Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 ID=Chr13-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58321163
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 747533 characters in sequence are not A, C, G, or T
File 126 of 199
Found at i:38262373 original size:20 final size:20
Alignment explanation
Indices: 38262333--38262376 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
38262323 ATAACAATTT
**
38262333 AAAATTGTAAAAATTGTAAA
1 AAAATTGTAAAAATTACAAA
*
38262353 AAAATTGTCAAAATTACAAA
1 AAAATTGTAAAAATTACAAA
38262373 AAAA
1 AAAA
38262377 ATGAAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.64, C:0.05, G:0.07, T:0.25
Consensus pattern (20 bp):
AAAATTGTAAAAATTACAAA
Found at i:38262401 original size:19 final size:20
Alignment explanation
Indices: 38262372--38262414 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
38262362 AAAATTACAA
38262372 AAAAAATGAAAATAAAAAA-T
1 AAAAAATG-AAATAAAAAACT
38262392 AAAAAA-GAAATAAAAAACT
1 AAAAAATGAAATAAAAAACT
38262411 AAAA
1 AAAA
38262415 TTTTTATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 10 0.45
19 6 0.27
20 6 0.27
ACGTcount: A:0.81, C:0.02, G:0.05, T:0.12
Consensus pattern (20 bp):
AAAAAATGAAATAAAAAACT
Found at i:38262453 original size:47 final size:47
Alignment explanation
Indices: 38262402--38262494 Score: 123
Period size: 47 Copynumber: 2.0 Consensus size: 47
38262392 AAAAAAGAAA
** *
38262402 TAAAAAACTAAAATTTTTATTTTTACCTAATTTTTATAAATATTACT
1 TAAAAAACTAAAATTGATAATTTTACCTAATTTTTATAAATATTACT
* * * *
38262449 TAAAAAACTGAGATTGATAATTTTATCTAATTTTTTTAAATATTAC
1 TAAAAAACTAAAATTGATAATTTTACCTAATTTTTATAAATATTAC
38262495 CGAAATTAAC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 39 1.00
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (47 bp):
TAAAAAACTAAAATTGATAATTTTACCTAATTTTTATAAATATTACT
Found at i:38263210 original size:198 final size:198
Alignment explanation
Indices: 38262882--38263292 Score: 653
Period size: 198 Copynumber: 2.1 Consensus size: 198
38262872 GGCGTTTATG
* **
38262882 TATAAACGCCGTAATTTACAGAAATTGTTTACGAAAACGGCTCCGTTTTCTTATTTATCTTTAGT
1 TATAAACGCCGCAAAGTACAGAAATTGTTTACGAAAACGGCTCCGTTTTCTTATTTATCTTTAGT
* *
38262947 GGCGCTTTTAGTAAACGCCGCAAAATTGTTTTAATTTTTATGGAGACGATGCCGTTTTGTCTAAA
66 GGCGCTTTTAGTAAACGCCGCAAAAATGTTTTAATTTTTATGGAGACGATGCCGTTTTCTCTAAA
* * * * *
38263012 ACGCCATGAGTTTTAGTTTACTAATCGGGGAACGACAGCGTTTGATCATATTACTAGTGGCGCTA
131 ACGCAATGACTTTGAGTTAACTAATCGGGAAACGACAGCGTTTGATCATATTACTAGTGGCGCTA
38263077 GTA
196 GTA
* * *
38263080 TATAAACGCCGCAAAGTACAGAAATTGTTTAGGAAAACGGCTTCGTTTTCTTATTTA-CTTTTGG
1 TATAAACGCCGCAAAGTACAGAAATTGTTTACGAAAACGGCTCCGTTTTCTTATTTATC-TTTAG
38263144 TGGCGCTTTTAGTAAACGCCGCAAAAATGTTTTAATTTTTATGGAGACGATGCCGTTTTCTCTAA
65 TGGCGCTTTTAGTAAACGCCGCAAAAATGTTTTAATTTTTATGGAGACGATGCCGTTTTCTCTAA
*
38263209 AACGCAATGACTTTGAGTTAACTGATCGGGAAACGACAGCGTTTGATCATATTACTAGTGGCGCT
130 AACGCAATGACTTTGAGTTAACTAATCGGGAAACGACAGCGTTTGATCATATTACTAGTGGCGCT
* *
38263274 GGTG
195 AGTA
*
38263278 TGTAAACGCCGCAAA
1 TATAAACGCCGCAAA
38263293 TGGGTTAATT
Statistics
Matches: 195, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
197 1 0.01
198 194 0.99
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (198 bp):
TATAAACGCCGCAAAGTACAGAAATTGTTTACGAAAACGGCTCCGTTTTCTTATTTATCTTTAGT
GGCGCTTTTAGTAAACGCCGCAAAAATGTTTTAATTTTTATGGAGACGATGCCGTTTTCTCTAAA
ACGCAATGACTTTGAGTTAACTAATCGGGAAACGACAGCGTTTGATCATATTACTAGTGGCGCTA
GTA
Found at i:38265151 original size:48 final size:47
Alignment explanation
Indices: 38265099--38265256 Score: 171
Period size: 47 Copynumber: 3.2 Consensus size: 47
38265089 AAATATATAT
38265099 ATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATAC
1 ATATAT-TGTTAATATTTTTACAATTTAATTTAACTTATTACTAATAC
* *
38265147 ATATATTGTTCGAATATAATTTTTTAAAATTTATATATT-AC--ATTACTTAA-AT
1 ATATATTGTT---A-AT-A-TTTTTACAATTTA-AT-TTAACTTATTAC-TAATAC
38265199 ATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATAC
1 ATATAT-TGTTAATATTTTTACAATTTAATTTAACTTATTACTAATAC
38265247 ATATATTGTT
1 ATATATTGTT
38265257 CGAATATAAT
Statistics
Matches: 92, Mismatches: 4, Indels: 29
0.74 0.03 0.23
Matches are distributed among these distances:
45 2 0.02
46 4 0.04
47 23 0.25
48 19 0.21
49 2 0.02
50 2 0.02
51 2 0.02
52 13 0.14
53 19 0.21
54 4 0.04
55 2 0.02
ACGTcount: A:0.39, C:0.07, G:0.03, T:0.51
Consensus pattern (47 bp):
ATATATTGTTAATATTTTTACAATTTAATTTAACTTATTACTAATAC
Found at i:38265173 original size:46 final size:46
Alignment explanation
Indices: 38265123--38265273 Score: 139
Period size: 48 Copynumber: 3.1 Consensus size: 46
38265113 ATTTTTACAA
38265123 TTTAATTTAACTTATTACTAATACATATATTGTTCGAATATAATTT
1 TTTAATTTAACTTATTACTAATACATATATTGTTCGAATATAATTT
* * *
38265169 TTTAAAATTTATATATTACATTACTTAA-ATATATATATGTT--AATAT-TTTT
1 TTT--AATTTA-A-CTT--ATTAC-TAATACATATAT-TGTTCGAATATAATTT
38265219 ACAATTTAATTTAACTTATTACTAATACATATATTGTTCGAATATAATTT
1 ----TTTAATTTAACTTATTACTAATACATATATTGTTCGAATATAATTT
38265269 TTTAA
1 TTTAA
38265274 AATTATATAT
Statistics
Matches: 83, Mismatches: 6, Indels: 32
0.69 0.05 0.26
Matches are distributed among these distances:
46 8 0.10
47 7 0.08
48 18 0.22
49 6 0.07
50 10 0.12
51 6 0.07
52 18 0.22
53 7 0.08
54 3 0.04
ACGTcount: A:0.39, C:0.07, G:0.03, T:0.50
Consensus pattern (46 bp):
TTTAATTTAACTTATTACTAATACATATATTGTTCGAATATAATTT
Found at i:38265285 original size:46 final size:46
Alignment explanation
Indices: 38265135--38265286 Score: 116
Period size: 50 Copynumber: 3.1 Consensus size: 46
38265125 TAATTTAACT
38265135 TATTACTAATACATATATTGTTCGAATATAATTTTTTAAAATTTATA
1 TATTACTAATACATATATTGTTCGAATATAATTTTTTAAAA-TTATA
* * * *
38265182 TATTACATTACTTAAATATATAT-AT-G--T-TAATATTTTTACAATTTAATTTAA
1 TATTAC--TA-ATACATATAT-TGTTCGAATATAAT-TTTTTA-AAATT-A--T-A
38265233 CTTATTACTAATACATATATTGTTCGAATATAATTTTTTAAAATTATA
1 --TATTACTAATACATATATTGTTCGAATATAATTTTTTAAAATTATA
38265281 TATTAC
1 TATTAC
38265287 ATTACTTAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 35
0.65 0.07 0.28
Matches are distributed among these distances:
46 10 0.12
47 15 0.19
48 4 0.05
49 5 0.06
50 19 0.24
51 6 0.08
52 4 0.05
53 13 0.16
54 4 0.05
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.49
Consensus pattern (46 bp):
TATTACTAATACATATATTGTTCGAATATAATTTTTTAAAATTATA
Found at i:38265319 original size:100 final size:100
Alignment explanation
Indices: 38265097--38265303 Score: 407
Period size: 100 Copynumber: 2.1 Consensus size: 100
38265087 TTAAATATAT
38265097 ATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTCGAAT
1 ATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTCGAAT
38265162 ATAATTTTTTAAAATTTATATATTACATTACTTAA
66 ATAATTTTTTAAAATTTATATATTACATTACTTAA
38265197 ATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTCGAAT
1 ATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTCGAAT
38265262 ATAATTTTTTAAAA-TTATATATTACATTACTTAA
66 ATAATTTTTTAAAATTTATATATTACATTACTTAA
38265296 ATATATAT
1 ATATATAT
38265304 TTTTAAGTAT
Statistics
Matches: 107, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
99 28 0.26
100 79 0.74
ACGTcount: A:0.41, C:0.07, G:0.03, T:0.50
Consensus pattern (100 bp):
ATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTCGAAT
ATAATTTTTTAAAATTTATATATTACATTACTTAA
Found at i:38265402 original size:13 final size:13
Alignment explanation
Indices: 38265373--38265424 Score: 68
Period size: 13 Copynumber: 4.0 Consensus size: 13
38265363 TTTTACTCTT
* *
38265373 AATATATTACATG
1 AATATATTACTTA
38265386 AATATATTACTTA
1 AATATATTACTTA
*
38265399 AATAAATTACTTA
1 AATATATTACTTA
*
38265412 AATACATTACTTA
1 AATATATTACTTA
38265425 CTAAAATTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 35 1.00
ACGTcount: A:0.48, C:0.10, G:0.02, T:0.40
Consensus pattern (13 bp):
AATATATTACTTA
Found at i:38265449 original size:53 final size:53
Alignment explanation
Indices: 38265392--38265527 Score: 209
Period size: 53 Copynumber: 2.6 Consensus size: 53
38265382 CATGAATATA
**
38265392 TTACTTAAATAAATTACTTAAATACATTACTTACTAAAATTTCGTTAAATTTT
1 TTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTCGTTAAATTTT
* * * *
38265445 TTACTTAAATATGTTACTCAGATACATTAATTACTAAAATTTGGTTAAATTTT
1 TTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTCGTTAAATTTT
*
38265498 TTACTTAAATATGTTACTTGAATACATTAC
1 TTACTTAAATATGTTACTTAAATACATTAC
38265528 CCACTATAAA
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 73 1.00
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (53 bp):
TTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTCGTTAAATTTT
Found at i:38265696 original size:9 final size:9
Alignment explanation
Indices: 38265672--38265922 Score: 175
Period size: 9 Copynumber: 28.8 Consensus size: 9
38265662 TATGTACAAG
38265672 AACTTACAT
1 AACTTACAT
* *
38265681 AATTTACAC
1 AACTTACAT
38265690 AACTTACAT
1 AACTTACAT
*
38265699 AACCTACAT
1 AACTTACAT
38265708 AACTTACAT
1 AACTTACAT
38265717 AA--TACA-
1 AACTTACAT
38265723 AAGCTTACAT
1 AA-CTTACAT
* *
38265733 AACTAAAAT
1 AACTTACAT
* *
38265742 AGCTTACAC
1 AACTTACAT
38265751 AACTTACAT
1 AACTTACAT
38265760 AACTTACAT
1 AACTTACAT
*
38265769 AACTTACAG
1 AACTTACAT
* *
38265778 AAGTTATAT
1 AACTTACAT
*
38265787 AATACATA-AT
1 -A-ACTTACAT
38265797 AACTTAC--
1 AACTTACAT
38265804 AACTTACAT
1 AACTTACAT
*
38265813 AACATACAT
1 AACTTACAT
* **
38265822 TACTTTGAT
1 AACTTACAT
38265831 AACTTACAT
1 AACTTACAT
*
38265840 AAGTTACAT
1 AACTTACAT
*
38265849 AA--TACAA
1 AACTTACAT
38265856 AACTTACAT
1 AACTTACAT
** *
38265865 AGTTTACTT
1 AACTTACAT
*
38265874 AA--TACAA
1 AACTTACAT
38265881 AACTTACAT
1 AACTTACAT
38265890 AACTT--AT
1 AACTTACAT
*
38265897 ACACGTACAT
1 A-ACTTACAT
38265907 AACTTACAT
1 AACTTACAT
*
38265916 AATTTAC
1 AACTTAC
38265923 TTAATACATA
Statistics
Matches: 184, Mismatches: 42, Indels: 32
0.71 0.16 0.12
Matches are distributed among these distances:
6 2 0.01
7 25 0.14
8 7 0.04
9 139 0.76
10 8 0.04
11 3 0.02
ACGTcount: A:0.46, C:0.20, G:0.03, T:0.31
Consensus pattern (9 bp):
AACTTACAT
Found at i:38271882 original size:41 final size:42
Alignment explanation
Indices: 38271795--38272081 Score: 425
Period size: 42 Copynumber: 6.9 Consensus size: 42
38271785 TGTATAAAAA
* * * *
38271795 CGCCGCTAAAGATCATGTTCTTTAGCGACGTTTTTTTCTTAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
* *
38271837 CGCCGCTAAAGAACATGGTCTTCAGAGGC-TTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
* *
38271878 CGCCGCTAAAGAACATGGTCTTCAGAGGC-TTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
38271919 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
* *
38271961 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCAAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
* * *
38272003 CGCCGCAAAAGAACATGTTCTTTAGTGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
* *
38272045 CGCCGCTAAAGAACATGGTCTTTAGCGACCTTTTTTT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTT
38272082 TTGTAAACGC
Statistics
Matches: 226, Mismatches: 18, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
41 79 0.35
42 147 0.65
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
Found at i:38275206 original size:45 final size:47
Alignment explanation
Indices: 38275122--38275215 Score: 129
Period size: 45 Copynumber: 2.0 Consensus size: 47
38275112 ATTAGCCAAT
* *
38275122 TATAAATAATTAATAATAAATACTATATAATTTAGTTAAA-A-TTAG
1 TATAAATAATTAATAATAAATACTATATAATTCAATTAAATATTTAG
* * *
38275167 TATAAATAATTTATAGTAAATACTATGTAATTCAATTAAATATTTAG
1 TATAAATAATTAATAATAAATACTATATAATTCAATTAAATATTTAG
38275214 TA
1 TA
38275216 GAGCAAAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
45 35 0.83
46 1 0.02
47 6 0.14
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.41
Consensus pattern (47 bp):
TATAAATAATTAATAATAAATACTATATAATTCAATTAAATATTTAG
Found at i:38276087 original size:25 final size:26
Alignment explanation
Indices: 38276059--38276108 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
38276049 AATTTAATTT
*
38276059 TTATTTTTAAAAATAA-ATAAATAAA
1 TTATTTATAAAAATAACATAAATAAA
* *
38276084 TTATTTATATAAATAACATATATAA
1 TTATTTATAAAAATAACATAAATAA
38276109 TATATCAAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (26 bp):
TTATTTATAAAAATAACATAAATAAA
Found at i:38276953 original size:15 final size:16
Alignment explanation
Indices: 38276921--38276953 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
38276911 GTGCGCGCGA
38276921 GCCTTCGCACGAGCCAC
1 GCCTTCGCAC-AGCCAC
38276938 GCCTTCGCAC-GCCAC
1 GCCTTCGCACAGCCAC
38276953 G
1 G
38276954 TCCGCACCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
17 10 0.62
ACGTcount: A:0.15, C:0.48, G:0.24, T:0.12
Consensus pattern (16 bp):
GCCTTCGCACAGCCAC
Found at i:38282803 original size:6 final size:6
Alignment explanation
Indices: 38282739--38282778 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
38282729 CAGATTAAAA
38282739 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
38282779 AAGAAAAGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.70, C:0.15, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATC
Found at i:38282807 original size:20 final size:19
Alignment explanation
Indices: 38282769--38282815 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
38282759 AATCAAAATC
38282769 AAAATCAAAAAAGAAAAGA
1 AAAATCAAAAAAGAAAAGA
38282788 AAAATCAAAAGCAA-AAAAGA
1 AAAATCAAAA--AAGAAAAGA
*
38282808 GAAATCAA
1 AAAATCAA
38282816 TCAAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 10 0.40
20 13 0.52
21 2 0.08
ACGTcount: A:0.74, C:0.09, G:0.11, T:0.06
Consensus pattern (19 bp):
AAAATCAAAAAAGAAAAGA
Found at i:38283262 original size:14 final size:14
Alignment explanation
Indices: 38283225--38283254 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
38283215 AAAACAAAAA
38283225 AAAATG-AAAAATG
1 AAAATGAAAAAATG
38283238 AAAATGAAAAAATG
1 AAAATGAAAAAATG
38283252 AAA
1 AAA
38283255 GAGTAAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (14 bp):
AAAATGAAAAAATG
Found at i:38284614 original size:87 final size:87
Alignment explanation
Indices: 38284498--38284853 Score: 541
Period size: 87 Copynumber: 4.1 Consensus size: 87
38284488 AGATTAGTGA
* * * * * *
38284498 AGATCCAAAACAAAGCTTTGCCTCCATCGGTTGCAGTGGAGCTGGTTGAAGATAACAGGTCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGATGTAGTGGAGCTGGTTAAAGATAACAGATCTTGC
*
38284563 CTTCCTGCATTAACAGTGAAGT
66 CTTCCTGCATTAACAGTGAAGC
* * *
38284585 AGATCGAAAACAAAGCCTTGCCTCTATCGGATGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGATGTAGTGGAGCTGGTTAAAGATAACAGATCTTGC
* *
38284650 CTTCTTGCATTAACAGTGAAGT
66 CTTCCTGCATTAACAGTGAAGC
38284672 AGATCGAAAACAAAGCCTTGCCTCCATCGGATGTAGTGGAGCTGGTTAAAGATAACAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGATGTAGTGGAGCTGGTTAAAGATAACAGATCTTGC
**
38284737 CTTCCTGCATTAACAGCAAAGC
66 CTTCCTGCATTAACAGTGAAGC
* * *
38284759 AGATCGAAAACAAAGCCTTGCCTCCATCGGATGTAGTGGAGTTGGTTAAAGATAGCAAATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGATGTAGTGGAGCTGGTTAAAGATAACAGATCTTGC
* *
38284824 CTTCCTGCGTTAACAGTGGAGC
66 CTTCCTGCATTAACAGTGAAGC
38284846 AGATCGAA
1 AGATCGAA
38284854 GACGGCAAAT
Statistics
Matches: 247, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 247 1.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (87 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCGGATGTAGTGGAGCTGGTTAAAGATAACAGATCTTGC
CTTCCTGCATTAACAGTGAAGC
Found at i:38284694 original size:43 final size:43
Alignment explanation
Indices: 38284558--38284694 Score: 106
Period size: 43 Copynumber: 3.2 Consensus size: 43
38284548 GATAACAGGT
*
38284558 CTTGCCTTCCTGCATTAACAGTGAAGTAGATCGAAAACAAAGC
1 CTTGCCTTCTTGCATTAACAGTGAAGTAGATCGAAAACAAAGC
* * * * * *
38284601 CTTGCC-TCTATCGGATGT---AGTGGAGCT-GGTTGAAGATAGCAGA-T
1 CTTGCCTTCT-T-GCAT-TAACAGTGAAG-TAGATCGAA-A-A-CAAAGC
38284645 CTTGCCTTCTTGCATTAACAGTGAAGTAGATCGAAAACAAAGC
1 CTTGCCTTCTTGCATTAACAGTGAAGTAGATCGAAAACAAAGC
38284688 CTTGCCT
1 CTTGCCT
38284695 CCATCGGATG
Statistics
Matches: 68, Mismatches: 13, Indels: 26
0.64 0.12 0.24
Matches are distributed among these distances:
42 17 0.25
43 20 0.29
44 13 0.19
45 18 0.26
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (43 bp):
CTTGCCTTCTTGCATTAACAGTGAAGTAGATCGAAAACAAAGC
Found at i:38284886 original size:45 final size:44
Alignment explanation
Indices: 38284837--38284981 Score: 152
Period size: 44 Copynumber: 3.3 Consensus size: 44
38284827 CCTGCGTTAA
38284837 CAGTGGAGCAGATCGAAGACGGCAAATCTTATCTCCCTGAGGTTG
1 CAGTGGAGCAGA-CGAAGACGGCAAATCTTATCTCCCTGAGGTTG
* * * * **
38284882 CAGTGGAGCAGACTG-AGAAGACAAGTCTTAT-TCCCCTGAAGTCA
1 CAGTGGAGCAGAC-GAAGACGGCAAATCTTATCT-CCCTGAGGTTG
* * *
38284926 CAGTGGGGCAGACCAA-ACAAGCAAATCTTATCTCCCTGAGGTTG
1 CAGTGGAGCAGACGAAGAC-GGCAAATCTTATCTCCCTGAGGTTG
38284970 CAGTGGAGCAGA
1 CAGTGGAGCAGA
38284982 TTGAAGTCGA
Statistics
Matches: 79, Mismatches: 16, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
43 2 0.03
44 63 0.80
45 14 0.18
ACGTcount: A:0.30, C:0.23, G:0.28, T:0.20
Consensus pattern (44 bp):
CAGTGGAGCAGACGAAGACGGCAAATCTTATCTCCCTGAGGTTG
Found at i:38285443 original size:15 final size:16
Alignment explanation
Indices: 38285411--38285443 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
38285401 GTGCGCGCGA
38285411 GCCTTCGCACGAGCCAC
1 GCCTTCGCAC-AGCCAC
38285428 GCCTTCGCAC-GCCAC
1 GCCTTCGCACAGCCAC
38285443 G
1 G
38285444 TTCGCACCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
17 10 0.62
ACGTcount: A:0.15, C:0.48, G:0.24, T:0.12
Consensus pattern (16 bp):
GCCTTCGCACAGCCAC
Found at i:38295795 original size:27 final size:26
Alignment explanation
Indices: 38295747--38295804 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
38295737 AACAAGTTAT
*
38295747 TTTTAAAAAATTAAAATCATTAAAATTA
1 TTTTAAAAAAATAAAA-CATT-AAATTA
*
38295775 TTTTAAAAATAATAAAA-ATTATATTA
1 TTTTAAAAA-AATAAAACATTAAATTA
38295801 TTTT
1 TTTT
38295805 TTTATTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 9 0.33
27 3 0.11
28 9 0.33
29 6 0.22
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (26 bp):
TTTTAAAAAAATAAAACATTAAATTA
Found at i:38295987 original size:3 final size:3
Alignment explanation
Indices: 38295979--38296013 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
38295969 TATGTTACAT
38295979 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
38296014 TTATTATTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:38296018 original size:3 final size:3
Alignment explanation
Indices: 38296012--38296042 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
38296002 ATAATAATAA
38296012 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
38296043 TGAACTCAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:38299705 original size:2 final size:2
Alignment explanation
Indices: 38299698--38299736 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
38299688 TTGATACTTT
38299698 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
38299737 TATTTNNNNN
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:38301570 original size:8 final size:8
Alignment explanation
Indices: 38301559--38301647 Score: 92
Period size: 8 Copynumber: 11.0 Consensus size: 8
38301549 AAAAAAGTTT
*
38301559 TTTTTAAG
1 TTTTTAAA
38301567 TTTTTAAA
1 TTTTTAAA
*
38301575 ATTTTAAA
1 TTTTTAAA
38301583 TTTTTAATA
1 TTTTTAA-A
*
38301592 ATTTTAATA
1 TTTTTAA-A
*
38301601 ATTTTAAA
1 TTTTTAAA
38301609 -TTTTAAA
1 TTTTTAAA
38301616 -TTTTAAA
1 TTTTTAAA
*
38301623 TTTTTGAAT
1 TTTTT-AAA
38301632 TTTTTAAA
1 TTTTTAAA
38301640 TTTTTAAA
1 TTTTTAAA
38301648 AAATTAATTA
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
7 14 0.19
8 35 0.49
9 23 0.32
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (8 bp):
TTTTTAAA
Found at i:38301643 original size:7 final size:7
Alignment explanation
Indices: 38301568--38301626 Score: 64
Period size: 7 Copynumber: 7.6 Consensus size: 7
38301558 TTTTTTAAGT
38301568 TTTTAAAA
1 TTTT-AAA
38301576 TTTTAAA
1 TTTTAAA
38301583 TTTTTAATAA
1 -TTTT-A-AA
38301593 TTTTAATAA
1 TTTT-A-AA
38301602 TTTTAAA
1 TTTTAAA
38301609 TTTTAAA
1 TTTTAAA
38301616 TTTTAAA
1 TTTTAAA
38301623 TTTT
1 TTTT
38301627 TGAATTTTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
7 23 0.48
8 9 0.19
9 14 0.29
10 2 0.04
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
TTTTAAA
Found at i:38303851 original size:16 final size:16
Alignment explanation
Indices: 38303820--38303849 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
38303810 TGTGTCTCTT
38303820 TTTTTTTAAATATTTA
1 TTTTTTTAAATATTTA
38303836 TTTTTTT-AATATTT
1 TTTTTTTAAATATTT
38303850 TACTATAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTTTTAAATATTTA
Found at i:38307023 original size:6 final size:6
Alignment explanation
Indices: 38307014--38307048 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
38307004 GATTTTCTCC
38307014 AAAATG AAAATG AAAATG AAAATGG AGAAATG AAA
1 AAAATG AAAATG AAAATG AAAAT-G A-AAATG AAA
38307049 TAATTTAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 19 0.70
7 4 0.15
8 4 0.15
ACGTcount: A:0.66, C:0.00, G:0.20, T:0.14
Consensus pattern (6 bp):
AAAATG
Found at i:38310045 original size:6 final size:6
Alignment explanation
Indices: 38310034--38310063 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
38310024 GTTAGCGAAC
38310034 AAATAT AAATAT AAATAT AAATAT AAATAT
1 AAATAT AAATAT AAATAT AAATAT AAATAT
38310064 TTATGTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
AAATAT
Found at i:38310945 original size:17 final size:16
Alignment explanation
Indices: 38310908--38310946 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
38310898 AATAAGCAAT
38310908 TAAA-TAAATTGGAAA
1 TAAATTAAATTGGAAA
38310923 TAAAATTAAATTGGAAA
1 T-AAATTAAATTGGAAA
38310940 GTAAATT
1 -TAAATT
38310947 TGGATTTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 1 0.05
16 3 0.14
17 16 0.76
18 1 0.05
ACGTcount: A:0.56, C:0.00, G:0.13, T:0.31
Consensus pattern (16 bp):
TAAATTAAATTGGAAA
Found at i:38319281 original size:82 final size:82
Alignment explanation
Indices: 38319183--38319462 Score: 411
Period size: 82 Copynumber: 3.4 Consensus size: 82
38319173 TCTGTTGGCC
* * * * *
38319183 GGCAGGATTAAATCCCGAAACAGAATTATTTAATTAAATCTTGTTTGGAAACAAAATCAAAATCG
1 GGCAGGAATAAATCCCGAAACAGAATTATTCAATTAATTCTCGTTTGGAAACAAAATCAAAATGG
*
38319248 AATAAAATCTCTTAAAT
66 AATAAAATCTGTTAAAT
* *
38319265 GGCAGGAATAAATCCCGAAACAGAATTATTCAATTAATTATCGTGTGGAAACAAAATCAAAATGG
1 GGCAGGAATAAATCCCGAAACAGAATTATTCAATTAATTCTCGTTTGGAAACAAAATCAAAATGG
* *
38319330 AATAAAATCTGTTGAAC
66 AATAAAATCTGTTAAAT
* *
38319347 GGCGGGAATAAATCCCGAAACAGAATTATTCAATTAATTCTCATTTGGAAACAAAATCAAAATGG
1 GGCAGGAATAAATCCCGAAACAGAATTATTCAATTAATTCTCGTTTGGAAACAAAATCAAAATGG
*
38319412 AATAAAATCTGTTCAAT
66 AATAAAATCTGTTAAAT
*
38319429 GGC-GAGAATAAA-CCCGAAACAGAATTGTTCAATT
1 GGCAG-GAATAAATCCCGAAACAGAATTATTCAATT
38319463 TTAATTTTTT
Statistics
Matches: 180, Mismatches: 17, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
81 22 0.12
82 158 0.88
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.26
Consensus pattern (82 bp):
GGCAGGAATAAATCCCGAAACAGAATTATTCAATTAATTCTCGTTTGGAAACAAAATCAAAATGG
AATAAAATCTGTTAAAT
Found at i:38320822 original size:40 final size:40
Alignment explanation
Indices: 38320777--38320911 Score: 107
Period size: 40 Copynumber: 3.4 Consensus size: 40
38320767 GTTTGGAACA
*
38320777 AAAGCGCCACAAAAAATCGAGCATTAGCGGCGATTTATCC
1 AAAGCGCCACAAAAAATAGAGCATTAGCGGCGATTTATCC
* * **
38320817 AAAGCGCCGCTAAAGGTAGAGC-TTCAGCGGCGA-TTATCC
1 AAAGCGCCACAAAAAATAGAGCATT-AGCGGCGATTTATCC
* * * * * * *
38320856 GGAAGTGCCGCTAAAAATAG-GAATTAGCGGCGTTTTA-CAT
1 -AAAGCGCCACAAAAAATAGAGCATTAGCGGCGATTTATC-C
38320896 AAAGCGCCACAAAAAA
1 AAAGCGCCACAAAAAA
38320912 CCTAAGACCA
Statistics
Matches: 74, Mismatches: 16, Indels: 11
0.73 0.16 0.11
Matches are distributed among these distances:
39 29 0.39
40 45 0.61
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (40 bp):
AAAGCGCCACAAAAAATAGAGCATTAGCGGCGATTTATCC
Found at i:38321007 original size:41 final size:41
Alignment explanation
Indices: 38320950--38321170 Score: 309
Period size: 41 Copynumber: 5.4 Consensus size: 41
38320940 TTTTTTAAAC
*
38320950 CTTTAGCGGCGTTTTTGTGTAAGCGCCGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGTATAAGCGCCGCTAATGCTCGGAT
* * *
38320991 CTTTAGCGGCGTTTTTGTCTAGGCGCCGCTAATGCTC-AAGT
1 CTTTAGCGGCGTTTTTGTATAAGCGCCGCTAATGCTCGGA-T
* * *
38321032 CTTTAGCGGCGTTTTCGTATAGGTGCCGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGTATAAGCGCCGCTAATGCTCGGAT
* *
38321073 CTTTAGCGGCGTTTTTGTCTATGCGCCGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGTATAAGCGCCGCTAATGCTCGGAT
* * * *
38321114 CTTTAGCGGCGTTTTTATACAAGAGCCGCTAATACTCGGAT
1 CTTTAGCGGCGTTTTTGTATAAGCGCCGCTAATGCTCGGAT
38321155 CTTTAGCGGCGTTTTT
1 CTTTAGCGGCGTTTTT
38321171 AACTGAGCGC
Statistics
Matches: 161, Mismatches: 17, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
40 1 0.01
41 159 0.99
42 1 0.01
ACGTcount: A:0.15, C:0.23, G:0.27, T:0.35
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGTATAAGCGCCGCTAATGCTCGGAT
Found at i:38321171 original size:41 final size:40
Alignment explanation
Indices: 38320950--38321269 Score: 288
Period size: 41 Copynumber: 7.8 Consensus size: 40
38320940 TTTTTTAAAC
*
38320950 CTTTAGCGGCGTTTTTGTGTAAGCGCCGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGT-CAAGCGCCGCTAATGCTCGGAT
* *
38320991 CTTTAGCGGCGTTTTTGTCTAGGCGCCGCTAATGCTC-AAGT
1 CTTTAGCGGCGTTTTTGTC-AAGCGCCGCTAATGCTCGGA-T
* *
38321032 CTTTAGCGGCGTTTTCGT-ATAGGTGCCGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGTCA-A-GCGCCGCTAATGCTCGGAT
*
38321073 CTTTAGCGGCGTTTTTGTCTATGCGCCGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTGTC-AAGCGCCGCTAATGCTCGGAT
* * *
38321114 CTTTAGCGGCGTTTTTATACAAGAGCCGCTAATACTCGGAT
1 CTTTAGCGGCGTTTTTGT-CAAGCGCCGCTAATGCTCGGAT
** * * * * *
38321155 CTTTAGCGGCGTTTTTAACTGAGCGCCACTATTTCTCTTG-T
1 CTTTAGCGGCGTTTTTGTC-AAGCGCCGCTAATGCTC-GGAT
* * * ** *
38321196 CTTCAGCGGCGTTTGTATCTAAGCGCCGCTAATG-TATTGAC
1 CTTTAGCGGCGTTTTTGTC-AAGCGCCGCTAATGCT-CGGAT
**
38321237 CTTTAGCGGCGTTTTTACCGAAGCGCCGCTAAT
1 CTTTAGCGGCGTTTTTGTC-AAGCGCCGCTAAT
38321270 AGTAGCAAAA
Statistics
Matches: 233, Mismatches: 34, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
39 1 0.00
40 5 0.02
41 223 0.96
42 3 0.01
43 1 0.00
ACGTcount: A:0.17, C:0.24, G:0.25, T:0.34
Consensus pattern (40 bp):
CTTTAGCGGCGTTTTTGTCAAGCGCCGCTAATGCTCGGAT
Found at i:38321204 original size:123 final size:122
Alignment explanation
Indices: 38320954--38321270 Score: 340
Period size: 123 Copynumber: 2.6 Consensus size: 122
38320944 TTAAACCTTT
* * * *
38320954 AGCGGCGTTTTTGTGTAAGCGCCGCTAATGCTCGGATCTTTAGCGGCGTTTTTGTCTAGGCGCCG
1 AGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGGATCTTTAGCGGCGTTTTTATCGAAGCGCCG
* * * *
38321019 CTAATGCTCAAGTCTTTAGCGGCGTTTTCGTATAGGTGCCGCTAATGCTCGGATCTTT
66 CTAATACTCAAGTCTTTAGCGGCGTTTTC-TATAGGCGCCACTAATGCTCGGATCTTC
* *
38321077 AGCGGCGTTTTTGTCTATGCGCCGCTAATGCTCGGATCTTTAGCGGCGTTTTTATAC-AAGAGCC
1 AGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGGATCTTTAGCGGCGTTTTTAT-CGAAGCGCC
* * * *
38321141 GCTAATACTC-GGATCTTTAGCGGCGTTTT-TA-ACTGAGCGCCACTATTTCTCTTG-TCTTC
65 GCTAATACTCAAG-TCTTTAGCGGCGTTTTCTATA--G-GCGCCACTAATGCTC-GGATCTTC
* * ** * *
38321200 AGCGGCGTTTGTATCTAAGCGCCGCTAATG-TATTGACCTTTAGCGGCGTTTTTACCGAAGCGCC
1 AGCGGCGTTTTTGTCTAAGCGCCGCTAATGCT-CGGATCTTTAGCGGCGTTTTTATCGAAGCGCC
38321264 GCTAATA
65 GCTAATA
38321271 GTAGCAAAAA
Statistics
Matches: 165, Mismatches: 21, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
120 1 0.01
121 2 0.01
122 4 0.02
123 156 0.95
124 2 0.01
ACGTcount: A:0.17, C:0.24, G:0.26, T:0.34
Consensus pattern (122 bp):
AGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGGATCTTTAGCGGCGTTTTTATCGAAGCGCCG
CTAATACTCAAGTCTTTAGCGGCGTTTTCTATAGGCGCCACTAATGCTCGGATCTTC
Found at i:38332991 original size:66 final size:65
Alignment explanation
Indices: 38332883--38333054 Score: 195
Period size: 66 Copynumber: 2.6 Consensus size: 65
38332873 TGAGCAAATT
* * * * *
38332883 ACACAACTTAAAGCGGAGGCAACATCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCC
1 ACACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAG-TATAAAGAACTCC
38332947 A
65 A
* * *
38332948 GCTACAACTGAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAGTATAAAGAACTCC
1 AC-ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATAAAGAACTCC
38333013 A
65 A
* * *
38333014 ACAGTAGCTTAAAGCAGATGC-GACAGCGAGAGAAGCAGAGG
1 ACA-CAACTTAAAGCAGATGCAG-CAGCGAGAGAAGCTGAGG
38333055 CGGCAGCGAG
Statistics
Matches: 90, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
65 3 0.03
66 83 0.92
67 4 0.04
ACGTcount: A:0.42, C:0.19, G:0.27, T:0.13
Consensus pattern (65 bp):
ACACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATAAAGAACTCCA
Found at i:38333049 original size:21 final size:20
Alignment explanation
Indices: 38333025--38333158 Score: 142
Period size: 21 Copynumber: 6.4 Consensus size: 20
38333015 CAGTAGCTTA
*
38333025 AAGCAGATGCGACAGCGAGAG
1 AAGCAGAGGCG-CAGCGAGAG
38333046 AAGCAGAGGCGGCAGCGAGAG
1 AAGCAGAGGC-GCAGCGAGAG
38333067 AAGCAGAGGCGGCAGCGAGAG
1 AAGCAGAGGC-GCAGCGAGAG
* * *
38333088 AAGTACAGGCTGCAGCGAGGG
1 AAGCAGAGGC-GCAGCGAGAG
** *
38333109 AAGCAGAGGCTAAAGCGAGGG
1 AAGCAGAGGC-GCAGCGAGAG
*
38333130 AAGCAGAGGCTGCAGCGAGGG
1 AAGCAGAGGC-GCAGCGAGAG
38333151 AAGCAGAG
1 AAGCAGAG
38333159 CAGCGTCAAA
Statistics
Matches: 101, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
21 100 0.99
22 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.44, T:0.04
Consensus pattern (20 bp):
AAGCAGAGGCGCAGCGAGAG
Found at i:38333084 original size:42 final size:42
Alignment explanation
Indices: 38333025--38333158 Score: 187
Period size: 42 Copynumber: 3.2 Consensus size: 42
38333015 CAGTAGCTTA
* * *
38333025 AAGCAGATGCGACAGCGAGAGAAGCAGAGGCGGCAGCGAGAG
1 AAGCAGAGGCGACAGCGAGAGAAGCAGAGGCTGCAGCGAGGG
* * *
38333067 AAGCAGAGGCGGCAGCGAGAGAAGTACAGGCTGCAGCGAGGG
1 AAGCAGAGGCGACAGCGAGAGAAGCAGAGGCTGCAGCGAGGG
* * *
38333109 AAGCAGAGGCTAAAGCGAGGGAAGCAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCGACAGCGAGAGAAGCAGAGGCTGCAGCGAGGG
38333151 AAGCAGAG
1 AAGCAGAG
38333159 CAGCGTCAAA
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 80 1.00
ACGTcount: A:0.34, C:0.18, G:0.44, T:0.04
Consensus pattern (42 bp):
AAGCAGAGGCGACAGCGAGAGAAGCAGAGGCTGCAGCGAGGG
Found at i:38333352 original size:26 final size:24
Alignment explanation
Indices: 38333318--38333375 Score: 64
Period size: 26 Copynumber: 2.4 Consensus size: 24
38333308 AGAATAATAC
*
38333318 GATTT-TTATTTATTTATTAATATT
1 GATTTATTATTTATTTAAT-ATATT
* *
38333342 TATTATATTATTTGTTTAATATATT
1 GATT-TATTATTTATTTAATATATT
38333367 GATTTATTA
1 GATTTATTA
38333376 CTTTTGGCTG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 8 0.29
25 9 0.32
26 11 0.39
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (24 bp):
GATTTATTATTTATTTAATATATT
Found at i:38333612 original size:86 final size:84
Alignment explanation
Indices: 38333507--38333819 Score: 326
Period size: 86 Copynumber: 3.7 Consensus size: 84
38333497 AGGTGTTGGC
38333507 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTGGAAAA
1 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTG-GGAAAA
*
38333572 AGCGCCACTAAAGATCATAGT
65 AGCGCCGCTAAAGATCAT-GT
* * * **
38333593 CTTTAGTGGCGTTTGTGGTCAAAGCGCCGCTATAGATCAGGGTCTATT-GCGGCGTTTGAGGGGA
1 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGTCT-TTAGCGGCGTTTG-GGAAA
* *
38333657 AAGCGCCGCTAAAGACCCTGAT
64 AAGCGCCGCTAAAGATCATG-T
* * * * *
38333679 CTTTAGTGGCGTTTTTGG-GAGAAGCGCCGCTAAAGATAAGGGTCTTTAGCGACATTTGAGAGAG
1 CTTTAGTGGCGTTTTTGGTCA-AAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGGGA-AA
* *
38333743 AAGTGCCGCTAAAGATCAGGGT
64 AAGCGCCGCTAAAGATCA-TGT
* * * ** * *
38333765 CTTTAGCGGCGCTTCT-CCCAAAAACGCCGCTAAAGATCAGGGTCTTTAGCGGCGT
1 CTTTAGTGGCGTTTTTGGTC-AAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGT
38333820 CTGTTGCGGT
Statistics
Matches: 187, Mismatches: 32, Indels: 16
0.80 0.14 0.07
Matches are distributed among these distances:
85 5 0.03
86 178 0.95
87 4 0.02
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (84 bp):
CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGGGAAAAA
GCGCCGCTAAAGATCATGT
Found at i:38333744 original size:43 final size:42
Alignment explanation
Indices: 38333528--38333819 Score: 264
Period size: 43 Copynumber: 6.8 Consensus size: 42
38333518 TTTTTGGTCA
* *
38333528 AAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTGGAAA
1 AAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGG-AG
* ** *
38333571 AAGCGCCACTAAAGATCATAGTCTTTAGTGGCGTTTGTGGTCA-
1 AAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGG--AG
* * *
38333614 AAGCGCCGCTATAGATCAGGGTCTATT-GCGGCGTTTGAGGGG
1 AAGCGCCGCTAAAGATCAGGGTCT-TTAGCGGCGTTTGTGGAG
* ** * * *
38333656 AAAGCGCCGCTAAAGACCCTGATCTTTAGTGGCGTTTTTGGGAG
1 -AAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGT-GGAG
* * * *
38333700 AAGCGCCGCTAAAGATAAGGGTCTTTAGCGACATTTGAGAGAG
1 AAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTG-GAG
* * * ** *
38333743 AAGTGCCGCTAAAGATCAGGGTCTTTAGCGGCGCTTCTCCCAA
1 AAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGT-GGAG
*
38333786 AAACGCCGCTAAAGATCAGGGTCTTTAGCGGCGT
1 AAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGT
38333820 CTGTTGCGGT
Statistics
Matches: 196, Mismatches: 45, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
42 3 0.02
43 187 0.95
44 6 0.03
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.24
Consensus pattern (42 bp):
AAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGAG
Found at i:38333894 original size:22 final size:22
Alignment explanation
Indices: 38333866--38333908 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
38333856 CTGCTGCGCT
*
38333866 AAAAAGCGCCGCTAAAGGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
38333888 AAAAAGCGCCGCTAAAAGCCT
1 AAAAAGCGCCGCTAAAAGCCT
38333909 GTTTTGGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.42, C:0.28, G:0.21, T:0.09
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAGCCTA
Found at i:38336178 original size:9 final size:9
Alignment explanation
Indices: 38336152--38336185 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
38336142 ATTACACCCT
*
38336152 TTAAAAATT
1 TTAAAAATA
38336161 TTAAAAATA
1 TTAAAAATA
38336170 TTAAAAATA
1 TTAAAAATA
38336179 TATAAAA
1 T-TAAAA
38336186 TTTATAACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 18 0.78
10 5 0.22
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (9 bp):
TTAAAAATA
Found at i:38336198 original size:21 final size:20
Alignment explanation
Indices: 38336163--38336219 Score: 62
Period size: 21 Copynumber: 2.9 Consensus size: 20
38336153 TAAAAATTTT
* *
38336163 AAAAA-TATTAAAAATATAT
1 AAAAACTATAAAAAATATAA
**
38336182 AAAATTTATAACAAAATATAA
1 AAAAACTATAA-AAAATATAA
38336203 AAAAACTATAAAAAATA
1 AAAAACTATAAAAAATA
38336220 ACAATACCAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 4 0.13
20 10 0.32
21 17 0.55
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (20 bp):
AAAAACTATAAAAAATATAA
Found at i:38336206 original size:9 final size:9
Alignment explanation
Indices: 38336163--38336219 Score: 51
Period size: 10 Copynumber: 5.8 Consensus size: 9
38336153 TAAAAATTTT
38336163 AAAAATATTA
1 AAAAATA-TA
38336173 AAAATATATA
1 AAAA-ATATA
**
38336183 AAATTTATA
1 AAAAATATA
38336192 ACAAAATATAA
1 A-AAAATAT-A
38336203 AAAAACTATA
1 AAAAA-TATA
38336213 AAAAATA
1 AAAAATA
38336220 ACAATACCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
9 7 0.18
10 24 0.62
11 8 0.21
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (9 bp):
AAAAATATA
Found at i:38336351 original size:27 final size:26
Alignment explanation
Indices: 38336286--38336353 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 26
38336276 ACTTCTTTTA
* *
38336286 TAAATTTTGTTTATAATTTATATGATTT
1 TAAATTTT-TTTA-AATTTAAAAGATTT
* **
38336314 TTAATAATTTTAAATTTTAAAAGATTT
1 TAAATTTTTTTAAA-TTTAAAAGATTT
38336341 TAAATTTTTTTAA
1 TAAATTTTTTTAA
38336354 TTTGTTACTA
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
26 2 0.06
27 24 0.77
28 5 0.16
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.57
Consensus pattern (26 bp):
TAAATTTTTTTAAATTTAAAAGATTT
Found at i:38337808 original size:18 final size:19
Alignment explanation
Indices: 38337781--38337816 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
38337771 AATAGTTACT
*
38337781 AAAAATTTATTT-ATAAAC
1 AAAAAATTATTTAATAAAC
38337799 AAAAAATTATTTAATAAA
1 AAAAAATTATTTAATAAA
38337817 AACTATGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAAATTATTTAATAAAC
Found at i:38343347 original size:50 final size:50
Alignment explanation
Indices: 38343219--38343516 Score: 283
Period size: 50 Copynumber: 5.9 Consensus size: 50
38343209 TGAATATAAC
* * * ** * * *
38343219 GTGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTCTTGTA-
1 GTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAG
* * * * **
38343268 CTGCCAATGCCATATCCCAAATATGGTCTTACATGGGAGTTCTCATATAG
1 GTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAG
* * ** * * *
38343318 GTGCCCATGCGATGTCCCAGACATGGTCTTACGGGGGACCTCTTATCTCG
1 GTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAG
* * * * *
38343368 GTGCCAACGCCATGTTCCATACATGGTCTTACATGGGACCTCTCATCTCG
1 GTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAG
*
38343418 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATG
1 GTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--T--A-G
*
38343474 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 GTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
38343517 TTACCCAAAT
Statistics
Matches: 203, Mismatches: 39, Indels: 7
0.82 0.16 0.03
Matches are distributed among these distances:
49 37 0.18
50 123 0.61
53 1 0.00
56 42 0.21
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
GTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAG
Found at i:38348697 original size:12 final size:13
Alignment explanation
Indices: 38348680--38348708 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
38348670 AGCATTAAGA
38348680 TCTTTACTTTCT-
1 TCTTTACTTTCTC
38348692 TCTTTACTTTCTC
1 TCTTTACTTTCTC
38348705 TCTT
1 TCTT
38348709 ACTCGTTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.07, C:0.28, G:0.00, T:0.66
Consensus pattern (13 bp):
TCTTTACTTTCTC
Found at i:38349046 original size:50 final size:50
Alignment explanation
Indices: 38348918--38349215 Score: 247
Period size: 50 Copynumber: 5.9 Consensus size: 50
38348908 TGAATATAAC
* * * ** * * *
38348918 GTGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTCTTGTA-
1 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAG
* * * * * ** *
38348967 CTGCCAATGCCATATCCCAAATATGGTCTTACATGGGAGTTCTCATATAG
1 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAG
* * * ** * **
38349017 GTGCCCATGCGATGTCCCAGACATGGTCTTACGGGGGACCTCTTATCTCT
1 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAG
* * *
38349067 GTGCCAACGCCATGTTCCATACATGGTCTTACATGGGACCTCTCATCTCG
1 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAG
*
38349117 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATAATCTCAATG
1 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCT--A-G
* * * *
38349173 ATACCAATGCCATGTCCCAGGCATGGTCTTACATGGGACCTCT
1 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
38349216 TTACCCAAAT
Statistics
Matches: 198, Mismatches: 44, Indels: 7
0.80 0.18 0.03
Matches are distributed among these distances:
49 37 0.19
50 118 0.60
53 4 0.02
56 39 0.20
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAG
Found at i:38349157 original size:100 final size:104
Alignment explanation
Indices: 38348970--38349215 Score: 275
Period size: 100 Copynumber: 2.4 Consensus size: 104
38348960 TCTTGTACTG
* * * * ** * * *
38348970 CCAATGCCATATCCCAAATATGGTCTTACATGGGAGTTCTCATATAGGTGCCCATGCGATGTCCC
1 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTGCCAACGCCATGTCCC
* * *
38349035 AGACATGGTCTTACGGGGGACCTCT-T-ATCTC-TG-TG
66 AGACATGGTCTTACAGGAGACCTCTATAATCTCATGATA
* * * *
38349070 CCAACGCCATGTTCCATACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCC
1 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTGCCAACGCCATGTCCC
*
38349135 AGACATGGTCTTACATGAGACCTCTCATAATCTCAATGATA
66 AGACATGGTCTTACAGGAGACCTCT-ATAATCTC-ATGATA
* *
38349176 CCAATGCCATGTCCCAGGCATGGTCTTACATGGGACCTCT
1 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
38349216 TTACCCAAAT
Statistics
Matches: 120, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
100 75 0.62
102 1 0.01
103 5 0.04
105 2 0.02
106 37 0.31
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (104 bp):
CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTGCCAACGCCATGTCCC
AGACATGGTCTTACAGGAGACCTCTATAATCTCATGATA
Found at i:38355532 original size:44 final size:44
Alignment explanation
Indices: 38355442--38355641 Score: 128
Period size: 44 Copynumber: 4.7 Consensus size: 44
38355432 TCAACTTGCC
* * *
38355442 CCACTGCAACTTCAGGGGGATAAGGTTTGTGGTTTTAGTCTGCT
1 CCACTGCAACTTCAGGGAGATAAGGATTGTGGTTTTAGTCTACT
* *
38355486 CCACTGCAACTTCAGGGAGAT-AGGATTG-GTTTCTTCTGTCTACT
1 CCACTGCAACTTCAGGGAGATAAGGATTGTGGTT-TT-AGTCTACT
* ** ** * *** *
38355530 CCACTACTGCTT-AGGGAGATAA-GA-CATGATGCGA-TCTGCT
1 CCACTGCAACTTCAGGGAGATAAGGATTGTGGTTTTAGTCTACT
* * * * **
38355570 CTACTACAACTTCAGAGAGATAA-GATCTGTGGTTTTAATCCGCT
1 CCACTGCAACTTCAGGGAGATAAGGAT-TGTGGTTTTAGTCTACT
38355614 CCACTGCAACTTCAGGGAGAT-AGGATTG
1 CCACTGCAACTTCAGGGAGATAAGGATTG
38355642 GTTTTTTTCT
Statistics
Matches: 117, Mismatches: 30, Indels: 19
0.70 0.18 0.11
Matches are distributed among these distances:
40 14 0.12
41 11 0.09
42 3 0.03
43 27 0.23
44 62 0.53
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.30
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGATAAGGATTGTGGTTTTAGTCTACT
Found at i:38355850 original size:128 final size:128
Alignment explanation
Indices: 38355444--38356001 Score: 848
Period size: 128 Copynumber: 4.4 Consensus size: 128
38355434 AACTTGCCCC
* * * * * *
38355444 ACTGCAACTTCAGGGGGATAAGGTTTGTGGTTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAG
1 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAG
* *
38355509 GATTGGTTTCTTCTGTCTACTCCACTACTGCTTAGGGAGATAAGACATGATGCGATCTGCTCT
66 GATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCT
*
38355572 ACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAG
1 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAG
* * *
38355637 GATTGGTTTTTTTCTGTCTGCTCCACTACTAG-TGAGGGAGATAAGACTGGATGCGATCTGCTCT
66 GATTGG-TTTCTTCTGTCTGCTCCACTACT-GCTTAGGGAGATAAGACTTGATGCGATCTGCTCT
* * * * * *
38355701 ACTGCAAGTTCAGAGAAATAAGATCTGTGGTTTTAATCTGCTTCACTGTAACTTTAGGGAGATAG
1 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAG
* * * *
38355766 GATTGGTTTCTTCTATCTGCTCTACTACTGCTTAGGGAGATAAGACTTGATGCAATCTGTTCT
66 GATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCT
*
38355829 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAG
1 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAG
* * * *
38355894 GATTGGTTTCTTCTTTCTGCTCCACTATTGCTTAGAGAGATAAGACTTGATGTGATCTGCTCT
66 GATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCT
38355957 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCA
1 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCA
38356002 TTACTGCTTA
Statistics
Matches: 389, Mismatches: 38, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
127 1 0.00
128 273 0.70
129 114 0.29
130 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (128 bp):
ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAG
GATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCT
Found at i:38355900 original size:257 final size:256
Alignment explanation
Indices: 38355444--38356001 Score: 848
Period size: 257 Copynumber: 2.2 Consensus size: 256
38355434 AACTTGCCCC
* ** * * *
38355444 ACTGCAACTTCAGGGGGATAAGGTTTGTGGTTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAG
1 ACTGCAACTTCAGAGAAATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAG
* *
38355509 GATTGGTTTCTTCTGTCTACTCCACTACTGCTTAGGGAGATAAGACATGATGCGATCTGCTCTAC
66 GATTGGTTTCTTCTATCTACTCCACTACTGCTTAGGGAGATAAGACATGATGCAATCTGCTCTAC
38355574 TACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA
131 TACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA
* *
38355639 TTGGTTTTTTTCTGTCTGCTCCACTACTAG-TGAGGGAGATAAGACTGGATGCGATCTGCTCT
196 TTGG-TTTCTTCTGTCTGCTCCACTA-TAGCTGAGAGAGATAAGACTGGATGCGATCTGCTCT
* * * *
38355701 ACTGCAAGTTCAGAGAAATAAGATCTGTGGTTTTAATCTGCTTCACTGTAACTTTAGGGAGATAG
1 ACTGCAACTTCAGAGAAATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAG
* * * *
38355766 GATTGGTTTCTTCTATCTGCTCTACTACTGCTTAGGGAGATAAGACTTGATGCAATCTGTTCTAC
66 GATTGGTTTCTTCTATCTACTCCACTACTGCTTAGGGAGATAAGACATGATGCAATCTGCTCTAC
* *
38355831 TGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGA
131 TACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA
* * * * *
38355896 TTGGTTTCTTCTTTCTGCTCCACTATTGCTTAGAGAGATAAGACTTGATGTGATCTGCTCT
196 TTGGTTTCTTCTGTCTGCTCCACTATAGCTGAGAGAGATAAGACTGGATGCGATCTGCTCT
* *
38355957 ACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCA
1 ACTGCAACTTCAGAGAAATAAGATCTGTGGTTTTAATCTGCTCCA
38356002 TTACTGCTTA
Statistics
Matches: 271, Mismatches: 29, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
255 2 0.01
256 88 0.32
257 181 0.67
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (256 bp):
ACTGCAACTTCAGAGAAATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAG
GATTGGTTTCTTCTATCTACTCCACTACTGCTTAGGGAGATAAGACATGATGCAATCTGCTCTAC
TACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA
TTGGTTTCTTCTGTCTGCTCCACTATAGCTGAGAGAGATAAGACTGGATGCGATCTGCTCT
Found at i:38356000 original size:84 final size:84
Alignment explanation
Indices: 38355912--38356597 Score: 355
Period size: 84 Copynumber: 8.1 Consensus size: 84
38355902 TCTTCTTTCT
*
38355912 GCTCCACTATTGCTTAGAGAGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATA
1 GCTCCACTACTGCTTAGAGAGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATA
38355977 AGATCTGTGGTTTTAATCC
66 AGATCTGTGGTTTTAATCC
* * * *
38355996 GCTCCATTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTTAGAGAGATA
1 GCTCCACTACTGCTTAGAGAGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATA
38356061 AGATCTGTGGTTTTAATCC
66 AGATCTGTGGTTTTAATCC
* ** * * ** * * * *
38356080 GCTCCACTGCAACTTCAGAGAGAT-AGA-TTGGTTTCTTCTG-TCTGCTCCACTACTGCTTAGGG
1 GCTCCACTACTGCTT-AGAGAGATAAGACTTGATGTGATCTGCTCTACTGCA--ACT--TCAGAG
* * *
38356142 AGATAAGA-CT-T-G-ATGAGATCT
61 AGATAAGATCTGTGGTTTTA-ATCC
* * ** * * * * * *
38356163 GCTCTACTGCAACTTCAGAGAGATAAGATCTGTGCTTTTAATCCGCACCACTGCAACTTCA-AGG
1 GCTCCACTACTGCTT-AGAGAGATAAGA-CT-TG-ATGTGATCTGCTCTACTGCAACTTCAGA-G
** * ** *
38356227 AGATGGGAT-TG-GTTTCTTCTGTCT
61 AGATAAGATCTGTGGTT-TT-AATCC
*
38356251 GCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATA
1 GCTCCACTACTGCTTAGAGAGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATA
38356316 AGATCTGTGGTTTTAATCC
66 AGATCTGTGGTTTTAATCC
* ** * * * * ** * * * *
38356335 GCTCCACTGCAACTTTAGGGAGATAGGA-TTGGTTTCTTCTG-TCTGCTCCATTACTGCTTAGGG
1 GCTCCACTACTGC-TTAGAGAGATAAGACTTGATGTGATCTGCTCTACTGCA--ACT--TCAGAG
* *** *
38356398 AGATAAGA-CT-T-GATGCGATCT
61 AGATAAGATCTGTGGTTTTAATCC
* * ** * * * * * * *
38356419 GCTCTACTGCAACTTCAGAGAGATAAGATCTTTGGTTTTAATCCGCTCCACTGCAACTTGAGGGA
1 GCTCCACTACTGCTT-AGAGAGATAAGA-C-TT-GATGTGATCTGCTCTACTGCAACTTCAGAGA
* ** *
38356484 GAT-AGAT-TG-GTTTATTCTGTCT
62 GATAAGATCTGTGGTT-TT-AATCC
* * **
38356506 ACTCCACTACTGCTTAGGGAGATAAGACTTGATGCAATCTGCTCTACTGCAACTTCAGAGAGATA
1 GCTCCACTACTGCTTAGAGAGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATA
*
38356571 AGATCTGTGCTTTTAATCC
66 AGATCTGTGGTTTTAATCC
*
38356590 GCACCACT
1 GCTCCACT
38356598 GCAACTTTAG
Statistics
Matches: 452, Mismatches: 109, Indels: 82
0.70 0.17 0.13
Matches are distributed among these distances:
82 9 0.02
83 71 0.16
84 194 0.43
85 58 0.13
86 35 0.08
87 46 0.10
88 28 0.06
89 11 0.02
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (84 bp):
GCTCCACTACTGCTTAGAGAGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATA
AGATCTGTGGTTTTAATCC
Found at i:38356089 original size:128 final size:128
Alignment explanation
Indices: 38355952--38356666 Score: 1098
Period size: 128 Copynumber: 5.6 Consensus size: 128
38355942 GATGTGATCT
* * ** * *
38355952 GCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTT-TT-AATCCGCTCCATTACTGCTTAGGG
1 GCTCCACTGCAACTTCAGAGAGATAAGAT-TG-GTTTCTTCTGTCTGCTCCACTACTGCTTAGGG
*
38356015 AGATAAGACTTGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTAATCC
64 AGATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
38356080 GCTCCACTGCAACTTCAGAGAGAT-AGATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGGGAG
1 GCTCCACTGCAACTTCAGAGAGATAAGATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGGGAG
* *
38356144 ATAAGACTTGATGAGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGCTTTTAATCC
66 ATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* **
38356207 GCACCACTGCAACTTCA-AGGAGATGGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGGGA
1 GCTCCACTGCAACTTCAGA-GAGATAAGATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGGGA
*
38356271 GATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
65 GATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* * * *
38356335 GCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCATTACTGCTTAGGGAG
1 GCTCCACTGCAACTTCAGAGAGATAAGATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGGGAG
*
38356400 ATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTTTGGTTTTAATCC
66 ATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* * * *
38356463 GCTCCACTGCAACTTGAGGGAGAT-AGATTGGTTTATTCTGTCTACTCCACTACTGCTTAGGGAG
1 GCTCCACTGCAACTTCAGAGAGATAAGATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGGGAG
* *
38356527 ATAAGACTTGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGCTTTTAATCC
66 ATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* * * ** *
38356590 GCACCACTGCAACTTTAGGGAGATGGGATTGGTTTCTTCTGTGTGCTCCACTACTGCTTAGGGAG
1 GCTCCACTGCAACTTCAGAGAGATAAGATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGGGAG
38356655 ATAAGACTTGAT
66 ATAAGACTTGAT
38356667 ATGATGGCTT
Statistics
Matches: 547, Mismatches: 34, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
125 3 0.01
126 5 0.01
127 225 0.41
128 314 0.57
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (128 bp):
GCTCCACTGCAACTTCAGAGAGATAAGATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGGGAG
ATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
Found at i:38356178 original size:339 final size:340
Alignment explanation
Indices: 38355671--38356340 Score: 1137
Period size: 339 Copynumber: 2.0 Consensus size: 340
38355661 ACTACTAGTG
*
38355671 AGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAAGTTCAGAGAAATAAGATCTGTGGTTTTA
1 AGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAAATAAGATCTGTGGTTTTA
* * * * * *
38355736 ATCTGCTTCACTGTAACTTTAGGGAGATAGGATTGGTTTCTTCTATCTGCTCTACTACTGCTTAG
66 ATCCGCTCCACTGCAACTTCAGAGAGATAGGATTGGTTTCTTCTATCTGCTCCACTACTGCTTAG
* *
38355801 GGAGATAAGACTTGATGCAATCTGTTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAAT
131 GGAGATAAGACTTGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGCTTTTAAT
* * * * *
38355866 CCGCTCCACTGTAACTTCAGGGAGATAGGATTGGTTTCTTCTTTCTGCTCCACTATTGCTTAGAG
196 CCGCACCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGAG
38355931 AGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
261 AGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
38355996 GCTCCATTACTGCTT
326 GCTCCATTACTGCTT
* * *
38356011 AGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTA
1 AGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAAATAAGATCTGTGGTTTTA
*
38356076 ATCCGCTCCACTGCAACTTCAGAGAGATA-GATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAG
66 ATCCGCTCCACTGCAACTTCAGAGAGATAGGATTGGTTTCTTCTATCTGCTCCACTACTGCTTAG
38356140 GGAGATAAGACTTGATG-AGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGCTTTTAA
131 GGAGATAAGACTTGATGCA-ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGCTTTTAA
* *
38356204 TCCGCACCACTGCAACTTCAAGGAGATGGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGG
195 TCCGCACCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGA
38356269 GAGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATC
260 GAGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATC
38356334 CGCTCCA
325 CGCTCCA
38356341 CTGCAACTTT
Statistics
Matches: 309, Mismatches: 20, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
338 1 0.00
339 223 0.72
340 85 0.28
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (340 bp):
AGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAAATAAGATCTGTGGTTTTA
ATCCGCTCCACTGCAACTTCAGAGAGATAGGATTGGTTTCTTCTATCTGCTCCACTACTGCTTAG
GGAGATAAGACTTGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGCTTTTAAT
CCGCACCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGAG
AGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
GCTCCATTACTGCTT
Found at i:38356204 original size:211 final size:212
Alignment explanation
Indices: 38355791--38356208 Score: 739
Period size: 211 Copynumber: 2.0 Consensus size: 212
38355781 TCTGCTCTAC
*
38355791 TACTGCTTAGGGAGATAAGACTTGATGCAATCTGTTCTACTGCAACTTCAGAGAGATAAGATCTG
1 TACTGCTTAGGGAGATAAGACTTGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG
* * *
38355856 TGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTGGTTTCTTCTTTCTGCTCCACTA
66 TGGTTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTA
* *
38355921 TTGCTTAGAGAGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTG
131 CTGCTTAGAGAGATAAGACTTGATGAGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTG
*
38355986 GTTTTAATCCGCTCCAT
196 CTTTTAATCCGCTCCAT
* *
38356003 TACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTG
1 TACTGCTTAGGGAGATAAGACTTGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG
38356068 TGGTTTTAATCCGCTCCACTGCAACTTCAGAGAGATA-GATTGGTTTCTTCTGTCTGCTCCACTA
66 TGGTTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTA
*
38356132 CTGCTTAGGGAGATAAGACTTGATGAGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTG
131 CTGCTTAGAGAGATAAGACTTGATGAGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTG
38356197 CTTTTAATCCGC
196 CTTTTAATCCGC
38356209 ACCACTGCAA
Statistics
Matches: 196, Mismatches: 10, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
211 99 0.51
212 97 0.49
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (212 bp):
TACTGCTTAGGGAGATAAGACTTGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTG
TGGTTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTA
CTGCTTAGAGAGATAAGACTTGATGAGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTG
CTTTTAATCCGCTCCAT
Found at i:38356264 original size:255 final size:254
Alignment explanation
Indices: 38355996--38356666 Score: 1135
Period size: 255 Copynumber: 2.6 Consensus size: 254
38355986 GTTTTAATCC
* *
38355996 GCTCCATTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTTAGAGAGATA
1 GCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
* *
38356061 AGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGATTGGTTTCTTCTGTCTGCT
66 AGATCTGTGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGATTGGTTTCTTCTGTCTGCT
38356126 CCACTACTGCTTAGGGAGATAAGACTTGATGAGATCTGCTCTACTGCAACTTCAGAGAGATAAGA
131 CCACTACTGCTTAGGGAGATAAGACTTGATGAGATCTGCTCTACTGCAACTTCAGAGAGATAAGA
* *
38356191 TCTGTGCTTTTAATCCGCACCACTGCAACTTCAAGGAGATGGGATTGGTTTCTTCTGTCT
196 TCTGTGCTTTTAATCCGCACCACTGCAACTTCAAGGAGAT-AGATTGGTTTATTCTGTCT
*
38356251 GCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATA
1 GCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
38356316 AGATCTGTGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGC
66 AGATCTGTGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATA-GATTGGTTTCTTCTGTCTGC
* *
38356381 TCCATTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAG
130 TCCACTACTGCTTAGGGAGATAAGACTTGATGAGATCTGCTCTACTGCAACTTCAGAGAGATAAG
* * * * *
38356446 ATCTTTGGTTTTAATCCGCTCCACTGCAACTTGAGGGAGATAGATTGGTTTATTCTGTCT
195 ATCTGTGCTTTTAATCCGCACCACTGCAACTTCAAGGAGATAGATTGGTTTATTCTGTCT
* *
38356506 ACTCCACTACTGCTTAGGGAGATAAGACTTGATGCAATCTGCTCTACTGCAACTTCAGAGAGATA
1 GCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
* * * *
38356571 AGATCTGTGCTTTTAATCCGCACCACTGCAACTTTAGGGAGATGGGATTGGTTTCTTCTGTGTGC
66 AGATCTGTGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGAT-AGATTGGTTTCTTCTGTCTGC
38356636 TCCACTACTGCTTAGGGAGATAAGACTTGAT
130 TCCACTACTGCTTAGGGAGATAAGACTTGAT
38356667 ATGATGGCTT
Statistics
Matches: 392, Mismatches: 22, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
255 273 0.70
256 119 0.30
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (254 bp):
GCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
AGATCTGTGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGATTGGTTTCTTCTGTCTGCT
CCACTACTGCTTAGGGAGATAAGACTTGATGAGATCTGCTCTACTGCAACTTCAGAGAGATAAGA
TCTGTGCTTTTAATCCGCACCACTGCAACTTCAAGGAGATAGATTGGTTTATTCTGTCT
Found at i:38356357 original size:467 final size:469
Alignment explanation
Indices: 38355528--38356470 Score: 1568
Period size: 467 Copynumber: 2.0 Consensus size: 469
38355518 CTTCTGTCTA
38355528 CTCCACTACTGCTTAGGGAGATAAGACATGATGCGATCTGCTCTACTACAACTTCAGAGAGATAA
1 CTCCACTACTGCTTAGGGAGATAAGACATGATGCGATCTGCTCTACTACAACTTCAGAGAGATAA
* *
38355593 GATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTTTTTCTGTCTGC
66 GATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTGGTTTTCTTCTGTCTGC
* *
38355658 TCCACTACTAGTGAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAAGTTCAGAGAAATAAG
131 TCCACTACTAGTGAGGGAGATAAGACTGGATGAGATCTGCTCTACTGCAACTTCAGAGAAATAAG
* * ** * * *
38355723 ATCTGTGGTTTTAATCTGCTTCACTGTAACTTTAGGGAGATAGGATTGGTTTCTTCTATCTGCTC
196 ATCTGTGCTTTTAATCCGCACCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTCTATCTGCTC
* *
38355788 TACTACTGCTTAGGGAGATAAGACTTGATGCAATCTGTTCTACTGCAACTTCAGAGAGATAAGAT
261 CACTACTGCTTAGGGAGATAAGACTTGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGAT
* *
38355853 CTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTGGTTTCTTCTTTCTGCTCCA
326 CTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCA
* *
38355918 CTATTGCTTAGAGAGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCT
391 CTACTGCTTAGAGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCT
38355983 GTGGTTTTAATCCG
456 GTGGTTTTAATCCG
* * * *
38355997 CTCCATTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAA
1 CTCCACTACTGCTTAGGGAGATAAGACATGATGCGATCTGCTCTACTACAACTTCAGAGAGATAA
38356062 GATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGAGAGATA-GATTGG-TTTCTTCTGTCTGC
66 GATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTGGTTTTCTTCTGTCTGC
* * *
38356125 TCCACTACT-GCTTAGGGAGATAAGACTTGATGAGATCTGCTCTACTGCAACTTCAGAGAGATAA
131 TCCACTACTAG-TGAGGGAGATAAGACTGGATGAGATCTGCTCTACTGCAACTTCAGAGAAATAA
* *
38356189 GATCTGTGCTTTTAATCCGCACCACTGCAACTTCAAGGAGATGGGATTGGTTTCTTCTGTCTGCT
195 GATCTGTGCTTTTAATCCGCACCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTCTATCTGCT
**
38356254 CCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGA
260 CCACTACTGCTTAGGGAGATAAGACTTGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGA
*
38356319 TCTGTGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCC
325 TCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCC
* *
38356384 ATTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATC
390 ACTACTGCTTAGAGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATC
*
38356449 TTTGGTTTTAATCCG
455 TGTGGTTTTAATCCG
38356464 CTCCACT
1 CTCCACT
38356471 GCAACTTGAG
Statistics
Matches: 440, Mismatches: 33, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
466 1 0.00
467 330 0.75
468 6 0.01
469 103 0.23
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.32
Consensus pattern (469 bp):
CTCCACTACTGCTTAGGGAGATAAGACATGATGCGATCTGCTCTACTACAACTTCAGAGAGATAA
GATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTGGTTTTCTTCTGTCTGC
TCCACTACTAGTGAGGGAGATAAGACTGGATGAGATCTGCTCTACTGCAACTTCAGAGAAATAAG
ATCTGTGCTTTTAATCCGCACCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTCTATCTGCTC
CACTACTGCTTAGGGAGATAAGACTTGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAGAT
CTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCA
CTACTGCTTAGAGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCT
GTGGTTTTAATCCG
Found at i:38356430 original size:339 final size:340
Alignment explanation
Indices: 38355656--38356443 Score: 1063
Period size: 339 Copynumber: 2.3 Consensus size: 340
38355646 TTTTCTGTCT
* * * * * * * *
38355656 GCTCCACTACTAGTGAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAAGTTCAGAGAAATA
1 GCTCCACTACAACTTAGGGAGATAAGACTTGATGCGATCTGCTCTACTCCAACTTTAGAGAGATA
* ** * * *
38355721 AGATCTGTGGTTTTAATCTGCT-TCACTGTAACTTTAGGGAGATAGGATTGGTTTCTTCTATCTG
66 AGATCTGTGGATGCAATCTGCTCT-ACTGCAACTTCAGAGAGATAGGATTGGTTTCTTCTATCTG
* *
38355785 CTCTACTACTGCTTAGGGAGATAAGACTTGATGCAATCTGTTCTACTGCAACTTCAGAGAGATAA
130 CTCCACTACTGCTTAGGGAGATAAGACTTGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAA
* * * * *
38355850 GATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTGGTTTCTTCTTTCTGCT
195 GATCTGTGCTTTTAATCCGCACCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTCTGTCTGCT
*
38355915 CCACTATTGCTTAGAGAGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGA
260 CCACTACTGCTTAGAGAGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGA
38355980 TCTGTGGTTTTAATCC
325 TCTGTGGTTTTAATCC
* ** *
38355996 GCTCCATTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCTACTGCAACTTTAGAGAGATA
1 GCTCCACTACAACTTAGGGAGATAAGACTTGATGCGATCTGCTCTACTCCAACTTTAGAGAGATA
* ** * * *
38356061 AGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGAGAGATA-GATTGGTTTCTTCTGTCTGC
66 AGATCTGTGGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAGGATTGGTTTCTTCTATCTGC
38356125 TCCACTACTGCTTAGGGAGATAAGACTTGATG-AGATCTGCTCTACTGCAACTTCAGAGAGATAA
131 TCCACTACTGCTTAGGGAGATAAGACTTGATGCA-ATCTGCTCTACTGCAACTTCAGAGAGATAA
*
38356189 GATCTGTGCTTTTAATCCGCACCACTGCAACTTCAAGGAGATGGGATTGGTTTCTTCTGTCTGCT
195 GATCTGTGCTTTTAATCCGCACCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTCTGTCTGCT
*
38356254 CCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGA
260 CCACTACTGCTTAGAGAGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGA
38356319 TCTGTGGTTTTAATCC
325 TCTGTGGTTTTAATCC
* * * * * * *
38356335 GCTCCACTGCAACTTTAGGGAGATAGGA-TTGGTTTC-TTCTG-TCTGCTCCATTACTGCTTAGG
1 GCTCCACTACAAC-TTAGGGAGATAAGACTT-GATGCGATCTGCTCTACTCCA--ACT--TTAGA
*
38356397 GAGATAAGA-CT-T-GATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
60 GAGATAAGATCTGTGGATGCAATCTGCTCTACTGCAACTTCAGAGAGATA
38356444 AGATCTTTGG
Statistics
Matches: 399, Mismatches: 41, Indels: 17
0.87 0.09 0.04
Matches are distributed among these distances:
338 8 0.02
339 261 0.65
340 115 0.29
341 2 0.01
342 13 0.03
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (340 bp):
GCTCCACTACAACTTAGGGAGATAAGACTTGATGCGATCTGCTCTACTCCAACTTTAGAGAGATA
AGATCTGTGGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAGGATTGGTTTCTTCTATCTGC
TCCACTACTGCTTAGGGAGATAAGACTTGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAG
ATCTGTGCTTTTAATCCGCACCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTCTGTCTGCTC
CACTACTGCTTAGAGAGATAAGACTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGAT
CTGTGGTTTTAATCC
Found at i:38357017 original size:24 final size:24
Alignment explanation
Indices: 38356985--38357036 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
38356975 GCCCTTACTG
38356985 TAATCTTCAAAGTTCAATCCACTA
1 TAATCTTCAAAGTTCAATCCACTA
* * *
38357009 TAATCTTCAACGTTCAGTCCACTG
1 TAATCTTCAAAGTTCAATCCACTA
38357033 TAAT
1 TAAT
38357037 TTTGGGACAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.08, T:0.35
Consensus pattern (24 bp):
TAATCTTCAAAGTTCAATCCACTA
Found at i:38357849 original size:16 final size:16
Alignment explanation
Indices: 38357828--38357870 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
38357818 TGGCCTCTCA
*
38357828 TTTTTC-TTTTCTTTTC
1 TTTTTCTTTTTC-CTTC
38357844 TTTTTCTTTTTCCTTC
1 TTTTTCTTTTTCCTTC
38357860 TTTTTCTTTTT
1 TTTTTCTTTTT
38357871 ATTTATTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 20 0.80
17 5 0.20
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTCTTTTTCCTTC
Found at i:38357879 original size:16 final size:15
Alignment explanation
Indices: 38357827--38357889 Score: 56
Period size: 16 Copynumber: 4.0 Consensus size: 15
38357817 TTGGCCTCTC
38357827 ATTTTTCTTTTCTTTT
1 ATTTTTCTTTT-TTTT
* *
38357843 CTTTTTCTTTTTCCTT
1 ATTTTTCTTTTT-TTT
*
38357859 CTTTTTCTTTTTATTT
1 ATTTTTCTTTTT-TTT
38357875 ATTTTT-TGTTTTTTT
1 ATTTTTCT-TTTTTTT
38357890 TGAACATTCT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
15 5 0.12
16 35 0.88
ACGTcount: A:0.05, C:0.13, G:0.02, T:0.81
Consensus pattern (15 bp):
ATTTTTCTTTTTTTT
Found at i:38363421 original size:39 final size:39
Alignment explanation
Indices: 38363378--38363454 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
38363368 AAGAAAATGA
*
38363378 ATAAAATTATAAAAATAT-AAAAGATATATATGTGTATAC
1 ATAAAATTATAAAAATATGAAAA-ATATATATATGTATAC
** *
38363417 ATAAAATTATGGAAATATGAAAAATATATGTATGTATA
1 ATAAAATTATAAAAATATGAAAAATATATATATGTATA
38363455 TATTTTAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 29 0.88
40 4 0.12
ACGTcount: A:0.55, C:0.01, G:0.10, T:0.34
Consensus pattern (39 bp):
ATAAAATTATAAAAATATGAAAAATATATATATGTATAC
Found at i:38375571 original size:40 final size:39
Alignment explanation
Indices: 38375517--38375595 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 39
38375507 AATAATTTTA
*
38375517 AAATCAAGTGAAAATGATTTCAAC-CAGGTCAAAATGATTT
1 AAATCAAGTGAAAATCATTTCAACACA--TCAAAATGATTT
* *
38375557 AAATCAAGTTAAAATCATTTTAACACATCAAAATGATTT
1 AAATCAAGTGAAAATCATTTCAACACATCAAAATGATTT
38375596 TCAAAAAAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
39 12 0.34
40 21 0.60
41 2 0.06
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (39 bp):
AAATCAAGTGAAAATCATTTCAACACATCAAAATGATTT
Found at i:38375595 original size:19 final size:20
Alignment explanation
Indices: 38375527--38375596 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
38375517 AAATCAAGTG
*
38375527 AAAATGATTTCAAC-CAGGTC
1 AAAATGATTTTAACACA-GTC
* *
38375547 AAAATGATTTAAATCA-AGTT
1 AAAATGATTTTAA-CACAGTC
*
38375567 AAAATCATTTTAACACA-TC
1 AAAATGATTTTAACACAGTC
38375586 AAAATGATTTT
1 AAAATGATTTT
38375597 CAAAAAAGTC
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
19 13 0.32
20 26 0.63
21 2 0.05
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.33
Consensus pattern (20 bp):
AAAATGATTTTAACACAGTC
Found at i:38375664 original size:20 final size:21
Alignment explanation
Indices: 38375626--38375664 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
38375616 CCAAGGCAAA
*
38375626 AAGTATCGATACCTTTTGGCC
1 AAGTATCGATACATTTTGGCC
38375647 AAGTATCGATA-ATTTTGG
1 AAGTATCGATACATTTTGG
38375665 AATTATTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (21 bp):
AAGTATCGATACATTTTGGCC
Found at i:38376143 original size:34 final size:36
Alignment explanation
Indices: 38376104--38376179 Score: 95
Period size: 38 Copynumber: 2.1 Consensus size: 36
38376094 CAATAAGAAA
38376104 AACACTTTTAAGC-AA-A-TATCATATTTTTCTTTC
1 AACACTTTTAAGCTAATACTATCATATTTTTCTTTC
* *
38376137 ATACACTTTTGAGCTTAATACTTTCATATTTTTCTTTC
1 A-ACACTTTTAAGC-TAATACTATCATATTTTTCTTTC
38376175 AACAC
1 AACAC
38376180 CTGTGAGCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
33 1 0.03
34 11 0.31
36 2 0.06
37 5 0.14
38 17 0.47
ACGTcount: A:0.30, C:0.20, G:0.04, T:0.46
Consensus pattern (36 bp):
AACACTTTTAAGCTAATACTATCATATTTTTCTTTC
Found at i:38379279 original size:11 final size:11
Alignment explanation
Indices: 38379263--38379291 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
38379253 CTTATGTCAA
38379263 ATGTTTAGTTG
1 ATGTTTAGTTG
38379274 ATGTTTAGTTG
1 ATGTTTAGTTG
38379285 ATGTTTA
1 ATGTTTA
38379292 TAGCATGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.55
Consensus pattern (11 bp):
ATGTTTAGTTG
Found at i:38379713 original size:19 final size:19
Alignment explanation
Indices: 38379689--38379726 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
38379679 AGTTTAGGCC
38379689 AGATTCTGGAGGTCACATT
1 AGATTCTGGAGGTCACATT
38379708 AGATTCTGGAGGTCACATT
1 AGATTCTGGAGGTCACATT
38379727 GATCACCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (19 bp):
AGATTCTGGAGGTCACATT
Found at i:38389041 original size:20 final size:20
Alignment explanation
Indices: 38389016--38389077 Score: 79
Period size: 20 Copynumber: 3.1 Consensus size: 20
38389006 TTTTGATGTG
*
38389016 TTAAAATGATTTTAACTTGA
1 TTAAAATCATTTTAACTTGA
* *
38389036 TTAAAATCATTTTGACTTGG
1 TTAAAATCATTTTAACTTGA
* *
38389056 TTATAATCATTTTCACTTGA
1 TTAAAATCATTTTAACTTGA
38389076 TT
1 TT
38389078 GGAAAATTGT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.10, G:0.10, T:0.48
Consensus pattern (20 bp):
TTAAAATCATTTTAACTTGA
Found at i:38389045 original size:39 final size:40
Alignment explanation
Indices: 38389002--38389077 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
38388992 TAGGAAAGGT
*
38389002 ATCATTTTGA--TGTGTTAAAATGATTTTAACTTGATTAAA
1 ATCATTTTGACTTG-GTTAAAATCATTTTAACTTGATTAAA
* *
38389041 ATCATTTTGACTTGGTTATAATCATTTTCACTTGATT
1 ATCATTTTGACTTGGTTAAAATCATTTTAACTTGATT
38389078 GGAAAATTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 10 0.31
40 20 0.62
41 2 0.06
ACGTcount: A:0.30, C:0.09, G:0.12, T:0.49
Consensus pattern (40 bp):
ATCATTTTGACTTGGTTAAAATCATTTTAACTTGATTAAA
Found at i:38393999 original size:37 final size:38
Alignment explanation
Indices: 38393914--38394002 Score: 119
Period size: 38 Copynumber: 2.4 Consensus size: 38
38393904 AAAGAAAATG
* ** *
38393914 AATAAAGATCAAAGAAAAGTTTGCTCAAATTCTGGAAA
1 AATAAAGAGCAAAGAAAAGAGTGCTCAAATTCTGCAAA
38393952 AA-ATAAGAGCAAAGAAAAGAGTGCTCAAATTCT-CAAA
1 AATA-AAGAGCAAAGAAAAGAGTGCTCAAATTCTGCAAA
38393989 AATAAAGAGCAAAG
1 AATAAAGAGCAAAG
38394003 TTTGCTCAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
37 16 0.36
38 29 0.64
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.18
Consensus pattern (38 bp):
AATAAAGAGCAAAGAAAAGAGTGCTCAAATTCTGCAAA
Found at i:38402554 original size:16 final size:16
Alignment explanation
Indices: 38402533--38402571 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
38402523 ATTAAAATTT
38402533 AATAGAATCTTGTCAA
1 AATAGAATCTTGTCAA
*
38402549 AATAGAGTCTTGTCAA
1 AATAGAATCTTGTCAA
38402565 AATAGAA
1 AATAGAA
38402572 GTTCTTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.46, C:0.10, G:0.15, T:0.28
Consensus pattern (16 bp):
AATAGAATCTTGTCAA
Found at i:38412304 original size:2 final size:2
Alignment explanation
Indices: 38412297--38412324 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
38412287 ATGAAATTTA
38412297 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
38412325 GGAAGGGATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:38413483 original size:3 final size:3
Alignment explanation
Indices: 38413464--38413531 Score: 73
Period size: 3 Copynumber: 22.7 Consensus size: 3
38413454 TTACAAAAAT
* * * *
38413464 ATA ATA ACA ATA GTA ATA ATC ATA ATA ATA ATA ATA ATA ATA ATA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
38413512 ACA ATA GTA ATA GTA ATA AT
1 ATA ATA ATA ATA ATA ATA AT
38413532 GAAGATTAGA
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:38415064 original size:8 final size:8
Alignment explanation
Indices: 38415048--38415115 Score: 55
Period size: 8 Copynumber: 8.2 Consensus size: 8
38415038 TTCAAATTTC
*
38415048 AATTGTAA
1 AATTTTAA
38415056 AATTTTAA
1 AATTTTAA
38415064 AATTTTAGA
1 AATTTTA-A
*
38415073 TATTTTAA
1 AATTTTAA
***
38415081 AAAGCTAA
1 AATTTTAA
*
38415089 TATTTTAA
1 AATTTTAA
38415097 AATTTTAGA
1 AATTTTA-A
*
38415106 TATTTTAA
1 AATTTTAA
38415114 AA
1 AA
38415116 AGCTAACATT
Statistics
Matches: 45, Mismatches: 13, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
8 31 0.69
9 14 0.31
ACGTcount: A:0.47, C:0.01, G:0.06, T:0.46
Consensus pattern (8 bp):
AATTTTAA
Found at i:38415079 original size:17 final size:17
Alignment explanation
Indices: 38415057--38415115 Score: 84
Period size: 17 Copynumber: 3.5 Consensus size: 17
38415047 CAATTGTAAA
38415057 ATTTTAAAATTTTAGAT
1 ATTTTAAAATTTTAGAT
***
38415074 ATTTTAAAAAGCTA-AT
1 ATTTTAAAATTTTAGAT
38415090 ATTTTAAAATTTTAGAT
1 ATTTTAAAATTTTAGAT
38415107 ATTTTAAAA
1 ATTTTAAAA
38415116 AGCTAACATT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
16 13 0.37
17 22 0.63
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.47
Consensus pattern (17 bp):
ATTTTAAAATTTTAGAT
Found at i:38415093 original size:16 final size:16
Alignment explanation
Indices: 38415072--38415132 Score: 77
Period size: 16 Copynumber: 3.8 Consensus size: 16
38415062 AAAATTTTAG
38415072 ATATTTTAAAAAGCTA
1 ATATTTTAAAAAGCTA
***
38415088 ATATTTTAAAATTTTA
1 ATATTTTAAAAAGCTA
38415104 GATATTTTAAAAAGCTA
1 -ATATTTTAAAAAGCTA
*
38415121 ACATTTTAAAAA
1 ATATTTTAAAAA
38415133 ATTTCAATTG
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
16 24 0.65
17 13 0.35
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (16 bp):
ATATTTTAAAAAGCTA
Found at i:38415096 original size:33 final size:33
Alignment explanation
Indices: 38415057--38415131 Score: 141
Period size: 33 Copynumber: 2.3 Consensus size: 33
38415047 CAATTGTAAA
*
38415057 ATTTTAAAATTTTAGATATTTTAAAAAGCTAAT
1 ATTTTAAAATTTTAGATATTTTAAAAAGCTAAC
38415090 ATTTTAAAATTTTAGATATTTTAAAAAGCTAAC
1 ATTTTAAAATTTTAGATATTTTAAAAAGCTAAC
38415123 ATTTTAAAA
1 ATTTTAAAA
38415132 AATTTCAATT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.44
Consensus pattern (33 bp):
ATTTTAAAATTTTAGATATTTTAAAAAGCTAAC
Found at i:38415297 original size:25 final size:25
Alignment explanation
Indices: 38415253--38415300 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
38415243 AAAAAATTAT
38415253 AAATATATTTAATAATATAAAATAA
1 AAATATATTTAATAATATAAAATAA
*
38415278 AAATATATTATAATTA-ATAAAAT
1 AAATATATT-TAATAATATAAAAT
38415301 TAATTTTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (25 bp):
AAATATATTTAATAATATAAAATAA
Found at i:38416569 original size:15 final size:15
Alignment explanation
Indices: 38416549--38416626 Score: 52
Period size: 15 Copynumber: 5.2 Consensus size: 15
38416539 TTTATGGAAA
38416549 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
38416564 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
38416578 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* ***
38416594 ATCAAATAT-TGAAA
1 ATCAAAGATATGGGT
38416608 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
38416624 ATC
1 ATC
38416627 GAGATATTGG
Statistics
Matches: 43, Mismatches: 16, Indels: 8
0.64 0.24 0.12
Matches are distributed among these distances:
14 7 0.16
15 29 0.67
16 7 0.16
ACGTcount: A:0.46, C:0.08, G:0.21, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:38416586 original size:30 final size:29
Alignment explanation
Indices: 38416545--38416626 Score: 128
Period size: 30 Copynumber: 2.8 Consensus size: 29
38416535 CATATTTATG
*
38416545 GAAAATCAAAGATATGGGTATCAAATAATA
1 GAAAGTCAAAGATATGGGTATCAAAT-ATA
*
38416575 GAAAGTCAAAGATATGGGTATCAAATATT
1 GAAAGTCAAAGATATGGGTATCAAATATA
38416604 GAAAAGTCAAAGATATGGGTATC
1 G-AAAGTCAAAGATATGGGTATC
38416627 GAGATATTGG
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
29 3 0.06
30 46 0.94
ACGTcount: A:0.48, C:0.07, G:0.21, T:0.24
Consensus pattern (29 bp):
GAAAGTCAAAGATATGGGTATCAAATATA
Found at i:38421213 original size:30 final size:30
Alignment explanation
Indices: 38421172--38421251 Score: 124
Period size: 30 Copynumber: 2.7 Consensus size: 30
38421162 CATATTTATG
*
38421172 GAAAATCAAAGATATGGGTATCAAATAATA
1 GAAAGTCAAAGATATGGGTATCAAATAATA
* * *
38421202 GAAAGTCAAAGATATAGGTATCAAATATTG
1 GAAAGTCAAAGATATGGGTATCAAATAATA
38421232 GAAAGTCAAAGATATGGGTA
1 GAAAGTCAAAGATATGGGTA
38421252 CCGAGATATT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.49, C:0.06, G:0.21, T:0.24
Consensus pattern (30 bp):
GAAAGTCAAAGATATGGGTATCAAATAATA
Found at i:38436220 original size:23 final size:22
Alignment explanation
Indices: 38436178--38436220 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
38436168 TTTAAATCCA
*
38436178 AAAAATAGAAAACTATATTCTT
1 AAAAATAGAAAACTAAATTCTT
*
38436200 AAAAATAGAGAAATTAAATTC
1 AAAAATAGA-AAACTAAATTC
38436221 CAAATTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.58, C:0.07, G:0.07, T:0.28
Consensus pattern (22 bp):
AAAAATAGAAAACTAAATTCTT
Found at i:38438405 original size:115 final size:114
Alignment explanation
Indices: 38438071--38438490 Score: 399
Period size: 115 Copynumber: 3.6 Consensus size: 114
38438061 AAAATAAGAA
* * * * * * *
38438071 TTAGCGGCGTTTTCTAAA-AAGCGCCGC-AAAAAACATAATCCTAACGACGTCGTTTAC-CGAAC
1 TTAGCGGCGTTTT-TAAAGAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAG-GC
* *
38438133 ATTAGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGTTCATGGCT
64 TTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGTTCATGGCT
38438184 TTAGCGGCGTTTTTGAGAAAGCGCAAAGCGCCGC-AAAAAA-CTAAGCCCAACGACGCCGTTTTC
1 TTAGCGGCGTTTTT---AAA--G--AAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTC
* ** * *
38438247 TAGGCTTTCGAGGG-TTTAGCGACGTTTTTATCAATGCGCCGCTAATGTTCAGGGCT
59 TAGGCTTTCG-GGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGTTCATGGCT
* * *
38438303 TTAACGGCATTTTTAAAGAAGCGCCGCCAAAAAAACCTAAGCCCAACGACACCGTTTT-T-GAGC
1 TTAGCGGCGTTTTTAAAGAAGCGCCG-CAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAG-GC
* * * ** *
38438366 TTTTTGGGGATTTAGCGGCGTTTTTAAGGAAGCGTCGCTAATACTCATGGCC
64 -TTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGTTCATGGCT
** * * *
38438418 TTAGCGGCGTTTTTGGAGAAGCGCCGCAAAAAAGCCTAAGCCCAACGACGCCG-TTTCGAGAGAT
1 TTAGCGGCGTTTTTAAAGAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAG-GCT
38438482 TTCGGGGAT
65 TTCGGGGAT
38438491 CTAGTGACAT
Statistics
Matches: 252, Mismatches: 37, Indels: 35
0.78 0.11 0.11
Matches are distributed among these distances:
112 9 0.04
113 18 0.07
114 47 0.19
115 85 0.34
116 3 0.01
119 71 0.28
120 19 0.08
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (114 bp):
TTAGCGGCGTTTTTAAAGAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAGGCTT
TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGTTCATGGCT
Found at i:38438578 original size:73 final size:73
Alignment explanation
Indices: 38438418--38438591 Score: 183
Period size: 73 Copynumber: 2.4 Consensus size: 73
38438408 ACTCATGGCC
*
38438418 TTAGCGGCGTTTTTGGAGAAGCGCCGCAAAAAAGCCTAAGCCCAACGACGCCGTTTCGAGAGATT
1 TTAGCGGCGTTTTTGGAGAAGCGCCGCAAAAAAGACTAAGCCCAACGACGCCGTTTCGAGAGATT
38438483 TCGGGGAT
66 TCGGGGAT
* * * * * * * * * *
38438491 CTAGTGACATTTTTTGTGTAGCGCCGCAATAAAA-ACTAAGCCCAACGACGCCGTTTTC-TGTGC
1 TTAGCGGCGTTTTTGGAGAAGCGCCGCAA-AAAAGACTAAGCCCAACGACGCCG-TTTCGAGAGA
38438554 TTTCGGTGGAT
64 TTTCGG-GGAT
*
38438565 TTAGCGGCGTTTTTATGA-AAGCGCCGC
1 TTAGCGGCGTTTTT-GGAGAAGCGCCGC
38438592 TAATGCTCAG
Statistics
Matches: 80, Mismatches: 17, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
73 48 0.60
74 30 0.38
75 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (73 bp):
TTAGCGGCGTTTTTGGAGAAGCGCCGCAAAAAAGACTAAGCCCAACGACGCCGTTTCGAGAGATT
TCGGGGAT
Found at i:38438907 original size:17 final size:17
Alignment explanation
Indices: 38438863--38438909 Score: 67
Period size: 19 Copynumber: 2.6 Consensus size: 17
38438853 AGTGTTATGC
*
38438863 TTTAGGGGTTAGGGGGA
1 TTTAGGGGTTAGGAGGA
38438880 TTTAGAGGGGTTAGGAGGA
1 TTT--AGGGGTTAGGAGGA
38438899 TTTAGGGGTTA
1 TTTAGGGGTTA
38438910 AGGGTTAAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 11 0.41
19 16 0.59
ACGTcount: A:0.21, C:0.00, G:0.47, T:0.32
Consensus pattern (17 bp):
TTTAGGGGTTAGGAGGA
Found at i:38441864 original size:16 final size:16
Alignment explanation
Indices: 38441843--38441893 Score: 66
Period size: 16 Copynumber: 3.0 Consensus size: 16
38441833 AAGGGAAGAA
38441843 GCTGGAATATATACTT
1 GCTGGAATATATACTT
*
38441859 GCTGGAATATATTCCAGTT
1 GCTGGAATATA-T--ACTT
38441878 GCTGGAATATATACTT
1 GCTGGAATATATACTT
38441894 TACTAAAATC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
16 14 0.47
17 1 0.03
18 1 0.03
19 14 0.47
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (16 bp):
GCTGGAATATATACTT
Found at i:38443434 original size:47 final size:47
Alignment explanation
Indices: 38443289--38443462 Score: 227
Period size: 47 Copynumber: 3.8 Consensus size: 47
38443279 AAAAAATGCA
*
38443289 ATATTCTTAAGCATATATTACATTACTTACATTACTTACCGAAATAT
1 ATATTCTTAAGTATATATTACATTACTTACATTACTTACCGAAATAT
* * * * *
38443336 AT-TACATAACTCA-GT-TTACTTTACTTACATTACTT----AAATAT
1 ATATTCTTAAGT-ATATATTACATTACTTACATTACTTACCGAAATAT
38443377 ATATTCTTAAGTATATATTACATTACTTACATTACTTACCGAAATAT
1 ATATTCTTAAGTATATATTACATTACTTACATTACTTACCGAAATAT
*
38443424 ATATTTTTAAGTATATATTACATTACTTACATTACTTAC
1 ATATTCTTAAGTATATATTACATTACTTACATTACTTAC
38443463 TAAAATATGT
Statistics
Matches: 107, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
41 9 0.08
42 7 0.07
43 19 0.18
45 19 0.18
46 6 0.06
47 47 0.44
ACGTcount: A:0.37, C:0.16, G:0.03, T:0.44
Consensus pattern (47 bp):
ATATTCTTAAGTATATATTACATTACTTACATTACTTACCGAAATAT
Found at i:38443559 original size:49 final size:49
Alignment explanation
Indices: 38443499--38443615 Score: 143
Period size: 49 Copynumber: 2.4 Consensus size: 49
38443489 TAATATTATA
* *
38443499 CATAACATACATAA-TACACATAACTTA-ATAATTTTAAAATATATCGTTC
1 CATAACTTACATAACT-CA-ATAACTTACATAATTTTAAAATATATCATTC
* * *
38443548 CATAATTTACATAACTTAATAATTTACATAATTTTAAAATATATCATTC
1 CATAACTTACATAACTCAATAACTTACATAATTTTAAAATATATCATTC
38443597 CATAACTTACA-AA-TCAATA
1 CATAACTTACATAACTCAATA
38443616 TTATACATAA
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
47 5 0.08
48 9 0.15
49 44 0.75
50 1 0.02
ACGTcount: A:0.47, C:0.15, G:0.01, T:0.37
Consensus pattern (49 bp):
CATAACTTACATAACTCAATAACTTACATAATTTTAAAATATATCATTC
Found at i:38443571 original size:17 final size:17
Alignment explanation
Indices: 38443549--38443654 Score: 73
Period size: 17 Copynumber: 6.4 Consensus size: 17
38443539 ATATCGTTCC
38443549 ATAATTTACATAACTTA
1 ATAATTTACATAACTTA
*
38443566 ATAATTTACATAATTTTA
1 ATAATTTACATAA-CTTA
* **
38443584 A-AATATATCAT---TCC
1 ATAATTTA-CATAACTTA
* *
38443598 ATAACTTACA-AA-TCA
1 ATAATTTACATAACTTA
38443613 AT-ATTATACATAACTTA
1 ATAATT-TACATAACTTA
38443630 CATAATTTACATAACTTA
1 -ATAATTTACATAACTTA
38443648 ATAATTT
1 ATAATTT
38443655 TAAAATATAT
Statistics
Matches: 70, Mismatches: 9, Indels: 20
0.71 0.09 0.20
Matches are distributed among these distances:
14 6 0.09
15 12 0.17
16 2 0.03
17 27 0.39
18 20 0.29
19 3 0.04
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (17 bp):
ATAATTTACATAACTTA
Found at i:38443578 original size:9 final size:9
Alignment explanation
Indices: 38443548--38443654 Score: 55
Period size: 9 Copynumber: 11.9 Consensus size: 9
38443538 TATATCGTTC
38443548 CATAATTTA
1 CATAATTTA
*
38443557 CATAACTTA
1 CATAATTTA
38443566 -ATAATTTA
1 CATAATTTA
38443574 CATAATTTTAA
1 CATAA-TTT-A
* *
38443585 AATATATCATTC
1 CATA-AT--TTA
*
38443597 CATAACTTA
1 CATAATTTA
*
38443606 CA-AA-TCA
1 CATAATTTA
38443613 -AT-ATTATA
1 CATAATT-TA
*
38443621 CATAACTTA
1 CATAATTTA
38443630 CATAATTTA
1 CATAATTTA
*
38443639 CATAACTTA
1 CATAATTTA
38443648 -ATAATTT
1 CATAATTT
38443655 TAAAATATAT
Statistics
Matches: 74, Mismatches: 13, Indels: 23
0.67 0.12 0.21
Matches are distributed among these distances:
6 2 0.03
7 3 0.04
8 16 0.22
9 36 0.49
10 5 0.07
11 6 0.08
12 4 0.05
13 2 0.03
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.40
Consensus pattern (9 bp):
CATAATTTA
Found at i:38445303 original size:21 final size:21
Alignment explanation
Indices: 38445265--38445332 Score: 91
Period size: 21 Copynumber: 3.2 Consensus size: 21
38445255 CAACTTAAAA
* * *
38445265 CAGAGGCGGAAGCAAGGGAAG
1 CAGAGGCAGCAGCGAGGGAAG
* *
38445286 TAGAGGCAGCAGCGAGGGCAG
1 CAGAGGCAGCAGCGAGGGAAG
38445307 CAGAGGCAGCAGCGAGGGAAG
1 CAGAGGCAGCAGCGAGGGAAG
38445328 CAGAG
1 CAGAG
38445333 CAGAGCAGAA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.34, C:0.18, G:0.47, T:0.01
Consensus pattern (21 bp):
CAGAGGCAGCAGCGAGGGAAG
Found at i:38445307 original size:12 final size:12
Alignment explanation
Indices: 38445290--38445330 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
38445280 GGGAAGTAGA
38445290 GGCAGCAGCGAG
1 GGCAGCAGCGAG
38445302 GGCAGCA--GA-
1 GGCAGCAGCGAG
38445311 GGCAGCAGCGAG
1 GGCAGCAGCGAG
*
38445323 GGAAGCAG
1 GGCAGCAG
38445331 AGCAGAGCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
9 7 0.28
10 2 0.08
11 2 0.08
12 14 0.56
ACGTcount: A:0.29, C:0.22, G:0.49, T:0.00
Consensus pattern (12 bp):
GGCAGCAGCGAG
Found at i:38445744 original size:43 final size:43
Alignment explanation
Indices: 38445679--38445817 Score: 163
Period size: 43 Copynumber: 3.2 Consensus size: 43
38445669 CATCAAACAA
** * **
38445679 TAGCGGCGTTTGT-GATCTAAGCGCCGTTAAAGAACATGACCTT
1 TAGCGGCGTTTGTGGA-AAAAGCGCCGCTAAAGAACATGTTCTT
* *
38445722 TAACGGCGTTTTTGGAAAAAGCGCCGCTAAAGAACATGTTCTT
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGAACATGTTCTT
* ***
38445765 TTGCGGCGTTTGTGGGTGAAGCGCCGCTAAAGAACATGTTCTT
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGAACATGTTCTT
38445808 TAGCGGCGTT
1 TAGCGGCGTT
38445818 GACAACAATG
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
43 79 0.98
44 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGAACATGTTCTT
Found at i:38448200 original size:42 final size:43
Alignment explanation
Indices: 38448146--38448260 Score: 115
Period size: 42 Copynumber: 2.7 Consensus size: 43
38448136 CTAGCACAAA
* * *
38448146 CGCCGCTGAAGACTAAGACCTTTAGCGGCGCTTTAGTG-GAAG
1 CGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTAGGGAGAAG
** * * *
38448188 CGCCGCTAAAGACCCTGATCTTTAGCGGCGTTTTTGGGAGAAG
1 CGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTAGGGAGAAG
* * **
38448231 CGCCGCTAAAGATCAGGGTCTTTAGCGGCG
1 CGCCGCTAAAGACCAAGACCTTTAGCGGCG
38448261 TTTTTCTCTC
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
42 30 0.50
43 30 0.50
ACGTcount: A:0.22, C:0.24, G:0.31, T:0.23
Consensus pattern (43 bp):
CGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTAGGGAGAAG
Found at i:38448242 original size:43 final size:42
Alignment explanation
Indices: 38448146--38448265 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 42
38448136 CTAGCACAAA
* * * * * * *
38448146 CGCCGCTGAAGACTAAGACCTTTAGCGGCGCTTTAGTGGAAG
1 CGCCGCTAAAGACCAGGATCTTTAGCGGCGTTTTTGGGGAAG
**
38448188 CGCCGCTAAAGACCCTGATCTTTAGCGGCGTTTTTGGGAGAAG
1 CGCCGCTAAAGACCAGGATCTTTAGCGGCGTTTTTGGG-GAAG
* *
38448231 CGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTT
1 CGCCGCTAAAGACCAGGATCTTTAGCGGCGTTTTT
38448266 CTCTCAAACG
Statistics
Matches: 65, Mismatches: 12, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
42 30 0.46
43 35 0.54
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (42 bp):
CGCCGCTAAAGACCAGGATCTTTAGCGGCGTTTTTGGGGAAG
Found at i:38448339 original size:86 final size:86
Alignment explanation
Indices: 38448249--38448456 Score: 215
Period size: 86 Copynumber: 2.4 Consensus size: 86
38448239 AAGATCAGGG
* * * * *
38448249 TCTTTAGCGGCGTTTTTCTCTCAAACGCCGC-AATAGACCTTGATCTATAGCGGCGCTTTGACCA
1 TCTTTAGCGGCGCTTTCCCCACAAACGCCGCTAA-AGACCATGATCTATAGCGGCGCTTTGACCA
*
38448313 CAAATGCCACTAAAGAA-CCTAA
65 CAAACGCCACTAAA-AACCCTAA
* * **
38448335 TCTTTAGTC-GCGCTTTCCCCACAAACGCCGCTAAAGACCATGATCTTTAGTGGCGCTTTTTCCA
1 TCTTTAG-CGGCGCTTTCCCCACAAACGCCGCTAAAGACCATGATCTATAGCGGCGCTTTGACCA
* *
38448399 CAAACGCCGCTAAAAACCCTTA
65 CAAACGCCACTAAAAACCCTAA
* ** * *
38448421 TCTTTAGCGGTGCTTTAACCAAAAACGCCACTAAAG
1 TCTTTAGCGGCGCTTTCCCCACAAACGCCGCTAAAG
38448457 GCCAACACCT
Statistics
Matches: 101, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
85 3 0.03
86 95 0.94
87 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.26
Consensus pattern (86 bp):
TCTTTAGCGGCGCTTTCCCCACAAACGCCGCTAAAGACCATGATCTATAGCGGCGCTTTGACCAC
AAACGCCACTAAAAACCCTAA
Found at i:38448369 original size:43 final size:43
Alignment explanation
Indices: 38448301--38448456 Score: 147
Period size: 43 Copynumber: 3.6 Consensus size: 43
38448291 ATCTATAGCG
* * *
38448301 GCGCTTTGACCACAAATGCCACTAAAGAACCTAATCTTTAGTC
1 GCGCTTTCACCACAAACGCCGCTAAAGAACCTAATCTTTAGTC
* * *
38448344 GCGCTTTCCCCACAAACGCCGCTAAAG-ACCATGATCTTTAGTG
1 GCGCTTTCACCACAAACGCCGCTAAAGAACC-TAATCTTTAGTC
** *
38448387 GCGCTTTTTCCACAAACGCCGCTAAA-AACCCTTATCTTTAG-C
1 GCGCTTTCACCACAAACGCCGCTAAAGAA-CCTAATCTTTAGTC
* * * *
38448429 GGTGCTTTAACCAAAAACGCCACTAAAG
1 -GCGCTTTCACCACAAACGCCGCTAAAG
38448457 GCCAACACCT
Statistics
Matches: 93, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
42 3 0.03
43 88 0.95
44 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.24
Consensus pattern (43 bp):
GCGCTTTCACCACAAACGCCGCTAAAGAACCTAATCTTTAGTC
Found at i:38448469 original size:86 final size:86
Alignment explanation
Indices: 38448300--38448481 Score: 197
Period size: 86 Copynumber: 2.1 Consensus size: 86
38448290 GATCTATAGC
** * ** * *
38448300 GGCGCTTTGACCACAAATGCCACTAAAGAACCTAATCTTTAGTCGCGCTTTCCCCACAAACGCCG
1 GGCGCTTTTTCCACAAACGCCACTAAAGAACCTAATCTTTAGTCGCGCTTTAACCAAAAACGCCA
** *
38448365 CTAAAGACCATGATCTTTAGT
66 CTAAAGACCAACACCTTTAGT
* * *
38448386 GGCGCTTTTTCCACAAACGCCGCTAAA-AACCCTTATCTTTAG-CGGTGCTTTAACCAAAAACGC
1 GGCGCTTTTTCCACAAACGCCACTAAAGAA-CCTAATCTTTAGTC-GCGCTTTAACCAAAAACGC
*
38448449 CACTAAAGGCCAACACCTTTAGT
64 CACTAAAGACCAACACCTTTAGT
*
38448472 GGCGTTTTTT
1 GGCGCTTTTT
38448482 TAAAAAAAAC
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
85 3 0.04
86 76 0.96
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.26
Consensus pattern (86 bp):
GGCGCTTTTTCCACAAACGCCACTAAAGAACCTAATCTTTAGTCGCGCTTTAACCAAAAACGCCA
CTAAAGACCAACACCTTTAGT
Found at i:38448469 original size:129 final size:129
Alignment explanation
Indices: 38448231--38448471 Score: 292
Period size: 129 Copynumber: 1.9 Consensus size: 129
38448221 TTGGGAGAAG
* * * *
38448231 CGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTTCTCTCAAACGCCGCAATAGACCTTGATCTA
1 CGCCGCTAAAGACCAGGATCTTTAGCGGCGTTTTTCTCACAAACGCCGCAATAAACCTTGATCTA
* * * * *
38448296 TAGCGGCGCTTTGACCACAAATGCCACTAAAGAACCTAATCTTTAGTCGCGCTTTCCCCACAAA
66 TAGCGGCGCTTTAACCAAAAACGCCACTAAAGAACCAAACCTTTAGTCGCGCTTTCCCCACAAA
* *
38448360 CGCCGCTAAAGACCATGATCTTTAGTGGCGCTTTTTC-CACAAACGCCGCTAA-AAACCCTT-AT
1 CGCCGCTAAAGACCAGGATCTTTAGCGGCG-TTTTTCTCACAAACGCCGC-AATAAA-CCTTGAT
* * *
38448422 CTTTAGCGGTGCTTTAACCAAAAACGCCACTAAAG-GCCAACACCTTTAGT
63 CTATAGCGGCGCTTTAACCAAAAACGCCACTAAAGAACCAA-ACCTTTAGT
38448472 GGCGTTTTTT
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
128 3 0.03
129 79 0.84
130 12 0.13
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (129 bp):
CGCCGCTAAAGACCAGGATCTTTAGCGGCGTTTTTCTCACAAACGCCGCAATAAACCTTGATCTA
TAGCGGCGCTTTAACCAAAAACGCCACTAAAGAACCAAACCTTTAGTCGCGCTTTCCCCACAAA
Found at i:38448833 original size:21 final size:21
Alignment explanation
Indices: 38448807--38448848 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
38448797 TTTGACGCTG
38448807 CTCTGCTTCCCTCACTGCAGC
1 CTCTGCTTCCCTCACTGCAGC
*
38448828 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCACTGCAGC
38448849 TTGTACTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.07, C:0.48, G:0.17, T:0.29
Consensus pattern (21 bp):
CTCTGCTTCCCTCACTGCAGC
Found at i:38448857 original size:21 final size:21
Alignment explanation
Indices: 38448807--38448865 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
38448797 TTTGACGCTG
* *
38448807 CTCTGCTTCCCTCACTGCAGC
1 CTCTACTTCCCTCGCTGCAGC
*
38448828 CTCTGCTTCCCTCGCTGCAGC
1 CTCTACTTCCCTCGCTGCAGC
* * *
38448849 TTGTACTTCTCTCGCTG
1 CTCTACTTCCCTCGCTG
38448866 TTGCCTTAGC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.07, C:0.42, G:0.17, T:0.34
Consensus pattern (21 bp):
CTCTACTTCCCTCGCTGCAGC
Found at i:38451365 original size:33 final size:33
Alignment explanation
Indices: 38451328--38451390 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
38451318 GAAAAATAAT
**
38451328 AATTAAACTATACAACTAAAATATAACCAAAAA
1 AATTAAACTATACAAAAAAAATATAACCAAAAA
*
38451361 AATTAAACTATTCAAAAAAAATATAACCAA
1 AATTAAACTATACAAAAAAAATATAACCAA
38451391 CTTAAAGATC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.63, C:0.14, G:0.00, T:0.22
Consensus pattern (33 bp):
AATTAAACTATACAAAAAAAATATAACCAAAAA
Found at i:38451857 original size:38 final size:38
Alignment explanation
Indices: 38451806--38451933 Score: 238
Period size: 38 Copynumber: 3.4 Consensus size: 38
38451796 NNNNTGTAAT
38451806 GATAAATGACAGGAAGTTGAAATTATTCAAACAAACCG
1 GATAAATGACAGGAAGTTGAAATTATTCAAACAAACCG
*
38451844 GATAAATGACAGGAAGTTGAATTTATTCAAACAAACCG
1 GATAAATGACAGGAAGTTGAAATTATTCAAACAAACCG
*
38451882 GATAAATGACTGGAAGTTGAAATTATTCAAACAAACCG
1 GATAAATGACAGGAAGTTGAAATTATTCAAACAAACCG
38451920 GATAAATGACAGGA
1 GATAAATGACAGGA
38451934 TTATCTAAGT
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 86 1.00
ACGTcount: A:0.46, C:0.12, G:0.20, T:0.22
Consensus pattern (38 bp):
GATAAATGACAGGAAGTTGAAATTATTCAAACAAACCG
Found at i:38453136 original size:22 final size:22
Alignment explanation
Indices: 38453095--38453148 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
38453085 TTGTATTTTC
* *
38453095 ATTAAAATTTTTAGTAAATAATT
1 ATTAAAGTTTTAAGTAAAT-ATT
38453118 ATTAAAGTTTTAAGT-AATATT
1 ATTAAAGTTTTAAGTAAATATT
*
38453139 -TAAAAGTTTT
1 ATTAAAGTTTT
38453149 TGATAAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 9 0.32
21 3 0.11
22 3 0.11
23 13 0.46
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (22 bp):
ATTAAAGTTTTAAGTAAATATT
Found at i:38453163 original size:21 final size:21
Alignment explanation
Indices: 38453097--38453163 Score: 50
Period size: 20 Copynumber: 3.2 Consensus size: 21
38453087 GTATTTTCAT
*
38453097 TAAAA-TTTTTAGTAAATAATTA
1 TAAAAGTTTTAAGT-AA-AATTA
* *
38453119 TTAAAGTTTTAAGTAATATT-
1 TAAAAGTTTTAAGTAAAATTA
*
38453139 TAAAAGTTTT-TGATAAAATTA
1 TAAAAGTTTTAAG-TAAAATTA
38453160 TAAA
1 TAAA
38453164 TTTTAGTTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
19 1 0.03
20 15 0.42
21 7 0.19
22 6 0.17
23 7 0.19
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (21 bp):
TAAAAGTTTTAAGTAAAATTA
Found at i:38453207 original size:18 final size:19
Alignment explanation
Indices: 38453171--38453212 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
38453161 AAATTTTAGT
*
38453171 TTTTTTATTTACTTTTTATA
1 TTTTTTATTTA-TTCTTATA
38453191 TTTTTTATTT-TTCTTATA
1 TTTTTTATTTATTCTTATA
38453209 TTTT
1 TTTT
38453213 GGTCCTGTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.52
20 10 0.48
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTTTATTTATTCTTATA
Found at i:38453395 original size:14 final size:14
Alignment explanation
Indices: 38453378--38453432 Score: 74
Period size: 14 Copynumber: 3.9 Consensus size: 14
38453368 ACTAACTCTT
* *
38453378 AACCCTTAACCCTA
1 AACCCTAAACCCCA
38453392 AACCCTAAACCCCA
1 AACCCTAAACCCCA
*
38453406 AACCCCAAACCCCA
1 AACCCTAAACCCCA
*
38453420 AACCCCAAACCCC
1 AACCCTAAACCCC
38453433 TACCCCTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 38 1.00
ACGTcount: A:0.40, C:0.53, G:0.00, T:0.07
Consensus pattern (14 bp):
AACCCTAAACCCCA
Found at i:38453408 original size:7 final size:7
Alignment explanation
Indices: 38453385--38453432 Score: 78
Period size: 7 Copynumber: 6.9 Consensus size: 7
38453375 CTTAACCCTT
*
38453385 AACCCTA
1 AACCCCA
*
38453392 AACCCTA
1 AACCCCA
38453399 AACCCCA
1 AACCCCA
38453406 AACCCCA
1 AACCCCA
38453413 AACCCCA
1 AACCCCA
38453420 AACCCCA
1 AACCCCA
38453427 AACCCC
1 AACCCC
38453433 TACCCCTATT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.42, C:0.54, G:0.00, T:0.04
Consensus pattern (7 bp):
AACCCCA
Found at i:38453570 original size:89 final size:89
Alignment explanation
Indices: 38453446--38453681 Score: 429
Period size: 89 Copynumber: 2.7 Consensus size: 89
38453436 CCCTATTCCT
*
38453446 ACCCCTAAACCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCTAAA
1 ACCCCTAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCTAAA
*
38453511 CCCTAACTCGACCCCGAATCACTA
66 CCCTAACTCGACCCCAAATCACTA
*
38453535 ACCCCTAACCCCTAAACATTATTTAATATATAAATTAAAAAAAACTAATTAATCTAAATCCTAAA
1 ACCCCTAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCTAAA
38453600 CCCTAACTCGACCCCAAATCACTA
66 CCCTAACTCGACCCCAAATCACTA
*
38453624 ACCCTTAACCCCTAAACATTATTTAATATATAAATT-AAAAACACTAATTAATCTAAAT
1 ACCCCTAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAAT
38453682 TAATCCTAAA
Statistics
Matches: 142, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
88 21 0.15
89 121 0.85
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.28
Consensus pattern (89 bp):
ACCCCTAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCTAAA
CCCTAACTCGACCCCAAATCACTA
Found at i:38453711 original size:14 final size:14
Alignment explanation
Indices: 38453686--38453720 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
38453676 CTAAATTAAT
38453686 CCTAAACCCTAA-C
1 CCTAAACCCTAACC
38453699 CCTAAATCCCTAACC
1 CCTAAA-CCCTAACC
38453714 CCTAAAC
1 CCTAAAC
38453721 ATTATTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 6 0.30
14 7 0.35
15 7 0.35
ACGTcount: A:0.37, C:0.46, G:0.00, T:0.17
Consensus pattern (14 bp):
CCTAAACCCTAACC
Found at i:38453770 original size:80 final size:78
Alignment explanation
Indices: 38453448--38453779 Score: 235
Period size: 89 Copynumber: 3.9 Consensus size: 78
38453438 CTATTCCTAC
* *
38453448 CCCTAAACCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCT-A-AATCCTAAA
1 CCCTAACCCCTAAACATTATTTAATATATAAATT-AAAAACACTAATTAATCTAATAACCCTAAA
*
38453511 CCCTAACTCGACCCCGAATCACTAAC
65 CCCT-A----A-CCC---T-A--AAT
* *
38453537 CCCTAACCCCTAAACATTATTTAATATATAAATTAAAAAAAACTAATTAATCT-A-AATCCTAAA
1 CCCTAACCCCTAAACATTATTTAATATATAAATT-AAAAACACTAATTAATCTAATAACCCTAAA
*
38453600 CCCTAACTCGACCCCAAATCACT
65 CCCT-A----A-CCCTAA--A-T
*
38453623 AACCCTTAACCCCTAAACATTATTTAATATATAAATTAAAAACACTAATTAATCTAAATTAATCC
1 --CCC-TAACCCCTAAACATTATTTAATATATAAATTAAAAACACTAATTAATCT-AA-TAACCC
38453688 TAAACCCTAACCCTAAAT
61 TAAACCCTAACCCTAAAT
* * *
38453706 CCCTAACCCCTAAACATTATTTAATATTATATAATTTAAAATATATTAATTAGTCT-A-AACCCT
1 CCCTAACCCCTAAACATTATTTAATA-TATA-AA-TTAAAA-ACACTAATTAATCTAATAACCCT
*
38453769 AAACTCTAACC
62 AAACCCTAACC
38453780 TAACACCGAA
Statistics
Matches: 218, Mismatches: 11, Indels: 37
0.82 0.04 0.14
Matches are distributed among these distances:
80 38 0.17
81 7 0.03
82 3 0.01
83 8 0.04
84 12 0.06
85 2 0.01
86 5 0.02
87 1 0.00
88 20 0.09
89 107 0.49
90 1 0.00
91 1 0.00
92 13 0.06
ACGTcount: A:0.45, C:0.25, G:0.01, T:0.29
Consensus pattern (78 bp):
CCCTAACCCCTAAACATTATTTAATATATAAATTAAAAACACTAATTAATCTAATAACCCTAAAC
CCTAACCCTAAAT
Found at i:38453832 original size:20 final size:20
Alignment explanation
Indices: 38453807--38453845 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
38453797 ACCCTAAACT
* *
38453807 TCTAACCTTTAACCTCTAAC
1 TCTAACCCTTAACCCCTAAC
38453827 TCTAACCCTTAACCCCTAA
1 TCTAACCCTTAACCCCTAA
38453846 ATAAACCTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.38, G:0.00, T:0.31
Consensus pattern (20 bp):
TCTAACCCTTAACCCCTAAC
Found at i:38454348 original size:41 final size:41
Alignment explanation
Indices: 38454293--38454517 Score: 335
Period size: 41 Copynumber: 5.5 Consensus size: 41
38454283 GCGCTTCCTC
* *
38454293 AAAAAACGCAGCTAAAGACCTGATCATTAGCGGCGCTTATT
1 AAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTATT
38454334 AAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTATT
1 AAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTATT
*
38454375 CAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTATT
1 AAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTATT
* *
38454416 CAAAAACGCCGCTAAAGACATGAGCATTAGCGGCGCTTATT
1 AAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTATT
* * *
38454457 CAAAAATGCCGCTAAAGACTTGAGCATTAGCGGCGCTT-TT
1 AAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTATT
* **
38454497 CAGAAATTGCCGCTAAAGACC
1 -AAAAAACGCCGCTAAAGACC
38454518 CCAAAAAACT
Statistics
Matches: 173, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 2 0.01
41 171 0.99
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.20
Consensus pattern (41 bp):
AAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTATT
Found at i:38454609 original size:39 final size:39
Alignment explanation
Indices: 38454549--38454683 Score: 128
Period size: 40 Copynumber: 3.4 Consensus size: 39
38454539 GGGCTTAGGC
* * *
38454549 TTTTT-GCGGCGCTTTCCAAAAAACGCCGCTAATGCTTT
1 TTTTTAGCGGCGTTTTTCAAAAAACGCCGCTAATGCTTA
* * * *
38454587 TTTTTAGCGGCGTTTTTTAAAAATCGCCGCTAATGATCGA
1 TTTTTAGCGGCGTTTTTCAAAAAACGCCGCTAATGCT-TA
** * * *
38454627 CCTTTAGCGGCGTTTTTCCAAAAGCGCCGCTACTGCTTCA
1 TTTTTAGCGGCGTTTTTCAAAAAACGCCGCTAATGCTT-A
*
38454667 TTTTTAGTGGCGTTTTT
1 TTTTTAGCGGCGTTTTT
38454684 TGTCCAAACG
Statistics
Matches: 76, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
38 5 0.07
39 26 0.34
40 45 0.59
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (39 bp):
TTTTTAGCGGCGTTTTTCAAAAAACGCCGCTAATGCTTA
Done.