36655911 TAAAAGTGACTTC-AGATAGAC
1 TAAAAGTGA-TTCAAGATAGAC
36655932 -AAAAGT
1 TAAAAGT
36655938 TATGCAAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 6 0.24
21 16 0.64
22 3 0.12
ACGTcount: A:0.48, C:0.10, G:0.17, T:0.25
Consensus pattern (21 bp):
TAAAAGTGATTCAAGATAGAC
Found at i:36658073 original size:90 final size:90
Alignment explanation
Indices: 36657870--36658077 Score: 287
Period size: 90 Copynumber: 2.3 Consensus size: 90
36657860 GACAGTTTAT
*
36657870 CTGCAAACATTTGTGGTTTATCCACAAATTTACTACAGCTTTTATCTGCAAATCTATTGTGCATT
1 CTGCAAACACTTGTGGTTTATCCACAAATTTACTACAGCTTTTATCTGCAAATCTATTGTGCATT
36657935 CACAACCTACTGGCAGCGTATTAAC
66 CACAACCTACTGGCAGCGTATTAAC
* * * * * *
36657960 CTGCAAACACTGGTGGTTTATCCACAACTTTTACTAGCATCTTTTATTTGCAAA-CTCGTTGTGT
1 CTGCAAACACTTGTGGTTTATCCACAA-ATTTACTA-CAGCTTTTATCTGCAAATCT-ATTGTGC
36658024 ATTCACAA-CTACTGGCAGCGTATTAAC
63 ATTCACAACCTACTGGCAGCGTATTAAC
* *
36658051 TTGC-AACACTTGTGGTTCATCCACAAA
1 CTGCAAACACTTGTGGTTTATCCACAAA
36658078 CTGGACTGTC
Statistics
Matches: 104, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
90 45 0.43
91 31 0.30
92 28 0.27
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (90 bp):
CTGCAAACACTTGTGGTTTATCCACAAATTTACTACAGCTTTTATCTGCAAATCTATTGTGCATT
CACAACCTACTGGCAGCGTATTAAC
Found at i:36658076 original size:45 final size:44
Alignment explanation
Indices: 36657935--36658076 Score: 110
Period size: 45 Copynumber: 3.1 Consensus size: 44
36657925 ATTGTGCATT
* *
36657935 CACAACCTACTGGCAGCGTATTAACCTGCAAACACTGGTGGTTTATC
1 CACAA-CTACTGGCAGCGTATTAACTTGC-AACACTCGTGG-TTATC
* * * * * *
36657982 CACAACTTTTACTAGCATC-T-TTTATTTGCAA-ACTCGTTGTGTATT
1 CACAAC---TACTGGCAGCGTATTAACTTGCAACACTCGTGGT-TATC
*
36658027 CACAACTACTGGCAGCGTATTAACTTGCAACACTTGTGGTTCATC
1 CACAACTACTGGCAGCGTATTAACTTGCAACACTCGTGGTT-ATC
36658072 CACAA
1 CACAA
36658077 ACTGGACTGT
Statistics
Matches: 72, Mismatches: 15, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
42 8 0.11
43 1 0.01
44 11 0.15
45 29 0.40
46 3 0.04
47 11 0.15
48 1 0.01
49 8 0.11
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (44 bp):
CACAACTACTGGCAGCGTATTAACTTGCAACACTCGTGGTTATC
Found at i:36660044 original size:14 final size:17
Alignment explanation
Indices: 36660012--36660049 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
36660002 AACTATAAAG
36660012 TATATTATTAAATTAAT
1 TATATTATTAAATTAAT
36660029 TATATTA-TAAA-T-AT
1 TATATTATTAAATTAAT
36660043 TATATTA
1 TATATTA
36660050 AGAAATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.43
15 1 0.05
16 4 0.19
17 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATATTATTAAATTAAT
Found at i:36660286 original size:15 final size:17
Alignment explanation
Indices: 36660268--36660299 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
36660258 CAGAATAGAA
36660268 AGAA-CAAA-GAAACAG
1 AGAAGCAAACGAAACAG
36660283 AGAAGCAAACGAAACAG
1 AGAAGCAAACGAAACAG
36660300 GGGAAGAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 4 0.27
17 7 0.47
ACGTcount: A:0.62, C:0.16, G:0.22, T:0.00
Consensus pattern (17 bp):
AGAAGCAAACGAAACAG
Found at i:36660981 original size:6 final size:6
Alignment explanation
Indices: 36660966--36661049 Score: 114
Period size: 6 Copynumber: 14.0 Consensus size: 6
36660956 GTGAGGTAAG
* * * * *
36660966 TATTAA TATTAG TATTAA TATTAA TATTAA TATTAT TATTAT TATTAT
1 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT
*
36661014 TATTAT TATTAT TATTAT TATGAT TATTAT TATTAT
1 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT
36661050 GAGTGGGAAT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 73 1.00
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (6 bp):
TATTAT
Found at i:36661220 original size:24 final size:27
Alignment explanation
Indices: 36661193--36661263 Score: 69
Period size: 27 Copynumber: 2.8 Consensus size: 27
36661183 GTGAATTTGT
*
36661193 GAAATAATTATAG-ATTGAAAG-GTG-
1 GAAATAATGATAGAATTGAAAGTGTGA
*
36661217 GAAA-AATGATTGAATTGAAAGTGTGA
1 GAAATAATGATAGAATTGAAAGTGTGA
** *
36661243 GAAATTGTGATTGAATTGAAA
1 GAAATAATGATAGAATTGAAA
36661264 ATATATGTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
23 6 0.15
24 12 0.31
25 3 0.08
26 4 0.10
27 14 0.36
ACGTcount: A:0.45, C:0.00, G:0.25, T:0.30
Consensus pattern (27 bp):
GAAATAATGATAGAATTGAAAGTGTGA
Found at i:36668552 original size:3 final size:3
Alignment explanation
Indices: 36668519--36668593 Score: 105
Period size: 3 Copynumber: 25.0 Consensus size: 3
36668509 GTGAGGTAAG
* * * * *
36668519 TAT TAA TAT TAG TAT TAA TAT TAA TAA TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
36668567 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
36668594 GAGTGGGAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:36668764 original size:24 final size:27
Alignment explanation
Indices: 36668737--36668807 Score: 69
Period size: 27 Copynumber: 2.8 Consensus size: 27
36668727 GTGAATTTGT
*
36668737 GAAATAATTATAG-ATTGAAAG-GTG-
1 GAAATAATGATAGAATTGAAAGTGTGA
*
36668761 GAAA-AATGATTGAATTGAAAGTGTGA
1 GAAATAATGATAGAATTGAAAGTGTGA
** *
36668787 GAAATTGTGATTGAATTGAAA
1 GAAATAATGATAGAATTGAAA
36668808 ATATATGTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
23 6 0.15
24 12 0.31
25 3 0.08
26 4 0.10
27 14 0.36
ACGTcount: A:0.45, C:0.00, G:0.25, T:0.30
Consensus pattern (27 bp):
GAAATAATGATAGAATTGAAAGTGTGA
Found at i:36676728 original size:50 final size:50
Alignment explanation
Indices: 36676653--36676752 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
36676643 TATATTCATG
36676653 ACATTTTGAAACGTTTCGAGTTACAGAAACCATTGGTCGTCTACCTAGTA
1 ACATTTTGAAACGTTTCGAGTTACAGAAACCATTGGTCGTCTACCTAGTA
36676703 ACATTTTGAAACGTTTCGAGTTACAGAAACCATTGGTCGTCTACCTAGTA
1 ACATTTTGAAACGTTTCGAGTTACAGAAACCATTGGTCGTCTACCTAGTA
36676753 TTCCACCTAG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (50 bp):
ACATTTTGAAACGTTTCGAGTTACAGAAACCATTGGTCGTCTACCTAGTA
Found at i:36677290 original size:45 final size:45
Alignment explanation
Indices: 36677226--36677342 Score: 155
Period size: 45 Copynumber: 2.6 Consensus size: 45
36677216 TATATTACAT
* *
36677226 AGTTTGTTCTAACACATCTCATTTAAAACTAGAAAGTTTGTTCCA
1 AGTTTGTTCCAACACATCTCATTTAAAACTACAAAGTTTGTTCCA
* * *
36677271 AGTTTTTTCCAACACATCTCATTTAAAATTACAAAGTTTGTTCGA
1 AGTTTGTTCCAACACATCTCATTTAAAACTACAAAGTTTGTTCCA
* *
36677316 AATTTGTTCCAATA-ATTCTCATTTAAA
1 AGTTTGTTCCAACACA-TCTCATTTAAA
36677343 TTTCAAATTT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 1 0.02
45 62 0.98
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.40
Consensus pattern (45 bp):
AGTTTGTTCCAACACATCTCATTTAAAACTACAAAGTTTGTTCCA
Found at i:36680862 original size:13 final size:14
Alignment explanation
Indices: 36680824--36680864 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
36680814 ATGGGAGTAG
36680824 GATTCTGTATATCT
1 GATTCTGTATATCT
* *
36680838 G-TTATGTTTATCT
1 GATTCTGTATATCT
36680851 GATTCTG-ATATCT
1 GATTCTGTATATCT
36680864 G
1 G
36680865 TATCTAATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.20, C:0.12, G:0.17, T:0.51
Consensus pattern (14 bp):
GATTCTGTATATCT
Found at i:36682560 original size:32 final size:31
Alignment explanation
Indices: 36682461--36682571 Score: 102
Period size: 31 Copynumber: 3.5 Consensus size: 31
36682451 TTTGATCTTT
*
36682461 TTTAA-CCTTTTTTAAACACTAAAT-AAAGCCC
1 TTTAATCCTTTTTT-AACCCT-AATCAAAGCCC
* * *
36682492 TCTAATCCTTTTTTAACCCTAAACAAAACACC
1 TTTAATCCTTTTTTAACCCTAATCAAAGC-CC
*
36682524 -TTAATCCTTTTTTAGACCCTAATCATAGCCC
1 TTTAATCCTTTTTTA-ACCCTAATCAAAGCCC
36682555 TTTAATCCCTCTTTTTA
1 TTTAAT-CCT-TTTTTA
36682572 TTCAAACACT
Statistics
Matches: 65, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
30 2 0.03
31 28 0.43
32 26 0.40
33 3 0.05
34 6 0.09
ACGTcount: A:0.32, C:0.27, G:0.03, T:0.39
Consensus pattern (31 bp):
TTTAATCCTTTTTTAACCCTAATCAAAGCCC
Found at i:36682608 original size:32 final size:33
Alignment explanation
Indices: 36682567--36682628 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 33
36682557 TAATCCCTCT
* *
36682567 TTTTATTCAAACACTAAA-CTCTAACAAAACCC
1 TTTTATTCAAACACCAAATCCCTAACAAAACCC
* *
36682599 TTTTCTTCAAACCCCAAATCCCTAACAAAA
1 TTTTATTCAAACACCAAATCCCTAACAAAA
36682629 TCTTTTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 15 0.60
33 10 0.40
ACGTcount: A:0.42, C:0.31, G:0.00, T:0.27
Consensus pattern (33 bp):
TTTTATTCAAACACCAAATCCCTAACAAAACCC
Found at i:36683011 original size:6 final size:6
Alignment explanation
Indices: 36683000--36683038 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
36682990 TTCGATTTTC
36683000 TATTTG TATTTG T-TTTG TATTTG T-TTTG TATTTG TATTT
1 TATTTG TATTTG TATTTG TATTTG TATTTG TATTTG TATTT
36683039 AGGTTTTGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 10 0.32
6 21 0.68
ACGTcount: A:0.13, C:0.00, G:0.15, T:0.72
Consensus pattern (6 bp):
TATTTG
Found at i:36683018 original size:11 final size:11
Alignment explanation
Indices: 36683002--36683034 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
36682992 CGATTTTCTA
36683002 TTTGTATTTGT
1 TTTGTATTTGT
36683013 TTTGTATTTGT
1 TTTGTATTTGT
36683024 TTTGTATTTGT
1 TTTGTATTTGT
36683035 ATTTAGGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.09, C:0.00, G:0.18, T:0.73
Consensus pattern (11 bp):
TTTGTATTTGT
Found at i:36683020 original size:17 final size:16
Alignment explanation
Indices: 36682995--36683038 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 16
36682985 TCTTTTTCGA
*
36682995 TTTTCTATTTGTATTTG
1 TTTTGTATTTGT-TTTG
36683012 TTTTGTATTTGTTTTG
1 TTTTGTATTTGTTTTG
36683028 TATTTGTATTT
1 T-TTTGTATTT
36683039 AGGTTTTGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 5 0.20
17 20 0.80
ACGTcount: A:0.11, C:0.02, G:0.14, T:0.73
Consensus pattern (16 bp):
TTTTGTATTTGTTTTG
Found at i:36683936 original size:21 final size:21
Alignment explanation
Indices: 36683910--36683953 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
36683900 TTTTGTTGAA
36683910 TTTAAAATATTTTTGACTATT
1 TTTAAAATATTTTTGACTATT
36683931 TTTAAAATATTTTTGACTATT
1 TTTAAAATATTTTTGACTATT
36683952 TT
1 TT
36683954 CTGAACATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (21 bp):
TTTAAAATATTTTTGACTATT
Found at i:36684792 original size:17 final size:16
Alignment explanation
Indices: 36684757--36684806 Score: 57
Period size: 16 Copynumber: 3.0 Consensus size: 16
36684747 TTAATTTTTT
*
36684757 TTAAATATTAAATAAAA
1 TTAAAAATT-AATAAAA
36684774 TTCAAAAAGTTAA-AAAA
1 TT-AAAAA-TTAATAAAA
36684791 TTAAAAATTAATAAAA
1 TTAAAAATTAATAAAA
36684807 AGCATTTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
15 4 0.14
16 9 0.31
17 8 0.28
18 6 0.21
19 2 0.07
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (16 bp):
TTAAAAATTAATAAAA
Found at i:36684807 original size:17 final size:16
Alignment explanation
Indices: 36684757--36684807 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 16
36684747 TTAATTTTTT
*
36684757 TTAAATATTAAATAAAA
1 TTAAAAATTAAA-AAAA
36684774 TTCAAAAAGTT-AAAAAA
1 TT-AAAAA-TTAAAAAAA
36684791 TTAAAAATTAATAAAAA
1 TTAAAAATTAA-AAAAA
36684808 GCATTTAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
15 2 0.07
16 6 0.21
17 13 0.45
18 6 0.21
19 2 0.07
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (16 bp):
TTAAAAATTAAAAAAA
Found at i:36684945 original size:10 final size:10
Alignment explanation
Indices: 36684930--36684966 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
36684920 TAGACTGTAT
36684930 AAAATTTTTA
1 AAAATTTTTA
*
36684940 AAAATTATT-
1 AAAATTTTTA
36684949 AAAATTTTTA
1 AAAATTTTTA
36684959 AAAATTTT
1 AAAATTTT
36684967 AATAAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (10 bp):
AAAATTTTTA
Found at i:36684952 original size:9 final size:9
Alignment explanation
Indices: 36684929--36684968 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
36684919 TTAGACTGTA
36684929 TAAAATTTT
1 TAAAATTTT
*
36684938 TAAAAATTAT
1 T-AAAATTTT
36684948 TAAAATTTT
1 TAAAATTTT
*
36684957 TAAAAATTT
1 TAAAATTTT
36684966 TAA
1 TAA
36684969 TAAAATATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 19 0.70
10 8 0.30
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
TAAAATTTT
Found at i:36684953 original size:19 final size:18
Alignment explanation
Indices: 36684929--36684968 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
36684919 TTAGACTGTA
36684929 TAAAATTTTTAAAAATTAT
1 TAAAATTTTTAAAAATT-T
36684948 TAAAATTTTTAAAAATTT
1 TAAAATTTTTAAAAATTT
36684966 TAA
1 TAA
36684969 TAAAATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TAAAATTTTTAAAAATTT
Found at i:36685216 original size:12 final size:12
Alignment explanation
Indices: 36685199--36685258 Score: 56
Period size: 12 Copynumber: 5.3 Consensus size: 12
36685189 TCTAGACTTA
36685199 ATTTTTAAATGG
1 ATTTTTAAATGG
*
36685211 ATTTTT--AT-T
1 ATTTTTAAATGG
* *
36685220 AATTTTAAAT-T
1 ATTTTTAAATGG
*
36685231 TTTTTTAAATGG
1 ATTTTTAAATGG
36685243 ATTTTTAAATGG
1 ATTTTTAAATGG
36685255 ATTT
1 ATTT
36685259 AAAAATCCAT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 5 0.13
10 2 0.05
11 11 0.28
12 21 0.54
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (12 bp):
ATTTTTAAATGG
Found at i:36689436 original size:13 final size:13
Alignment explanation
Indices: 36689418--36689469 Score: 56
Period size: 13 Copynumber: 4.1 Consensus size: 13
36689408 AGTCATTTTC
36689418 TCAATAAGAAAGA
1 TCAATAAGAAAGA
*
36689431 TCAATAAGAAA-T
1 TCAATAAGAAAGA
36689443 TCCAA-ATA-AAAGA
1 T-CAATA-AGAAAGA
36689456 TCAATAAGAAAGA
1 TCAATAAGAAAGA
36689469 T
1 T
36689470 ATTGTAATAC
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
12 9 0.28
13 23 0.72
ACGTcount: A:0.60, C:0.10, G:0.12, T:0.19
Consensus pattern (13 bp):
TCAATAAGAAAGA
Found at i:36689890 original size:18 final size:18
Alignment explanation
Indices: 36689862--36689906 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
36689852 CGTTCGTTTC
*
36689862 CAAAACATTATTC-ATTT
1 CAAAACGTTATTCAATTT
*
36689879 ACAAATCGTTATTCAATTT
1 -CAAAACGTTATTCAATTT
36689898 CAAAACGTT
1 CAAAACGTT
36689907 TTCTTATTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (18 bp):
CAAAACGTTATTCAATTT
Found at i:36692733 original size:11 final size:11
Alignment explanation
Indices: 36692719--36692762 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
36692709 AGATAAATAT
36692719 TATTTTATTAA
1 TATTTTATTAA
*
36692730 TATTTTAATGAGA
1 TATTTT-ATTA-A
*
36692743 TATTTTATTAT
1 TATTTTATTAA
36692754 TATTTTATT
1 TATTTTATT
36692763 TAGTATAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 15 0.54
12 6 0.21
13 7 0.25
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:36694741 original size:33 final size:33
Alignment explanation
Indices: 36694704--36694779 Score: 89
Period size: 33 Copynumber: 2.3 Consensus size: 33
36694694 ATTCTGATGA
* * *
36694704 TAAGACCATAACTGGGTTATGGCACTACAAATG
1 TAAGACCATAACAGGGTCATGGCAATACAAATG
** **
36694737 TAAGACCATGGCAGGGTCATGGCAATACATGTG
1 TAAGACCATAACAGGGTCATGGCAATACAAATG
36694770 TAAGACCATA
1 TAAGACCATA
36694780 GTTGGACTAT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (33 bp):
TAAGACCATAACAGGGTCATGGCAATACAAATG
Found at i:36696238 original size:206 final size:204
Alignment explanation
Indices: 36695785--36696348 Score: 890
Period size: 206 Copynumber: 2.8 Consensus size: 204
36695775 GGGGTGTTAC
* * *
36695785 AGATATTGACTACACATGTTGAGAAATTATGTTAGAATATGACTAATCAAAGGAAATTGGTGAAT
1 AGATATCGACTCCACATGTTGAGAAATTATGTGAGAATATGACTAATCAAAGGAAATTGGTGAAT
* *
36695850 TAAATTGTTTTTTTTTCTCATTCTCAATACATTATTTTAGATGCAATGTATGTAATGTGTGCTTT
66 GAAATTG-TTTTTTTTCTCATTCTCAATACATTATTTTAGATGCAATGAATGTAATGTGTGCTTT
* * * *
36695915 GAAAAATTTAAATTCCAAAAAG-----TCATTAAGAAATATTAATAAAAAATTCTAAATAAATGA
130 GAAAAATTCAAATTCCAAAAAGTCATTTCATTAAGAAAGATTAATAAAAAATTCCAAATAAAAGA
36695975 TCAATAAGAA
195 TCAATAAGAA
*
36695985 AGATATCGACTCCACATGTTGAGAAATTATGTGAGAATATAACTAATCAAAGGAAATTGGTGAAT
1 AGATATCGACTCCACATGTTGAGAAATTATGTGAGAATATGACTAATCAAAGGAAATTGGTGAAT
36696050 GAAATTG-TTTTTTTCTCATTCTCAATACATTATTTTAGATGCAATGAATGTAATGTGTGCTTTG
66 GAAATTGTTTTTTTTCTCATTCTCAATACATTATTTTAGATGCAATGAATGTAATGTGTGCTTTG
*
36696114 AAAAATTCAAATTCCAAAAAGTCATTTTCTCATTAAGAAAGATTAATAAGAAATTCCAAATAAAA
131 AAAAATTCAAATTCCAAAAAGTCA--TT-TCATTAAGAAAGATTAATAAAAAATTCCAAATAAAA
36696179 GATCAATAAGAA
193 GATCAATAAGAA
* *
36696191 AGATATCGACTCCACATATTGAGAAATTATGTGAGAATATGACTAATCGAAA-GAAATTAGTGAA
1 AGATATCGACTCCACATGTTGAGAAATTATGTGAGAATATGACTAATC-AAAGGAAATTGGTGAA
*
36696255 TGAAATTGTTTTTTTTTTCTCATTCTCAATACATTATTTTAGATGCAATGGATGTAATGTGTGCT
65 TGAAATTG--TTTTTTTTCTCATTCTCAATACATTATTTTAGATGCAATGAATGTAATGTGTGCT
36696320 TTGAAAAATTCAAATTCCAAAAAGTCATT
128 TTGAAAAATTCAAATTCCAAAAAGTCATT
36696349 GTTGTACCAT
Statistics
Matches: 337, Mismatches: 15, Indels: 17
0.91 0.04 0.05
Matches are distributed among these distances:
198 76 0.23
200 67 0.20
206 109 0.32
207 5 0.01
209 80 0.24
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.35
Consensus pattern (204 bp):
AGATATCGACTCCACATGTTGAGAAATTATGTGAGAATATGACTAATCAAAGGAAATTGGTGAAT
GAAATTGTTTTTTTTCTCATTCTCAATACATTATTTTAGATGCAATGAATGTAATGTGTGCTTTG
AAAAATTCAAATTCCAAAAAGTCATTTCATTAAGAAAGATTAATAAAAAATTCCAAATAAAAGAT
CAATAAGAA
Found at i:36696414 original size:86 final size:85
Alignment explanation
Indices: 36696297--36696457 Score: 191
Period size: 85 Copynumber: 1.9 Consensus size: 85
36696287 ATTATTTTAG
* * * *
36696297 ATGCAATGGATGTAATGTGTGCTTTGAAAAATTCA-AATTCCAAAAAGTCATTGTTGTACCATTC
1 ATGCAATGGATGCAATGTCTACTTTGAAAAA-T-AGAATTCCAAAAAGACATTGTTGTACCATTC
*
36696361 TATCACCAAAATGTTTCTAGGC
64 TATCACAAAAATGTTTCTAGGC
* * * **
36696383 ATGCAATGGATGCATTGTCTACTTT-ATAAAATAGAATTCCAAAATGACATTTTTGTACTTTTCT
1 ATGCAATGGATGCAATGTCTACTTTGA-AAAATAGAATTCCAAAAAGACATTGTTGTACCATTCT
36696447 ATCACAAAAAT
65 ATCACAAAAAT
36696458 ATTCCAAGTC
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
84 1 0.02
85 37 0.59
86 25 0.40
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (85 bp):
ATGCAATGGATGCAATGTCTACTTTGAAAAATAGAATTCCAAAAAGACATTGTTGTACCATTCTA
TCACAAAAATGTTTCTAGGC
Found at i:36710877 original size:30 final size:32
Alignment explanation
Indices: 36710814--36710878 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
36710804 ATAAAAATGG
36710814 TGAAAATGGAGAAATGAAAAATCATTTGAAAA
1 TGAAAATGGAGAAATGAAAAATCATTTGAAAA
* *
36710846 TGAAAATGGAGAAATG-GAAA-CATTTGGAAA
1 TGAAAATGGAGAAATGAAAAATCATTTGAAAA
36710876 TGA
1 TGA
36710879 TTATGGTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 12 0.39
31 3 0.10
32 16 0.52
ACGTcount: A:0.52, C:0.03, G:0.23, T:0.22
Consensus pattern (32 bp):
TGAAAATGGAGAAATGAAAAATCATTTGAAAA
Found at i:36718336 original size:18 final size:18
Alignment explanation
Indices: 36718313--36718358 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
36718303 TAAATAGTTT
36718313 GAGTTATTCGAATTAATC
1 GAGTTATTCGAATTAATC
*
36718331 GAGTTATTCAAATTAATC
1 GAGTTATTCGAATTAATC
*
36718349 AAGTTATTCG
1 GAGTTATTCG
36718359 GATCAACATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (18 bp):
GAGTTATTCGAATTAATC
Found at i:36720805 original size:6 final size:6
Alignment explanation
Indices: 36720796--36720829 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
36720786 CATAATCCAA
36720796 ATCATT ATCATT ATCATT ATCATT ATCATT ATCA
1 ATCATT ATCATT ATCATT ATCATT ATCATT ATCA
36720830 AACCCATACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.35, C:0.18, G:0.00, T:0.47
Consensus pattern (6 bp):
ATCATT
Found at i:36724051 original size:62 final size:62
Alignment explanation
Indices: 36723985--36724119 Score: 182
Period size: 62 Copynumber: 2.2 Consensus size: 62
36723975 ACACAATAAA
* *
36723985 TTACACGGCTTGGGCACACACCCGTGTCCCTAGCTGTGTGGTCTTGTACCAAAAATC-GTGAG
1 TTACACGGCTTGGGCAAACACCCGTGTCCCTAGCCGTGTGGTCTTGTACCAAAAA-CAGTGAG
* * * * *
36724047 TTACACGGCCTGGGCAAACGCCTGTGTCCCTGGCCGTGTGGTCTTGTACCACAAACAGTGAG
1 TTACACGGCTTGGGCAAACACCCGTGTCCCTAGCCGTGTGGTCTTGTACCAAAAACAGTGAG
*
36724109 TTACACAGCTT
1 TTACACGGCTT
36724120 AAGCACACGC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
61 1 0.02
62 62 0.98
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.25
Consensus pattern (62 bp):
TTACACGGCTTGGGCAAACACCCGTGTCCCTAGCCGTGTGGTCTTGTACCAAAAACAGTGAG
Found at i:36724136 original size:62 final size:61
Alignment explanation
Indices: 36724001--36724148 Score: 174
Period size: 62 Copynumber: 2.4 Consensus size: 61
36723991 GGCTTGGGCA
* * * **
36724001 CACAC-CCGTGTCCCTAGCTGTGTGGTCTTGTACCAAAAATCGTGAGTTACACGGCCTGGG
1 CACACGCCGTGTCCCTGGCCGTGTGGTCTTGTACCAAAAATCGTGAGTTACACAGCCTAAG
* * *
36724061 CAAACGCCTGTGTCCCTGGCCGTGTGGTCTTGTACCACAAA-CAGTGAGTTACACAGCTTAAG
1 CACACGCC-GTGTCCCTGGCCGTGTGGTCTTGTACCAAAAATC-GTGAGTTACACAGCCTAAG
*
36724123 CACACGCTCGTGTCTCTGGCCGTGTG
1 CACACGC-CGTGTCCCTGGCCGTGTG
36724149 AACTCTTCAC
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
60 4 0.05
61 3 0.04
62 66 0.89
63 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.26, T:0.25
Consensus pattern (61 bp):
CACACGCCGTGTCCCTGGCCGTGTGGTCTTGTACCAAAAATCGTGAGTTACACAGCCTAAG
Found at i:36725140 original size:19 final size:19
Alignment explanation
Indices: 36725116--36725156 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
36725106 GAGTCAAACA
36725116 GATGCGGATACAGTCGTCG
1 GATGCGGATACAGTCGTCG
36725135 GATGCGGATACAGTCGTCG
1 GATGCGGATACAGTCGTCG
36725154 GAT
1 GAT
36725157 TGATTCTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.22, C:0.20, G:0.37, T:0.22
Consensus pattern (19 bp):
GATGCGGATACAGTCGTCG
Found at i:36731041 original size:61 final size:62
Alignment explanation
Indices: 36730976--36731117 Score: 198
Period size: 62 Copynumber: 2.3 Consensus size: 62
36730966 TTACATGGCT
* *
36730976 TGGGCACACGCTCGTGTCCCTGGCCTGT-T-GTCTTGTACCACAAACAGTGAGTTACACAGCC
1 TGGGCACACGCTCGTGTCCCTAGCC-GTATGGTCTTGTACCACAAACAGTGAGCTACACAGCC
* * *
36731037 TGGGCACACGCTTGTGTCCCTAGCCGTATGGTCTTGTACCACAAATAGTGAGCTACACGGCC
1 TGGGCACACGCTCGTGTCCCTAGCCGTATGGTCTTGTACCACAAACAGTGAGCTACACAGCC
* *
36731099 TAGGCACACGCACGTGTCC
1 TGGGCACACGCTCGTGTCC
36731118 TTGGATGTGT
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
60 2 0.03
61 24 0.34
62 45 0.63
ACGTcount: A:0.20, C:0.31, G:0.25, T:0.23
Consensus pattern (62 bp):
TGGGCACACGCTCGTGTCCCTAGCCGTATGGTCTTGTACCACAAACAGTGAGCTACACAGCC
Found at i:36734245 original size:18 final size:20
Alignment explanation
Indices: 36734216--36734261 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
36734206 TATGATTTAT
36734216 AGGTTGAATTGAA-TACTTG
1 AGGTTGAATTGAAGTACTTG
36734235 AGGTT-AATTGAAGTACTT-
1 AGGTTGAATTGAAGTACTTG
36734253 A-GTTGAATT
1 AGGTTGAATT
36734262 AAATTATCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 3 0.12
18 12 0.48
19 10 0.40
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.39
Consensus pattern (20 bp):
AGGTTGAATTGAAGTACTTG
Found at i:36735886 original size:54 final size:54
Alignment explanation
Indices: 36735768--36735890 Score: 149
Period size: 54 Copynumber: 2.3 Consensus size: 54
36735758 TTATTTCAAT
* * *
36735768 TCAGTGAGTTACACAGTCTAGCACACGGCCTGCGACACGACTGTGTGTCACAAA
1 TCAGAGAGTTACACGGTCTAGCACACGGCCTGCGACACGACTGTGTGACACAAA
* * * * *
36735822 TTAGAAAGTTACACGGTCTGGCACATGGCCTGCGATACGACTGTGTGAC-CTAAA
1 TCAGAGAGTTACACGGTCTAGCACACGGCCTGCGACACGACTGTGTGACAC-AAA
*
36735876 TCAGGGAGTTACACG
1 TCAGAGAGTTACACG
36735891 ATTTAAGACA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 1 0.02
54 56 0.98
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (54 bp):
TCAGAGAGTTACACGGTCTAGCACACGGCCTGCGACACGACTGTGTGACACAAA
Found at i:36737959 original size:3 final size:3
Alignment explanation
Indices: 36737951--36738018 Score: 127
Period size: 3 Copynumber: 22.7 Consensus size: 3
36737941 TTTTCTCTTA
*
36737951 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
36737999 AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
36738019 CCTTATTCAA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:36742337 original size:21 final size:22
Alignment explanation
Indices: 36742288--36742337 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 22
36742278 TAAAAATATT
* *
36742288 TATAACATTATTTTTATGAATA
1 TATAATATTATATTTATGAATA
36742310 -AGT-ATATTATATTTAT-AATA
1 TA-TAATATTATATTTATGAATA
36742330 TATAATAT
1 TATAATAT
36742338 ATACACATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 7
0.72 0.06 0.22
Matches are distributed among these distances:
20 5 0.22
21 17 0.74
22 1 0.04
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (22 bp):
TATAATATTATATTTATGAATA
Found at i:36743644 original size:33 final size:32
Alignment explanation
Indices: 36743599--36743759 Score: 142
Period size: 33 Copynumber: 4.8 Consensus size: 32
36743589 ACATTCGTAG
*
36743599 TGCCATAACCCAGTTATGGTCTTATCATCAGAA
1 TGCCATAGCCCAGTTATGGTCTTA-CATCAGAA
* * *
36743632 TACCATAGCCCAGTTATGGTCTTACATATAAACA
1 TGCCATAGCCCAGTTATGGTCTTACAT-CAGA-A
* * *** * * *
36743666 CTGCCATGGTCCAACCATGGTCTTACGTTCATAG
1 -TGCCATAGCCCAGTTATGGTCTTAC-ATCAGAA
*
36743700 TGCCATAACCCAGTTATGGTCTTATCATCAGAA
1 TGCCATAGCCCAGTTATGGTCTTA-CATCAGAA
*
36743733 TGCCATAGCCCAGCTATGGTCTTACAT
1 TGCCATAGCCCAGTTATGGTCTTACAT
36743760 ATAAACACTG
Statistics
Matches: 98, Mismatches: 25, Indels: 11
0.73 0.19 0.08
Matches are distributed among these distances:
32 6 0.06
33 68 0.69
34 2 0.02
35 21 0.21
36 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (32 bp):
TGCCATAGCCCAGTTATGGTCTTACATCAGAA
Found at i:36743771 original size:101 final size:101
Alignment explanation
Indices: 36743587--36743825 Score: 424
Period size: 101 Copynumber: 2.4 Consensus size: 101
36743577 AATTCGTCCT
* * *
36743587 TTACATTCGTAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATACCATAGCCCAGTTATGGT
1 TTACGTTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATACCATAGCCCAGCTATGGT
36743652 CTTACATATAAACACTGCCATGGTCCAACCATGGTC
66 CTTACATATAAACACTGCCATGGTCCAACCATGGTC
*
36743688 TTACGTTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGT
1 TTACGTTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATACCATAGCCCAGCTATGGT
*
36743753 CTTACATATAAACACTGCCATGGTTCAACCATGGTC
66 CTTACATATAAACACTGCCATGGTCCAACCATGGTC
*
36743789 TTACGTTCAAAGTGCCATAACCCAGTTATGGTCTTAT
1 TTACGTTCATAGTGCCATAACCCAGTTATGGTCTTAT
36743826 TCGTCAATTC
Statistics
Matches: 132, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
101 132 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (101 bp):
TTACGTTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATACCATAGCCCAGCTATGGT
CTTACATATAAACACTGCCATGGTCCAACCATGGTC
Found at i:36743820 original size:33 final size:32
Alignment explanation
Indices: 36743597--36743824 Score: 127
Period size: 33 Copynumber: 6.8 Consensus size: 32
36743587 TTACATTCGT
* *
36743597 AGTGCCATAACCCAGTTATGGTCTTATCATCAGA
1 AGTGCCATAGCCCAGTTATGGTCTTA-CTTCA-A
* *
36743631 A-TACCATAGCCCAGTTATGGTCTTACATATAAA
1 AGTGCCATAGCCCAGTTATGGTCTTAC-T-TCAA
* * * *** *
36743664 CACTGCCATGGTCCAACCATGGTCTTACGTTCAT
1 -AGTGCCATAGCCCAGTTATGGTCTTAC-TTCAA
* *
36743698 AGTGCCATAACCCAGTTATGGTCTTATCATCAGA
1 AGTGCCATAGCCCAGTTATGGTCTTA-CTTCA-A
* *
36743732 A-TGCCATAGCCCAGCTATGGTCTTACATATAAA
1 AGTGCCATAGCCCAGTTATGGTCTTAC-T-TCAA
* * ** ***
36743765 CACTGCCATGGTTCAACCATGGTCTTACGTTCAA
1 -AGTGCCATAGCCCAGTTATGGTCTTAC-TTCAA
*
36743799 AGTGCCATAACCCAGTTATGGTCTTA
1 AGTGCCATAGCCCAGTTATGGTCTTA
36743825 TTCGTCAATT
Statistics
Matches: 143, Mismatches: 41, Indels: 21
0.70 0.20 0.10
Matches are distributed among these distances:
32 2 0.01
33 86 0.60
34 14 0.10
35 41 0.29
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (32 bp):
AGTGCCATAGCCCAGTTATGGTCTTACTTCAA
Found at i:36752587 original size:37 final size:36
Alignment explanation
Indices: 36752536--36752682 Score: 163
Period size: 37 Copynumber: 4.2 Consensus size: 36
36752526 TAAATATATT
36752536 ATTTTTTAATTTTAAAATATTTTAAAATACTTTTTA
1 ATTTTTTAATTTTAAAATATTTTAAAATACTTTTTA
*
36752572 ATTTTTTAAAATTTAAAATATTTTAAAATACTTTTTTA
1 ATTTTTT-AATTTTAAAATATTTTAAAATAC-TTTTTA
36752610 A-TTTTTAATTTT-AAA-A---T---AT--TTTTTA
1 ATTTTTTAATTTTAAAATATTTTAAAATACTTTTTA
36752635 ATTTTTTAATTTTAAAATATTTTAAAAATACTTTTTTTA
1 ATTTTTTAATTTTAAAATATTTT-AAAATAC--TTTTTA
36752674 ATTTTTTAA
1 ATTTTTTAA
36752683 AATTTTTAAA
Statistics
Matches: 93, Mismatches: 2, Indels: 29
0.75 0.02 0.23
Matches are distributed among these distances:
25 7 0.08
26 11 0.12
27 3 0.03
28 3 0.03
31 2 0.02
34 1 0.01
35 5 0.05
36 12 0.13
37 27 0.29
38 7 0.08
39 15 0.16
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (36 bp):
ATTTTTTAATTTTAAAATATTTTAAAATACTTTTTA
Found at i:36752633 original size:63 final size:64
Alignment explanation
Indices: 36752554--36752679 Score: 211
Period size: 63 Copynumber: 2.0 Consensus size: 64
36752544 ATTTTAAAAT
36752554 ATTTTAAAATACTTTTTAATTTTTTAAAATTTAAAATATTTT-AAAATAC-TTTTTTAATTTTTA
1 ATTTTAAAATACTTTTTAATTTTTT-AAATTTAAAATATTTTAAAAATACTTTTTTTAATTTTTA
* *
36752617 ATTTTAAAATATTTTTTAATTTTTTAATTTTAAAATATTTTAAAAATACTTTTTTTAATTTTT
1 ATTTTAAAATACTTTTTAATTTTTTAAATTTAAAATATTTTAAAAATACTTTTTTTAATTTTT
36752680 TAAAATTTTT
Statistics
Matches: 59, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
62 15 0.25
63 31 0.53
64 13 0.22
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (64 bp):
ATTTTAAAATACTTTTTAATTTTTTAAATTTAAAATATTTTAAAAATACTTTTTTTAATTTTTA
Found at i:36752637 original size:25 final size:26
Alignment explanation
Indices: 36752591--36752657 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
36752581 AATTTAAAAT
36752591 ATTTTAAAATACTTTTTTAA-TTTTTA
1 ATTTTAAAATA-TTTTTTAATTTTTTA
36752617 ATTTTAAAATATTTTTTAATTTTTTA
1 ATTTTAAAATATTTTTTAATTTTTTA
36752643 ATTTTAAAATATTTT
1 ATTTTAAAATATTTT
36752658 AAAAATACTT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 8 0.20
26 32 0.80
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (26 bp):
ATTTTAAAATATTTTTTAATTTTTTA
Found at i:36752664 original size:11 final size:10
Alignment explanation
Indices: 36752544--36752695 Score: 71
Period size: 10 Copynumber: 16.1 Consensus size: 10
36752534 TTATTTTTTA
36752544 ATTTTAAAAT
1 ATTTTAAAAT
36752554 ATTTTAAAAT
1 ATTTTAAAAT
*
36752564 ACTTTT-TAAT
1 A-TTTTAAAAT
*
36752574 -TTTTTAAA-
1 ATTTTAAAAT
36752582 A-TTTAAAAT
1 ATTTTAAAAT
36752591 ATTTTAAAAT
1 ATTTTAAAAT
**
36752601 ACTTTTTTAAT
1 A-TTTTAAAAT
36752612 -TTTT---A-
1 ATTTTAAAAT
36752617 ATTTTAAAAT
1 ATTTTAAAAT
**
36752627 ATTTTTTAAT
1 ATTTTAAAAT
*
36752637 -TTTT--TA-
1 ATTTTAAAAT
36752643 ATTTTAAAAT
1 ATTTTAAAAT
36752653 ATTTTAAAAAT
1 ATTTT-AAAAT
**
36752664 ACTTTTTTTAAT
1 A--TTTTAAAAT
*
36752676 TTTTTAAAAT
1 ATTTTAAAAT
36752686 -TTTTAAAAT
1 ATTTTAAAAT
36752695 A
1 A
36752696 AAAATGGGCC
Statistics
Matches: 109, Mismatches: 14, Indels: 38
0.68 0.09 0.24
Matches are distributed among these distances:
6 5 0.05
7 5 0.05
8 10 0.09
9 22 0.20
10 43 0.39
11 17 0.16
12 3 0.03
13 4 0.04
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (10 bp):
ATTTTAAAAT
Found at i:36755665 original size:9 final size:9
Alignment explanation
Indices: 36755648--36755684 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
36755638 TGAGTTTTCG
36755648 AATTCGAAT
1 AATTCGAAT
*
36755657 AACTCGAAT
1 AATTCGAAT
36755666 AATTCGAAT
1 AATTCGAAT
36755675 AATTCGAAT
1 AATTCGAAT
36755684 A
1 A
36755685 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:36761703 original size:2 final size:2
Alignment explanation
Indices: 36761696--36761747 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
36761686 CCTACTATGC
36761696 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36761738 AT AT AT AT AT
1 AT AT AT AT AT
36761748 CAACCCCAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36778284 original size:16 final size:16
Alignment explanation
Indices: 36778263--36778294 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
36778253 GGTAAATTAC
36778263 ACCAACAGTCAATCAA
1 ACCAACAGTCAATCAA
36778279 ACCAACAGTCAATCAA
1 ACCAACAGTCAATCAA
36778295 TTTTGAGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.31, G:0.06, T:0.12
Consensus pattern (16 bp):
ACCAACAGTCAATCAA
Found at i:36778511 original size:17 final size:17
Alignment explanation
Indices: 36778489--36778545 Score: 105
Period size: 17 Copynumber: 3.4 Consensus size: 17
36778479 TTAGAGAAGA
36778489 AGAAGATGATGAGGAGG
1 AGAAGATGATGAGGAGG
36778506 AGAAGATGATGAGGAGG
1 AGAAGATGATGAGGAGG
*
36778523 AGAAGATGATGATGAGG
1 AGAAGATGATGAGGAGG
36778540 AGAAGA
1 AGAAGA
36778546 AGAGGAAGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
17 39 1.00
ACGTcount: A:0.44, C:0.00, G:0.44, T:0.12
Consensus pattern (17 bp):
AGAAGATGATGAGGAGG
Found at i:36778511 original size:20 final size:20
Alignment explanation
Indices: 36778482--36778548 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 20
36778472 TTTAGGGTTA
* *
36778482 GAGAAGAAGAAGATGATGAG
1 GAGAAGAAGATGATGAGGAG
*
36778502 GAGGAGAAGATGATGAGGAG
1 GAGAAGAAGATGATGAGGAG
*
36778522 GAGAAGATGATGATGAGGAG
1 GAGAAGAAGATGATGAGGAG
*
36778542 AAGAAGA
1 GAGAAGA
36778549 GGAAGAAGAG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.46, C:0.00, G:0.43, T:0.10
Consensus pattern (20 bp):
GAGAAGAAGATGATGAGGAG
Found at i:36778559 original size:20 final size:20
Alignment explanation
Indices: 36778516--36778560 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
36778506 AGAAGATGAT
* * * *
36778516 GAGGAGGAGAAGATGATGAT
1 GAGGAGAAGAAGAGGAAGAA
36778536 GAGGAGAAGAAGAGGAAGAA
1 GAGGAGAAGAAGAGGAAGAA
36778556 GAGGA
1 GAGGA
36778561 AGAGGAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.47, C:0.00, G:0.47, T:0.07
Consensus pattern (20 bp):
GAGGAGAAGAAGAGGAAGAA
Found at i:36779254 original size:23 final size:24
Alignment explanation
Indices: 36779215--36779260 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
36779205 AAAAAAAGAA
*
36779215 ACATTTGTATTTCTCAATTCTCAC
1 ACATTTGTATTTCTCAATACTCAC
36779239 ACATTTGT-TTTCTCAATACTCA
1 ACATTTGTATTTCTCAATACTCA
36779261 TATGTTAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.26, C:0.24, G:0.04, T:0.46
Consensus pattern (24 bp):
ACATTTGTATTTCTCAATACTCAC
Found at i:36779696 original size:21 final size:22
Alignment explanation
Indices: 36779670--36779732 Score: 85
Period size: 21 Copynumber: 3.0 Consensus size: 22
36779660 ATCTTTTTGG
36779670 TGAGTTGGGGCAGCTTGTTGA-
1 TGAGTTGGGGCAGCTTGTTGAC
*
36779691 TGAGTTGGGGCAGCTTG-TAAC
1 TGAGTTGGGGCAGCTTGTTGAC
* *
36779712 TGAGTTAGGGCAGCCTGTTGA
1 TGAGTTGGGGCAGCTTGTTGA
36779733 GTTGGGGTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
20 2 0.06
21 32 0.89
22 2 0.06
ACGTcount: A:0.17, C:0.13, G:0.40, T:0.30
Consensus pattern (22 bp):
TGAGTTGGGGCAGCTTGTTGAC
Found at i:36779781 original size:21 final size:21
Alignment explanation
Indices: 36779730--36779781 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
36779720 GGCAGCCTGT
36779730 TGAGTTGGGGTACTCTCTTGC
1 TGAGTTGGGGTACTCTCTTGC
* *
36779751 TGATTTGGGGTAGC-CTGTTGC
1 TGAGTTGGGGTA-CTCTCTTGC
*
36779772 TGAGTGGGGG
1 TGAGTTGGGG
36779782 CAACCACTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.10, C:0.13, G:0.42, T:0.35
Consensus pattern (21 bp):
TGAGTTGGGGTACTCTCTTGC
Found at i:36780054 original size:2 final size:2
Alignment explanation
Indices: 36780047--36780072 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
36780037 GAGGCAATAT
36780047 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
36780073 GCATGTGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:36782121 original size:62 final size:62
Alignment explanation
Indices: 36782055--36782188 Score: 207
Period size: 62 Copynumber: 2.2 Consensus size: 62
36782045 TTCTGTCAGT
36782055 CAATAACCAATACAAAAATAATTTAATACAAACACAA-CAATTTAAGTCATGCACATGGCAGA
1 CAATAACCAATACAAAAATAATTTAATACAAACACAATC-ATTTAAGTCATGCACATGGCAGA
** * *
36782117 CAATAACCAATACAAAAATAATTTAATACAAACACAATCATTTCTGTCATGCACATTGTAGA
1 CAATAACCAATACAAAAATAATTTAATACAAACACAATCATTTAAGTCATGCACATGGCAGA
*
36782179 CAATAGCCAA
1 CAATAACCAA
36782189 ACACTTTAAC
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
62 65 0.98
63 1 0.02
ACGTcount: A:0.49, C:0.20, G:0.07, T:0.23
Consensus pattern (62 bp):
CAATAACCAATACAAAAATAATTTAATACAAACACAATCATTTAAGTCATGCACATGGCAGA
Found at i:36782512 original size:16 final size:17
Alignment explanation
Indices: 36782493--36782528 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
36782483 AAATAACCCT
36782493 AAATAACCCTAAATC-A
1 AAATAACCCTAAATCTA
36782509 AAATAACCCTAAATCTA
1 AAATAACCCTAAATCTA
36782526 AAA
1 AAA
36782529 AATACAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.58, C:0.22, G:0.00, T:0.19
Consensus pattern (17 bp):
AAATAACCCTAAATCTA
Found at i:36782761 original size:43 final size:42
Alignment explanation
Indices: 36782675--36782779 Score: 110
Period size: 43 Copynumber: 2.6 Consensus size: 42
36782665 AAAAAAGATT
* *
36782675 AATCATTTTCTAACCCTAAA-C--CCTATTAATCGATTATCA
1 AATCAATTTCTAACCCTAAACCAACCTATTAATCGATTACCA
* * *
36782714 AATCAATTTCTAACCCTAAACCAACCTTCTTAATCGATTCCCG
1 AATCAATTTCTAACCCTAAACCAACC-TATTAATCGATTACCA
* *
36782757 AATCAAATTCGAACCC-AAACCAA
1 AATCAATTTCTAACCCTAAACCAA
36782780 TACAAATCAC
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
39 19 0.35
40 1 0.02
42 9 0.16
43 26 0.47
ACGTcount: A:0.38, C:0.30, G:0.04, T:0.29
Consensus pattern (42 bp):
AATCAATTTCTAACCCTAAACCAACCTATTAATCGATTACCA
Found at i:36782815 original size:16 final size:17
Alignment explanation
Indices: 36782794--36782825 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
36782784 AATCACAACT
36782794 ATTTTTT-CCCAAATCG
1 ATTTTTTCCCCAAATCG
36782810 ATTTTTTCCCCAAATC
1 ATTTTTTCCCCAAATC
36782826 CCCTTAATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.25, C:0.28, G:0.03, T:0.44
Consensus pattern (17 bp):
ATTTTTTCCCCAAATCG
Found at i:36783758 original size:29 final size:31
Alignment explanation
Indices: 36783726--36783789 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 31
36783716 TTAATTTTAT
*
36783726 TATTAAATTT-AAA-TAAAATAATGTATTTC
1 TATTAAATTTAAAAGGAAAATAATGTATTTC
* *
36783755 TATT--TTTTAAAAGGAAAATAATGTATTTT
1 TATTAAATTTAAAAGGAAAATAATGTATTTC
36783784 TATTAA
1 TATTAA
36783790 TAACCAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
27 3 0.11
28 3 0.11
29 22 0.79
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (31 bp):
TATTAAATTTAAAAGGAAAATAATGTATTTC
Found at i:36784665 original size:72 final size:71
Alignment explanation
Indices: 36784533--36784692 Score: 178
Period size: 72 Copynumber: 2.2 Consensus size: 71
36784523 GGATTTCATG
** *
36784533 ATCGATGGCTTGAGATCCAACATGAGTTGCAGATTCTCTGAAGCTTGCATGAGTAGCATCGAATC
1 ATCGATGGCTTGAGATCCAACAT-AGTTGCAGATTCTCTGAAAATTGCATGAGCAGCATCGAATC
**
36784598 ATTGATT
65 ATACATT
* * ** * *
36784605 ATCGATGGCTTGATATCCAGCACAT-GTTGCAGATTCTTTGAAAATTGTGTGAGCATCATCGATT
1 ATCGATGGCTTGAGATCCA--ACATAGTTGCAGATTCTCTGAAAATTGCATGAGCAGCATCGAAT
*
36784669 TATACATT
64 CATACATT
36784677 ATCGATGGCTTGAGAT
1 ATCGATGGCTTGAGAT
36784693 TCGACACATG
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
72 69 0.95
74 4 0.05
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.33
Consensus pattern (71 bp):
ATCGATGGCTTGAGATCCAACATAGTTGCAGATTCTCTGAAAATTGCATGAGCAGCATCGAATCA
TACATT
Found at i:36786001 original size:9 final size:9
Alignment explanation
Indices: 36785984--36786013 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
36785974 TGATACTTGG
*
36785984 TTTGGAAAC
1 TTTGAAAAC
36785993 TTTGAAAAC
1 TTTGAAAAC
36786002 TTTGAAAAC
1 TTTGAAAAC
36786011 TTT
1 TTT
36786014 ACAATTTGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.40
Consensus pattern (9 bp):
TTTGAAAAC
Found at i:36786679 original size:22 final size:22
Alignment explanation
Indices: 36786653--36786697 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
36786643 AGATCAACAC
36786653 AAATAT-AATCACATACATATCA
1 AAATATCAATCACA-ACATATCA
*
36786675 AAATATCAATCTCAACATATCA
1 AAATATCAATCACAACATATCA
36786697 A
1 A
36786698 TCATCATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.27
Consensus pattern (22 bp):
AAATATCAATCACAACATATCA
Found at i:36799921 original size:42 final size:42
Alignment explanation
Indices: 36799868--36799985 Score: 139
Period size: 42 Copynumber: 2.8 Consensus size: 42
36799858 TGATATGAGT
*
36799868 TTCAGATTAACCCTTTTGGGTTTCAGTTTAGCTCTT-TTGAGC
1 TTCAGATTAACCCTTATGGGTTTCAGTTTAGCTCTTCTT-AGC
* * * * * *
36799910 TTTAGTTTAACCCTAATGGGCTTCAATTTAGCTATTCTTAGC
1 TTCAGATTAACCCTTATGGGTTTCAGTTTAGCTCTTCTTAGC
* *
36799952 TTCAGATTAACCCTTATGGGTTTCCGTTCAGCTC
1 TTCAGATTAACCCTTATGGGTTTCAGTTTAGCTC
36799986 CAATGAGTTC
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
42 58 0.97
43 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.42
Consensus pattern (42 bp):
TTCAGATTAACCCTTATGGGTTTCAGTTTAGCTCTTCTTAGC
Found at i:36816285 original size:19 final size:19
Alignment explanation
Indices: 36816263--36816305 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
36816253 AAATTAATTT
*
36816263 AAAATATAAAAAAATCATA
1 AAAATACAAAAAAATCATA
* * *
36816282 AAAATGCAAAAAATTCCTA
1 AAAATACAAAAAAATCATA
36816301 AAAAT
1 AAAAT
36816306 TTCTTAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.67, C:0.09, G:0.02, T:0.21
Consensus pattern (19 bp):
AAAATACAAAAAAATCATA
Found at i:36817768 original size:2 final size:2
Alignment explanation
Indices: 36817761--36817796 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
36817751 NNNNNNNNNN
36817761 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
36817797 ATTTCAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36818360 original size:57 final size:57
Alignment explanation
Indices: 36818277--36818420 Score: 267
Period size: 57 Copynumber: 2.6 Consensus size: 57
36818267 AATACAAATA
36818277 AATATAAT--AAA-TATATCCAATACAATAAATATTATTCTATTTATTTGTATTTTT
1 AATATAATAAAAATTATATCCAATACAATAAATATTATTCTATTTATTTGTATTTTT
36818331 AATATAATAAAAATTATATCCAATACAATAAATATTATTCTATTTATTTGTATTTTT
1 AATATAATAAAAATTATATCCAATACAATAAATATTATTCTATTTATTTGTATTTTT
36818388 AATATAATAAAAATTATATCCAATACAATAAAT
1 AATATAATAAAAATTATATCCAATACAATAAAT
36818421 TTTTATTTTA
Statistics
Matches: 87, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
54 8 0.09
56 3 0.03
57 76 0.87
ACGTcount: A:0.47, C:0.08, G:0.01, T:0.44
Consensus pattern (57 bp):
AATATAATAAAAATTATATCCAATACAATAAATATTATTCTATTTATTTGTATTTTT
Found at i:36818526 original size:21 final size:22
Alignment explanation
Indices: 36818472--36818526 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 22
36818462 ATATTCTGAG
36818472 TTGACATTAT-TTCATATGAAAT
1 TTGA-ATTATATTCATATGAAAT
*
36818494 TT-AATTATTATT-ATATGATAT
1 TTGAATTA-TATTCATATGAAAT
36818515 TTGAATTATATT
1 TTGAATTATATT
36818527 TTGAGTTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
20 4 0.14
21 16 0.55
22 9 0.31
ACGTcount: A:0.36, C:0.04, G:0.07, T:0.53
Consensus pattern (22 bp):
TTGAATTATATTCATATGAAAT
Found at i:36819082 original size:20 final size:20
Alignment explanation
Indices: 36819059--36819102 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
36819049 TCCTTAAATT
36819059 AATTTTCTTTTAAATTTTAA
1 AATTTTCTTTTAAATTTTAA
* *
36819079 AATTTTTTTTTACATTTTAA
1 AATTTTCTTTTAAATTTTAA
36819099 AATT
1 AATT
36819103 ATTTTTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (20 bp):
AATTTTCTTTTAAATTTTAA
Found at i:36819107 original size:20 final size:20
Alignment explanation
Indices: 36819066--36819108 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
36819056 ATTAATTTTC
*
36819066 TTTTAAATTTTAAAATTTTT
1 TTTTAAATTTTAAAATTATT
*
36819086 TTTTACATTTTAAAATTATT
1 TTTTAAATTTTAAAATTATT
36819106 TTT
1 TTT
36819109 AATAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTAAATTTTAAAATTATT
Found at i:36821506 original size:49 final size:49
Alignment explanation
Indices: 36821355--36821507 Score: 144
Period size: 49 Copynumber: 3.1 Consensus size: 49
36821345 AAGCTAGCCC
* ** * * *
36821355 GTGTTGTCCACACGATCTACCCACATGGTTTGCACGATTTCACACAGTT
1 GTGTGGTCCACACGGGCTACCCACATGGTCTACACGATTTCACACAGCT
* * * * * *
36821404 GTGTGGTCCACATGGGCTACCCACATGGTCTGCACAATTTTAGACAGCC
1 GTGTGGTCCACACGGGCTACCCACATGGTCTACACGATTTCACACAGCT
** * * * *
36821453 GTGTGGTCCACACGGTTTACCTACATGGTCTATATGATTTCACACGGCT
1 GTGTGGTCCACACGGGCTACCCACATGGTCTACACGATTTCACACAGCT
36821502 GTGTGG
1 GTGTGG
36821508 CGCTGGGCAG
Statistics
Matches: 82, Mismatches: 22, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
49 82 1.00
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (49 bp):
GTGTGGTCCACACGGGCTACCCACATGGTCTACACGATTTCACACAGCT
Found at i:36825122 original size:26 final size:26
Alignment explanation
Indices: 36825057--36825133 Score: 95
Period size: 26 Copynumber: 3.0 Consensus size: 26
36825047 AGCGAGCCAT
* *
36825057 ATTGGGAAGCTC-CGAAGAGCCATTA
1 ATTGGGAAGCTCACAAAGAGCCTTTA
* *
36825082 A-CGAGAAGCTCACAAAGAGCCTTTA
1 ATTGGGAAGCTCACAAAGAGCCTTTA
36825107 ATTGGGAAGCTCACAAAGAGCCATTTA
1 ATTGGGAAGCTCACAAAGAGCC-TTTA
36825134 TCGAGATGCT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
24 8 0.19
25 13 0.30
26 18 0.42
27 4 0.09
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
ATTGGGAAGCTCACAAAGAGCCTTTA
Found at i:36830277 original size:16 final size:16
Alignment explanation
Indices: 36830256--36830287 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
36830246 TGAAATGGTA
36830256 AGTGTTCAATATGAAT
1 AGTGTTCAATATGAAT
36830272 AGTGTTCAATATGAAT
1 AGTGTTCAATATGAAT
36830288 TAAGATATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.19, T:0.38
Consensus pattern (16 bp):
AGTGTTCAATATGAAT
Done.