Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 ID=Chr13-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58321163
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 747533 characters in sequence are not A, C, G, or T
File 176 of 199
Found at i:50885849 original size:22 final size:22
Alignment explanation
Indices: 50885807--50885850 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
50885797 AATTAGTTTG
* *
50885807 GATTATAGTAGAATATGTTAAA
1 GATTATAGTAGAAAATATTAAA
50885829 GATTATAGT-GAAAAGTATTAAA
1 GATTATAGTAGAAAA-TATTAAA
50885851 TTAAGCTTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.34
Consensus pattern (22 bp):
GATTATAGTAGAAAATATTAAA
Found at i:50887677 original size:54 final size:54
Alignment explanation
Indices: 50887614--50887732 Score: 184
Period size: 54 Copynumber: 2.2 Consensus size: 54
50887604 GTTTTAATAA
50887614 CAATAATGCAGATCAAAATGAGTAATCCACCTTTCAACTTTCTTTTTCTAACAG
1 CAATAATGCAGATCAAAATGAGTAATCCACCTTTCAACTTTCTTTTTCTAACAG
* * * * * *
50887668 CTATAATGCAAATCAAAATTAGTAATCCATCTTTCAACTTTCTTTTTTTAACAT
1 CAATAATGCAGATCAAAATGAGTAATCCACCTTTCAACTTTCTTTTTCTAACAG
50887722 CAATAATGCAG
1 CAATAATGCAG
50887733 TTGAGAATTA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (54 bp):
CAATAATGCAGATCAAAATGAGTAATCCACCTTTCAACTTTCTTTTTCTAACAG
Found at i:50892412 original size:3 final size:3
Alignment explanation
Indices: 50892400--50892443 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
50892390 ATGAATGAAC
50892400 TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
50892444 CTTAATTAGT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:50894062 original size:41 final size:41
Alignment explanation
Indices: 50893999--50894532 Score: 376
Period size: 41 Copynumber: 12.6 Consensus size: 41
50893989 TTTTAGTTTA
* * * * *
50893999 CTCCACTTCAACTTTAGGGAGATAAGACTGGATATGATCTG
1 CTCCACTGCAACTTCAGAGAGATAAGACTGGTTTTGATCTG
* *
50894040 CTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTTAATCTG
1 CTCCACTGCAACTTCAGAGAGATAAGA-C--TGG-TTTTGATCTG
* * * *
50894085 CTCCACTGCAACTTCAGGGAAATAGGATTGGTTTCTTCTG-TCTG
1 CTCCACTGCAACTTCAGAGAGATAAGACTGG--T-TT-TGATCTG
* * **
50894129 CTCCACTGCAACTTCAAAGAGATAAGACTGGATGCGATCTG
1 CTCCACTGCAACTTCAGAGAGATAAGACTGGTTTTGATCTG
* * *
50894170 CTCTACTGCAACTTCAGAGAGATAAGATCCATGTTTTTAATCTG
1 CTCCACTGCAACTTCAGAGAGATAAGA--C-TGGTTTTGATCTG
* * ** *
50894214 TTCCACTGCAACTTCAGAGAGATAAGACTGGATGCGGTCTG
1 CTCCACTGCAACTTCAGAGAGATAAGACTGGTTTTGATCTG
* * * *
50894255 CTCTATTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCT-
1 CTCCACTGCAACTTCAGAGAGATAAGA-C--TGGTTTTGAT-CTG
** * * * * * *
50894299 CTTTACTACAACTTCAGGGAGATATGATTGACTTCTG-TCTG
1 CTCCACTGCAACTTCAGAGAGATAAGACTG-GTTTTGATCTG
* * ***
50894340 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCAATCAT-
1 CTCCACTGCAACTTCAGAGAGATAAGACTGGTTTTGATC-TG
* * *
50894381 CTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCG
1 CTCCACTGCAACTTCAGAGAGATAAGA-C--TGGTTTTGATCTG
* * *
50894425 CTCCACTGCAACTTCAGGGAGATAGGATTGGCTTTTG-TCTG
1 CTCCACTGCAACTTCAGAGAGATAAGACTGG-TTTTGATCTG
* *
50894466 CTCCACTGCAACTTCAGAGAGATAAGATCTTTGGTTTTAATCCG
1 CTCCACTGCAACTTCAGAGAGATAAGA-C--TGGTTTTGATCTG
*
50894510 CTCCACTGCAACTTCAGGGAGAT
1 CTCCACTGCAACTTCAGAGAGAT
50894533 GGAATTAGTA
Statistics
Matches: 384, Mismatches: 81, Indels: 53
0.74 0.16 0.10
Matches are distributed among these distances:
40 4 0.01
41 169 0.44
42 15 0.04
43 7 0.02
44 156 0.41
45 33 0.09
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (41 bp):
CTCCACTGCAACTTCAGAGAGATAAGACTGGTTTTGATCTG
Found at i:50894073 original size:85 final size:85
Alignment explanation
Indices: 50893963--50894532 Score: 455
Period size: 85 Copynumber: 6.7 Consensus size: 85
50893953 CCACTCTGCC
* * * * * * *
50893963 GCAACTTCAG-GGGATAAGATTTGTGGTTTTAGTTTACTCCACTTCAACTTTAGGGAGATAAGAC
1 GCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAC
* * * *
50894027 TGGATATGATCTGCTCTACT
66 TGGTTTTAATCTGCTCCACT
* *
50894047 GCAACTTCAGAGAGATAAGATCTGTGGTTTTTAATCTGCTCCACTGCAACTTCAGGGAAATAGGA
1 GCAACTTCAGAGAGATAAGATCTGTGG-TTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
* **
50894112 TTGGTTTCTTCTGTCTGCTCCACT
65 CTGG-TT-TT-AATCTGCTCCACT
* * *** * *
50894136 GCAACTTCAAAGAGATAAGA-C--TGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGAT
1 GCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-
* *
50894198 CCATGTTTTTAATCTGTTCCACT
65 -C-TGGTTTTAATCTGCTCCACT
* **** * * * *
50894221 GCAACTTCAGAGAGATAAGA-C--TGGATGCGGTCTGCTCTATTACAACTTCAGAGAGATAAGAT
1 GCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-
**
50894283 CTGTGGTTTTAATCCT-CTTTACT
65 C--TGGTTTTAAT-CTGCTCCACT
* * * ** * *
50894306 ACAACTTCAGGGAGATATGAT-TG-ACTTCT-GTCTGCTCCACTGCAACTTCAGGGAGATAAGAC
1 GCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAC
* ** *
50894368 TGGATGCAATCAT-CTCTACT
66 TGGTTTTAATC-TGCTCCACT
* * *
50894388 GCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGAT
1 GCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAC
*
50894453 TGGCTTTT-GTCTGCTCCACT
66 TGG-TTTTAATCTGCTCCACT
* *
50894473 GCAACTTCAGAGAGATAAGATCTTTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
1 GCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGAT
50894533 GGAATTAGTA
Statistics
Matches: 396, Mismatches: 71, Indels: 37
0.79 0.14 0.07
Matches are distributed among these distances:
81 1 0.00
82 32 0.08
83 2 0.01
84 16 0.04
85 267 0.67
86 42 0.11
87 3 0.01
88 4 0.01
89 29 0.07
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (85 bp):
GCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAC
TGGTTTTAATCTGCTCCACT
Found at i:50894345 original size:126 final size:126
Alignment explanation
Indices: 50894210--50894492 Score: 433
Period size: 126 Copynumber: 2.2 Consensus size: 126
50894200 ATGTTTTTAA
* ** *
50894210 TCTGTTCCACTGCAACTTCAGAGAGATAAGACTGGATGCGGTC-TGCTCTATTACAACTTCAGAG
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGACTGGATGCAATCAT-CTCTACTACAACTTCAGAG
* ** *
50894274 AGATAAGATCTGTGGTTTTAATCCTCTTTACTACAACTTCAGGGAGATATGATTGACTTCTG
65 AGATAAGATCTGTGGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTGACTTCTG
* *
50894336 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCAATCATCTCTACTGCAACTTCAGAGA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGACTGGATGCAATCATCTCTACTACAACTTCAGAGA
* * *
50894401 GATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGCTTTTG
66 GATAAGATCTGTGGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTGACTTCTG
50894462 TCTGCTCCACTGCAACTTCAGAGAGATAAGA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGA
50894493 TCTTTGGTTT
Statistics
Matches: 142, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
126 141 0.99
127 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (126 bp):
TCTGCTCCACTGCAACTTCAGAGAGATAAGACTGGATGCAATCATCTCTACTACAACTTCAGAGA
GATAAGATCTGTGGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTGACTTCTG
Found at i:50894399 original size:211 final size:213
Alignment explanation
Indices: 50893999--50894532 Score: 734
Period size: 211 Copynumber: 2.5 Consensus size: 213
50893989 TTTTAGTTTA
* * *
50893999 CTCCACTTCAACTTTAGGGAGATAAGACTGGATATGATCTGCTCTACTGCAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATATGGTCTGCTCTACTGCAACTTCAGAGAGATA
* *
50894064 AGATCTGTGGTTTTTAAT-CTGCTCCACTGCAACTTCAGGGAAATAGGATTGGTTTCTTCTGTCT
66 AGATCTGTGG-TTTTAATCCT-CTCCACTGCAACTTCAGGGAGATAGGATTGG-TACTTCTGTCT
*
50894128 GCTCCACTGCAACTTCAAAGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGAT
128 GCTCCACTGCAACTTCAAAGAGATAAGACTGGATGCAATCTGCTCTACTGCAACTTCAGAGAGAT
* *
50894193 AAGATCCATGTTTTTAATCTG
193 AAGATCCATGGTTTTAATCCG
* * ** * *
50894214 TTCCACTGCAACTTCAGAGAGATAAGACTGGATGCGGTCTGCTCTATTACAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATATGGTCTGCTCTACTGCAACTTCAGAGAGATA
** * *
50894279 AGATCTGTGGTTTTAATCCTCTTTACTACAACTTCAGGGAGATATGATT-G-ACTTCTGTCTGCT
66 AGATCTGTGGTTTTAATCCTCTCCACTGCAACTTCAGGGAGATAGGATTGGTACTTCTGTCTGCT
**
50894342 CCACTGCAACTTCAGGGAGATAAGACTGGATGCAATCAT-CTCTACTGCAACTTCAGAGAGATAA
131 CCACTGCAACTTCAAAGAGATAAGACTGGATGCAATC-TGCTCTACTGCAACTTCAGAGAGATAA
**
50894406 GATCTGTGGTTTTAATCCG
195 GATCCATGGTTTTAATCCG
* * * * * *
50894425 CTCCACTGCAACTTCAGGGAGATAGGATTGGCTTTTGTCTGCTCCACTGCAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATATGGTCTGCTCTACTGCAACTTCAGAGAGATA
* *
50894490 AGATCTTTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGAT
66 AGATCTGTGGTTTTAATCCTCTCCACTGCAACTTCAGGGAGAT
50894533 GGAATTAGTA
Statistics
Matches: 279, Mismatches: 38, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
211 178 0.64
212 1 0.00
213 1 0.00
214 31 0.11
215 68 0.24
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (213 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTGGATATGGTCTGCTCTACTGCAACTTCAGAGAGATA
AGATCTGTGGTTTTAATCCTCTCCACTGCAACTTCAGGGAGATAGGATTGGTACTTCTGTCTGCT
CCACTGCAACTTCAAAGAGATAAGACTGGATGCAATCTGCTCTACTGCAACTTCAGAGAGATAAG
ATCCATGGTTTTAATCCG
Found at i:50894660 original size:43 final size:42
Alignment explanation
Indices: 50894592--50894841 Score: 148
Period size: 43 Copynumber: 5.8 Consensus size: 42
50894582 TAGTGGTTTA
*
50894592 AATCTGCTTCC-CTACTACCTT-GGGAGAATAAGATTCGCTATTT
1 AATCTGC-TCCACTACT-GCTTAGGGAG-ATAAGATTCGCTATTT
* * * *
50894635 AATCTGCTCCACTACTGCTTAGGGAGACAGGATTTGCGATCTTT
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGA-TT-CGCTATTT
* * * * * * * *
50894679 AACCTACTCCACTGCTGCTCAAGGAGATAAGGCTGGCGCT-TTC
1 AATCTGCTCCACTACTGCTTAGGGAGATAA-GAT-TCGCTATTT
* * * *
50894722 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGATCTTT
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGAT-T-CGCTATTT
* * * ** *
50894766 AACCTACTCCACTGCTGCTTAGGGAGATAAGGCTGGC-ACTTT
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATTCGCTA-TTT
* *
50894808 CGATCTGCTCTACTACTGCTTAGGGAGATAAGAT
1 -AATCTGCTCCACTACTGCTTAGGGAGATAAGAT
50894842 CTGTAATCTT
Statistics
Matches: 153, Mismatches: 44, Indels: 20
0.71 0.20 0.09
Matches are distributed among these distances:
42 16 0.10
43 74 0.48
44 62 0.41
45 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (42 bp):
AATCTGCTCCACTACTGCTTAGGGAGATAAGATTCGCTATTT
Found at i:50894727 original size:87 final size:87
Alignment explanation
Indices: 50894636--50894888 Score: 407
Period size: 87 Copynumber: 2.9 Consensus size: 87
50894626 TCGCTATTTA
* * * * *
50894636 ATCTGCTCCACTACTGCTTAGGGAGACAGGATTTGCGATCTTTAACCTACTCCACTGCTGCTCAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGATCTTTAACCTACTCCACTGCTGCTCAG
*
50894701 GGAGATAAGGCTGGCGCTTTCG
66 GGAGATAAGGCTGGCACTTTCG
*
50894723 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGATCTTTAACCTACTCCACTGCTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGATCTTTAACCTACTCCACTGCTGCTCAG
50894788 GGAGATAAGGCTGGCACTTTCG
66 GGAGATAAGGCTGGCACTTTCG
* * **
50894810 ATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTAATCTTCGACCTACTCCACTGCTGCTCAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGATCTTTAACCTACTCCACTGCTGCTCAG
50894875 GGAGATAAGGCTGG
66 GGAGATAAGGCTGG
50894889 TGGCTTAAAT
Statistics
Matches: 154, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 154 1.00
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (87 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGATCTTTAACCTACTCCACTGCTGCTCAG
GGAGATAAGGCTGGCACTTTCG
Found at i:50894976 original size:132 final size:132
Alignment explanation
Indices: 50894806--50895438 Score: 948
Period size: 132 Copynumber: 4.8 Consensus size: 132
50894796 GGCTGGCACT
*
50894806 TTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTAATCTTCGACCTACTCCACTGCTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCGACCTACTCCACTGCTGC
* * **
50894871 TCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTACCTTGAGAAGATAAGATTCTTCG
66 TCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAAATAAGATTCGCCG
50894936 TC
131 TC
* * * *
50894938 -TCTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATATTCAACCTACTCCACTGCAG
1 TTC-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCGACCTACTCCACTGCTG
* *
50895002 CTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTTGCC
65 CTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAAATAAGATTCGCC
*
50895067 ATC
130 GTC
* * * * ** *
50895070 TTCGATCTACTCCACTACTGCTTAGGGGGATAGGATCTGCAATCTTTAACCTACTCCACTGCTAC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCGACCTACTCCACTGCTGC
*
50895135 TCAGGGAGAT-AGGACTGGTGGCTTAAATCTGCTTCCCTACTACATTGGGAAAATAAGATTCGCC
66 TCAGGGAGATAAGG-CTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAAATAAGATTCGCC
50895199 GTC
130 GTC
*
50895202 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTGACCTACTCCACTGCTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCGACCTACTCCACTGCTGC
* *
50895267 TCAGGGAGAT-AGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAAATAAGATTCGTC
66 TCAGGGAGATAAGG-CTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAAATAAGATTCGCC
50895331 GTC
130 GTC
* * * *
50895334 TTCGATCTACTCCACTACTGCTTAGGGAGATAAGATTTGTAATCTTCGACCTACTCAACTGCTGA
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCGACCTACTCCACTGCTGC
* * *
50895399 TCAGGGAGATAAAGCTGGTGGCTTAAATTTGTTTCCCTAC
66 TCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTAC
50895439 CGGTACAGGA
Statistics
Matches: 459, Mismatches: 38, Indels: 8
0.91 0.08 0.02
Matches are distributed among these distances:
131 5 0.01
132 450 0.98
133 4 0.01
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (132 bp):
TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCGACCTACTCCACTGCTGC
TCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAAATAAGATTCGCCG
TC
Found at i:50895367 original size:44 final size:44
Alignment explanation
Indices: 50894636--50895410 Score: 234
Period size: 44 Copynumber: 17.7 Consensus size: 44
50894626 TCGCTATTTA
* * * * * **
50894636 ATCTGCTCCACTACTGCTTAGGGAGACAGGATTTG-CGATCTTTA
1 ATCTACTCCACTACTGCTTAGGGAGATAAGACTCGTCG-TCTTCG
* * * * * *
50894680 ACCTACTCCACTGCTGCTCAAGGAGATAAGGCT-GGCG-CTTTCG
1 ATCTACTCCACTACTGCTTAGGGAGATAAGACTCGTCGTC-TTCG
* **
50894723 ATCTGCTCCACTACTGCTTAGGGAGATAAGA-TCTGT-GATCTTTA
1 ATCTACTCCACTACTGCTTAGGGAGATAAGACTC-GTCG-TCTTCG
* * * * *
50894767 ACCTACTCCACTGCTGCTTAGGGAGATAAGGCT-GGC-ACTTTCG
1 ATCTACTCCACTACTGCTTAGGGAGATAAGACTCGTCGTC-TTCG
* * **
50894810 ATCTGCTCTACTACTGCTTAGGGAGATAAGA-TCTGTAATCTTCG
1 ATCTACTCCACTACTGCTTAGGGAGATAAGACTC-GTCGTCTTCG
* * * * * * **
50894854 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGT-GGCTTAA
1 ATCTACTCCACTACTGCTTAGGGAGATAAGACTCGTCGTCTTCG
* * * * *
50894897 ATCTGCTTCC-CTACTACCTT-GAGAAGATAAGATTCTTCGTC-TCTG
1 ATCTAC-TCCACTACT-GCTTAG-GGAGATAAGACTCGTCGTCTTC-G
* * * *
50894942 ATCTGCTCCACTACTGCTTAGGGAGATAAGA-TC-TGCAATATTCA
1 ATCTACTCCACTACTGCTTAGGGAGATAAGACTCGT-C-GTCTTCG
* * * * * * * **
50894986 ACCTACTCCACTGCAGCTCAGGGAGATAAGGCTGGT-GGCTTAA
1 ATCTACTCCACTACTGCTTAGGGAGATAAGACTCGTCGTCTTCG
* * * * * *
50895029 ATCTGCTTCC-CTACTACCTT-GGGAAGATAAGATTTGCCATCTTCG
1 ATCTAC-TCCACTACT-GCTTAGGG-AGATAAGACTCGTCGTCTTCG
* * * **
50895074 ATCTACTCCACTACTGCTTAGGGGGATAGGA-TC-TGCAATCTTTA
1 ATCTACTCCACTACTGCTTAGGGAGATAAGACTCGT-C-GTCTTCG
* * * * * * * **
50895118 ACCTACTCCACTGCTACTCAGGGAGATAGGACTGGT-GGCTTAA
1 ATCTACTCCACTACTGCTTAGGGAGATAAGACTCGTCGTCTTCG
* * * * *
50895161 ATCTGCTTCC-CTACTACATT-GGGAAAATAAGATTCGCCGTCTTCG
1 ATCTAC-TCCACTACTGC-TTAGGG-AGATAAGACTCGTCGTCTTCG
* ** *
50895206 ATCTGCTCCACTACTGCTTAGGGAGATAAGA-TCTGTAATCTTTG
1 ATCTACTCCACTACTGCTTAGGGAGATAAGACTC-GTCGTCTTCG
* * * * * * **
50895250 ACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGT-GGCTTAA
1 ATCTACTCCACTACTGCTTAGGGAGATAAGACTCGTCGTCTTCG
* * * * *
50895293 ATCTGCTTCC-CTACTACCTT-GGAAAAATAAGATTCGTCGTCTTCG
1 ATCTAC-TCCACTACT-GCTTAGG-GAGATAAGACTCGTCGTCTTCG
* * **
50895338 ATCTACTCCACTACTGCTTAGGGAGATAAGATTTGTAATCTTCG
1 ATCTACTCCACTACTGCTTAGGGAGATAAGACTCGTCGTCTTCG
* * * * *
50895382 ACCTACTCAACTGCTGATCAGGGAGATAA
1 ATCTACTCCACTACTGCTTAGGGAGATAA
50895411 AGCTGGTGGC
Statistics
Matches: 522, Mismatches: 160, Indels: 98
0.67 0.21 0.13
Matches are distributed among these distances:
42 5 0.01
43 120 0.23
44 321 0.61
45 74 0.14
46 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.29
Consensus pattern (44 bp):
ATCTACTCCACTACTGCTTAGGGAGATAAGACTCGTCGTCTTCG
Found at i:50896402 original size:5 final size:5
Alignment explanation
Indices: 50896392--50896443 Score: 59
Period size: 5 Copynumber: 10.0 Consensus size: 5
50896382 TTCACCTTGG
* * *
50896392 CTTTT CTTTT CTTTTT GTTCTT CTTTT CTTTT TTTTT CTTTT CGTTT CTTTT
1 CTTTT CTTTT C-TTTT CTT-TT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT
50896444 TTCCAAGTGA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
5 31 0.79
6 8 0.21
ACGTcount: A:0.00, C:0.17, G:0.04, T:0.79
Consensus pattern (5 bp):
CTTTT
Found at i:50896417 original size:17 final size:15
Alignment explanation
Indices: 50896393--50896446 Score: 72
Period size: 17 Copynumber: 3.3 Consensus size: 15
50896383 TCACCTTGGC
50896393 TTTTCTTTTCTTTTT
1 TTTTCTTTTCTTTTT
50896408 GTTCTTCTTTTCTTTTT
1 -TT-TTCTTTTCTTTTT
50896425 TTTTCTTTTCGTTTCTT
1 TTTTCTTTTC-TTT-TT
50896442 TTTTC
1 TTTTC
50896447 CAAGTGAAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.23
16 7 0.20
17 20 0.57
ACGTcount: A:0.00, C:0.17, G:0.04, T:0.80
Consensus pattern (15 bp):
TTTTCTTTTCTTTTT
Found at i:50896422 original size:27 final size:27
Alignment explanation
Indices: 50896392--50896446 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
50896382 TTCACCTTGG
*
50896392 CTTTTCTTTTCTTTTTG-TTCTTCTTTT
1 CTTTTCTTTTCTTTTCGTTTCTT-TTTT
*
50896419 CTTTTTTTTTCTTTTCGTTTCTTTTTT
1 CTTTTCTTTTCTTTTCGTTTCTTTTTT
50896446 C
1 C
50896447 CAAGTGAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.00, C:0.18, G:0.04, T:0.78
Consensus pattern (27 bp):
CTTTTCTTTTCTTTTCGTTTCTTTTTT
Found at i:50899655 original size:19 final size:20
Alignment explanation
Indices: 50899631--50899677 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
50899621 TGTGAAAATC
*
50899631 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGCAATG
*
50899650 TAATGCAAATGCATGGAATG
1 TAATGCAAATGCATGCAATG
50899670 -AATGCAAA
1 TAATGCAAA
50899678 AAGAAAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.26
Consensus pattern (20 bp):
TAATGCAAATGCATGCAATG
Found at i:50901771 original size:2 final size:2
Alignment explanation
Indices: 50901757--50901801 Score: 74
Period size: 2 Copynumber: 22.5 Consensus size: 2
50901747 TGTAAGTAGG
50901757 TA TA TA T- TCA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
50901799 TA T
1 TA T
50901802 TAGAAAAATA
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 1 0.02
2 39 0.95
3 1 0.02
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:50902133 original size:3 final size:3
Alignment explanation
Indices: 50902125--50902165 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
50902115 GAACTAATAC
50902125 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
50902166 CTTAATTAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:50911111 original size:174 final size:174
Alignment explanation
Indices: 50910821--50911160 Score: 538
Period size: 174 Copynumber: 2.0 Consensus size: 174
50910811 TAGCAGTTCT
* *
50910821 AAATTCAATTACAAAGGCCTTAAAGCTTGAGTTTAAAAGAACATTGTTACTTGATATATCTGAAT
1 AAATTCAATTACAAAGGCCTTAAAGATCGAGTTTAAAAGAACATTGTTACTTGATATATCTGAAT
*
50910886 GAACTATTTAACAACTACAATCATAGTGCAAGTACAACAAAGCATGTGTTATGCCTTTGATGATC
66 GAACTATTGAACAACTACAATCATAGTGCAAGTACAACAAAGCATGTGTTATGCCTTTGATGATC
*
50910951 TCCACTCTTTTCATCCAATTCATTTCAACTGCTTGAACAGCTCC
131 TCCACTCTTTTCATCCAATTCATTTCAACAGCTTGAACAGCTCC
* * *
50910995 AAATTCAGTTACAAAGGTCTTAAAGATCGAGTTTAAAATAACATTGTTACTTGATATATCTCG-A
1 AAATTCAATTACAAAGGCCTTAAAGATCGAGTTTAAAAGAACATTGTTACTTGATATATCT-GAA
* * *
50911059 TGAACTATTGGACGACTACAATCATAGTGCAAGTACGACAAAGCATGTGTTATGCCTTTGATGAT
65 TGAACTATTGAACAACTACAATCATAGTGCAAGTACAACAAAGCATGTGTTATGCCTTTGATGAT
* ** *
50911124 CTCCACTCTTTTCGTCTGATTCATTTCCACAGCTTGA
130 CTCCACTCTTTTCATCCAATTCATTTCAACAGCTTGA
50911161 GCTTGTACGA
Statistics
Matches: 151, Mismatches: 14, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
174 150 0.99
175 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (174 bp):
AAATTCAATTACAAAGGCCTTAAAGATCGAGTTTAAAAGAACATTGTTACTTGATATATCTGAAT
GAACTATTGAACAACTACAATCATAGTGCAAGTACAACAAAGCATGTGTTATGCCTTTGATGATC
TCCACTCTTTTCATCCAATTCATTTCAACAGCTTGAACAGCTCC
Found at i:50920801 original size:25 final size:23
Alignment explanation
Indices: 50920746--50920801 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
50920736 TTCATAGTTG
*
50920746 ATTTGAAATGGATTGATTTGTAT
1 ATTTGAAATGGATTGATTTGTAA
*
50920769 ATTATGAAATGTATTGATTATGTAA
1 ATT-TGAAATGGATTGATT-TGTAA
50920794 ATATTGAA
1 AT-TTGAA
50920802 TTGACTATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 3 0.11
24 14 0.50
25 10 0.36
26 1 0.04
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.45
Consensus pattern (23 bp):
ATTTGAAATGGATTGATTTGTAA
Found at i:50923052 original size:2 final size:2
Alignment explanation
Indices: 50923045--50923079 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
50923035 CGCTAATTCG
* *
50923045 TA TA TA TA TA TA TA TA TA TA TG TA TG TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
50923080 TGTAATTTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (2 bp):
TA
Found at i:50927239 original size:3 final size:3
Alignment explanation
Indices: 50927233--50927264 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
50927223 CATCAATGTA
50927233 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
50927265 ACATAATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:50927277 original size:12 final size:12
Alignment explanation
Indices: 50927233--50927278 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
50927223 CATCAATGTA
50927233 AATAATAATA-AT
1 AATAATAA-ACAT
50927245 AATAATAATA-AT
1 AATAATAA-ACAT
50927257 AATAATAAACAT
1 AATAATAAACAT
*
50927269 AATATTAAAC
1 AATAATAAAC
50927279 TGGTTTTCCC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
11 1 0.03
12 31 0.97
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.30
Consensus pattern (12 bp):
AATAATAAACAT
Found at i:50932221 original size:2 final size:2
Alignment explanation
Indices: 50932214--50932247 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
50932204 AGTTTCACAA
50932214 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
50932248 CCTGTTGCGC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:50933382 original size:125 final size:125
Alignment explanation
Indices: 50933057--50933421 Score: 570
Period size: 124 Copynumber: 2.9 Consensus size: 125
50933047 AGTCCGAGAA
*** * *
50933057 GAAATAATTTTGAGTTGACGTTTCTAATCAAATAGTATAAAATCGCTTCTAGCAAGATGCTATTT
1 GAAATAATTTTTTTTTGACGTTTCTAAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTT
* * * * *
50933122 GAGAAGAATTTGTGAAATCGCGTCCTCATGGACGTGCTTTTGCTATAGTAGGTCATGGAT
66 GAGAAGAATTTGTAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGGAT
*
50933182 GAAATAA-TTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTT
1 GAAATAATTTTTTTTTGACGTTTCTAAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTT
* * *
50933246 AAGAATAATTTGTAAAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAGGTCATGGAT
66 GAGAAGAATTTGTAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGGAT
* *
50933306 GAAATAATTTTTTTTTGACATTTCTAAGAAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTT
1 GAAATAATTTTTTTTTGACGTTTCTAAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTT
50933371 GAGAAGAATTTGTGAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTA
66 GAGAAGAATTTGT-AAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTA
50933422 ACATGTTTGG
Statistics
Matches: 218, Mismatches: 20, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
124 110 0.50
125 72 0.33
126 36 0.17
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (125 bp):
GAAATAATTTTTTTTTGACGTTTCTAAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTT
GAGAAGAATTTGTAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGGAT
Found at i:50936785 original size:69 final size:69
Alignment explanation
Indices: 50936697--50937295 Score: 720
Period size: 69 Copynumber: 8.5 Consensus size: 69
50936687 TTAGGGTTAG
50936697 GGTTAGGGTTTTCAATTTAATTAGGTTAGGGTTTAGGGTTTAATTAGGTTAGGGTTTTCAATTTA
1 GGTTAGGGTTTTCAATTTAATTAGGTTAGGGTTTAGGGTTTAATTAGGTTAGGGTTTTCAATTTA
50936762 ATTA
66 ATTA
**
50936766 GGTTAGTTTTTTCAATTTAATTAGGTTAGGGTTTAGGGTTTTCAATTTAATTAGGTTAGGGTTTT
1 GGTTAGGGTTTTCAATTTAATTAGGTTAGGGTTTAGGG-------TTTAATTAGGTTAGGGTTTT
50936831 CAATTTAATTA
59 CAATTTAATTA
** * *
50936842 GGTTAGTTTTTTCAATTTAATTAGGTTAGGGTTTAGGGTTTAATTAGGTTAAGGTTTTTAATTTA
1 GGTTAGGGTTTTCAATTTAATTAGGTTAGGGTTTAGGGTTTAATTAGGTTAGGGTTTTCAATTTA
50936907 ATTA
66 ATTA
** **** ****
50936911 GGTTAGGGTTTTCAATTTAATTAGGTTAGTTTTTTTAATTTAATTAGGTTAGGGTTTAGGGTTTA
1 GGTTAGGGTTTTCAATTTAATTAGGTTAGGGTTTAGGGTTTAATTAGGTTAGGGTTTTCAATTTA
50936976 ATTA
66 ATTA
*
50936980 GGTTAAGGTTTTCAATTTAATTAGGTTAGGGTTTAGGGTTTAATTAGGTTAGGGTTTTCAATTTA
1 GGTTAGGGTTTTCAATTTAATTAGGTTAGGGTTTAGGGTTTAATTAGGTTAGGGTTTTCAATTTA
50937045 ATTA
66 ATTA
**** *
50937049 GGTTAGGGTTTAGGGTTTAATTAGGTTAGGG-TTAGGGTTTAATTAGGTTAGGGTTTTTAATTTA
1 GGTTAGGGTTTTCAATTTAATTAGGTTAGGGTTTAGGGTTTAATTAGGTTAGGGTTTTCAATTTA
50937113 ATTA
66 ATTA
* **
50937117 GGTTAGGGTTTTCTTTTTAATTTAATTAGGTTAGGGTTTTGAATTTAATTAGGTTAGGGTTTTCT
1 GGTTAGGGTTTTC-----AATTTAATTAGGTTAGGGTTTAGGGTTTAATTAGGTTAGGG-----T
50937182 TTTCAATTTAATTA
56 TTTCAATTTAATTA
**** * * *
50937196 GGTTAGGGTTTAGGGTTTAATTAGATTAGGGTTT---TTTTAATTAGGTTAGGGTTTTTAATTTA
1 GGTTAGGGTTTTCAATTTAATTAGGTTAGGGTTTAGGGTTTAATTAGGTTAGGGTTTTCAATTTA
50937258 ATTA
66 ATTA
*
50937262 GGTTAGGGTTTTCAATTTAATTGGGTTAGGGTTT
1 GGTTAGGGTTTTCAATTTAATTAGGTTAGGGTTT
50937296 TCTTTTCAAA
Statistics
Matches: 457, Mismatches: 55, Indels: 39
0.83 0.10 0.07
Matches are distributed among these distances:
66 42 0.09
68 47 0.10
69 205 0.45
71 16 0.04
73 16 0.04
74 37 0.08
76 69 0.15
79 25 0.05
ACGTcount: A:0.24, C:0.02, G:0.25, T:0.49
Consensus pattern (69 bp):
GGTTAGGGTTTTCAATTTAATTAGGTTAGGGTTTAGGGTTTAATTAGGTTAGGGTTTTCAATTTA
ATTA
Found at i:50937122 original size:28 final size:29
Alignment explanation
Indices: 50937094--50937213 Score: 103
Period size: 28 Copynumber: 4.4 Consensus size: 29
50937084 GGTTTAATTA
50937094 GGTTAGGGTTTTTAATTTAATTAGGTTAG
1 GGTTAGGGTTTTTAATTTAATTAGGTTAG
***
50937123 GGTT-TTCTTTTTAATTT-A--A--TTA-
1 GGTTAGGGTTTTTAATTTAATTAGGTTAG
*
50937145 GGTTAGGGTTTTGAATTTAATTAGGTTAG
1 GGTTAGGGTTTTTAATTTAATTAGGTTAG
*** *
50937174 GGTT-TTCTTTTCAATTTAATTAGGTTAG
1 GGTTAGGGTTTTTAATTTAATTAGGTTAG
50937202 GGTTTAGGGTTT
1 GG-TTAGGGTTT
50937214 AATTAGATTA
Statistics
Matches: 68, Mismatches: 14, Indels: 17
0.69 0.14 0.17
Matches are distributed among these distances:
22 4 0.06
23 12 0.18
24 1 0.01
25 1 0.01
26 1 0.01
27 1 0.01
28 35 0.51
29 10 0.15
30 3 0.04
ACGTcount: A:0.22, C:0.03, G:0.24, T:0.52
Consensus pattern (29 bp):
GGTTAGGGTTTTTAATTTAATTAGGTTAG
Found at i:50937217 original size:28 final size:29
Alignment explanation
Indices: 50937147--50937225 Score: 83
Period size: 28 Copynumber: 2.8 Consensus size: 29
50937137 TTTAATTAGG
*
50937147 TTAGGGTTTTGAATTTAATTAGGTTAGGGT
1 TTAGGG-TTTCAATTTAATTAGGTTAGGGT
***
50937177 TT-TCTTTTCAATTTAATTAGGTTAGGGT
1 TTAGGGTTTCAATTTAATTAGGTTAGGGT
50937205 TTAGGGTTT-AA-TTAGATTAGG
1 TTAGGGTTTCAATTTA-ATTAGG
50937226 GTTTTTTTAA
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
27 3 0.08
28 32 0.80
29 3 0.08
30 2 0.05
ACGTcount: A:0.24, C:0.03, G:0.25, T:0.48
Consensus pattern (29 bp):
TTAGGGTTTCAATTTAATTAGGTTAGGGT
Found at i:50937290 original size:28 final size:23
Alignment explanation
Indices: 50936697--50937297 Score: 634
Period size: 23 Copynumber: 25.6 Consensus size: 23
50936687 TTAGGGTTAG
50936697 GGTTAGGGTTTTCAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
****
50936720 GGTTAGGGTTTAGGGTTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
50936743 GGTTAGGGTTTTCAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
**
50936766 GGTTAGTTTTTTCAATTTAATTAGGTTA
1 GGTTAGGGTTTTCAATTT-A--A--TTA
50936794 GGGTTTAGGGTTTTCAATTTAATTA
1 -GG-TTAGGGTTTTCAATTTAATTA
50936819 GGTTAGGGTTTTCAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
**
50936842 GGTTAGTTTTTTCAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
****
50936865 GGTTAGGGTTTAGGGTTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
* *
50936888 GGTTAAGGTTTTTAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
50936911 GGTTAGGGTTTTCAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
** *
50936934 GGTTAGTTTTTTTAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
****
50936957 GGTTAGGGTTTAGGGTTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
*
50936980 GGTTAAGGTTTTCAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
****
50937003 GGTTAGGGTTTAGGGTTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
50937026 GGTTAGGGTTTTCAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
****
50937049 GGTTAGGGTTTAGGGTTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
****
50937072 GGTTAGGG-TTAGGGTTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
*
50937094 GGTTAGGGTTTTTAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
50937117 GGTTAGGGTTTTCTTTTTAATTTAATTA
1 GGTTAGGGTTTTC-----AATTTAATTA
*
50937145 GGTTAGGGTTTTGAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
50937168 GGTTAGGGTTTTCTTTTCAATTTAATTA
1 GGTTAGGG-----TTTTCAATTTAATTA
****
50937196 GGTTAGGGTTTAGGGTTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
*
50937219 GATTAGGGTTTT---TTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
*
50937239 GGTTAGGGTTTTTAATTTAATTA
1 GGTTAGGGTTTTCAATTTAATTA
*
50937262 GGTTAGGGTTTTCAATTTAATTG
1 GGTTAGGGTTTTCAATTTAATTA
50937285 GGTTAGGGTTTTC
1 GGTTAGGGTTTTC
50937298 TTTTCAAATT
Statistics
Matches: 487, Mismatches: 70, Indels: 42
0.81 0.12 0.07
Matches are distributed among these distances:
20 19 0.04
22 22 0.05
23 374 0.77
24 3 0.01
25 3 0.01
26 1 0.00
27 1 0.00
28 47 0.10
29 3 0.01
30 14 0.03
ACGTcount: A:0.24, C:0.02, G:0.24, T:0.49
Consensus pattern (23 bp):
GGTTAGGGTTTTCAATTTAATTA
Found at i:50937456 original size:71 final size:69
Alignment explanation
Indices: 50937357--50937499 Score: 225
Period size: 71 Copynumber: 2.0 Consensus size: 69
50937347 CAAAATATTC
*
50937357 AAAAATTTCTATTTTATTACATAAAATAAACTTTTATTTTATTACATCAAATAATA-TCAAAATA
1 AAAAATTTCTATTTTATTACATAAAATAAACTTCTATTTTATTACATCAAATAA-ACTCAAAAT-
50937421 ACTCAA
64 ACTCAA
*
50937427 AAAAATTTCTATTTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAAACTTCAAAAT
1 AAAAATTTCTA-TTTTATTACATAAAATAAACTTCTATTTTATTACATCAAATAAAC-TCAAAAT
50937492 ACTCAA
64 ACTCAA
50937498 AA
1 AA
50937500 TATTTGTACA
Statistics
Matches: 68, Mismatches: 2, Indels: 5
0.91 0.03 0.07
Matches are distributed among these distances:
70 12 0.18
71 49 0.72
72 7 0.10
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (69 bp):
AAAAATTTCTATTTTATTACATAAAATAAACTTCTATTTTATTACATCAAATAAACTCAAAATAC
TCAA
Found at i:50937486 original size:25 final size:25
Alignment explanation
Indices: 50937363--50937486 Score: 125
Period size: 25 Copynumber: 5.1 Consensus size: 25
50937353 ATTCAAAAAT
*
50937363 TTCTATTTTATTACATAAAATAAAC
1 TTCTATTTTATTACATCAAATAAAC
*
50937388 TTTTATTTTATTACATCAAAT-AA-
1 TTCTATTTTATTACATCAAATAAAC
** * * *
50937411 TATC-A--AAATAAC-TCAAAAAAAT
1 T-TCTATTTTATTACATCAAATAAAC
50937433 TTCTATTTTTATTACATCAAATAAAC
1 TTCTA-TTTTATTACATCAAATAAAC
50937459 TTCTATTTTATTACATCAAATAAAC
1 TTCTATTTTATTACATCAAATAAAC
50937484 TTC
1 TTC
50937487 AAAATACTCA
Statistics
Matches: 79, Mismatches: 12, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
20 5 0.06
21 8 0.10
22 2 0.03
23 2 0.03
24 3 0.04
25 46 0.58
26 13 0.16
ACGTcount: A:0.44, C:0.14, G:0.00, T:0.43
Consensus pattern (25 bp):
TTCTATTTTATTACATCAAATAAAC
Found at i:50937933 original size:18 final size:18
Alignment explanation
Indices: 50937910--50937949 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
50937900 GACTCGGAAA
*
50937910 AGGATACATATAAGGGTT
1 AGGATACATATAAGGGCT
*
50937928 AGGATATATATAAGGGCT
1 AGGATACATATAAGGGCT
50937946 AGGA
1 AGGA
50937950 AACGCACCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.30, T:0.25
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:50938821 original size:21 final size:20
Alignment explanation
Indices: 50938788--50938826 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
50938778 TTTATTTTTA
*
50938788 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
*
50938808 AAAATCTAATATAAAAATT
1 AAAATCT-ACATAAAAATT
50938827 ACCTCGTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.33
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:50939812 original size:11 final size:11
Alignment explanation
Indices: 50939798--50939833 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
50939788 GAATTTTGGA
50939798 AGGAAATTGAG
1 AGGAAATTGAG
50939809 AGGAAATTGAG
1 AGGAAATTGAG
*
50939820 AGAAAATATGAG
1 AGGAAAT-TGAG
50939832 AG
1 AG
50939834 AGGATTAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 17 0.74
12 6 0.26
ACGTcount: A:0.50, C:0.00, G:0.33, T:0.17
Consensus pattern (11 bp):
AGGAAATTGAG
Found at i:50941960 original size:11 final size:11
Alignment explanation
Indices: 50941938--50941970 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
50941928 ATTTCTTTTT
50941938 TTTTTCTT-TC
1 TTTTTCTTCTC
50941948 TTTTTCTTCTC
1 TTTTTCTTCTC
*
50941959 TTCTTCTTCTC
1 TTTTTCTTCTC
50941970 T
1 T
50941971 CCTTCTTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 8 0.38
11 13 0.62
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (11 bp):
TTTTTCTTCTC
Found at i:50945110 original size:23 final size:26
Alignment explanation
Indices: 50945051--50945144 Score: 101
Period size: 26 Copynumber: 3.8 Consensus size: 26
50945041 CTCACCACAT
50945051 CTCG-TATGAGCTTACCGATATATCAG
1 CTCGATATGAGCTTACCGATAT-TCAG
*
50945077 CTC-TTATGAGCTTACCG-T-TTCAG
1 CTCGATATGAGCTTACCGATATTCAG
* *
50945100 CTCGATA-GAGCTTACCGTTCTTCAG
1 CTCGATATGAGCTTACCGATATTCAG
50945125 CTCAGA-ATGAGCTTACCGAT
1 CTC-GATATGAGCTTACCGAT
50945145 CATGGCTCGA
Statistics
Matches: 60, Mismatches: 2, Indels: 12
0.81 0.03 0.16
Matches are distributed among these distances:
23 17 0.28
24 4 0.07
25 10 0.17
26 29 0.48
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (26 bp):
CTCGATATGAGCTTACCGATATTCAG
Found at i:50946962 original size:21 final size:20
Alignment explanation
Indices: 50946934--50946977 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
50946924 TTCAATAATT
* *
50946934 ATTATATCACCTTACACTTC
1 ATTATATCACATAACACTTC
50946954 ATTACTATCACATAACACTTC
1 ATTA-TATCACATAACACTTC
50946975 ATT
1 ATT
50946978 TACGTCTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.34, C:0.27, G:0.00, T:0.39
Consensus pattern (20 bp):
ATTATATCACATAACACTTC
Found at i:50949419 original size:3 final size:3
Alignment explanation
Indices: 50949411--50949475 Score: 51
Period size: 3 Copynumber: 21.0 Consensus size: 3
50949401 GGGTTTTAAA
* * * * *
50949411 AAT AAT AAT ACT AAT AAT AAT GAG AAT AAT -AT GAAT GAT AAT AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
50949456 AAT AAT AAAT AAT GAAT AAT
1 AAT AAT -AAT AAT -AAT AAT
50949476 CTAAGGTTTG
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
2 2 0.04
3 38 0.79
4 8 0.17
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:50949663 original size:15 final size:14
Alignment explanation
Indices: 50949627--50949676 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 14
50949617 ATATGATGAT
*
50949627 AATAATAACAAGTA
1 AATAATAAAAAGTA
50949641 AATAAATAAAAAGGTA
1 AAT-AATAAAAA-GTA
*
50949657 AATAAT-AATAGT-
1 AATAATAAAAAGTA
50949669 AATAATAA
1 AATAATAA
50949677 TATTAAATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
12 6 0.19
13 3 0.10
14 6 0.19
15 10 0.32
16 6 0.19
ACGTcount: A:0.66, C:0.02, G:0.08, T:0.24
Consensus pattern (14 bp):
AATAATAAAAAGTA
Found at i:50952172 original size:2 final size:2
Alignment explanation
Indices: 50952165--50952198 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
50952155 TGGTGCTTTC
50952165 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
50952199 ATTTTGTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:50958497 original size:45 final size:45
Alignment explanation
Indices: 50958427--50958542 Score: 146
Period size: 45 Copynumber: 2.6 Consensus size: 45
50958417 TAACCTAAAC
* *
50958427 CAGAAGGCAAAGATACAGTCAGTGATGGAACAACAGATTCTGAA-
1 CAGAAGGCAAAGATACAATCAGTGATGGAACAACAGATCCTGAAT
* *
50958471 CTAGAAGGCAAAGATACAATCGGTGATGGAACAGCAGATCCTGAAT
1 C-AGAAGGCAAAGATACAATCAGTGATGGAACAACAGATCCTGAAT
* * *
50958517 CAGAAGGTAAAAATACAGT-AGTGATG
1 CAGAAGGCAAAGATACAATCAGTGATG
50958543 AGACAGTATT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
44 7 0.11
45 54 0.87
46 1 0.02
ACGTcount: A:0.42, C:0.15, G:0.26, T:0.17
Consensus pattern (45 bp):
CAGAAGGCAAAGATACAATCAGTGATGGAACAACAGATCCTGAAT
Found at i:50960712 original size:12 final size:12
Alignment explanation
Indices: 50960680--50960712 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
50960670 ATTAAGTAAA
50960680 TAAATAAAA-AT
1 TAAATAAAATAT
*
50960691 TAAATGAAATAT
1 TAAATAAAATAT
50960703 TAAATAAAAT
1 TAAATAAAAT
50960713 GTTTTTTATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (12 bp):
TAAATAAAATAT
Found at i:50963821 original size:27 final size:27
Alignment explanation
Indices: 50963753--50963849 Score: 113
Period size: 27 Copynumber: 3.5 Consensus size: 27
50963743 TATTTAATGT
* * *
50963753 TTAAAAAGTATTTGTTACACTTTTATAA
1 TTAAAAA-TATGTATTACATTTTTATAA
*
50963781 TTATAAATTATGTATTACATTTTTATAA
1 TTA-AAAATATGTATTACATTTTTATAA
* * *
50963809 TTAAAAATGTGTATTTCGTTTTTATAA
1 TTAAAAATATGTATTACATTTTTATAA
50963836 TTAAAAATATGTAT
1 TTAAAAATATGTAT
50963850 GTCAAAAAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
27 33 0.56
28 23 0.39
29 3 0.05
ACGTcount: A:0.39, C:0.04, G:0.07, T:0.49
Consensus pattern (27 bp):
TTAAAAATATGTATTACATTTTTATAA
Found at i:50964421 original size:14 final size:14
Alignment explanation
Indices: 50964387--50964428 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
50964377 ATAAGTTAAC
50964387 AAAAATATTTTATATT
1 AAAAATA-TTT-TATT
50964403 AAAAATATATTTA-T
1 AAAAATAT-TTTATT
50964417 AAAAATATTTTA
1 AAAAATATTTTA
50964429 ATTTTTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 4 0.16
14 9 0.36
15 3 0.12
16 9 0.36
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
AAAAATATTTTATT
Found at i:50968728 original size:22 final size:23
Alignment explanation
Indices: 50968703--50968750 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
50968693 TTAAAAGATT
50968703 ATTTTTTAAATT-TTTTA-ATATA
1 ATTTTTTAAATTATTTTAGATA-A
*
50968725 ATTTTTTATATTATTTTAGATAA
1 ATTTTTTAAATTATTTTAGATAA
50968748 ATT
1 ATT
50968751 ATAAATATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 11 0.48
23 9 0.39
24 3 0.13
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (23 bp):
ATTTTTTAAATTATTTTAGATAA
Found at i:50981529 original size:14 final size:14
Alignment explanation
Indices: 50981506--50981544 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
50981496 AATACTAACA
50981506 TTAAATAAATAAAT
1 TTAAATAAATAAAT
*
50981520 TTAAACAAATAAAT
1 TTAAATAAATAAAT
50981534 TGTAAATAAAT
1 T-TAAATAAAT
50981545 TTTTTATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 14 0.64
15 8 0.36
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (14 bp):
TTAAATAAATAAAT
Found at i:50983768 original size:21 final size:21
Alignment explanation
Indices: 50983729--50983789 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
50983719 GCTCATGTGA
*
50983729 AGGCCACACACGCCTGTGTAG
1 AGGCCACACACGCCCGTGTAG
* *
50983750 AGGCCACGCATGCCCGTGT-G
1 AGGCCACACACGCCCGTGTAG
**
50983770 AAGGGGACACACGCCCGTGT
1 -AGGCCACACACGCCCGTGT
50983790 GAGCAGCCCT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
20 1 0.03
21 31 0.97
ACGTcount: A:0.21, C:0.33, G:0.33, T:0.13
Consensus pattern (21 bp):
AGGCCACACACGCCCGTGTAG
Found at i:50998995 original size:17 final size:17
Alignment explanation
Indices: 50998973--50999014 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
50998963 ATTTTTATTT
*
50998973 TTTATTTTTTTCTTTAC
1 TTTATTTTTTGCTTTAC
* *
50998990 TTTATTTATTGCTTTAT
1 TTTATTTTTTGCTTTAC
50999007 TTTATTTT
1 TTTATTTT
50999015 ATTTTACTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.76
Consensus pattern (17 bp):
TTTATTTTTTGCTTTAC
Found at i:51000059 original size:16 final size:14
Alignment explanation
Indices: 51000038--51000075 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
51000028 CCTAAAGCAT
51000038 AAAAAAAAGAGAGAA
1 AAAAAAAAGA-AGAA
51000053 AAAAAAAAGAAGAA
1 AAAAAAAAGAAGAA
51000067 AAGAAAAAA
1 AA-AAAAAA
51000076 ATAATTTGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAAAAAAGAAGAA
Found at i:51005126 original size:40 final size:40
Alignment explanation
Indices: 51005067--51005170 Score: 95
Period size: 40 Copynumber: 2.6 Consensus size: 40
51005057 AATCATTAAT
* * * *
51005067 ATATCTAAGTAATTT-TCAAAATTTATAATGTTTTACCAAA
1 ATATTTAAG-AATTTATCAAAATTTATAAGGCTATACCAAA
* * *
51005107 ATATTTAAGAATTTATCAAATTTTCTAAGGCTATATCAAA
1 ATATTTAAGAATTTATCAAAATTTATAAGGCTATACCAAA
* *
51005147 ATATATAAAGATTTTAT-AAAATTT
1 ATAT-TTAAGAATTTATCAAAATTT
51005171 CTCCCTGATC
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
39 5 0.10
40 37 0.71
41 10 0.19
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.42
Consensus pattern (40 bp):
ATATTTAAGAATTTATCAAAATTTATAAGGCTATACCAAA
Found at i:51005409 original size:20 final size:18
Alignment explanation
Indices: 51005379--51005478 Score: 67
Period size: 20 Copynumber: 4.9 Consensus size: 18
51005369 TAGCATATCA
*
51005379 AAATATCTAAGTATTTACC
1 AAATTTCTAAG-ATTTACC
51005398 AGAATTTCTAAGATTATACC
1 A-AATTTCTAAGATT-TACC
51005418 AAAATTT-TCAAGACTTTACC
1 -AAATTTCT-AAGA-TTTACC
51005438 AATATTTCTAAGAGTTTTAACC
1 AA-ATTTCTAAGA--TTT-ACC
*
51005460 AAAATTTCGAAAGATTTAC
1 -AAATTTC-TAAGATTTAC
51005479 TTAGTTGACT
Statistics
Matches: 67, Mismatches: 3, Indels: 21
0.74 0.03 0.23
Matches are distributed among these distances:
19 7 0.10
20 36 0.54
21 10 0.15
22 8 0.12
23 6 0.09
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (18 bp):
AAATTTCTAAGATTTACC
Found at i:51005466 original size:22 final size:20
Alignment explanation
Indices: 51005377--51005467 Score: 87
Period size: 20 Copynumber: 4.5 Consensus size: 20
51005367 TTTAGCATAT
*
51005377 CAAAATATCTAAG-TATTTAC
1 CAAAATTTCTAAGAT-TTTAC
* *
51005397 CAGAATTTCTAAGATTATAC
1 CAAAATTTCTAAGATTTTAC
*
51005417 CAAAATTT-TCAAGACTTTAC
1 CAAAATTTCT-AAGATTTTAC
*
51005437 CAATATTTCTAAGAGTTTTAAC
1 CAAAATTTCTAAGA-TTTT-AC
51005459 CAAAATTTC
1 CAAAATTTC
51005468 GAAAGATTTA
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
19 1 0.02
20 41 0.72
21 5 0.09
22 10 0.18
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.36
Consensus pattern (20 bp):
CAAAATTTCTAAGATTTTAC
Found at i:51005647 original size:20 final size:18
Alignment explanation
Indices: 51005624--51005692 Score: 57
Period size: 20 Copynumber: 3.5 Consensus size: 18
51005614 GATTTGCCAG
51005624 TATTTCTAAGTGTTTATCAA
1 TATTTCTAAG-GTTTA-CAA
* *
51005644 TATTTCTACGCATTTACTAA
1 TATTTCTAAG-GTTTAC-AA
*
51005664 AATTTCTAAGGATTTAACAA
1 TATTTCTAAGG-TTT-ACAA
51005684 TATTTCTAA
1 TATTTCTAA
51005693 AGGTAGTTCA
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
19 1 0.03
20 36 0.92
21 2 0.05
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (18 bp):
TATTTCTAAGGTTTACAA
Found at i:51005673 original size:60 final size:60
Alignment explanation
Indices: 51005580--51005692 Score: 147
Period size: 60 Copynumber: 1.9 Consensus size: 60
51005570 TTATCAAAAT
** *
51005580 TCAATATTTCTAAAGATTTACCAAAACATCTAAGGATTTGCCAGTATTTCTAAGTGTTTA
1 TCAATATTTCTAAAGATTTACCAAAACATCTAAGGATTTAACAATATTTCTAAGTGTTTA
* * **
51005640 TCAATATTTCT-ACGCATTTACTAAAATTTCTAAGGATTTAACAATATTTCTAA
1 TCAATATTTCTAAAG-ATTTACCAAAACATCTAAGGATTTAACAATATTTCTAA
51005693 AGGTAGTTCA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
59 2 0.04
60 43 0.96
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (60 bp):
TCAATATTTCTAAAGATTTACCAAAACATCTAAGGATTTAACAATATTTCTAAGTGTTTA
Found at i:51005900 original size:40 final size:40
Alignment explanation
Indices: 51005807--51005900 Score: 100
Period size: 40 Copynumber: 2.4 Consensus size: 40
51005797 AGAACCTTAA
* * *
51005807 AAATGTTGATAAATCCATAGATGTTTTAGTGGAACTTCAG
1 AAATTTTGATAAATCCATAGATATTTTAGTAGAACTTCAG
* * * *
51005847 AAATTTTGGTAAATCCATAGATATTTTGGTATAACTTTAG
1 AAATTTTGATAAATCCATAGATATTTTAGTAGAACTTCAG
*
51005887 GAATTCTT-ATAAAT
1 AAATT-TTGATAAAT
51005901 TTTGATAAAT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
40 42 0.95
41 2 0.05
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (40 bp):
AAATTTTGATAAATCCATAGATATTTTAGTAGAACTTCAG
Found at i:51005920 original size:20 final size:20
Alignment explanation
Indices: 51005892--51005931 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
51005882 TTTAGGAATT
* *
51005892 CTTATAAATTTTGATAAATC
1 CTTAAAAATATTGATAAATC
*
51005912 CTTAAAAATATTGGTAAATC
1 CTTAAAAATATTGATAAATC
51005932 AGTAGAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.40
Consensus pattern (20 bp):
CTTAAAAATATTGATAAATC
Found at i:51006009 original size:20 final size:21
Alignment explanation
Indices: 51005985--51006033 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
51005975 GGACACCAAG
*
51005985 AAAATCTTTACAAATTTTGGT
1 AAAATCTTTACAAATTTTGAT
* * *
51006006 -AAATATTTAGATATTTTGAT
1 AAAATCTTTACAAATTTTGAT
51006026 AAAATCTT
1 AAAATCTT
51006034 AGTAAAATAC
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.41, C:0.06, G:0.08, T:0.45
Consensus pattern (21 bp):
AAAATCTTTACAAATTTTGAT
Found at i:51015629 original size:14 final size:13
Alignment explanation
Indices: 51015597--51015634 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
51015587 TTTCCAAAAC
51015597 ATAAATT-ATTTA
1 ATAAATTAATTTA
*
51015609 TTAAATTAATTTAA
1 ATAAATTAATTT-A
51015623 ATAAATTAATTT
1 ATAAATTAATTT
51015635 TCCAATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
ATAAATTAATTTA
Found at i:51015656 original size:17 final size:17
Alignment explanation
Indices: 51015608--51015653 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 17
51015598 TAAATTATTT
51015608 ATTAAATTAA-TTT--A
1 ATTAAATTAATTTTCCA
*
51015622 AATAAATTAATTTTCCA
1 ATTAAATTAATTTTCCA
51015639 ATTAAA-TAATTTTCC
1 ATTAAATTAATTTTCC
51015654 CAACTCAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 9 0.33
15 3 0.11
16 9 0.33
17 6 0.22
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.46
Consensus pattern (17 bp):
ATTAAATTAATTTTCCA
Found at i:51016868 original size:22 final size:22
Alignment explanation
Indices: 51016824--51016868 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
51016814 TTCCCGCAAC
* **
51016824 CTTGGATGTCACGACGCTGAAG
1 CTTGGATGTCACGACACCAAAG
*
51016846 CTTGGGTGTCACGACACCAAAG
1 CTTGGATGTCACGACACCAAAG
51016868 C
1 C
51016869 CTGATGGGTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.20
Consensus pattern (22 bp):
CTTGGATGTCACGACACCAAAG
Found at i:51018746 original size:30 final size:30
Alignment explanation
Indices: 51018697--51018759 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
51018687 ACTTAACAAG
51018697 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* * *
51018727 CAAATGTCTTTAAAGTAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
51018757 CAA
1 CAA
51018760 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:51022055 original size:98 final size:96
Alignment explanation
Indices: 51021877--51022056 Score: 272
Period size: 98 Copynumber: 1.9 Consensus size: 96
51021867 GCACCAAGTA
* * *
51021877 CAATTTTCGGCTCCCAATGCATTTTTTTACTTTGGAACACTGATGGCTGGCACCAGTGTATTTTT
1 CAATTTTCGGCTCCCAATGAATTTTTTTACTTTGGAACACTGATGGCTGGCACCAATATATTTTT
**
51021942 TATTAAAAATTTTTTTTTGGGTGCCGGAGTT
66 TATTAAAAAAATTTTTTTGGGTGCCGGAGTT
*
51021973 CAATTTTCGGCTCCCAATGAATTTTTTTTTACTTTGGAACACTGATGG-TCGGCATCAATATATT
1 CAATTTTCGGCTCCCAATGAA--TTTTTTTACTTTGGAACACTGATGGCT-GGCACCAATATATT
51022037 TTTTATTAAAAAAATTTTTT
63 TTTTATTAAAAAAATTTTTT
51022057 GGTACATGGC
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
96 20 0.27
97 1 0.01
98 54 0.72
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (96 bp):
CAATTTTCGGCTCCCAATGAATTTTTTTACTTTGGAACACTGATGGCTGGCACCAATATATTTTT
TATTAAAAAAATTTTTTTGGGTGCCGGAGTT
Found at i:51022115 original size:106 final size:97
Alignment explanation
Indices: 51021867--51022126 Score: 290
Period size: 106 Copynumber: 2.6 Consensus size: 97
51021857 GTAATGGTTG
51021867 GCACCAAGTACAATTTTCGGCTCCCAATGCATTTTTTTACTTTGGAACACTGATGGCTGGCACCA
1 GCACCAAGTACAATTTTCGGCTCCCAATGCATTTTTTTACTTTGGAACACTGATGGCTGGCACCA
* * * **
51021932 GTGTATTTTTTATTAAAAATTTTTTTTTGGGT
66 ATATATTTTTTATTAAAAATTTTTTTATGGCA
** * *
51021964 GC-CGGAGTTCAATTTTCGGCTCCCAATGAATTTTTTTTTACTTTGGAACACTGATGG-TCGGCA
1 GCACCAAGTACAATTTTCGGCTCCCAATGCA--TTTTTTTACTTTGGAACACTGATGGCT-GGCA
*
51022027 TCAATATATTTTTTATTAAAAAAATTTTTTGGTACATGGCCA
63 CCAATATATTTTTTATT--AAAAATTTTTT--T--ATGG-CA
* *
51022069 GCACCAAGTACAATTTTTGGCTCCCAATGCATCCTCTTTTACTTTGGAACACTGATGG
1 GCACCAAGTACAATTTTCGGCTCCCAATGCAT--TTTTTTACTTTGGAACACTGATGG
51022127 GCAAACCAGT
Statistics
Matches: 134, Mismatches: 16, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
96 24 0.18
97 3 0.02
98 43 0.32
100 11 0.08
102 1 0.01
104 4 0.03
105 2 0.01
106 46 0.34
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (97 bp):
GCACCAAGTACAATTTTCGGCTCCCAATGCATTTTTTTACTTTGGAACACTGATGGCTGGCACCA
ATATATTTTTTATTAAAAATTTTTTTATGGCA
Found at i:51022163 original size:106 final size:106
Alignment explanation
Indices: 51021973--51022163 Score: 222
Period size: 106 Copynumber: 1.8 Consensus size: 106
51021963 TGCCGGAGTT
** * * ** *
51021973 CAATTTTCGGCTCCCAATGAATTTTTTTTTACTTTGGAACACTGATGGTCGGCATCAATATATTT
1 CAATTTTCGGCTCCCAATGAATCCTCTTTTACTTTGGAACACTGATGGGCGAAACCAATATATTT
* ** **
51022038 TTTATTAAAAAAATTTTTTGGTACATGGCCAGCACCAAGTA
66 TTAAAAAAAAAAAAATTTTGGTACATGGCCAGCACCAAGTA
* * * *
51022079 CAATTTTTGGCTCCCAATGCATCCTCTTTTACTTTGGAACACTGATGGGC-AAACCAGTGTATTT
1 CAATTTTCGGCTCCCAATGAATCCTCTTTTACTTTGGAACACTGATGGGCGAAACCAATATATTT
51022143 TTAAAAAAAAAAAAAATTTTG
66 TT-AAAAAAAAAAAAATTTTG
51022164 AGTGCTGGCC
Statistics
Matches: 68, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
105 11 0.16
106 57 0.84
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (106 bp):
CAATTTTCGGCTCCCAATGAATCCTCTTTTACTTTGGAACACTGATGGGCGAAACCAATATATTT
TTAAAAAAAAAAAAATTTTGGTACATGGCCAGCACCAAGTA
Found at i:51025689 original size:36 final size:36
Alignment explanation
Indices: 51025642--51025713 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
51025632 AAAGGGGGAC
*
51025642 AAAAAAATCGAATAGAAAATAGAAAAATTTTATACA
1 AAAAAAATCGAATAGAAAATAGAAAAAGTTTATACA
51025678 AAAAAAATCGAATAGAAAATAGAAAAAGTTTATACA
1 AAAAAAATCGAATAGAAAATAGAAAAAGTTTATACA
51025714 GATTCAAAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.64, C:0.06, G:0.10, T:0.21
Consensus pattern (36 bp):
AAAAAAATCGAATAGAAAATAGAAAAAGTTTATACA
Found at i:51025768 original size:19 final size:20
Alignment explanation
Indices: 51025729--51025779 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 20
51025719 AAAAGGTGTT
51025729 TTTTTTTCTTCTACTCTTTTA
1 TTTTTTT-TTCTACTCTTTTA
*
51025750 TTTTTTTTTCTGCTC-TTTA
1 TTTTTTTTTCTACTCTTTTA
*
51025769 CTTTTTTTTCT
1 TTTTTTTTTCT
51025780 TTCTTGCATC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 14 0.50
20 7 0.25
21 7 0.25
ACGTcount: A:0.06, C:0.18, G:0.02, T:0.75
Consensus pattern (20 bp):
TTTTTTTTTCTACTCTTTTA
Found at i:51026655 original size:3 final size:3
Alignment explanation
Indices: 51026647--51026734 Score: 53
Period size: 3 Copynumber: 31.0 Consensus size: 3
51026637 TCTTTTAACC
* ** *
51026647 TTA TTA TTA TTA TTA TTA TTA TTA TT- TTG TT- TTA AAA TT- TTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
51026692 -TA TTA TTA TCA GTA TTA TAA AT- TTA TTA TGTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
51026735 AATTTCTTCA
Statistics
Matches: 65, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
2 11 0.17
3 51 0.78
4 3 0.05
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:51026759 original size:24 final size:24
Alignment explanation
Indices: 51026704--51026772 Score: 70
Period size: 23 Copynumber: 2.9 Consensus size: 24
51026694 TTATTATCAG
* * *
51026704 TATTATAAATTTATT-ATGTATTAT
1 TATT-TAAATTTCTTCATATATTAA
51026728 TATATTAAATTTCTTCATATATTAA
1 TAT-TTAAATTTCTTCATATATTAA
*
51026753 TATTT-AATTTCGTCATATAT
1 TATTTAAATTTCTTCATATAT
51026773 CATCTTATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
23 14 0.36
24 14 0.36
25 11 0.28
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.55
Consensus pattern (24 bp):
TATTTAAATTTCTTCATATATTAA
Found at i:51027051 original size:45 final size:45
Alignment explanation
Indices: 51026965--51027051 Score: 104
Period size: 45 Copynumber: 1.9 Consensus size: 45
51026955 ATGCACATAT
* * * * * *
51026965 ATTTTATAATTTATATATATACATATATTTTTGTTATATTTTATA
1 ATTTTAAAATGTATATATAAACACACATATTTGTTATATTTTATA
51027010 ATTTTAAAATGTATATATAAACACACATATTT-TTATAATTTT
1 ATTTTAAAATGTATATATAAACACACATATTTGTTAT-ATTTT
51027052 TTTATAGTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
44 4 0.11
45 31 0.89
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (45 bp):
ATTTTAAAATGTATATATAAACACACATATTTGTTATATTTTATA
Found at i:51028272 original size:27 final size:25
Alignment explanation
Indices: 51028242--51028475 Score: 117
Period size: 27 Copynumber: 9.6 Consensus size: 25
51028232 TGAGAAAAAA
51028242 TTAAATCTAAATGGAAAAAAAGATAGT
1 TTAAAT-TAAATGGAAAAAAAGATA-T
* *
51028269 TTAAATGAAATGAGAAAAAAA-ACA-
1 TTAAATTAAATG-GAAAAAAAGATAT
51028293 TTAAATTTAAATGGAAAAAAAG--A-
1 TTAAA-TTAAATGGAAAAAAAGATAT
*
51028316 -TAATTTAAATGGAAAAAAAGATAAT
1 TTAAATTAAATGGAAAAAAAGAT-AT
* *
51028341 TTAAATGAAAT-GAGAAAAA-A-A-
1 TTAAATTAAATGGAAAAAAAGATAT
*
51028362 -TAAATTAAAATGGAAAGAAAGATAAT
1 TTAAATT-AAATGGAAAAAAAGAT-AT
* * * * *
51028388 TTAAATGAAAAGAAAAAGAAATTAAAT
1 TTAAATTAAATGGAAAA-AAA-GATAT
*
51028415 TTAAATGAAAT-GAGAAAAAA-A-A-
1 TTAAATTAAATGGA-AAAAAAGATAT
*
51028437 TTAAATGAAA---AAAAAAAGATAAT
1 TTAAATTAAATGGAAAAAAAGAT-AT
*
51028460 TTAAATGAAATGGAAA
1 TTAAATTAAATGGAAA
51028476 TGAAAATGGA
Statistics
Matches: 164, Mismatches: 18, Indels: 51
0.70 0.08 0.22
Matches are distributed among these distances:
19 6 0.04
20 7 0.04
21 20 0.12
22 21 0.13
23 13 0.08
24 16 0.10
25 14 0.09
26 29 0.18
27 37 0.23
28 1 0.01
ACGTcount: A:0.63, C:0.01, G:0.13, T:0.23
Consensus pattern (25 bp):
TTAAATTAAATGGAAAAAAAGATAT
Found at i:51028311 original size:51 final size:47
Alignment explanation
Indices: 51028223--51028475 Score: 167
Period size: 47 Copynumber: 5.3 Consensus size: 47
51028213 TATATTCAAC
*
51028223 TAAATGAAATGAGAAAAAATTAAATCTAAATGGAAAAAAAGATAGTT
1 TAAATGAAATGAGAAAAAATTAAATCTAAATGGAAAAAAAGATAATT
*
51028270 TAAATGAAATGAGAAAAAAAACATTAAATTTAAATGGAAAAAAAGATAATT
1 TAAATGAAATGAG---AAAAA-ATTAAATCTAAATGGAAAAAAAGATAATT
* *
51028321 TAAATGGAAA--A-AAAGATAATTTAAAT-GAAATGAGAAAAAAATA-AATT
1 TAAAT-GAAATGAGAAA-A-AA-TTAAATCTAAATG-GAAAAAAAGATAATT
* * * *
51028368 AAAATGGAAA-GA-AAGATAATTTAAAT-GAAA-AGAAAAAGAA-ATTAAATT
1 TAAAT-GAAATGAGAA-A-AAATTAAATCTAAATGGAAAAA-AAGA-T-AATT
*
51028416 TAAATGAAATGAG-AAAAA--AAAT-TAAATGAAAAAAAAAAGATAATT
1 TAAATGAAATGAGAAAAAATTAAATCTAAATG--GAAAAAAAGATAATT
51028461 TAAATGAAATG-GAAA
1 TAAATGAAATGAGAAA
51028476 TGAAAATGGA
Statistics
Matches: 171, Mismatches: 13, Indels: 46
0.74 0.06 0.20
Matches are distributed among these distances:
44 8 0.05
45 24 0.14
46 10 0.06
47 54 0.32
48 31 0.18
49 2 0.01
50 6 0.04
51 32 0.19
52 4 0.02
ACGTcount: A:0.64, C:0.01, G:0.13, T:0.22
Consensus pattern (47 bp):
TAAATGAAATGAGAAAAAATTAAATCTAAATGGAAAAAAAGATAATT
Found at i:51028325 original size:72 final size:70
Alignment explanation
Indices: 51028249--51028466 Score: 277
Period size: 72 Copynumber: 3.1 Consensus size: 70
51028239 AAATTAAATC
* *
51028249 TAAATGGAAAAAAAGATAGTTTAAATGAAATGAGAAAAAAAACATTAAATTTAAATGGAAAAAAA
1 TAAATGGAAAAAAAGATAATTTAAATGAAATGAG-AAAAAAA-ATTAAATTAAAATGGAAAAAAA
51028314 GATAATT
64 GATAATT
*
51028321 TAAATGGAAAAAAAGATAATTTAAATGAAATGAG-AAAAAAA-TAAATTAAAATGGAAAGAAAGA
1 TAAATGGAAAAAAAGATAATTTAAATGAAATGAGAAAAAAAATTAAATTAAAATGGAAAAAAAGA
51028384 TAATT
66 TAATT
* *
51028389 TAAATGAAAAGAAAAAGAAATTAAATTTAAATGAAATGAGAAAAAAAATTAAA-TGAAA---AAA
1 TAAATG-GAA-AAAAAG--A-T-AATTTAAATGAAATGAGAAAAAAAATTAAATTAAAATGGAAA
51028450 AAAAGATAATT
60 AAAAGATAATT
51028461 TAAATG
1 TAAATG
51028467 AAATGGAAAT
Statistics
Matches: 132, Mismatches: 6, Indels: 16
0.86 0.04 0.10
Matches are distributed among these distances:
68 31 0.23
69 3 0.02
70 12 0.09
72 53 0.40
73 1 0.01
74 17 0.13
75 11 0.08
76 4 0.03
ACGTcount: A:0.64, C:0.00, G:0.13, T:0.22
Consensus pattern (70 bp):
TAAATGGAAAAAAAGATAATTTAAATGAAATGAGAAAAAAAATTAAATTAAAATGGAAAAAAAGA
TAATT
Found at i:51028366 original size:119 final size:117
Alignment explanation
Indices: 51028223--51028475 Score: 336
Period size: 119 Copynumber: 2.1 Consensus size: 117
51028213 TATATTCAAC
* *
51028223 TAAATGAAATGAGAAAAAATTAAATCT-AAATGGAAAAAAAGATAGTTTAAATGAAATGAGAAAA
1 TAAATGAAATGAGAAAAAAATAAAT-TAAAATGGAAAAAAAGATAATTTAAATGAAA--AGAAAA
* * *
51028287 AAAACATTAAATTTAAATGGAAA-A-AAAGATAATTTAAATG-GAAAAAAAGATAATT
63 AAAA-ATTAAATTTAAAT-GAAAGAGAAA-AAAAATTAAATGAAAAAAAAAGATAATT
* *
51028342 TAAATGAAATGAGAAAAAAATAAATTAAAATGGAAAGAAAGATAATTTAAATGAAAAGAAAAAGA
1 TAAATGAAATGAGAAAAAAATAAATTAAAATGGAAAAAAAGATAATTTAAATGAAAAGAAAAAAA
51028407 AATTAAATTTAAATGAAATGAGAAAAAAAATTAAATGAAAAAAAAAAGATAATT
66 AATTAAATTTAAATGAAA-GAGAAAAAAAATTAAATG-AAAAAAAAAGATAATT
51028461 TAAATGAAATG-GAAA
1 TAAATGAAATGAGAAA
51028476 TGAAAATGGA
Statistics
Matches: 121, Mismatches: 7, Indels: 13
0.86 0.05 0.09
Matches are distributed among these distances:
115 4 0.03
116 13 0.11
117 20 0.17
118 8 0.07
119 76 0.63
ACGTcount: A:0.64, C:0.01, G:0.13, T:0.22
Consensus pattern (117 bp):
TAAATGAAATGAGAAAAAAATAAATTAAAATGGAAAAAAAGATAATTTAAATGAAAAGAAAAAAA
AATTAAATTTAAATGAAAGAGAAAAAAAATTAAATGAAAAAAAAAGATAATT
Found at i:51028399 original size:21 final size:21
Alignment explanation
Indices: 51028296--51028469 Score: 120
Period size: 21 Copynumber: 7.6 Consensus size: 21
51028286 AAAAACATTA
51028296 AATTTAAATGGAAAA-AAAGAT
1 AATTTAAAT-GAAAAGAAAGAT
51028317 AATTTAAATGGAAAA-AAAGAT
1 AATTTAAAT-GAAAAGAAAGAT
*
51028338 AATTTAAATGAAATGAGAAAAAAAT
1 AATTTAAATGAAA--AG--AAAGAT
* *
51028363 AAATTAAAATGGAAAGAAAGAT
1 -AATTTAAATGAAAAGAAAGAT
51028385 AATTTAAATGAAAAGAAAAAGAAATT
1 AATTTAAATGAAAAG--AAAG--A-T
*
51028411 AAATTTAAATGAAATGAGAAA-AA
1 -AATTTAAATGAAA--AGAAAGAT
* *
51028434 AAATTAAATGAAAAAAAAAAGAT
1 AATTTAAATG--AAAAGAAAGAT
51028457 AATTTAAATGAAA
1 AATTTAAATGAAA
51028470 TGGAAATGAA
Statistics
Matches: 125, Mismatches: 11, Indels: 34
0.74 0.06 0.20
Matches are distributed among these distances:
20 4 0.03
21 46 0.37
22 19 0.15
23 14 0.11
24 6 0.05
25 6 0.05
26 12 0.10
27 16 0.13
29 2 0.02
ACGTcount: A:0.65, C:0.00, G:0.13, T:0.22
Consensus pattern (21 bp):
AATTTAAATGAAAAGAAAGAT
Found at i:51028442 original size:17 final size:16
Alignment explanation
Indices: 51028390--51028452 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
51028380 AAGATAATTT
51028390 AAATGAAAAGAAAAA-G
1 AAATGAAAA-AAAAATG
* ***
51028406 AAATTAAATTTAAATG
1 AAATGAAAAAAAAATG
*
51028422 AAATGAGAAAAAAAATT
1 AAATGA-AAAAAAAATG
51028439 AAATGAAAAAAAAA
1 AAATGAAAAAAAAA
51028453 AGATAATTTA
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
15 3 0.08
16 21 0.58
17 12 0.33
ACGTcount: A:0.71, C:0.00, G:0.11, T:0.17
Consensus pattern (16 bp):
AAATGAAAAAAAAATG
Found at i:51028453 original size:17 final size:17
Alignment explanation
Indices: 51028417--51028453 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
51028407 AATTAAATTT
*
51028417 AAATGAAATGAGAAAAA
1 AAATGAAATGAAAAAAA
*
51028434 AAATTAAATGAAAAAAA
1 AAATGAAATGAAAAAAA
51028451 AAA
1 AAA
51028454 GATAATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.14
Consensus pattern (17 bp):
AAATGAAATGAAAAAAA
Found at i:51028467 original size:72 final size:72
Alignment explanation
Indices: 51028268--51028503 Score: 240
Period size: 72 Copynumber: 3.2 Consensus size: 72
51028258 AAAAAGATAG
*
51028268 TTTAAATGAAATGAGAAAAAAAACATTAAATTTAAATGGAAAAAAAGATAATTTAAATG-GAA-A
1 TTTAAATGAAATGAG-AAAAAAA-ATTAAA-TTAAA---AAAAAAAGATAATTTAAATGAAAAGA
51028331 AAAAG--A-T-AA
60 AAAAGAAATTAAA
51028340 TTTAAATGAAATGAG-AAAAAAA-TAAATTAAAATGGAAAGAAAGATAATTTAAATGAAAAGAAA
1 TTTAAATGAAATGAGAAAAAAAATTAAATTAAAA---AAA-AAAGATAATTTAAATGAAAAGAAA
51028403 AAGAAATTAAA
62 AAGAAATTAAA
* * * *
51028414 TTTAAATGAAATGAGAAAAAAAATTAAATGAAAAAAAAAAGATAATTTAAATGAAATGGAAATGA
1 TTTAAATGAAATGAGAAAAAAAATTAAATTAAAAAAAAAAGATAATTTAAATGAAAAGAAAAAG-
*
51028479 AAATGGAAA
65 AAAT-TAAA
51028488 -TTAAATGAAATG-GAAA
1 TTTAAATGAAATGAGAAA
51028504 TACAAATGGA
Statistics
Matches: 144, Mismatches: 6, Indels: 28
0.81 0.03 0.16
Matches are distributed among these distances:
64 1 0.01
67 8 0.06
68 20 0.14
69 3 0.02
70 12 0.08
72 44 0.31
73 20 0.14
74 20 0.14
75 7 0.05
76 9 0.06
ACGTcount: A:0.63, C:0.00, G:0.14, T:0.22
Consensus pattern (72 bp):
TTTAAATGAAATGAGAAAAAAAATTAAATTAAAAAAAAAAGATAATTTAAATGAAAAGAAAAAGA
AATTAAA
Found at i:51028470 original size:5 final size:5
Alignment explanation
Indices: 51028462--51028538 Score: 66
Period size: 5 Copynumber: 14.6 Consensus size: 5
51028452 AAGATAATTT
* *
51028462 AAATG AAATGG AAATG AAAATGG AAATT AAATG AAATGG AAATAC AAATG
1 AAATG AAAT-G AAATG -AAAT-G AAATG AAATG AAAT-G AAAT-G AAATG
* *
51028512 GAATG AAATG GAA-G AAATG AAATG AAA
1 AAATG AAATG AAATG AAATG AAATG AAA
51028539 AAAAGAAGAT
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
4 3 0.05
5 32 0.55
6 22 0.38
7 1 0.02
ACGTcount: A:0.58, C:0.01, G:0.22, T:0.18
Consensus pattern (5 bp):
AAATG
Found at i:51028477 original size:6 final size:6
Alignment explanation
Indices: 51028462--51028524 Score: 55
Period size: 6 Copynumber: 11.3 Consensus size: 6
51028452 AAGATAATTT
* * **
51028462 AAAT-G AAATGG AAATGA AAATGG AAAT-T AAAT-G AAATGG AAATAC
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG
51028507 AAATGG -AAT-G AAATGG AA
1 AAATGG AAATGG AAATGG AA
51028525 GAAATGAAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 7
0.75 0.13 0.11
Matches are distributed among these distances:
4 1 0.02
5 18 0.39
6 27 0.59
ACGTcount: A:0.57, C:0.02, G:0.22, T:0.19
Consensus pattern (6 bp):
AAATGG
Found at i:51028481 original size:28 final size:27
Alignment explanation
Indices: 51028390--51028504 Score: 84
Period size: 28 Copynumber: 4.4 Consensus size: 27
51028380 AAGATAATTT
* * *
51028390 AAAT-GAAAAGAAAAAGAAATTAAATTT
1 AAATGGAAATGAAAAGGAAATTAAA-TG
**
51028417 AAAT-GAAATGAGAAAAAAAATTAAATG
1 AAATGGAAATGA-AAAGGAAATTAAATG
51028444 AAA---AAA--AAAA-GATAATTTAAATG
1 AAATGGAAATGAAAAGGA-AA-TTAAATG
51028467 AAATGGAAATGAAAATGGAAATTAAATG
1 AAATGGAAATGAAAA-GGAAATTAAATG
51028495 AAATGGAAAT
1 AAATGGAAAT
51028505 ACAAATGGAA
Statistics
Matches: 74, Mismatches: 4, Indels: 19
0.76 0.04 0.20
Matches are distributed among these distances:
21 1 0.01
22 5 0.07
23 11 0.15
25 3 0.04
26 3 0.04
27 14 0.19
28 33 0.45
29 2 0.03
30 2 0.03
ACGTcount: A:0.64, C:0.00, G:0.15, T:0.21
Consensus pattern (27 bp):
AAATGGAAATGAAAAGGAAATTAAATG
Found at i:51028500 original size:16 final size:17
Alignment explanation
Indices: 51028473--51028504 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
51028463 AATGAAATGG
51028473 AAATGAAAATGGAAATT
1 AAATGAAAATGGAAATT
51028490 AAATG-AAATGGAAAT
1 AAATGAAAATGGAAAT
51028505 ACAAATGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.59, C:0.00, G:0.19, T:0.22
Consensus pattern (17 bp):
AAATGAAAATGGAAATT
Found at i:51028504 original size:22 final size:22
Alignment explanation
Indices: 51028462--51028524 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
51028452 AAGATAATTT
* **
51028462 AAATGAAATGGAAATGAAAATGG
1 AAATGAAAT-GAAATGGAAATAC
*
51028485 AAATTAAATGAAATGGAAATAC
1 AAATGAAATGAAATGGAAATAC
*
51028507 AAATGGAATGAAATGGAA
1 AAATGAAATGAAATGGAA
51028525 GAAATGAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
22 26 0.76
23 8 0.24
ACGTcount: A:0.57, C:0.02, G:0.22, T:0.19
Consensus pattern (22 bp):
AAATGAAATGAAATGGAAATAC
Found at i:51028510 original size:17 final size:16
Alignment explanation
Indices: 51028473--51028520 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
51028463 AATGAAATGG
*
51028473 AAATGAAAATGGAAATT
1 AAATG-AAATGGAAATC
51028490 AAATGAAATGGAAATAC
1 AAATGAAATGGAAAT-C
*
51028507 AAATGGAAT-GAAAT
1 AAATGAAATGGAAAT
51028521 GGAAGAAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 15 0.54
17 13 0.46
ACGTcount: A:0.58, C:0.02, G:0.19, T:0.21
Consensus pattern (16 bp):
AAATGAAATGGAAATC
Found at i:51028510 original size:28 final size:28
Alignment explanation
Indices: 51028460--51028514 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
51028450 AAAAGATAAT
51028460 TTAAATGAAATGGAAATGAAAATGGAAA
1 TTAAATGAAATGGAAATGAAAATGGAAA
51028488 TTAAATGAAATGGAAAT-ACAAATGGAA
1 TTAAATGAAATGGAAATGA-AAATGGAA
51028515 TGAAATGGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 1 0.04
28 25 0.96
ACGTcount: A:0.56, C:0.02, G:0.20, T:0.22
Consensus pattern (28 bp):
TTAAATGAAATGGAAATGAAAATGGAAA
Found at i:51028998 original size:21 final size:22
Alignment explanation
Indices: 51028964--51029012 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
51028954 AAAAACGTAA
*
51028964 ATTAAAATGGAAAGAAAGATAAT
1 ATTAAAATGAAAAGAAA-ATAAT
*
51028987 -TTAAAA-GAAAAGAGAATAAT
1 ATTAAAATGAAAAGAAAATAAT
51029007 ATTAAA
1 ATTAAA
51029013 TTTAAATGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 5 0.22
21 12 0.52
22 6 0.26
ACGTcount: A:0.63, C:0.00, G:0.14, T:0.22
Consensus pattern (22 bp):
ATTAAAATGAAAAGAAAATAAT
Found at i:51029063 original size:47 final size:45
Alignment explanation
Indices: 51029011--51029213 Score: 273
Period size: 47 Copynumber: 4.4 Consensus size: 45
51029001 AATAATATTA
* *
51029011 AATTTAAATGAAATAAGAAAAAAATATATTAAAATGGAAAGAAAGAT
1 AATTTAAATGAAATGAGAAAAAAATAAATTAAAATGGAAA-AAA-AT
51029058 AATTTAAATGAAATGAGAAAAAAATAAAATT-AAATGGAAAAAAAAT
1 AATTTAAATGAAATGAGAAAAAAAT-AAATTAAAATGG-AAAAAAAT
* *
51029104 AATTTAAATGAAATGAGAAAAAAATTAATTAAAATGGGAAGAAATAT
1 AATTTAAATGAAATGAGAAAAAAATAAATTAAAAT-GGAA-AAAAAT
*
51029151 AATTTAAATGAAATGAGAAAAAAACTAAATTTAAATGGGAAAAAAAT
1 AATTTAAATGAAATGAGAAAAAAA-TAAATTAAAAT-GGAAAAAAAT
*
51029198 AATTTAAATAAAATGA
1 AATTTAAATGAAATGA
51029214 AAATGGAAAT
Statistics
Matches: 142, Mismatches: 8, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
45 4 0.03
46 33 0.23
47 84 0.59
48 21 0.15
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.24
Consensus pattern (45 bp):
AATTTAAATGAAATGAGAAAAAAATAAATTAAAATGGAAAAAAAT
Found at i:51029087 original size:21 final size:21
Alignment explanation
Indices: 51029063--51029199 Score: 87
Period size: 21 Copynumber: 6.0 Consensus size: 21
51029053 AAGATAATTT
51029063 AAATGAAATGAGAAAAAAATA
1 AAATGAAATGAGAAAAAAATA
*
51029084 AAATTAAATG-GAAAAAAAATAA
1 AAATGAAATGAG-AAAAAAAT-A
*
51029106 TTTAAATGAAATGAGAAAAAAATT
1 ---AAATGAAATGAGAAAAAAATA
* * * *
51029130 AATTAAAATGGGAAGAAATATAATTT
1 AAATGAAAT--G-AGAAA-A-AAATA
51029156 AAATGAAATGAGAAAAAAACTA
1 AAATGAAATGAGAAAAAAA-TA
* * *
51029178 AATTTAAATGGGAAAAAAATA
1 AAATGAAATGAGAAAAAAATA
51029199 A
1 A
51029200 TTTAAATAAA
Statistics
Matches: 91, Mismatches: 13, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
20 1 0.01
21 29 0.32
22 19 0.21
23 6 0.07
24 6 0.07
25 18 0.20
26 12 0.13
ACGTcount: A:0.64, C:0.01, G:0.13, T:0.22
Consensus pattern (21 bp):
AAATGAAATGAGAAAAAAATA
Found at i:51029123 original size:93 final size:94
Alignment explanation
Indices: 51029011--51029213 Score: 329
Period size: 93 Copynumber: 2.2 Consensus size: 94
51029001 AATAATATTA
*
51029011 AATTTAAATGAAATAAGAAAAAAA-TATATTAAAATGGAAAGAAAGATAATTTAAATGAAATGAG
1 AATTTAAATGAAATGAGAAAAAAATTA-ATTAAAATGGAAAGAAAGATAATTTAAATGAAATGAG
51029075 AAAAAAA-TAAAATTAAATGGAAAAAAAAT
65 AAAAAAACTAAAATTAAATGGAAAAAAAAT
* *
51029104 AATTTAAATGAAATGAGAAAAAAATTAATTAAAATGGGAAGAAATATAATTTAAATGAAATGAGA
1 AATTTAAATGAAATGAGAAAAAAATTAATTAAAATGGAAAGAAAGATAATTTAAATGAAATGAGA
* *
51029169 AAAAAACTAAATTTAAATGGGAAAAAAAT
66 AAAAAACTAAAATTAAATGGAAAAAAAAT
*
51029198 AATTTAAATAAAATGA
1 AATTTAAATGAAATGA
51029214 AAATGGAAAT
Statistics
Matches: 102, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
93 65 0.64
94 37 0.36
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.24
Consensus pattern (94 bp):
AATTTAAATGAAATGAGAAAAAAATTAATTAAAATGGAAAGAAAGATAATTTAAATGAAATGAGA
AAAAAACTAAAATTAAATGGAAAAAAAAT
Found at i:51029223 original size:17 final size:16
Alignment explanation
Indices: 51029203--51029302 Score: 73
Period size: 17 Copynumber: 6.2 Consensus size: 16
51029193 AAAATAATTT
51029203 AAATAAAATGAAAATGG
1 AAATAAAATG-AAATGG
51029220 AAATGAAAATGAAAT-G
1 AAAT-AAAATGAAATGG
** * *
51029236 AAACGGAAATACAAATAG
1 AAA-TAAAAT-GAAATGG
* *
51029254 -AATGAAATGGAA--G
1 AAATAAAATGAAATGG
51029267 AAATAAAATGAAATGG
1 AAATAAAATGAAATGG
51029283 AAATAAAAATGAAATGG
1 AAAT-AAAATGAAATGG
51029300 AAA
1 AAA
51029303 AAAGAAAGAA
Statistics
Matches: 67, Mismatches: 8, Indels: 16
0.74 0.09 0.18
Matches are distributed among these distances:
13 1 0.01
14 10 0.15
15 2 0.03
16 18 0.27
17 29 0.43
18 7 0.10
ACGTcount: A:0.63, C:0.02, G:0.19, T:0.16
Consensus pattern (16 bp):
AAATAAAATGAAATGG
Found at i:51029276 original size:19 final size:18
Alignment explanation
Indices: 51029248--51029304 Score: 80
Period size: 19 Copynumber: 3.2 Consensus size: 18
51029238 ACGGAAATAC
*
51029248 AAATAGAATGAAATGGAA
1 AAATAAAATGAAATGGAA
51029266 GAAATAAAATGAAATGGAA
1 -AAATAAAATGAAATGGAA
*
51029285 ATA-AAAATGAAATGGAA
1 AAATAAAATGAAATGGAA
51029302 AAA
1 AAA
51029305 AGAAAGAAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
17 16 0.46
18 2 0.06
19 17 0.49
ACGTcount: A:0.65, C:0.00, G:0.19, T:0.16
Consensus pattern (18 bp):
AAATAAAATGAAATGGAA
Found at i:51029285 original size:41 final size:45
Alignment explanation
Indices: 51029203--51029303 Score: 120
Period size: 41 Copynumber: 2.3 Consensus size: 45
51029193 AAAATAATTT
* *
51029203 AAATAAAATGAAAATGGAAATGAAAATGAAATGAAACGGAAATAC
1 AAATAAAATGAAAATGGAAATGAAAATAAAATGAAACGGAAATAA
* *
51029248 AAATAGAATG-AAATGG-AA-G-AAATAAAATGAAATGGAAATAA
1 AAATAAAATGAAAATGGAAATGAAAATAAAATGAAACGGAAATAA
*
51029289 AAATGAAATGGAAAA
1 AAATAAAAT-GAAAA
51029304 AAGAAAGAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
41 26 0.54
42 2 0.04
43 5 0.10
44 6 0.12
45 9 0.19
ACGTcount: A:0.63, C:0.02, G:0.19, T:0.16
Consensus pattern (45 bp):
AAATAAAATGAAAATGGAAATGAAAATAAAATGAAACGGAAATAA
Found at i:51029302 original size:6 final size:5
Alignment explanation
Indices: 51029203--51029298 Score: 52
Period size: 5 Copynumber: 18.0 Consensus size: 5
51029193 AAAATAATTT
* * *
51029203 AAATA AAATG AAAATGG AAATG AAAATG AAATG AAACGG AAATAC AAAT-
1 AAATG AAATG -AAAT-G AAATG -AAATG AAATG AAA-TG AAAT-G AAATG
* * *
51029252 AGAATG AAATG GAA-G AAATA AAATG AAATGG AAATAA AAATG AAATG
1 A-AATG AAATG AAATG AAATG AAATG AAAT-G AAAT-G AAATG AAATG
51029299 GAAAAAAGAA
Statistics
Matches: 71, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
4 4 0.06
5 35 0.49
6 31 0.44
7 1 0.01
ACGTcount: A:0.62, C:0.02, G:0.19, T:0.17
Consensus pattern (5 bp):
AAATG
Found at i:51029313 original size:17 final size:16
Alignment explanation
Indices: 51029257--51029313 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 16
51029247 CAAATAGAAT
51029257 GAAATGGAAGAAATAAAA
1 GAAATGGAA-AAA-AAAA
*
51029275 TGAAATGGAAATAAAAAT
1 -GAAATGGAAA-AAAAAA
51029293 GAAATGGAAAAAAGAAA
1 GAAATGGAAAAAA-AAA
51029310 GAAA
1 GAAA
51029314 GATGAAAGGA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
16 3 0.09
17 16 0.47
18 4 0.12
19 11 0.32
ACGTcount: A:0.67, C:0.00, G:0.21, T:0.12
Consensus pattern (16 bp):
GAAATGGAAAAAAAAA
Found at i:51029394 original size:29 final size:29
Alignment explanation
Indices: 51029331--51029396 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
51029321 GGACATTGCG
*
51029331 GCAGGCCTGGGAATAAGTTGTCAGCACAA
1 GCAGGCCTGGGAATAAGTGGTCAGCACAA
* *
51029360 GTAGGCCTGGGAATCAA-TGGTCGGCACCAA
1 GCAGGCCTGGGAAT-AAGTGGTCAGCA-CAA
51029390 -CAGGCCT
1 GCAGGCCT
51029397 AGTACCTAGG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
29 26 0.84
30 5 0.16
ACGTcount: A:0.27, C:0.24, G:0.32, T:0.17
Consensus pattern (29 bp):
GCAGGCCTGGGAATAAGTGGTCAGCACAA
Found at i:51029766 original size:19 final size:19
Alignment explanation
Indices: 51029739--51029777 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
51029729 TAAATGTTAA
51029739 ATGAATATGAAATGAAATG
1 ATGAATATGAAATGAAATG
* *
51029758 ATGATTATGAAATGGAATG
1 ATGAATATGAAATGAAATG
51029777 A
1 A
51029778 AAGTTTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.23, T:0.28
Consensus pattern (19 bp):
ATGAATATGAAATGAAATG
Found at i:51029826 original size:18 final size:18
Alignment explanation
Indices: 51029805--51029921 Score: 71
Period size: 18 Copynumber: 6.3 Consensus size: 18
51029795 AATTATAAAT
*
51029805 TGAAATGAAAACAAAAAC
1 TGAAATGAAAAAAAAAAC
*
51029823 TGAAATGAAAAAAAAAAT
1 TGAAATGAAAAAAAAAAC
51029841 TGAAATGAGAAATAATTAAATA-
1 TGAAATGA-AAA-AA--AAA-AC
51029863 T-AAATGGAAAAAAATTAAA-
1 TGAAAT-GAAAAAAA--AAAC
* ***
51029882 TGAAATGGAAATGTAAA-
1 TGAAATGAAAAAAAAAAC
*
51029899 TGAAATGAAAAAAAAAAT
1 TGAAATGAAAAAAAAAAC
51029917 TGAAA
1 TGAAA
51029922 GGGGTATTAT
Statistics
Matches: 79, Mismatches: 10, Indels: 20
0.72 0.09 0.18
Matches are distributed among these distances:
17 16 0.20
18 30 0.38
19 9 0.11
20 10 0.13
21 7 0.09
22 6 0.08
23 1 0.01
ACGTcount: A:0.65, C:0.02, G:0.14, T:0.20
Consensus pattern (18 bp):
TGAAATGAAAAAAAAAAC
Found at i:51029867 original size:21 final size:21
Alignment explanation
Indices: 51029854--51029892 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
51029844 AATGAGAAAT
51029854 AATTAAATATAAATGGAAAAA
1 AATTAAATATAAATGGAAAAA
*
51029875 AATTAAAT-GAAATGGAAA
1 AATTAAATATAAATGGAAA
51029893 TGTAAATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.64, C:0.00, G:0.13, T:0.23
Consensus pattern (21 bp):
AATTAAATATAAATGGAAAAA
Found at i:51029900 original size:17 final size:16
Alignment explanation
Indices: 51029874--51029905 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
51029864 AAATGGAAAA
51029874 AAATTAAATGAAATGG
1 AAATTAAATGAAATGG
51029890 AAATGTAAATGAAATG
1 AAAT-TAAATGAAATG
51029906 AAAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.56, C:0.00, G:0.19, T:0.25
Consensus pattern (16 bp):
AAATTAAATGAAATGG
Found at i:51038078 original size:38 final size:39
Alignment explanation
Indices: 51038034--51038118 Score: 136
Period size: 38 Copynumber: 2.2 Consensus size: 39
51038024 AAAATTTATA
*
51038034 TTTAATACAATAAAATATTTATTATATTTAT-TTGTGTT
1 TTTAATACAATAAAATATTTATTATATTTATATAGTGTT
*
51038072 TTTAATATAATAAAATATTTATTATATTTATGATAGTGTT
1 TTTAATACAATAAAATATTTATTATATTTAT-ATAGTGTT
51038112 TTTAATA
1 TTTAATA
51038119 TAAATACTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
38 30 0.70
40 13 0.30
ACGTcount: A:0.39, C:0.01, G:0.06, T:0.54
Consensus pattern (39 bp):
TTTAATACAATAAAATATTTATTATATTTATATAGTGTT
Found at i:51064175 original size:15 final size:17
Alignment explanation
Indices: 51064155--51064195 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
51064145 TGGTTGTGAT
51064155 TATATA-ATGTGCG-AA
1 TATATATATGTGCGTAA
*
51064170 TATATATATGTGTGTAA
1 TATATATATGTGCGTAA
51064187 TATATATAT
1 TATATATAT
51064196 ATATATATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 6 0.26
16 6 0.26
17 11 0.48
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.44
Consensus pattern (17 bp):
TATATATATGTGCGTAA
Found at i:51064493 original size:41 final size:41
Alignment explanation
Indices: 51064438--51064598 Score: 268
Period size: 41 Copynumber: 3.9 Consensus size: 41
51064428 ATTGGTGAAT
* *
51064438 TGAATCAGGTTATAAACCTAGAAGGCTAAGTGCCGGTGATC
1 TGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTGATC
* *
51064479 TGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATA
1 TGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTGATC
*
51064520 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATC
1 TGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTGATC
*
51064561 TGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTG
1 TGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTG
51064599 TTCCGAATAT
Statistics
Matches: 111, Mismatches: 9, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
41 111 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (41 bp):
TGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTGATC
Found at i:51064568 original size:82 final size:82
Alignment explanation
Indices: 51064438--51064598 Score: 313
Period size: 82 Copynumber: 2.0 Consensus size: 82
51064428 ATTGGTGAAT
51064438 TGAATCAGGTTATAAACCTAGAAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
1 TGAATCAGGTTATAAACCTAGAAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
51064503 GCTAAGTGCCGGTGATA
66 GCTAAGTGCCGGTGATA
*
51064520 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
1 TGAATCAGGTTATAAACCTAGAAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
51064585 GCTAAGTGCCGGTG
66 GCTAAGTGCCGGTG
51064599 TTCCGAATAT
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 78 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (82 bp):
TGAATCAGGTTATAAACCTAGAAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
GCTAAGTGCCGGTGATA
Found at i:51064838 original size:31 final size:34
Alignment explanation
Indices: 51064795--51064892 Score: 103
Period size: 37 Copynumber: 2.9 Consensus size: 34
51064785 TTATGTGTGC
* *
51064795 ATATGTAGGCATTCGGCATAGGTGGATATA-TAT
1 ATATGTATGCATTTGGCATAGGTGGATATAGTAT
* *
51064828 -T-TGTATGCATTTGGCATAGTTAGATATAAGTGTAT
1 ATATGTATGCATTTGGCATAGGTGGATAT-A--GTAT
*
51064863 ATATGTATGCATTTGGCATAGGTGGGTATA
1 ATATGTATGCATTTGGCATAGGTGGATATA
51064893 AGTGAATATG
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
31 22 0.42
32 2 0.04
35 3 0.06
36 2 0.04
37 23 0.44
ACGTcount: A:0.29, C:0.07, G:0.27, T:0.38
Consensus pattern (34 bp):
ATATGTATGCATTTGGCATAGGTGGATATAGTAT
Found at i:51064864 original size:37 final size:37
Alignment explanation
Indices: 51064823--51064901 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
51064813 TAGGTGGATA
* *
51064823 TATATTTGTATGCATTTGGCATAGTTAGATATAAGTG
1 TATATATGTATGCATTTGGCATAGGTAGATATAAGTG
* *
51064860 TATATATGTATGCATTTGGCATAGGTGGGTATAAGTG
1 TATATATGTATGCATTTGGCATAGGTAGATATAAGTG
*
51064897 AATAT
1 TATAT
51064902 GTGCATTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.30, C:0.05, G:0.24, T:0.41
Consensus pattern (37 bp):
TATATATGTATGCATTTGGCATAGGTAGATATAAGTG
Found at i:51065708 original size:50 final size:50
Alignment explanation
Indices: 51065567--51065713 Score: 189
Period size: 45 Copynumber: 3.0 Consensus size: 50
51065557 GGGTTAGGGG
51065567 TGTTACAACTGCAAC-ACTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATC
1 TGTT-CAACTGCAACGA-TAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATC
* * * *
51065618 TTTTTAACTGC--CG---GGGAAGCAAGATCCGCTGTTGTAGCTTCAATC
1 TGTTCAACTGCAACGATAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATC
*
51065663 TGTTCCACTGCAACGATAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATC
1 TGTTCAACTGCAACGATAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATC
51065713 T
1 T
51065714 TTTTAATTGC
Statistics
Matches: 81, Mismatches: 9, Indels: 13
0.79 0.09 0.13
Matches are distributed among these distances:
45 38 0.47
47 2 0.02
48 1 0.01
50 37 0.46
51 3 0.04
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (50 bp):
TGTTCAACTGCAACGATAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATC
Found at i:51067029 original size:17 final size:16
Alignment explanation
Indices: 51067009--51067040 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
51066999 CTTTTTTTCA
51067009 TTTTTTCATTATTCATT
1 TTTTTTCATT-TTCATT
51067026 TTTTTTCATTTTCAT
1 TTTTTTCATTTTCAT
51067041 CATCATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTTTCATTTTCATT
Found at i:51067037 original size:23 final size:23
Alignment explanation
Indices: 51067000--51067052 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
51066990 TTACTTTTTC
*
51067000 TTTTTTTCATTTTTTCATTATTCAT
1 TTTTTTTCA-TTTTTCATCA-TCAT
51067025 TTTTTTTCA-TTTTCATCATCAT
1 TTTTTTTCATTTTTCATCATCAT
51067047 TTTTTT
1 TTTTTT
51067053 GACCCAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 10 0.37
23 8 0.30
25 9 0.33
ACGTcount: A:0.15, C:0.13, G:0.00, T:0.72
Consensus pattern (23 bp):
TTTTTTTCATTTTTCATCATCAT
Found at i:51067877 original size:32 final size:29
Alignment explanation
Indices: 51067841--51067903 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 29
51067831 GGTTTTTGCC
*
51067841 TTGACCTCTCATTTTTCTTTTTTTTTCTTATT
1 TTGA-CTCTCATTTTT-TTTATTTTT-TTATT
* *
51067873 TTGACTTTGATTTTTTTTATTTTTTTATT
1 TTGACTCTCATTTTTTTTATTTTTTTATT
51067902 TT
1 TT
51067904 TTGATTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 7 0.25
30 8 0.29
31 9 0.32
32 4 0.14
ACGTcount: A:0.11, C:0.11, G:0.05, T:0.73
Consensus pattern (29 bp):
TTGACTCTCATTTTTTTTATTTTTTTATT
Found at i:51067896 original size:9 final size:9
Alignment explanation
Indices: 51067851--51067943 Score: 66
Period size: 9 Copynumber: 9.9 Consensus size: 9
51067841 TTGACCTCTC
51067851 ATTTTTCTTT
1 ATTTTT-TTT
51067861 -TTTTTTCTT
1 ATTTTTT-TT
*
51067870 ATTTTGACTTTG
1 ATTTT---TTTT
51067882 ATTTTTTTT
1 ATTTTTTTT
51067891 A-TTTTTTT
1 ATTTTTTTT
*
51067899 A-TTTTTTG
1 ATTTTTTTT
*
51067907 ATTTTTTTG
1 ATTTTTTTT
51067916 ATTTTTTTTT
1 A-TTTTTTTT
*
51067926 GATTTTTTTG
1 -ATTTTTTTT
51067936 ATTTTTTT
1 ATTTTTTT
51067944 GAGTCTGAAC
Statistics
Matches: 70, Mismatches: 5, Indels: 17
0.76 0.05 0.18
Matches are distributed among these distances:
8 16 0.23
9 27 0.39
10 18 0.26
11 1 0.01
12 6 0.09
13 2 0.03
ACGTcount: A:0.11, C:0.03, G:0.06, T:0.80
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:51067924 original size:29 final size:30
Alignment explanation
Indices: 51067888--51067945 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
51067878 TTTGATTTTT
*
51067888 TTTATTTTTTTA-TTTTTTGATTTTTTTGA
1 TTTATTTTTTGATTTTTTTGATTTTTTTGA
51067917 TTT-TTTTTTGATTTTTTTGATTTTTTTGA
1 TTTATTTTTTGATTTTTTTGATTTTTTTGA
51067946 GTCTGAACTC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 7 0.26
29 20 0.74
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.79
Consensus pattern (30 bp):
TTTATTTTTTGATTTTTTTGATTTTTTTGA
Found at i:51067944 original size:9 final size:9
Alignment explanation
Indices: 51067878--51067945 Score: 95
Period size: 9 Copynumber: 7.6 Consensus size: 9
51067868 TTATTTTGAC
51067878 TTTGATTTT
1 TTTGATTTT
*
51067887 TTTTATTTT
1 TTTGATTTT
51067896 TTT-A-TTT
1 TTTGATTTT
51067903 TTTGATTTT
1 TTTGATTTT
51067912 TTTGATTTTTT
1 TTTGA--TTTT
51067923 TTTGATTTT
1 TTTGATTTT
51067932 TTTGATTTT
1 TTTGATTTT
51067941 TTTGA
1 TTTGA
51067946 GTCTGAACTC
Statistics
Matches: 54, Mismatches: 1, Indels: 8
0.86 0.02 0.13
Matches are distributed among these distances:
7 6 0.11
8 2 0.04
9 37 0.69
11 9 0.17
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.79
Consensus pattern (9 bp):
TTTGATTTT
Found at i:51069204 original size:19 final size:19
Alignment explanation
Indices: 51069180--51069220 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
51069170 TGTGAAAATC
*
51069180 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATG-AATG
51069199 TAATGCAAATGCATGAATG
1 TAATGCAAATGCATGAATG
51069218 TAA
1 TAA
51069221 AAAGAGACGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (19 bp):
TAATGCAAATGCATGAATG
Found at i:51070515 original size:8 final size:8
Alignment explanation
Indices: 51070502--51070526 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
51070492 TAGTTGATTA
51070502 CTTAATGT
1 CTTAATGT
51070510 CTTAATGT
1 CTTAATGT
51070518 CTTAATGT
1 CTTAATGT
51070526 C
1 C
51070527 GAAAATTGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.48
Consensus pattern (8 bp):
CTTAATGT
Found at i:51071676 original size:3 final size:3
Alignment explanation
Indices: 51071668--51071722 Score: 65
Period size: 3 Copynumber: 18.0 Consensus size: 3
51071658 AAATAAAGCA
** * *
51071668 AAT AAT AATT AAT AAT GGT AGT AAT GAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
51071714 AAT AAT AAT
1 AAT AAT AAT
51071723 TAATTAAACA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
3 42 0.93
4 3 0.07
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:51073279 original size:100 final size:98
Alignment explanation
Indices: 51073117--51073395 Score: 315
Period size: 100 Copynumber: 2.8 Consensus size: 98
51073107 AAGTAAGATC
* * * *
51073117 CGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTTAGGGAAGTAAGATCCGCTGTTGTAGCTTC
1 CGCTGTTATAGCTTCAAT-TTTTTAATTGCAATGTTAGGGAAGTGAGATTCGCTATTGTAGCTTC
* * * * **
51073182 AATCTGTTCCGTTGCATCGCCAATGATGTGAGACT
65 AATCTGTTCCGCTACACCG-CAAGGAAATGAGACT
* * * * * * **
51073217 CGCTGTTCTAGCTTCAATTTATTTGACTGCAATGTTGGGGAAGCGAGATTCGCCATCATAGCTTC
1 CGCTGTTATAGCTTCAATTT-TTTAATTGCAATGTTAGGGAAGTGAGATTCGCTATTGTAGCTTC
* *
51073282 AATCTGTTCCACTACACCGCAAGGAAATGAGATT
65 AATCTGTTCCGCTACACCGCAAGGAAATGAGACT
* * * *
51073316 CGCCGTTATAGCTTCAATCTTTTAATTGCAATGTCAGGGAAGTGAGACTCGCTATTGTAGCTTCA
1 CGCTGTTATAGCTTCAATTTTTTAATTGCAATGTTAGGGAAGTGAGATTCGCTATTGTAGCTTCA
51073381 ATCTGTTCCGCTACA
66 ATCTGTTCCGCTACA
51073396 TTGCCTGAAA
Statistics
Matches: 146, Mismatches: 32, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
98 50 0.34
99 30 0.21
100 66 0.45
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (98 bp):
CGCTGTTATAGCTTCAATTTTTTAATTGCAATGTTAGGGAAGTGAGATTCGCTATTGTAGCTTCA
ATCTGTTCCGCTACACCGCAAGGAAATGAGACT
Found at i:51073362 original size:49 final size:50
Alignment explanation
Indices: 51073104--51073387 Score: 196
Period size: 50 Copynumber: 5.7 Consensus size: 50
51073094 TGTGTCGCCT
* * * *
51073104 GGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTTA
1 GGGAAGTGAGATTCGCTGTTGTAGCTTCAATCTGTTTAATTGCAATGTCA
* * *** *
51073154 GGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCGTTGC-ATCGCCA
1 GGGAAGTGAGATTCGCTGTTGTAGCTTCAATCTGTTTAATTGCAAT-GTCA
** * * * * * * * **
51073204 ATGATGTGAGACTCGCTGTTCTAGCTTCAATTTATTTGACTGCAATGTTG
1 GGGAAGTGAGATTCGCTGTTGTAGCTTCAATCTGTTTAATTGCAATGTCA
* ** ** ** * * **
51073254 GGGAAGCGAGATTCGCCATCATAGCTTCAATCTGTTCCACTACACCG-CA
1 GGGAAGTGAGATTCGCTGTTGTAGCTTCAATCTGTTTAATTGCAATGTCA
* * * *
51073303 AGGAAATGAGATTCGCCGTTATAGCTTCAATCT-TTTAATTGCAATGTCA
1 GGGAAGTGAGATTCGCTGTTGTAGCTTCAATCTGTTTAATTGCAATGTCA
* *
51073352 GGGAAGTGAGACTCGCTATTGTAGCTTCAATCTGTT
1 GGGAAGTGAGATTCGCTGTTGTAGCTTCAATCTGTT
51073388 CCGCTACATT
Statistics
Matches: 173, Mismatches: 57, Indels: 8
0.73 0.24 0.03
Matches are distributed among these distances:
48 7 0.04
49 59 0.34
50 105 0.61
51 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.33
Consensus pattern (50 bp):
GGGAAGTGAGATTCGCTGTTGTAGCTTCAATCTGTTTAATTGCAATGTCA
Found at i:51073377 original size:98 final size:98
Alignment explanation
Indices: 51073107--51073543 Score: 409
Period size: 96 Copynumber: 4.4 Consensus size: 98
51073097 GTCGCCTGGG
* * * * *
51073107 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTTAGGGAAGTAAGA-TCCGCT
1 AAGTAAGATTCGCCGTTATAGCTTCAATC-TTTTAATTGCAATGTTAGGGAAGTGAGACT-CGCC
* * *
51073171 GTTGTAGCTTCAATCTGTTCCGTTGCATCGCCAATG-
64 ATTGTAGCTTCAATCTGTTCCGCTACATCG-C-ATGA
* * * * * * * * * * *
51073207 ATGTGAGACTCGCTGTTCTAGCTTCAATTTATTTGACTGCAATGTTGGGGAAGCGAGATTCGCCA
1 AAGTAAGATTCGCCGTTATAGCTTCAATCT-TTTAATTGCAATGTTAGGGAAGTGAGACTCGCCA
** * * *
51073272 TCATAGCTTCAATCTGTTCCACTACACCGCAAGGA
65 TTGTAGCTTCAATCTGTTCCGCTACATCGC-ATGA
* * *
51073307 AA-TGAGATTCGCCGTTATAGCTTCAATCTTTTAATTGCAATGTCAGGGAAGTGAGACTCGCTAT
1 AAGTAAGATTCGCCGTTATAGCTTCAATCTTTTAATTGCAATGTTAGGGAAGTGAGACTCGCCAT
* *
51073371 TGTAGCTTCAATCTGTTCCGCTACATTGCCTGA
66 TGTAGCTTCAATCTGTTCCGCTACATCGCATGA
* * ** *
51073404 AAGTAAGATTTGCCGTTATGGCTTTGATCTTTTAAATTGCAATG---GGGAAGTGAGACTCGCCG
1 AAGTAAGATTCGCCGTTATAGCTTCAATCTTTT-AATTGCAATGTTAGGGAAGTGAGACTCGCCA
* * *
51073466 TTGTAGCTTCAATTTGTTCCGCTGCATCGCCTGA
65 TTGTAGCTTCAATCTGTTCCGCTACATCGCATGA
* *
51073500 AAGTAAGATTCGCCGTTGTAGCTTCGATCTTTTAAATTGCAATG
1 AAGTAAGATTCGCCGTTATAGCTTCAATCTTTT-AATTGCAATG
51073544 GGGAAGTAAG
Statistics
Matches: 279, Mismatches: 53, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
96 87 0.31
97 4 0.01
98 77 0.28
99 38 0.14
100 72 0.26
101 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (98 bp):
AAGTAAGATTCGCCGTTATAGCTTCAATCTTTTAATTGCAATGTTAGGGAAGTGAGACTCGCCAT
TGTAGCTTCAATCTGTTCCGCTACATCGCATGA
Found at i:51073832 original size:96 final size:96
Alignment explanation
Indices: 51073668--51073846 Score: 331
Period size: 96 Copynumber: 1.9 Consensus size: 96
51073658 NNNNTACATT
* *
51073668 GCCTGAAAGTAAGATTTGCCGTTATGGCTTTGATCTTTTAAATTGCAATGGGGAAGTGAGACTCG
1 GCCTGAAAGTAAGATTCGCCGTTATGGCTTCGATCTTTTAAATTGCAATGGGGAAGTGAGACTCG
51073733 CCGTTGTAGCTTCAATCTGTTCCGCTGCATC
66 CCGTTGTAGCTTCAATCTGTTCCGCTGCATC
*
51073764 GCCTGAAAGTAAGATTCGCCGTTGTGGCTTCGATCTTTTAAATTGCAATGGGGAAGTGAGACTCG
1 GCCTGAAAGTAAGATTCGCCGTTATGGCTTCGATCTTTTAAATTGCAATGGGGAAGTGAGACTCG
51073829 CCGTTGTAGCTTCAATCT
66 CCGTTGTAGCTTCAATCT
51073847 TTTTAATTGC
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
96 80 1.00
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (96 bp):
GCCTGAAAGTAAGATTCGCCGTTATGGCTTCGATCTTTTAAATTGCAATGGGGAAGTGAGACTCG
CCGTTGTAGCTTCAATCTGTTCCGCTGCATC
Found at i:51073841 original size:47 final size:47
Alignment explanation
Indices: 51073700--51073896 Score: 182
Period size: 47 Copynumber: 4.1 Consensus size: 47
51073690 TATGGCTTTG
51073700 ATCTTTTAAATTGCAATGGGGAAGTGAGACTCGCCGTTGTAGCTTCA
1 ATCTTTTAAATTGCAATGGGGAAGTGAGACTCGCCGTTGTAGCTTCA
* **** * * * * * *
51073747 ATCTGTTCCGCTGC-ATCGCCTGAAAGTAAGATTCGCCGTTGTGGCTTCG
1 ATCTTTTAAATTGCAAT-G--GGGAAGTGAGACTCGCCGTTGTAGCTTCA
51073796 ATCTTTTAAATTGCAATGGGGAAGTGAGACTCGCCGTTGTAGCTTCA
1 ATCTTTTAAATTGCAATGGGGAAGTGAGACTCGCCGTTGTAGCTTCA
* * **
51073843 ATCTTTTTAATTGCAATGTCAGGGAAGTAAGA-TCCGCTATTGTAGCTTCA
1 ATCTTTTAAATTGCAATG---GGGAAGTGAGACT-CGCCGTTGTAGCTTCA
51073893 ATCT
1 ATCT
51073897 GTTCCACTGT
Statistics
Matches: 116, Mismatches: 26, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
46 2 0.02
47 50 0.43
49 34 0.29
50 30 0.26
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (47 bp):
ATCTTTTAAATTGCAATGGGGAAGTGAGACTCGCCGTTGTAGCTTCA
Found at i:51073889 original size:50 final size:49
Alignment explanation
Indices: 51073770--51074158 Score: 370
Period size: 50 Copynumber: 7.9 Consensus size: 49
51073760 CATCGCCTGA
* * * * *
51073770 AAGTAAGATTCGCCGTTGTGGCTTCGATCTTTTAAATTGCAATG--GGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGCAGGG
* *
51073817 AAGTGAGA-CTCGCCGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGG
1 AAGTAAGATC-CGCTGTTGTAGCTTCAATCTTTTTAATTGCAATG-CAGGG
* * ** * * *
51073867 AAGTAAGATCCGCTATTGTAGCTTCAATCTGTTCCACTGTAATGCTAGGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGC-AGGG
* * * *
51073917 AAGTAAGATCCGCTGTTGTAGCTTCAGTCTTCTTATTTGCGATGTCAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATG-CAGGG
* * ** * * **
51073967 AAGTAAGATCTGCTGTTGTAGCTTCAATCTGTTCCACTGCAACGCTAGAA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGC-AGGG
** *
51074017 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTCGTAATTGCAATGTTAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATG-CAGGG
* * ** * *
51074067 AAGTAAGATCCACTGTTGTAGCTTCAATCTATTCCACTGCAATGCTAGGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGC-AGGG
*
51074117 AAGTAAGATCCGCTGTTGTAGCTTCAATCATTTTAATTGCAA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAA
51074159 ACTATGATTT
Statistics
Matches: 269, Mismatches: 63, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
47 38 0.14
49 2 0.01
50 227 0.84
51 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (49 bp):
AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGCAGGG
Found at i:51073970 original size:100 final size:100
Alignment explanation
Indices: 51073831--51074158 Score: 523
Period size: 100 Copynumber: 3.3 Consensus size: 100
51073821 GAGACTCGCC
* *
51073831 GTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCTATTGTAGCTTCAATC
1 GTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATC
*
51073896 TGTTCCACTGTAATGCTAGGAAAGTAAGATCCGCT
66 TGTTCCACTGCAATGCTAGGAAAGTAAGATCCGCT
* * * *
51073931 GTTGTAGCTTCAGTCTTCTTATTTGCGATGTCAGGGAAGTAAGATCTGCTGTTGTAGCTTCAATC
1 GTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATC
* *
51073996 TGTTCCACTGCAACGCTAGAAAAGTAAGATCCGCT
66 TGTTCCACTGCAATGCTAGGAAAGTAAGATCCGCT
* * *
51074031 GTTGTAGCTTCAATCTTCGTAATTGCAATGTTAGGGAAGTAAGATCCACTGTTGTAGCTTCAATC
1 GTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATC
*
51074096 TATTCCACTGCAATGCTAGGAAAGTAAGATCCGCT
66 TGTTCCACTGCAATGCTAGGAAAGTAAGATCCGCT
51074131 GTTGTAGCTTCAATCATT-TTAATTGCAA
1 GTTGTAGCTTCAATC-TTCTTAATTGCAA
51074159 ACTATGATTT
Statistics
Matches: 207, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
100 205 0.99
101 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.34
Consensus pattern (100 bp):
GTTGTAGCTTCAATCTTCTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATC
TGTTCCACTGCAATGCTAGGAAAGTAAGATCCGCT
Done.